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At least 451 records · Page 25Linked to original sources
USGS2000

Benthic foraminifera and environmental changes in Long Island Sound

Benthic foraminiferal faunas in Long Island Sound (LIS) in the 1940s and 1960s were of low diversity, and dominated by species of the genus Elphidium , mainly Elphidium excavatum clavatum , with common Buccella frigida and Eggerella advena . The distribution of these species was dominantly correlated with depth, but it was not clear which depth-related environmental variable was most important. Differences between faunas collected in 1996 and 1997, and in the 1940s and 1960s include a strong decrease in relative abundance of Eggerella advena over all LIS, an increase in relative abundance of Ammonia beccarii in western LIS, and a decrease in species diversity. The decreased diversity suggests that environmental stress caused the faunal changes. Oxygen isotope data for E. excavatum clavatum indicate that a change in salinity is not a probable cause. Carbon isotope data suggest that the supply of organic matter to the benthos increased since the early 1960s, with a stronger increase in western LIS where algal blooms have occurred since the early 1970s, possibly as a result of nutrient input by waste water treatment plants. These blooms or the resulting episodes of anoxia/hypoxia may have played a role in the increased relative abundance of A. beccarii . There is no clear explanation for the decreased abundance of E. advena , but changes in the phytoplankton composition (thus food supply) are a possible cause. Benthic foraminiferal faunal and stable isotope data have excellent potential as indicators of physicochemical environmental changes and their effects on the biota in LIS.

Connecticut, New York↗
USGS2026

Predicting reach-scale macroinvertebrate community changes due to declining flows in an aridland river

Understanding the connection between streamflow and macroinvertebrate community structure is critical for managing river ecosystems under scenarios of change caused by human activities and drought. Streamflow influences physical habitat characteristics, including depth, water velocity, and substrate composition, which structure macroinvertebrate communities. Although strong empirical evidence has linked macroinvertebrates to these variables, most studies are correlative, and predictive approaches that link altered streamflow to changes in habitat availability and community structure remain limited. To address this gap, we coupled benthic macroinvertebrate surveys with reach-scale, 2-dimensional hydraulic models to quantify changes in community structure in response to altered streamflows. We characterized macroinvertebrate communities and physical habitat conditions in riffle, run, and pool mesohabitats across 3 reaches of a free-flowing section of the Verde River (Arizona, USA) over 3 y and developed hydraulic models using overflight data, ground surveys, and streamflow monitoring. Macroinvertebrate communities differed among mesohabitats, with riffles supporting higher macroinvertebrate densities and pools exhibiting higher taxonomic richness. The 2-dimensional hydraulic models indicated that declining streamflows could reduce the area of suitable habitat in riffles and runs relative to pools, potentially shifting the distribution of mesohabitats and altering community composition. These changes may lead to declines in overall macroinvertebrate diversity and abundance under reduced flow conditions. By explicitly linking streamflow to habitat availability and community structure, this study demonstrates how integrating hydraulic modeling with biological surveys can improve predictions of ecological response to flow alteration. This framework provides a basis for flow management strategies aimed at maintaining habitat heterogeneity and supporting biodiversity in river networks.

Arizona↗
USGS2018

Trout in hot water: A call for global action

Trout are one of the most culturally, economically, and ecologically important taxonomic groups of freshwater fishes worldwide (1). Native to all continents in the Northern Hemisphere, trout are a taxonomically diverse group of fishes belonging to 7 genera (Oncorhynchus, Salvelinus, Salmo, Hucho, Parahucho, Brachymystax, and Salvethymus) distributed across 52 countries. These coldwater specialists provide recreation and food to millions of people, and play important roles in ecosystem functioning and health (2). They are also extremely sensitive to human disturbances because they require cold, clean, complex, and connected habitats for survival and persistence (3) – all attributes that humans have substantially altered and degraded (4, 5). Despite their broad importance as societal icons and as indicators of biodiversity, many of the world’s trout species and lineages are endangered and some require immediate conservation efforts to reverse their precarious decline.

Science↗
USGS2015

Exploration of the canyon-incised continental margin of the northeastern United States reveals dynamic habitats and diverse communities

The continental margin off the northeastern United States (NEUS) contains numerous, topographically complex features that increase habitat heterogeneity across the region. However, the majority of these rugged features have never been surveyed, particularly using direct observations. During summer 2013, 31 Remotely-Operated Vehicle (ROV) dives were conducted from 494 to 3271 m depth across a variety of seafloor features to document communities and to infer geological processes that produced such features. The ROV surveyed six broad-scale habitat features, consisting of shelf-breaching canyons, slope-sourced canyons, inter-canyon areas, open-slope/landslide-scar areas, hydrocarbon seeps, and Mytilus Seamount. Four previously unknown chemosynthetic communities dominated by Bathymodiolus mussels were documented. Seafloor methane hydrate was observed at two seep sites. Multivariate analyses indicated that depth and broad-scale habitat significantly influenced megafaunal coral (58 taxa), demersal fish (69 taxa), and decapod crustacean (34 taxa) assemblages. Species richness of fishes and crustaceans significantly declined with depth, while there was no relationship between coral richness and depth. Turnover in assemblage structure occurred on the middle to lower slope at the approximate boundaries of water masses found previously in the region. Coral species richness was also an important variable explaining variation in fish and crustacean assemblages. Coral diversity may serve as an indicator of habitat suitability and variation in available niche diversity for these taxonomic groups. Our surveys added 24 putative coral species and three fishes to the known regional fauna, including the black coral Telopathes magna , the octocoral Metallogorgia melanotrichos and the fishes Gaidropsarus argentatus , Guttigadus latifrons , and Lepidion guentheri . Marine litter was observed on 81% of the dives, with at least 12 coral colonies entangled in debris. While initial exploration revealed the NEUS region to be both geologically dynamic and biologically diverse, further research into the abiotic conditions and the biotic interactions that influence species abundance and distribution is needed.

Northeastern United States, Gulf of Maine, Georges↗
USGS2012

Emerging prion disease drives host selection in a wildlife population

Infectious diseases are increasingly recognized as an important force driving population dynamics, conservation biology, and natural selection in wildlife populations. Infectious agents have been implicated in the decline of small or endangered populations and may act to constrain population size, distribution, growth rates, or migration patterns. Further, diseases may provide selective pressures that shape the genetic diversity of populations or species. Thus, understanding disease dynamics and selective pressures from pathogens is crucial to understanding population processes, managing wildlife diseases, and conserving biological diversity. There is ample evidence that variation in the prion protein gene (PRNP) impacts host susceptibility to prion diseases. Still, little is known about how genetic differences might influence natural selection within wildlife populations. Here we link genetic variation with differential susceptibility of white-tailed deer to chronic wasting disease (CWD), with implications for fitness and disease-driven genetic selection. We developed a single nucleotide polymorphism (SNP) assay to efficiently genotype deer at the locus of interest (in the 96th codon of the PRNP gene). Then, using a Bayesian modeling approach, we found that the more susceptible genotype had over four times greater risk of CWD infection; and, once infected, deer with the resistant genotype survived 49% longer (8.25 more months). We used these epidemiological parameters in a multi-stage population matrix model to evaluate relative fitness based on genotype-specific population growth rates. The differences in disease infection and mortality rates allowed genetically resistant deer to achieve higher population growth and obtain a long-term fitness advantage, which translated into a selection coefficient of over 1% favoring the CWD-resistant genotype. This selective pressure suggests that the resistant allele could become dominant in the population within an evolutionarily short time frame. Our work provides a rare example of a quantifiable disease-driven selection process in a wildlife population, demonstrating the potential for infectious diseases to alter host populations. This will have direct bearing on the epidemiology, dynamics, and future trends in CWD transmission and spread. Understanding genotype-specific epidemiology will improve predictive models and inform management strategies for CWD-affected cervid populations.

Ecological Applications↗
USGS2013

Species of conservation concern and environmental stressors: Local regional and global effects

Species conservation has traditionally been based on individual species within the context of their requisite habitat, which is generally defined as the communities and ecosystems deemed necessary for their presence. Conservation decisions are hampered by the fact that environmental stressors that poetically threaten the persistence of species can operate at organizational levels larger than the habitat or home range of a focal species. Resource managers must therefore simultaneously consider local, regional, and/or global scale stressors for effective conservation and management of species of concern. The wide ranging effects associated with global stressors such as climate change may exceed or exacerbate the effects of local or regional stressors, they still need to understand the direct and interactive effects of global stressors and ultimately how they affect the lands they manage. Conservation of species in southern Nevada is further complication by the fact that the region includes one of the largest and fastest growing urban centers in North America. To accomplish the goal of species conservation, resource managers must identify actionable management options that mitigate the effects of local and regional stressor in the context of the effects of global stressors that are beyond their control. Species conservation is typically focused on a subset often referred to as species of conservation concern that have either demonstrated considerable decline or are naturally rare or have limited distributions. Stressors can directly and indirectly impact species in a variety of ways and through a diversity of mechanisms. Some stressors have been more intense in the past (e.g., livestock grazing) whereas other are now only emerging as new stressors (e.g., solar energy development, climate change). The primary stressors affecting southern Nevada ecosystems are listed in table 2.1 and reviewed in detail in Chapter 2. This chapter addresses Dub-goal 1.4 in the SNAP Science Research Strategy which is to sustain and enhance southern Nevada's biotic communities to preserve biodiversity wand maintain viable populations (table 1.3; Turner and others 2009). We provide numerous examples of how stressors affect the range and/or habitat of select species of conservation concern. It is important to note that the species or groups discussed in this chapter by no means represent a comprehensive treatment of all species of conservation concern listed in Table 1.2 (Chapter 1). Rather, several species were chosen as examples for each southern Nevada ecosystem type to illustrate how stressors and linkages among them can affect species of conservation concern, keeping in mind that many of the species considered here are found in more than one ecosystem type. In addition, the stressors that may impact a species in one ecosystem may not be those that affect it in another ecosystem and different species in the same ecosystem may not be affected by the same suite of stressors. Finally, at the start of each ecosystem section we summarize key resource concerns, species used as examples, key stressors, and potential synergistic effects of those stressors relative to the species example.

Nevada↗
USGS2014

Predicting fine-scale distributions of peripheral aquatic species in headwater streams

Headwater species and peripheral populations that occupy habitat at the edge of a species range may hold an increased conservation value to managers due to their potential to maximize intraspecies diversity and species' adaptive capabilities in the context of rapid environmental change. The southern Appalachian Mountains are the southern extent of the geographic range of native Salvelinus fontinalis and naturalized Oncorhynchus mykiss and Salmo trutta in eastern North America. We predicted distributions of these peripheral, headwater wild trout populations at a fine scale to serve as a planning and management tool for resource managers to maximize resistance and resilience of these populations in the face of anthropogenic stressors. We developed correlative logistic regression models to predict occurrence of brook trout, rainbow trout, and brown trout for every interconfluence stream reach in the study area. A stream network was generated to capture a more consistent representation of headwater streams. Each of the final models had four significant metrics in common: stream order, fragmentation, precipitation, and land cover. Strahler stream order was found to be the most influential variable in two of the three final models and the second most influential variable in the other model. Greater than 70% presence accuracy was achieved for all three models. The underrepresentation of headwater streams in commonly used hydrography datasets is an important consideration that warrants close examination when forecasting headwater species distributions and range estimates. Additionally, it appears that a relative watershed position metric (e.g., stream order) is an important surrogate variable (even when elevation is included) for biotic interactions across the landscape in areas where headwater species distributions are influenced by topographical gradients.

Ecology and Evolution↗
USGS2022

Evolutionary dynamics inform management interventions of a hanging garden obligate, Carex specuicola

Uncovering the historical and contemporary processes shaping rare species with complex distributions is of growing importance due to threats such as habitat destruction and climate change. Species restricted to specialized, patchy habitat may persist by virtue of life history characteristics facilitating ongoing gene flow and dispersal, but they could also reflect the remnants of formerly widespread, suitable habitat that existed during past climate regimes. If formerly widespread species did not rely upon traits facilitating high dispersibility to persist, contemporary populations could be at high risk of extirpation or extinction. Fortunately, genomic investigations provide an opportunity to illuminate such alternative scenarios while simultaneously offering guidance for future management interventions. Herein, we test the role of these mechanisms in shaping patterns of genomic diversity and differentiation across a highly restricted and rare ecosystem: desert hanging gardens. We focus on Carex specuicola (Cyperaceae), a hanging garden obligate narrowly distributed in the Four Corners region of the southwestern United States that is listed as Threatened under the United States Endangered Species Act. Population structure and diversity analyses reveal that hanging garden populations are shaped by strong genetic drift, but that individuals in gardens are occasionally more closely related to individuals at other gardens than to individuals within the same garden. Similarly, gardens separated by long geographic distances may contain individuals that are more closely related compared to individuals in gardens separated by short geographic distances. Demographic modeling supports historical gene flow between some contemporary garden pairs, which is corroborated by low estimates of inbreeding coefficients and recent divergence times. As such, multiple lines of evidence support dispersal and gene flow across C. specuicola populations at both small and large spatial scales, indicating that even if C. specuicola was formerly more widespread, it may be well suited to persist in hanging gardens so long as suitable habitat remains available. Analyses like those demonstrated herein may be broadly applicable for understanding the short- and long-term evolutionary processes influencing rare species, and especially those having complex distributions across heterogeneous landscapes.

Arizona, Utah↗
USGS2003

Occurrence and distribution of nutrients, suspended sediment, and pesticides in the Mobile River Basin, Alabama, Georgia, Mississippi, and Tennessee, 1999-2001

The Mobile River Basin is one of more than 50 river basins and aquifer systems being investigated as part of the U.S. Geological Survey's National Water- Quality Assessment (NAWQA) Program. This basin is the sixth largest river basin in the United States and the fourth largest in terms of streamflow. The Mobile River Basin encompasses parts of Alabama, Georgia, Mississippi, and Tennessee, and almost two-thirds of the 44,0000-square-mile basin is located in Alabama. The extensive water resources of the Mobile River Basin are influenced by an array of natural and cultural factors, which impart unique and variable qualities to the streams, rivers, and aquifers and provide abundant habitat to sustain the diverse aquatic life in the basin. From January 1999 to December 2001, a study was conducted of the occurrence and distribution of nutrients, suspended sediment, and pesticides in surface water of the Mobile River Basin. Nine sampling sites were selected on the basis of land use. The nine sites included two streams draining agricultural areas, two urban streams, and five large rivers with mixed land use. Surface-water samples were collected from one to four times each month to characterize the spatial and temporal variation in nutrient and pesticide concentrations. Nutrient and suspended-sediment concentrations were highest in watersheds dominated by urban or agricultural land uses. Forty-two percent of the total phosphorus concentrations at all nine sites exceeded the U.S. Environmental Protection Agency's recommended maximum concentration of 0.1 milligram per liter. Flow-weighted mean concentrations at the Mobile River Basin sites generally were in the lower to middle percentile ranges compared with data from other NAWQA studies across the Nation. However, flow-weighted mean concentrations of ammonia, total nitrogen, orthophosphate, and total phosphorus at Bogue Chitto Creek, an agricultural watershed, ranked in the upper 20th percentile of agricultural sites sampled across the Nation as part of the NAWQA Program. Nutrient loads in the Tombigbee River were nearly twice as high compared with nutrient loads in the Alabama River. Nutrient yields were highest in Bogue Chitto Creek, Cahaba Valley Creek, and Threemile Branch because of agricultural and urban land uses in these watersheds. Of the 104 pesticides and degradation products analyzed in the stream samples, 69 were detected in one or more samples. Of the 69 detected pesticides, 51 were herbicides, 15 were insecticides, and 3 were fungicides. A relatively small number of heavily used herbicides accounted for most of the detections, including atrazine and its metabolites (deethylatrazine, 2-hydroxyatrazine, deisopropylatrazine, and deethyldeisopropylatrazine), simazine, metolachlor, tebuthiuron, prometon, diuron, and 2,4-D. Diazinon, chlorpyrifos, and carbaryl were the most frequently detected insecticides; metalaxyl was the most frequently detected fungicide in the Mobile River Basin. Concentrations of pesticides detected in surface water of the Mobile River Basin were among the highest concentrations recorded nationally by the NAWQA Program during 1991 to 2001. The three highest concentrations of atrazine detected at sites across the country were recorded at Bogue Chitto Creek; the highest concentrations of 2,4-D, imazaquin, and malathion recorded nationally were detected at Threemile Branch. Aquatic-life criteria were exceeded by concentrations of five herbicides (2,4-D, atrazine, cyanazine, diuron, and metolachlor), six insecticides (carbaryl, chlorpyrifos, diazinon, dieldrin, malathion, and p,p'-DDE), and one fungicide (chlorothalonil). Drinking-water standards were exceeded by concentrations of four herbicides (2,4-D, atrazine, cyanazine, and simazine), three insecticides (alpha- HCH, diazinon, and dieldrin), and one fungicide (chlorothalonil). The types and concentrations of pesticides found in surface water are linked to land use and to the types of pesti

Alabama, Georgia, Mississippi, Tennessee↗
USGS2026

Distributions of host heterogeneity in susceptibility show signatures of pathogen geographic structure in an insect baculovirus

Segregated variation between populations is a fundamental evolutionary process leading to parasite specialization, yet the resulting impacts on infection heterogeneity within populations are theoretically and empirically understudied. We asked whether the distribution of host susceptibility to infection within populations carries the signatures of geographic structure from pathogen local adaptation, maladaptation, or generalism in a nuclear polyhedrosis virus that infects the Gulf Fritillary butterfly Dione vanillae . For this virus, there is genetic support for two geographically distinct groups within San Diego County, based on whole genome sequencing of 16 virus isolates. Reciprocal laboratory infections showed evidence of two contrasting viral life history strategies: a ‘generalist’ phenotype that consistently infected variable hosts and a ‘specialist’ that performed slightly better in its local host population. As predicted by our theoretical model, the more consistent infection displayed by the generalist across populations corresponded to lower heterogeneity in susceptibility within populations, modeled as gamma distribution. Furthermore, the generalist phenotype was collected over a wider geographic range despite having a tenfold-lower mean infection rate than the specialist, suggesting that a strategy of more consistent infection provides key fitness advantages across diverse host populations. Intriguingly, when there is variation in host susceptibility, interpretations of pathogen local adaptation are dose-dependent. Measuring infectivity across multiple doses enables estimation of the whole distribution of susceptibility, which provides more reliable identification of pathogen specialization to its local host. Our work demonstrates how trait distributions and not only their mean values can carry quantifiable signatures of eco-evolutionary processes in interspecific interactions.

BioRxiv↗
USGS2013

Parasites affect food web structure primarily through increased diversity and complexity

Comparative research on food web structure has revealed generalities in trophic organization, produced simple models, and allowed assessment of robustness to species loss. These studies have mostly focused on free-living species. Recent research has suggested that inclusion of parasites alters structure. We assess whether such changes in network structure result from unique roles and traits of parasites or from changes to diversity and complexity. We analyzed seven highly resolved food webs that include metazoan parasite data. Our analyses show that adding parasites usually increases link density and connectance (simple measures of complexity), particularly when including concomitant links (links from predators to parasites of their prey). However, we clarify prior claims that parasites ‘‘dominate’’ food web links. Although parasites can be involved in a majority of links, in most cases classic predation links outnumber classic parasitism links. Regarding network structure, observed changes in degree distributions, 14 commonly studied metrics, and link probabilities are consistent with scale-dependent changes in structure associated with changes in diversity and complexity. Parasite and free-living species thus have similar effects on these aspects of structure. However, two changes point to unique roles of parasites. First, adding parasites and concomitant links strongly alters the frequency of most motifs of interactions among three taxa, reflecting parasites’ roles as resources for predators of their hosts, driven by trophic intimacy with their hosts. Second, compared to free-living consumers, many parasites’ feeding niches appear broader and less contiguous, which may reflect complex life cycles and small body sizes. This study provides new insights about generic versus unique impacts of parasites on food web structure, extends the generality of food web theory, gives a more rigorous framework for assessing the impact of any species on trophic organization, identifies limitations of current food web models, and provides direction for future structural and dynamical models.

PLoS Biology↗
USGS2014

Carnivore distributions across chaparral habitats exposed to wildfire and rural housing in southern California

Chaparral and coastal sage scrub habitats in southern California support biologically diverse plant and animal communities. However, native plant and animal species within these shrubland systems are increasingly exposed to human-caused wildfires and an expansion of the human–wildland interface. Few data exist to evaluate the effects of fire and anthropogenic pressures on plant and animal communities found in these environments. This is particularly true for carnivore communities. To address this knowledge gap, we collected detection–non-detection data with motion-sensor cameras and track plots to measure carnivore occupancy patterns following a large, human-caused wildfire (1134 km 2 ) in eastern San Diego County, California, USA, in 2003. Our focal species set included coyote ( Canis latrans ), gray fox ( Urocyon cinereoargenteus ), bobcat ( Lynx rufus ) and striped skunk ( Mephitis mephitis ). We evaluated the influence on species occupancies of the burned environment (burn edge, burn interior and unburned areas), proximity of rural homes, distance to riparian area and elevation. Gray fox occupancies were the highest overall, followed by striped skunk, coyote and bobcat. The three species considered as habitat and foraging generalists (gray fox, coyote, striped skunk) were common in all conditions. Occupancy patterns were consistent through time for all species except coyote, whose occupancies increased through time. In addition, environmental and anthropogenic variables had weak effects on all four species, and these responses were species-specific. Our results helped to describe a carnivore community exposed to frequent fire and rural human residences, and provide baseline data to inform fire management policy and wildlife management strategies in similar fire-prone ecosystems.

California↗
USGS2018

Molecular and morphometric analyses reveal cryptic diversity within freshwater mussels (Bivalvia: Unionidae) of the western Gulf coastal drainages of the USA

Past geological processes and climate change affected current species distributions and the genetic structure of riverine fauna. Western Gulf of Mexico coastal rivers harbour four mussel species within the genus Fusconaia (Bivalvia: Unionida). The distributions of these species are unclear owing to their indistinguishable shell morphologies. Using molecular phylogenetic and Fourier morphometric analyses, we examined phylogenetic relationships and morphological variation among the species and made inferences about the role of past geological and climatic factors in shaping the current genetic structure and distributions of these species in the region. Our results showed the presence of three Fusconaia species within the region: Fusconaia askewi , Fusconaia chunii and Fusconaia flava . We confirmed that Fusconaia lananensis is a junior synonym of F. askewi and that F. chunii is genetically distinct from F. askewi . The Trinity River has syntopic F. flava whose morphologies are indistinguishable from those of F. chunii . Divergence-time estimates matched major geological and climatic events in the region, where climate-driven river formations during the mid-Miocene to Pleistocene caused major diversification of Fusconaia species. Knowledge gained from the present study provides a better understanding of vicariant events that shaped current species distributions and helps to identify conservation priorities that apply to the Fusconaia species.

Biological Journal of the Linnean Society↗
USGS2021

The influence of species life history and distribution characteristics on species responses to habitat fragmentation in an urban landscape

Fragmentation within urbanized environments often leads to a loss of native species diversity; however, variation exists in responses among-species and among-populations within species. We aimed to identify patterns in species biogeography in an urbanized landscape to understand anthropogenic effects on vertebrate communities and identify species that are more sensitive or resilient to landscape change. We investigated patterns in species richness and species responses to fragmentation in southern Californian small vertebrate communities using multispecies occupancy models and determined factors associated with overall commonness and sensitivity to patch size for 45 small vertebrate species both among and within remaining non-developed patches. In general, smaller patches had fewer species, with amphibian species richness being particularly sensitive to patch size effects. Mammals were generally more common, occurring both in a greater proportion of patches and a higher proportion of the sites within occupied patches. Alternatively, amphibians were generally restricted to larger patches but were more ubiquitous within smaller patches when occupied. Species range size was positively correlated with how common a species was across and within patches, even when controlling for only patches that fell within a species' range. We found sensitivity to patch size was greater for more fecund species and depended on where the patch occurred within a species' range. While all taxa were more likely to occur in patches in the warmer portions of their ranges, amphibians and mammals were more sensitive to fragmentation in these warmer areas as compared to the rest of their ranges. Similarly, amphibians occurred at a smaller proportion of sites within patches in drier portions of their ranges. Mammals occurred at a higher proportion of sites that were also in drier portions of their range while reptiles did not differ in their sensitivity to patch size by range position. We demonstrate that taxonomy, life history, range size and range position can predict commonness and sensitivity of species across this highly fragmented yet biodiverse landscape. The impacts of fragmentation on species communities within an urban landscape depend on scale, with differences emerging among and within species and populations.

California↗
USGS2018

The rise of pinnacle reefs: Islands of diversity in seas of despair

Pinnacle reef tracts are geomorphic features of carbonate systems that originated in the early Silurian and display an episodic distribution into the Cenozoic. Detailed study of Silurian pinnacle reefs of the United States midcontinent demonstrates repeated motifs, but most enigmatic is the coincidence of carbonate carbon isotope (δ 13 C carb ) excursions and reef pulses. Silurian δ 13 C carb excursions were associated with environmental changes and extinctions, and reefs appear to mark a resurgence of conditions favorable to biomineralizers following those extinction events. Previous workers in the region identified six discrete reef origination events in the United States midcontinent during the Silurian. Our reevaluation of outcrops and cores, conodont collections, and the generation of considerable new chemostratigraphic data across the region are clarifying the age relations of these events and their relationships to perturbations of the global carbon cycle.

Book chapter↗
USGS2002

Wetland macroinvertebrates of Prentiss Bay, Lake Huron, Michigan: diversity and functional group composition

The Great Lakes support many fish and waterbirds that depend directly or indirectly on coastal wetlands during some portion of their life cycle. It is known that macroinvertebrates make up an important part of wetland food webs and ecosystem function; however, our understanding of species distribution within and among wetlands has only recently received attention. We investigated the macroinvertebrates of a freshwater marsh (Prentiss Bay) in the Les Chenaux Island Area of Northern Lake Huron, Michigan. Macroinvertebrate taxa diversity and functional feeding group composition were compared between two habitats. A shallow depositional habitat with higher vegetation diversity and little wave action was compared to a deeper erosional habitat with fewer plant species and more wave action. A total of 83 taxa were collected over the summer of 1996, representing two phyla (Arthropoda and Mollusca) and five classes (Arachnida, Bivalvia, Malacostraca, Gastropoda and Insecta). A total of 79 genera were identified, with 92% being insects (39 families composed of at least 73 genera). Of the total, 42 insect genera were common to both habitats,while relatively fewer were collected exclusively from the erosional compared the depositional habitat. When habitats were pooled, predators comprised about 50% of the functional group taxa, while gathering collectors and shredders each were about 20%. Filtering collectors and scrapers each represented < 10%. When comparing habitats, there was a relatively higher percentage of predators and shredders in the depositional habitat, while all other functional groups were lower. These data suggest that vegetation diversity, depth and wave action affect taxa composition and functional group organization of the Prentiss Bay marsh.

Great Lakes Entomologist↗
USGS2021

Connectivity between lentic and lotic freshwater habitats identified as a conservation priority for coho salmon

Juvenile Pacific salmon exhibit diverse habitat use and migration strategies to navigate high environmental variability and predation risk during freshwater residency. Increasingly, urbanization and climate-driven hydrological alterations are affecting the availability and quality of aquatic habitats in salmon catchments. Thus, conservation of freshwater habitat integrity has emerged as an important challenge in supporting salmon life-history diversity as a buffer against continuing ecosystem changes. To inform catchment management for salmon, information on the distribution and movement dynamics of juvenile fish throughout the annual seasonal cycle is needed. A number of studies have assessed the ecology of juvenile coho salmon ( Oncorhynchus kisutch ) during summer and autumn seasons; catchment use by this species throughout the annual cycle is less well characterized, particularly in high-latitude systems. Here, n = 3,792 tagged juvenile coho salmon were tracked throughout two complete annual cycles to assess basin-wide distribution and movement behaviour of this species in a subarctic, ice-bearing catchment. Juvenile coho salmon in the Big Lake basin, Alaska, exhibited multiple habitat use and movement strategies across seasons; however, summer rearing in lotic mainstem environments followed by migration to lentic overwinter habitats was identified as a prominent behaviour, with two-thirds of tracked fish migrating en masse to concentrate in a small subset of upper catchment lakes for the winter. In contrast, the most significant tributary overwintering site (8% of tracked fish) occurred below a culvert and dam, blocking juvenile fish passage to a headwater lake, indicating that these fish may have been restricted from reaching preferred lentic overwinter habitats. These findings emphasize the importance of maintaining aquatic connectivity to lentic habitats as a conservation priority for coho salmon during freshwater residency.

Aquatic Conservation: Marine and Freshwater Ecosys↗
USGS2021

Investigating the morphological and genetic divergence of arctic char (Salvelinus alpinus) populations in lakes of arctic Alaska

Polymorphism facilitates coexistence of divergent morphs (e.g., phenotypes) of the same species by minimizing intraspecific competition, especially when resources are limiting. Arctic char ( Salvelinus sp.) are a Holarctic fish often forming morphologically, and sometimes genetically, divergent morphs. In this study, we assessed the morphological and genetic diversity and divergence of 263 individuals from seven populations of arctic char with varying length-frequency distributions across two distinct groups of lakes in northern Alaska. Despite close geographic proximity, each lake group occurs on landscapes with different glacial ages and surface water connectivity, and thus was likely colonized by fishes at different times. Across lakes, a continuum of physical (e.g., lake area, maximum depth) and biological characteristics (e.g., primary productivity, fish density) exists, likely contributing to characteristics of present-day char populations. Although some lakes exhibit bimodal size distributions, using model-based clustering of morphometric traits corrected for allometry, we did not detect morphological differences within and across char populations. Genomic analyses using 15,934 SNPs obtained from genotyping by sequencing demonstrated differences among lake groups related to historical biogeography, but within lake groups and within individual lakes, genetic differentiation was not related to total body length. We used PERMANOVA to identify environmental and biological factors related to observed char size structure. Significant predictors included water transparency (i.e., a primary productivity proxy), char density (fish·ha -1 ), and lake group. Larger char occurred in lakes with greater primary production and lower char densities, suggesting less intraspecific competition and resource limitation. Thus, char populations in more productive and connected lakes may prove more stable to environmental changes, relative to food-limited and closed lakes, if lake productivity increases concomitantly. Our findings provide some of the first descriptions of genomic characteristics of char populations in arctic Alaska, and offer important consideration for the persistence of these populations for subsistence and conservation.

Alaska↗