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Kelp forest monitoring at Naval Base Ventura County, San Nicolas Island, California: Fall 2018 and Spring 2019, fifth annual report

Introduction Kelp forests and rocky reefs are among the most recognized marine ecosystems and provide the primary habitat for several species of fishes, invertebrates, and algal assemblages (Stephens and others, 2006). In addition, kelp forests have been shown to be important carbon dioxide sinks (Wilmers and others, 2012) and are an important source of nearshore marine primary production (Duggins and others, 1989). These highly dynamic ecosystems are extremely variable, and both top-down and bottom-up ecological controls drive this rich trophic environment. Giant kelp ( Macrocystis pyrifera ) forests and the species that inhabit these ecosystems are influenced by several environmental conditions, such as wave exposure, water temperature, water clarity, bottom depth and composition, species composition, and the density of kelp and other algal assemblages (Schiel and Foster, 2015). However, in addition to “normal” variability, kelp forests can undergo extreme regime shifts from kelp canopy forested areas to barrens characterized by high densities of urchins and encrusting coralline algae (Harrold and Reed, 1985). San Nicolas Island (SNI), outermost of the California Channel Islands, is home to a diverse group of terrestrial and marine organisms and includes kelp bed and rocky reef habitats ( fig. 1 ). The SNI kelp forests not only provide food and shelter for fishes and invertebrates within the habitat, but also they support higher trophic level consumers such as marine birds and several marine mammal species including the southern sea otter ( Enhydra lutris nereis) , a major predator on sea urchins and other marine invertebrates. Owing to concern about the vulnerability of the California population, the U.S. Fish and Wildlife Service (USFWS) translocated 140 southern sea otters from the central California coast to SNI between 1987 and 1990. Although only approximately 14 translocated otters are thought to have remained at SNI (U.S. Fish and Wildlife Service, 2012), their population at the island has increased and is currently greater than 120 individuals (Hatfield and others, 2019). Sea otters are a natural part of the kelp forest ecosystem, but their presence has implications for community dynamics as they repopulate a region from which they were extirpated in the 19th century. At SNI, sea otters have been concentrated mostly around the west end of the island, with some use of the south side and very little, but expanding, use of the northeast side. An ecosystem shift from urchin dominated to kelp dominated, that occurred at a site at the west end of the island in the early 2000s, though initiated by sea urchin disease, was likely facilitated to some degree by sea otter foraging (Kenner and Tinker, 2018). These ecosystems also are the target of many fisheries, including urchin and lobster. Urchin fisheries, which target the larger red sea urchin, may release the smaller but more mobile purple sea urchin from competitive control (Dayton and others, 1998). Lobster fisheries may release purple sea urchins from predatory control (Lafferty, 2004). Owing to the distance from the mainland, however, SNI kelp forests and reefs have been somewhat protected from the degree of harvest and other anthropogenic impacts experienced by the southern California mainland. Invasive species are another issue, and there are a few invasive subtidal macroalgae of concern in southern California waters. Although the brown alga Sargassum muticum has been established at the island for decades, S. horneri has only recently been seen at SNI and, so far, the invasive kelp Undaria pinnatifida and the green alga Caulerpa taxifolia have not been observed there. Sargassum horneri , in particular, has demonstrated a capability to outcompete native kelps at some of the other Channel Islands but it is unclear what indirect effects it may have on community structure (Marks and others, 2015). Because the surrounding kelp forests fall within the management boundary of the SNI Integrated Natural Resources Management Plan (INRMP; U.S. Navy, 2015), USGS works with the Navy to provide surveys of this ecologically important ecosystem that inform natural resource managers of trends in the population abundance of particular species. In addition, long-term surveys allow for an understanding of potential changes in species diversity and community composition as a result of trophic or other interactions. The U.S. Geological Survey (USGS) implemented a kelp forest monitoring program for the U.S. Navy at San Nicolas Island in 2014, building on sites and methods established by USFWS scientists in 1980 ( appendix 1 ). This report focuses on data collected during sampling expeditions to these sites in fall 2018 (October 2–5) and spring 2019 (April 3–6). Together they will be herein referred to as year 5 because, although the trips were made in different calendar years, they were approximately 6 months apart and were conducted under the fifth year of this contract. The previous sampling year (fall 2017 and spring 2018) is referred to as year 4. The year 5 data are compared with data collected during eight trips from fall 2014 through spring 2018. Differences in counts between these expeditions can result from seasonal factors, stochastic variation, or sampling error, but temporal comparison can reveal population trends. Where appropriate, long-term data collected during the 33 years prior to the implementation of these slightly revised protocols will be presented in order to lend some context to the observations reported here. Genus and species names used in this report are those currently recognized as valid in the Integrated Taxonomic Information System (ITIS.gov). Upon first use, the name recognized as valid by the World Register of Marine Species (WoRMS; marinespecies.org) is shown in brackets if different. The exception is Sargassum horneri which does not show up in any discernable form in ITIS.gov.

California↗

Mass mortality in freshwater mussels (Actinonaias pectorosa) in the Clinch River, USA, linked to a novel densovirus

Freshwater mussels (order Unionida) are among the world’s most biodiverse but imperiled taxa. Recent unionid mass mortality events around the world threaten ecosystem services such as water filtration, nutrient cycling, habitat stabilization, and food web enhancement, but causes have remained elusive. To examine potential infectious causes of these declines, we studied mussels in Clinch River, Virginia and Tennessee, USA, where the endemic and once-predominant pheasantshell ( Actinonaias pectorosa ) has suffered precipitous declines since approximately 2016. Using metagenomics, we identified 17 novel viruses in Clinch River pheasantshells. However, only one virus, a novel densovirus ( Parvoviridae ; Densovirinae ), was epidemiologically linked to morbidity. Clinch densovirus 1 was 11.2 times more likely to be found in cases (moribund mussels) than controls (apparently healthy mussels from the same or matched sites), and cases had 2.7 (log 10 ) times higher viral loads than controls. Densoviruses cause lethal epidemic disease in invertebrates, including shrimp, cockroaches, crickets, moths, crayfish, and sea stars. Viral infection warrants consideration as a factor in unionid mass mortality events either as a direct cause, an indirect consequence of physiological compromise, or a factor interacting with other biological and ecological stressors to precipitate mortality.

Virginia, Tennessee↗

Bisphenol A is released from used polycarbonate animal cages into water at room temperature

Bisphenol A (BPA) is a monomer with estrogenic activity that is used in the production of food packaging, dental sealants, polycarbonate plastic, and many other products. The monomer has previously been reported to hydrolyze and leach from these products under high heat and alkaline conditions, and the amount of leaching increases as a function of use. We examined whether new and used polycarbonate animal cages passively release bioactive levels of BPA into water at room temperature and neutral pH. Purified water was incubated at room temperature in new polycarbonate and polysulfone cages and used (discolored) polycarbonate cages, as well as control (glass and used polypropylene) containers. The resulting water samples were characterized with gas chromatography/mass spectrometry (GC/MS) and tested for estrogenic activity using an MCF-7 human breast cancer cell proliferation assay. Significant estrogenic activity, identifiable as BPA by GC/MS (up to 310 micro g/L), was released from used polycarbonate animal cages. Detectable levels of BPA were released from new polycarbonate cages (up to 0.3 micro g/L) as well as new polysulfone cages (1.5 micro g/L), whereas no BPA was detected in water incubated in glass and used polypropylene cages. Finally, BPA exposure as a result of being housed in used polycarbonate cages produced a 16% increase in uterine weight in prepubertal female mice relative to females housed in used polypropylene cages, although the difference was not statistically significant. Our findings suggest that laboratory animals maintained in polycarbonate and polysulfone cages are exposed to BPA via leaching, with exposure reaching the highest levels in old cages.

Environmental Health Perspectives↗

Experimental evidence for evolved tolerance to avian malaria in a wild population of low elevation Hawai`i `Amakihi ( Hemignathus virens )

Introduced vector-borne diseases, particularly avian malaria ( Plasmodium relictum ) and avian pox virus ( Avipoxvirus spp.), continue to play significant roles in the decline and extinction of native forest birds in the Hawaiian Islands. Hawaiian honeycreepers are particularly susceptible to avian malaria and have survived into this century largely because of persistence of high elevation refugia on Kaua‘i, Maui, and Hawai‘i Islands, where transmission is limited by cool temperatures. The long term stability of these refugia is increasingly threatened by warming trends associated with global climate change. Since cost effective and practical methods of vector control in many of these remote, rugged areas are lacking, adaptation through processes of natural selection may be the best long-term hope for recovery of many of these species. We document emergence of tolerance rather than resistance to avian malaria in a recent, rapidly expanding low elevation population of Hawai‘i ‘Amakihi ( Hemignathus virens ) on the island of Hawai‘i. Experimentally infected low elevation birds had lower mortality, lower reticulocyte counts during recovery from acute infection, lower weight loss, and no declines in food consumption relative to experimentally infected high elevation Hawai‘i ‘Amakihi in spite of similar intensities of infection. Emergence of this population provides an exceptional opportunity for determining physiological mechanisms and genetic markers associated with malaria tolerance that can be used to evaluate whether other, more threatened species have the capacity to adapt to this disease.

Hawai'i↗

Experimental evidence for recovery of mercury-contaminated fish populations

Anthropogenic releases of mercury (Hg) 1,2,3 are a human health issue 4 because the potent toxicant methylmercury (MeHg), formed primarily by microbial methylation of inorganic Hg in aquatic ecosystems, bioaccumulates to high concentrations in fish consumed by humans 5,6 . Predicting the efficacy of Hg pollution controls on fish MeHg concentrations is complex because many factors influence the production and bioaccumulation of MeHg 7,8,9 . Here we conducted a 15-year whole-ecosystem, single-factor experiment to determine the magnitude and timing of reductions in fish MeHg concentrations following reductions in Hg additions to a boreal lake and its watershed. During the seven-year addition phase, we applied enriched Hg isotopes to increase local Hg wet deposition rates fivefold. The Hg isotopes became increasingly incorporated into the food web as MeHg, predominantly from additions to the lake because most of those in the watershed remained there. Thereafter, isotopic additions were stopped, resulting in an approximately 100% reduction in Hg loading to the lake. The concentration of labelled MeHg quickly decreased by up to 91% in lower trophic level organisms, initiating rapid decreases of 38–76% of MeHg concentration in large-bodied fish populations in eight years. Although Hg loading from watersheds may not decline in step with lowering deposition rates, this experiment clearly demonstrates that any reduction in Hg loadings to lakes, whether from direct deposition or runoff, will have immediate benefits to fish consumers.

Experimental Lakes Area↗

Capsaicin-treated bait is ineffective in deterring non-target mammals from trap disturbance during invasive lizard control

Excluding non-target species from invasive species control efforts can be challenging due to non-target attraction to trap structure, baits, and lures. Various methods have been used to deter non-target species from entering or disturbing traps including altered features (e.g., mesh size, trip mechanism, or entrances), staking traps, and chemical deterrents. Invasive populations of Argentine Black and White Tegu lizards ( Salvator merianae ) occur in several locations across Florida and Georgia, and there are ongoing trapping efforts to control them. At sites in Georgia, non-target mammals disturb most of the lizard traps (>80%), consume egg bait/lures, and thus reduce trap efficacy. In contrast, our Florida site has fewer problems with non-target mammals. Our goal was to quantify the efficacy of capsaicin-coated eggs, a known distasteful irritant to mammals, as a non-target bait deterrent in live traps set for tegus in both Georgia and Florida. We conducted feeding assays on three tegus and found that individuals readily consumed food coated in capsaicin. We then conducted a three-part, live trapping experiment to test 1) if trap disturbance by mammals habituated to eggs without capsaicin decreased when capsaicin-coated eggs were deployed in Georgia, 2) if mammals not habituated to eggs as bait (treated or untreated) disturbed live traps at the same rate as those habituated to eggs in Georgia, and 3) if tegu capture rates were different when capsaicin treated eggs were deployed in Florida. In Georgia, we found that trap disturbance by non-target mammals did not decrease when capsaicin was applied to eggs in an area previously habituated to trapping with this bait nor when applied in a novel area. In Florida, we found no significant difference in tegu captures using capsaicin-treated vs. untreated bait. Tegus were tolerant of capsaicin, but capsaicin treated eggs did not reduce non-target mammal disturbance to traps. Therefore, removal of invasive populations could be problematic if methods to reduce trap disturbance by non-targets are not identified and deployed.

NeoBiota↗

Quagga and zebra mussels: biology, impacts, and control

Quagga and Zebra Mussels: Biology, Impacts, and Control , Second Edition provides a broad view of the zebra/quagga mussel issue, offering a historic perspective and up-to-date information on mussel research. Comprising 48 chapters, this second edition includes reviews of mussel morphology, physiology, and behavior. It details mussel distribution and spread in Europe and across North America, and examines policy and regulatory responses, management strategies, and mitigation efforts. In addition, this book provides extensive coverage of the impact of invasive mussel species on freshwater ecosystems, including effects on water clarity, phytoplankton, water quality, food web changes, and consequences to other aquatic fauna. It also reviews and offers new insights on how zebra and quagga mussels respond and adapt to varying environmental conditions. This new edition includes seven video clips that complement chapter text and, through visual documentation, provide a greater understanding of mussel behavior and distribution.

Book↗

Laboratory studies of potential competition for food and substrate among early juvenile Missouri River sturgeon and sympatric chub species

Juvenile Pallid Sturgeon Scaphirhynchus albus predominantly consume midges (family Chironomidae) and other macroinvertebrates, while Shovelnose Sturgeon S. platorynchus , Sicklefin Chub Macrhybopsis meeki , and Shoal Chub M. hyostoma feed on those same macroinvertebrates throughout life. The primary objective of this study was to assess the substrate component of habitat selection, specifically selection between sand and mud substrates, as it relates to food availability and quantity relative to presence or absence of a photoperiod (i.e., lack of light). The study was designed to assess the strength of the innate linkage of substrate and availability of food in foraging by early juvenile Pallid Sturgeon, early juvenile Shovelnose Sturgeon, their juvenile hybrids, and adult Sicklefin Chub and Shoal Chub. The ultimate goal of the study was to develop a better understanding of potential competition for resources among these five fish groups. Twenty-four individually isolated aquaria were used to test behavior during a 12 h light : 12 h dark cycle versus continuous darkness. Presence or absence of a photoperiod was combined with feeding levels of maximum ration ( C max ) versus half C max ration and the substrate to which food was delivered. Four-way ANOVA among all five groups and separate ANOVAs for sturgeon and chub groups that included fish group as a factor indicated a selection (i.e., proportion of time over substrate >0.5 given only two substrates equally available) for the substrate to which food was delivered, as expected. However, selection of mud was significantly greater for early juvenile Pallid Sturgeon compared with other fish groups except early juvenile Shovelnose Sturgeon. Neither feeding level nor presence or absence of a photoperiod significantly affected substrate selection. In individual fish group three-way ANOVAs, Sicklefin Chub did not select a substrate significantly more when food was delivered to the substrate. Shoal Chub selected mud more frequently under continuous darkness. All three sturgeon groups showed a significant increase in weight over time. Only Shovelnose Sturgeon and Sicklefin Chub final weight were significantly greater under C max compared to half C max . Additionally, early juvenile Pallid Sturgeon, early juvenile Shovelnose Sturgeon, and hybrid sturgeon groups had a greater increase in weight over the study under C max than half C max . While caution should always be used when extrapolating results from fine-scaled, controlled laboratory studies to large, complex river systems, the results from this study support the hypothesis of the potential for competition in the lower Missouri River among the studied fish groups.

North American Journal of Fisheries Management↗

Effects of methylmercury exposure on glutathione metabolism, oxidative stress, and chromosomal damage in captive-reared common loon (Gavia immer) chicks

We quantified the level of dietary mercury (Hg), delivered as methylmercury chloride (CH3HgCl), associated with negative effects on organ and plasma biochemistries related to glutathione (GSH) metabolism and oxidative stress, and chromosomal damage in captive-reared common loon (Gavia immer) chicks reared from hatch to 105 days. Mercury-associated effects related to oxidative stress and altered glutathione metabolism occurred at 1.2 :g Hg/g and 0.4 :g Hg/g, an ecologically relevant dietary mercury level, but not at 0.08 :g Hg/g. Among the variables that contributed most to dissimilarities in tissue chemistries between control and treatment groups were increased levels of oxidized glutathione (GSSG), GSH peroxidase, and the ratio of GSSG to GSH in brain tissue; increased levels of hepatic GSH; and decreased levels of hepatic glucose-6-phosphate dehydrogenase (G-6-PDH). Our results also suggest that chronic exposure to environmentally relevant dietary Hg levels did not result in statistically significant somatic chromosomal damage in common loon chicks. Oxidative stress and altered glutathione metabolism were evident in common loon chicks exposed to >0.4 :g Hg as CH3HgCl per gram wet food intake.

Environmental Pollution↗

Survival and growth of newly transformed Lampsilis cardium and Lampsilis siliquoidea in a flow-through, continuous feeding test system

A test system was evaluated for assessing chronic toxicity of waterborne chemicals with early life stage mussels. To determine if the test system could result in ≥80% survival in a control (unexposed) group, fat mucket mussels ( Lampsilis siliquoidea Barnes, 1823) and plain pocketbook mussels ( L. cardium Rafinesque, 1820) 1 day post transformation were stocked into test chambers (250 mL beakers, water volume, 200 mL, 21 °C, 40 mussels of 1 species per chamber) within a test system constructed for conducting chronic, continuous exposure, flow-through toxicity tests. The test system contained 60 chambers containing silica sand, 30 chambers with L. siliquoidea , and 30 with L. cardium . Each chamber in the continuous feeding system received 1 of 6 food types prepared with concentrated algal products. After 28 days, mussels were harvested from chambers to assess survival and growth. For L. siliquoidea , mean survival ranged from 34 to 80% and mean shell length ranged from 464 to 643 µm. For L. cardium , mean survival ranged from 12 to 66% and mean shell length ranged from 437 to 612 µm. The maximum mean growth rate for L. siliquoidea was 12.7 µm/d and for L. cardium was 11.8 µm/d. When offered a continuous diet of Nannochloropsis, Tetraselmis , and Chlorella for 28 days in the test system, the survival of 1 day post transformation L. siliquoidea was 80%. The test system can be easily enhanced with a pumping system continuously delivering test chemical to the test system's flow stream allowing for chronic toxicity tests with 1 day post transformation mussels.

American Malacological Bulletin↗

Productivity and linkages of the food web of the southern region of the western Antarctic Peninsula continental shelf

The productivity and linkages in the food web of the southern region of the west Antarctic Peninsula continental shelf were investigated using a multi-trophic level mass balance model. Data collected during the Southern Ocean Global Ocean Ecosystem Dynamics field program were combined with data from the literature on the abundance and diet composition of zooplankton, fish, seabirds and marine mammals to calculate energy flows in the food web and to infer the overall food web structure at the annual level. Sensitivity analyses investigated the effects of variability in growth and biomass of Antarctic krill ( Euphausia superba ) and in the biomass of Antarctic krill predators on the structure and energy fluxes in the food web. Scenario simulations provided insights into the potential responses of the food web to a reduced contribution of large phytoplankton (diatom) production to total primary production, and to reduced consumption of primary production by Antarctic krill and mesozooplankton coincident with increased consumption by microzooplankton and salps. Model-derived estimates of primary production were 187–207 g C m −2 y −1 , which are consistent with observed values (47–351 g C m −2 y −1 ). Simulations showed that Antarctic krill provide the majority of energy needed to sustain seabird and marine mammal production, thereby exerting a bottom-up control on higher trophic level predators. Energy transfer to top predators via mesozooplanton was a less efficient pathway, and salps were a production loss pathway because little of the primary production they consumed was passed to higher trophic levels. Increased predominance of small phytoplankton (nanoflagellates and cryptophytes) reduced the production of Antarctic krill and of its predators, including seabirds and seals.

Progress in Oceanography↗

Abnormalities in larvae from the once-largest Pacific herring population in Washington State result primarily from factors independent of spawning location

Among larvae from populations of Pacific herring Clupea pallasii in Washington State those from Cherry Point have consistently demonstrated abnormalities indicative of distress, including low weights and lengths at hatch, increased prevalences of skeletal abnormalities, and shorter survival times in food deprivation studies. The biomass of adult, prespawn Pacific herring at Cherry Point declined from 13,606 metric tons in 1973 to a record low 733 metric tons in 2000. However, correlation of larval abnormalities with adult recruitment was weak, indicating that the larval abnormalities did not directly cause the decline. Larval abnormalities originated primarily from factors independent of conditions at the spawning location because they were not reproduced by incubation of foreign zygotes along the Cherry Point shoreline but were reproduced after the development of indigenous zygotes in controlled laboratory conditions. Although the precise cause of the abnormalities was not determined, recent zoographic trends in elevated natural mortality among adult Pacific herring and resulting reduced age structures may be involved. ?? Copyright by the American Fisheries Society 2005.

Transactions of the American Fisheries Society↗

Visual cues for woodpeckers: light reflectance of decayed wood varies by decay fungus

The appearance of wood substrates is likely relevant to bird species with life histories that require regular interactions with wood for food and shelter. Woodpeckers detect decayed wood for cavity placement or foraging, and some species may be capable of detecting trees decayed by specific fungi; however, a mechanism allowing for such specificity remains unidentified. We hypothesized that decay fungi associated with woodpecker cavity sites alter the substrate reflectance in a species-specific manner that is visually discriminable by woodpeckers. We grew 10 species of wood decay fungi from pure cultures on sterile wood substrates of 3 tree species. We then measured the relative reflectance spectra of decayed and control wood wafers and compared them using the receptor noise-limited (RNL) color discrimination model. The RNL model has been used in studies of feather coloration, egg shells, flowers, and fruit to model how the colors of objects appear to birds. Our analyses indicated 6 of 10 decayed substrate/control comparisons were above the threshold of discrimination (i.e., indicating differences discriminable by avian viewers), and 12 of 13 decayed substrate comparisons were also above threshold for a hypothetical woodpecker. We conclude that woodpeckers should be capable of visually detecting decayed wood on trees where bark is absent, and they should also be able to detect visually species-specific differences in wood substrates decayed by fungi used in this study. Our results provide evidence for a visual mechanism by which woodpeckers could identify and select substrates decayed by specific fungi, which has implications for understanding ecologically important woodpecker–fungus interactions.

Wilson Journal of Ornithology↗

Global tropical reef fish richness could decline by around half if corals are lost

Reef fishes are a treasured part of marine biodiversity, and also provide needed protein for many millions of people. Although most reef fishes might survive projected increases in ocean temperatures, corals are less tolerant. A few fish species strictly depend on corals for food and shelter, suggesting that coral extinctions could lead to some secondary fish extinctions. However, secondary extinctions could extend far beyond those few coral-dependent species. Furthermore, it is yet unknown how such fish declines might vary around the world. Current coral mass mortalities led us to ask how fish communities would respond to coral loss within and across oceans. We mapped 6964 coral-reef-fish species and 119 coral genera, and then regressed reef-fish species richness against coral generic richness at the 1° scale (after controlling for biogeographic factors that drive species diversification). Consistent with small-scale studies, statistical extrapolations suggested that local fish richness across the globe would be around half its current value in a hypothetical world without coral, leading to more areas with low or intermediate fish species richness and fewer fish diversity hotspots.

Proceedings of the Royal Society B↗

Understanding mast seeding for conservation and land management

Masting, the intermittent and synchronous production of large seed crops, can have profound consequences for plant populations and the food webs that are built on their seeds. For centuries, people have recorded mast crops because of their importance in managing wildlife populations. In the past 30 years, we have begun to recognize the importance of masting in conserving and managing many other aspects of the environment: promoting the regeneration of forests following fire or other disturbance, conserving rare plants, conscientiously developing the use of edible seeds as non-timber forest products, coping with the consequences of extinctions on seed dispersal, reducing the impacts of plant invasions with biological control, suppressing zoonotic diseases and preventing depredation of endemic fauna. We summarize current instances and future possibilities of a broad set of applications of masting. By exploring in detail several case studies, we develop new perspectives on how solutions to pressing conservation and land management problems may benefit by better understanding the dynamics of seed production. A lesson common to these examples is that masting can be used to time management, and often, to do this effectively, we need models that explicitly forecast masting and the dynamics of seed-eating animals into the near-term future.

Philosophical Transactions of the Royal Society B:↗

Protecting Black-Footed Ferrets and Prairie Dogs against sylvatic plague

Scientists at the USGS National Wildlife Health Center (NWHC), in collaboration with colleagues at other federal agencies and the University of Wisconsin, are developing and testing vaccines that can be used to protect black-footed ferrets and prairie dogs against plague. The black-footed ferret is commonly regarded as the most endangered mammal in North America, and sylvatic plague is a major impediment to its recovery. The three prairie dog species (Gunnison's, black-tailed, and white-tailed prairie dogs), upon which the ferret depends for food and whose burrows they use for shelter, have been drastically reduced from historical levels, resulting in the near extinction of the ferret. All three species are considered 'at risk' and have been petitioned for listing as 'threatened' or 'endangered' by the U.S. Fish and Wildlife Service (FWS). Additionally, the Utah prairie dog is listed as threatened and the Mexican prairie dog is considered endangered in Mexico. Like the black-footed ferret, all five prairie dog species are highly susceptible to plague and regularly experience outbreaks with devastating losses. Controlling plague outbreaks in prairie dogs and ferrets is a vital concern for ongoing recovery programs and conservation efforts for both species.

Fact Sheet↗

Riparian ecosystem creation and restoration: a literature summary

Riparian ecosystems generally compose a minor proportion of surrounding areas, but typically are more structurally diverse and more productive in plant and animal biomass than adjacent upland areas. Riparian areas supply food, cover, and water (especially important in the arid West) for a large diversity of animals, and serve as migration routes and forest connectors between habitats for a variety of wildlife, particularly ungulates and birds. Because riparian ecosystems often are relatively small areas and occur in conjunction with waterways, they are vulnerable to severe alteration. Riparian ecosystems throughout the U.S. have been heavily impacted by man's activities. Riparian ecosystem creation and restoration have been used as mitigation for project impacts from highway, bridge, and pipeline construction; water development; flood control channel modifications; industrial and residential development; agriculture; irrigation; livestock grazing; mining; and accidental habitat loss. Creation of a riparian ecosystem in| a more mesic upland area (e.g., ‘grassland or cropland) adjacent to a river requires appropriate water supply and grading the topography to suitable elevations to support plantings of riparian vegetation. Restoration involves returning the ecosystem to pre disturbance conditions and typically implies revegetation. Removing exotic vegetation or restoring water supplies to pre disturbance level also may be involved. Enhancement of riparian ecosystems commonly refers to improving existing conditions to increase habitat value, usually by increasing plant or community diversity to increase value for wildlife. Managing a riparian ecosystem typically involves enhancement techniques. However, creation and restoration projects often involve use of techniques considered more management-oriented (e.g., fencing to prevent cattle grazing until planted vegetation of a created or restored wetland is established). Protection of an existing riparian ecosystem from impact should be of utmost importance during planning and construction phases of development projects. If loss or damage is unavoidable, wetland creation or restoration can be used as mitigation. Compared to other wetland types (e.g., coastal wetlands), projects and techniques involving creation or restoration of riparian ecosystems are not well documented. For example, only 8% of the records in the WCR Data Base contained information on riparian ecosystems, whereas 31% of the records contained information on coastal emergent or forested ecosystems. To provide a source of currently available literature, riparian information from 92 records (primarily published papers or reports) in the U.S. Fish and Wildlife Service's (FWS) Wetland Creation-Restoration (WCR) Data Base (Schneller-McDonald et al. 1988) was used to develop a literature summary of creation and restoration of riparian ecosystems. The summary provides an overview of the status of riparian ecosystems in the U.S., a discussion of several riparian functions, and a review of some techniques used for planning, implementing, monitoring, and measuring project success of creation-restoration efforts. Case studies of various creation or restoration projects are used to demonstrate these techniques and to report some results of their use. Several well-documented case studies are discussed in detail to illustrate more extensive efforts to plan, implement, or monitor riparian ecosystem creation-restoration projects. For the purpose of this report, riparian ecosystems are defined as landscapes adjacent to drainageways of floodplains that exhibit vegetation, soil, and hydrologic mosaics along topographic and moisture gradients that are distinct from the predominant landscape surface types. Major plant communities are described under palustrine system in Cowardin et al. (1979). Literature from the WCR Data Base was used to provide a summary of riparian ecosystem creation-restoration literature. Thus, information concerning natural systems is not included unless discussed in these articles. This focus allows the reader to compare relative information available on riparian ecosystem creation-restoration efforts. However, this focus also results in limited information in some sections of the report (e.g., Status of Riparian Ecosystems in the U.S.). Individuals involved in riparian ecosystem creation-restoration efforts are encouraged to thoroughly examine available literature on natural and altered systems. Brinson et al. (1981) provide a comprehensive review and synthesis of the ecology and status of riparian ecosystems. Over 500 articles are cited in their 124-page report. Chapters include the following topics: status of riparian ecosystems in the U.S., ecological functions and properties of riparian ecosystems (e.g., geomorphology, primary productivity, nutrient cycling, hydrology), importance of riparian ecosystems to fish and wildlife, and considerations in valuation (ecologic and economic) of riparian ecosystems. Brinson et al. (1981) also discuss management of riparian ecosystems. Riparian ecosystem management literature was not included in the WCR Data Base, unless the article also discussed creation or restoration.

Report↗

Molecular and isotopic tracers used to examine sources of organic matter and its incorporation into the food webs of San Francisco Bay

Multiple indicators (Chl a , C : N ratios, [ δ 13 C]POC, and two classes of lipid biomarker compounds- sterols and phospholipid ester-linked fatty acids) were used to evaluate spatial and temporal variations in the origin of particulate organic matter (POM) in the San Francisco Bay (SFB) estuary. Comparisons were made between the northern and southern subestuaries of SFB, as well as along the salinity gradient of northern SFB. Two sample types were collected-seston, which was used to characterize the bulk POM, and tissues of the suspension-feeding bivalve Potamocorbula amurensis -in order to evaluate the assimilable portion of the POM. Samples were collected around biological and physical events (phytoplankton blooms and freshwater inflow) thought to be the primary mechanisms controlling temporal variability in organic matter sources. Seston samples indicate that phytoplankton sources of POM are important throughout the entire SFB system, with additional inputs of organic matter from bacterial and terrestrial vascular plant sources delivered to the northern region. Analysis of biomarker compounds in P. amurensis tissues indicates that phytoplankton supply a large fraction of the assimilable carbon to clams throughout SFB, although isotopic analysis of clam tissues suggests that the origin of this reactive carbon varies spatially and that freshwater algae are an important source of reactive organic matter to clams living in northern SFB.

California↗