SEARCH · Geology Reports

Results for “Acoustics”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 451 records · Page 25Linked to original sources

USGS2024

Feature-based maximum entropy for geophysical properties of the seabed

The coherent recombination of a direct and seabed reflected path is sensitive to the geophysical properties of the seabed. The concept of feature-based inversion is used in the analysis of acoustic data collected on a vertical line array (VLA) on the New England continental shelf break in about 200 m of water. The analysis approach for the measurements is based on a ray approach in which a direct and bottom reflected path is recombined, resulting in constructive and destructive interference of the acoustic amplitudes with frequency. The acoustic features have the form of prominent nulls of the measured received levels as a function of frequency as a broadband (500–4500 Hz) source passes the closest point of approach to the VLA. The viscous grain shearing (VGS) model is employed to parameterize a two-layer seabed model. The most likely seabed is a sand sediment with a porosity of about 0.42. There is a possibility of a thin (less than 0.5 m) surface layer having a slightly higher porosity between 0.45 and 0.50. Using the estimates for the VGS parameters inferred from the short-range frequency features, a normal mode model is used to predict the received acoustic levels over larger range scales.

Journal of the Acoustical Society of America↗

USGS2018

Observer-free experimental evaluation of habitat and distance effects on the detection of anuran and bird vocalizations

Acoustic surveys of vocalizing animals are conducted to determine density, distribution, and diversity. Acoustic surveys are traditionally performed by human listeners, but automated recording devices (ARD) are becoming increasingly popular. Signal strength decays, or attenuates, with increasing distance between source and receiver and some habitat types may differentially increase attenuation beyond the effects of distance alone. These combined effects are rarely accounted for in acoustic monitoring programs. We evaluated the performance of three playback devices and three ARD models using the calls of six anurans, six birds, and four pure tones. Based on these evaluations, we determined the optimal playback and recording devices. Using these optimal devices, we broadcast and recorded vocalizations in five habitat types along 1,000 m transects. We used generalized linear models to test for effects of habitat, distance, species, environmental, and landscape variables. We predicted detection probabilities for each vocalization, in each habitat type, from 0 to 1,000 m. Among playback devices, only a remote predator caller simulated vocalizations consistently. Differences of ~10 dB were observed among ARDs. For all species, we found differences in detectability between open and closed canopy habitats. We observed large differences in predicted detection probability among species in each habitat type, as well as along 1,000 m transects. Increases in temperature, barometric pressure, and wind speed significantly decreased detection probability. However, aside from differences among species, habitat, and distance, topography impeding a line‐of‐sight between sound source and receiver had the greatest negative influence on detections. Our results suggest researchers should model the effects of habitat, distance, and frequency on detection probability when performing acoustic surveys. To optimize survey design, we recommend pilot measurements among varying habitats.

Ecology and Evolution↗

USGS2022

Statistical assessment on determining local presence of rare bat species

Surveying cryptic, sparsely distributed taxa using autonomous recording units, although cost-effective, provides imperfect knowledge about species presence. Summertime bat acoustic surveys in North America exemplify the challenges with characterizing sources of uncertainty: observation error, inability to census populations, and natural stochastic variation. Statistical uncertainty, if not considered thoroughly, hampers determining rare species presence accurately and/or estimating rangewide status and trends with suitable precision. Bat acoustic data are processed using an automated workflow in which proprietary or open-source algorithms assign a species label to each recorded high-frequency echolocation sequence. A false-negative occurs, if a species is actually present but not recorded and/or all recordings from the species are of such poor quality that a correct species identity cannot be assigned to any observation. False positives for a focal species are a direct result of the presence and incorrect identification of a recording from another species. We compare four analytical approaches in terms of parameter estimation and their resulting (in)correct decisions regarding species presence or absence using realistic data-generating scenarios for bat acoustic data within a simulation study. The current standard for deciding species presence or absence uses a multinomial likelihood-ratio test p value (maximum likelihood estimate [MLE]-metric) that accounts for known species misidentifications, but not imperfect detection and only returns a binary outcome (evidence of presence or not). We found that the MLE-metric had estimated median correct decisions less than 60% for presence and greater than 85% for absence. Alternatively, a multispecies count detection model was equivalent to or better than the MLE-metric for correct claims of rare species presence or absence using the posterior probability a species was present at a site and, importantly, provided unbiased estimates of relative activity and probability of occurrence, creating opportunities for reducing posterior uncertainty through the inclusion of meaningful covariates. Single-species occupancy models with and without false-positive detections removed were insufficient for determining local presence because of substantially biased occurrence and detection probabilities. We propose solutions to potential barriers for integrating local, short-term and rangewide, long-term acoustic surveys within a cohesive statistical framework that facilitates determining local species presence with uncertainty concurrent with estimating species–environment relationships.

Ecosphere↗

USGS2026

Cook Inlet beluga whale calling varies by group characteristics, behavior, and tidal state

Communication allows social species to exchange information among group members. In aquatic environments, acoustic signals are among the most effective forms of communication and are important for many species, including cetaceans. Beluga whales ( Delphinapterus leucas ) are highly social and vocal, yet little is known about the functionality of their social calls. To examine context-dependent vocal behavior in belugas, we collected passive acoustic data and fine-scale behavioral observations for the endangered Cook Inlet beluga population. The resulting dataset includes 1,720 annotated vocalizations collected over 21 behaviorally encoded encounters. We fit generalized linear mixed models to these data to investigate the effect of behavioral state, group size, calf presence, and tidal state on (1) calling rate (number of calls/minute) and (2) call category (whistles, pulsed calls, combined calls). Belugas were more likely to call when traveling and had higher calling rates during flood tides. Group-level calling rate increased sublinearly with group size, suggesting that individuals called less in larger groups, possibly reflecting increased listening, vocal coordination, or a strategy to avoid acoustic masking. Group calling rate increased before transitions between traveling and milling, suggesting a possible link between communication and behavioral transitions. Whistles were more prevalent when traveling, while pulsed calls were more prevalent when milling. Combined calls occurred only when calves were present, indicating the importance of these calls in communication with calves. Identifying these communication patterns and the contexts in which they occur can enhance our understanding of beluga whale ecology and aid in conservation efforts via passive acoustic monitoring.

Alaska↗

USGS2013

Use of classification trees to apportion single echo detections to species: Application to the pelagic fish community of Lake Superior

Acoustic methods are used to estimate the density of pelagic fish in large lakes with results of midwater trawling used to assign species composition. Apportionment in lakes having mixed species can be challenging because only a small fraction of the water sampled acoustically is sampled with trawl gear. Here we describe a new method where single echo detections (SEDs) are assigned to species based on classification tree models developed from catch data that separate species based on fish size and the spatial habitats they occupy. During the summer of 2011, we conducted a spatially-balanced lake-wide acoustic and midwater trawl survey of Lake Superior. A total of 51 sites in four bathymetric depth strata (0–30 m, 30–100 m, 100–200 m, and >200 m) were sampled. We developed classification tree models for each stratum and found fish length was the most important variable for separating species. To apply these trees to the acoustic data, we needed to identify a target strength to length (TS-to-L) relationship appropriate for all abundant Lake Superior pelagic species. We tested performance of 7 general (i.e., multi-species) relationships derived from three published studies. The best-performing relationship was identified by comparing predicted and observed catch compositions using a second independent Lake Superior data set. Once identified, the relationship was used to predict lengths of SEDs from the lake-wide survey, and the classification tree models were used to assign each SED to a species. Exotic rainbow smelt (Osmerus mordax) were the most common species at bathymetric depths <100 m with their population estimated at 755 million (3.4 kt). Kiyi (Coregonus kiyi) were the most abundant species at depths >100 m (384 million; 6.0 kt). Cisco (Coregonus artedi) were widely distributed over all strata with their population estimated at 182 million (44 kt). The apportionment method we describe should be transferable to other large lakes provided fish are not tightly aggregated, and an appropriate TS-to-L relationship for abundant pelagic fish species can be determined.

Lake Superior↗

USGS2012

Analysis of geophysical well logs obtained in the State 2-14 borehole, Salton Sea geothermal area, California

A complete suite of conventional geophysical well logs was obtained in the upper part of a 3220-m- deep borehole drilled into geothermally altered alluvial sediments on the southeastern edge of the Salton Sea. In situ temperatures greater than 300°C and an inability to cool parts of the borehole by circulation limited the suite of logs run below 2000 m in depth to deep induction, spontaneous potential, un-calibrated neutron, natural gamma, and temperature. Bottom-hole temperature trends given by repeat temperature logs were extrapolated to undisturbed temperatures approaching 355°C at a depth of 3220 m. Geophysical logs obtained in the State 2–14 borehole indicate that neutron porosity, gamma-gamma, and deep-induction logs provide useful information on lithologic trends with depth. The natural gamma log contains almost continuous, high-frequency fluctuations that obscure lithologic trends and that may be related to recent radioisotope redistribution and departure from radiometric equilibrium. Acoustic transit time logs give unrealistically low in situ compressional velocities ranging from 1.8 to 3.0 km/s, whereas acoustic waveform logs indicate that sediment compressional velocities range from less than 3.0 km/s shallower than 1000 m in depth to almost 5.0 km/s at depths greater than 2000 m. Analyses indicate that most log values lie between two lithologic end points: an electrically conductive claystone with moderate neutron porosity, but no effective porosity, and an electrically nonconductive, fully cemented siltstone that has small but finite porosity. A limited number of clean sandstones depart from this trend; geophysical logs from these sandstones indicate an effective porosity ranging from 5 to 14%, and saturation with brines having equivalent NaCl concentrations greater than 100,000 mg/L. Depth- averaged trends in neutron porosity and deep-induction logs, along with trends in acoustic velocity determined from acoustic waveform logs, demonstrate that major changes in the properties of alluvial sediments occur within the depth range from 1200 to 1800 m. Although caliper logs were not obtained deeper than 2000 m, resistivity values less than 10 ohm m at those depths probably correspond to borehole enlargements in production zones rather than local increases in effective porosity. The transition in sediment properties indicated by the geophysical logs in the depth interval from 1200 to 2000 m apparently represents a detailed vertical profile of the transition from relatively unaltered clay minerals in alluvial sediments to electrically nonconductive alteration products such as epidote and feldspar.

Journal of Geophysical Research Solid Earth↗

USGS2022

In situ recording of Mars soundscape

Prior to the Perseverance rover landing, the acoustic environment of Mars was unknown. Models predicted that: (i) atmospheric turbulence changes at centimeter scales or smaller at the point where molecular viscosity converts kinetic energy into heat 1 , (ii) the speed of sound varies at the surface with frequency 2,3 , and (iii) high frequency waves are strongly attenuated with distance in CO 2 2–4 . However, theoretical models were uncertain because of a lack of experimental data at low pressure, and the difficulty to characterize turbulence or attenuation in a closed environment. Here using Perseverance microphone recordings, we present the first characterization of Mars’ acoustic environment and pressure fluctuations in the audible range and beyond, from 20 Hz to 50 kHz. We find that atmospheric sounds extend measurements of pressure variations down to 1,000 times smaller scales than ever observed before, revealing a dissipative regime extending over 5 orders of magnitude in energy. Using point sources of sound (Ingenuity rotorcraft, laser-induced sparks), we highlight two distinct values for the speed of sound that are ~10 m/s apart below and above 240 Hz, a unique characteristic of low-pressure CO 2 -dominated atmosphere. We also provide the acoustic attenuation with distance above 2 kHz, allowing us to elucidate the large contribution of the CO 2 vibrational relaxation in the audible range. These results establish a ground truth for modelling of acoustic processes, which is critical for studies in atmospheres like Mars and Venus ones.

Nature↗

USGS2022

High-rate very-long-period seismicity at Yasur volcano, Vanuatu: source mechanism and decoupling from surficial explosions and infrasound

Yasur volcano, Vanuatu is a continuously active open-vent basaltic-andesite stratocone with persistent and long-lived eruptive activity. We present results from a seismo-acoustic field experiment at Yasur, providing locally dense broad-band seismic and infrasonic network coverage from 2016 July 27 to August 3. We corroborate our seismo-acoustic observations with coincident video data from cameras deployed at the crater and on an unoccupied aircraft system (UAS). The waveforms contain a profusion of signals reflecting Yasur’s rapidly occurring and persistent explosive activity. The typical infrasonic signature of Yasur explosions is a classic short-duration and often asymmetric explosion waveform characterized by a sharp compressive onset and wideband frequency content. The dominant seismic signals are numerous repetitive very-long-period (VLP) signals with periods of ∼2–10 s. The VLP seismic events are ‘high-rate’, reoccurring near-continuously throughout the data set with short interevent times (∼20–60 s). We observe variability in the synchronization of seismic VLP and acoustic sources. Explosion events clearly delineated by infrasonic waveforms are underlain by seismic VLPs. However, strong seismic VLPs also occur with only a weak infrasonic expression. Multiplet analysis of the seismic VLPs reveals a systematic progression in the seismo-acoustic source decoupling. The same dominant seismic VLP multiplet occurs with and without surficial explosions and infrasound, and these transitions occur over a timescale of a few days during our field campaign. We subsequently employ template matching, stacking, and full-waveform inversion to image the source mechanism of the dominant VLP multiplet. Inversion of the dominant VLP multiplet stack points to a composite source consisting of either a dual-crack (plus forces) or pipe-crack (plus forces) mechanism. The derived mechanisms correspond to a point-source directly beneath the summit vents with centroid depths in the range ∼900–1000 m below topography. All mechanisms suggest a northeast trending crack dipping relatively shallowly to the northwest and indicate a VLP source centroid and mechanism controlled by a stable structural geologic feature beneath Yasur. We interpret the results in the framework of gas slug ascent through the conduit responsible for Yasur explosions. The VLP mechanism and timing with infrasound (when present) are explained by a shallow-buffered top-down model in which slug ascent is relatively aseismic until reaching the base of a shallow section. Slug disruption in this shallow zone triggers a pressure disturbance that propagates downward and couples at the conduit base (VLP centroid). If the shallow section is open, an explosion propagates to the surface, producing infrasound. In the case of (the same multiplet) VLPs occurring without surficial explosions and weak or no infrasound, the decoupling of the dominant VLPs at ∼900–1000 m depth from surficial explosions and infrasound strongly indicates buffering of the terminal slug ascent. This buffering could be achieved by a variety of conditions at or directly beneath the vents, such as a high-viscosity layer of crystal-rich magma, a debris cap from backfill, a foam layer, or a combination of these. The dominant VLP at Yasur captured by our experiment has a source depth and mechanism separated from surface processes and is stable over time.

Geophysical Journal International↗

USGS2025

Infrasonic directivity of monopole, dipole, and bipole ground-surface reflected sources

Infrasound (acoustic waves below 20 Hz) can be used to detect, locate and quantify activity in the atmosphere such as volcanic eruptions and anthropogenic explosions. Attempts to quantify volcanic eruption parameters such as exit velocity, plume height and mass flow rate using infrasound data depend strongly on assumptions of the acoustic source type. Infrasonic sources may produce omnidirectional or directional wavefields, while propagation effects, such as interaction with topography, can induce further wavefield directivity that is measured by field instrumentation. Limited sampling of these wavefields can hinder our ability to infer the underlying source, and thus our understanding of the eruption characteristics. Equivalent sources are often used to represent acoustic source mechanisms and resultant wavefields. In this study, we review equivalent acoustic sources as they pertain to infrasonic scale and wavelengths commonly encountered in very local ( ⁠< 5 km range) geophysical field deployments. We highlight the equivalent infrasonic bipole source that can be induced by ground-reflection of an elevated monopole; we are not aware of any prior infrasound studies that use the bipole source concept. We use analytical and numerical methods to explore source directivity of monopole, dipole and bipole ground-reflected sources at infrasonic frequencies as well as the additional directivity complications introduced by interactions with topography. We illustrate that for typical volcano-infrasound wavelengths, increasing height above the ground as well as increasing source frequency leads to increased wavefield directivity. Numerical modelling using a simple omnidirectional monopole source embedded in topography further illustrates that both horizontal and vertical infrasound directionality can be induced by topography at the distance scales appropriate for local volcano infrasound monitoring. Information summarized in this analytical and numerical exploration of infrasound directivity may be used to help guide future volcano-infrasound field deployments intended to estimate source parameters or quantify wavefield directivity. Analytic solutions for simple whole-space or half-space atmospheres provide useful formulations for planning or initially analysing geophysical field-scale experimental data; however, especially at very local distances from the source ( ⁠< 5 km), 3-D simulations are necessary to account for complex topography commonly encountered in volcano-infrasound applications.

Geophysical Journal International↗

USGS2000

Methods for accurate estimation of net discharge in a tidal channel

Accurate estimates of net residual discharge in tidally affected rivers and estuaries are possible because of recently developed ultrasonic discharge measurement techniques. Previous discharge estimates using conventional mechanical current meters and methods based on stage/discharge relations or water slope measurements often yielded errors that were as great as or greater than the computed residual discharge. Ultrasonic measurement methods consist of: 1) the use of ultrasonic instruments for the measurement of a representative 'index' velocity used for in situ estimation of mean water velocity and 2) the use of the acoustic Doppler current discharge measurement system to calibrate the index velocity measurement data. Methods used to calibrate (rate) the index velocity to the channel velocity measured using the Acoustic Doppler Current Profiler are the most critical factors affecting the accuracy of net discharge estimation. The index velocity first must be related to mean channel velocity and then used to calculate instantaneous channel discharge. Finally, discharge is low-pass filtered to remove the effects of the tides. An ultrasonic velocity meter discharge-measurement site in a tidally affected region of the Sacramento-San Joaquin Rivers was used to study the accuracy of the index velocity calibration procedure. Calibration data consisting of ultrasonic velocity meter index velocity and concurrent acoustic Doppler discharge measurement data were collected during three time periods. Two sets of data were collected during a spring tide (monthly maximum tidal current) and one of data collected during a neap tide (monthly minimum tidal current). The relative magnitude of instrumental errors, acoustic Doppler discharge measurement errors, and calibration errors were evaluated. Calibration error was found to be the most significant source of error in estimating net discharge. Using a comprehensive calibration method, net discharge estimates developed from the three sets of calibration data differed by less than an average of 4 cubic meters per second, or less than 0.5% of a typical peak tidal discharge rate of 750 cubic meters per second.

IEEE Journal of Oceanic Engineering↗

USGS2020

AMMonitor: Remote monitoring of biodiversity in an adaptive framework with R

Ecological research and management programs are increasingly using autonomous monitoring units (AMUs) to collect large volumes of acoustic and/or photo data to address pressing management objectives or research goals. The data management requirements of an AMU-based monitoring effort are often overwhelming, with a considerable amount of processing to translate raw data into models and analyses that have research and management utility. We created the r package AMMonitor to simplify the process of moving from remotely collected data to analysis and results, using a comprehensive SQLite database for data management that tracks all components of a remote monitoring program. This framework enables the tracking of analyses and research/management objectives through time. We illustrate the AMMonitor approach with the example of evaluating an occurrence-based management objective for a target species. First, we provide an overview of the database and data management approach. Next, we illustrate a few available workflows: temporally adaptive sampling, automated detection of species sounds from acoustic recordings and aggregation of automated detections into an encounter history for use in an occupancy analysis, the outcome of which can be analysed with respect to the motivating management objective. Without a comprehensive framework for efficiently moving from raw remote monitoring data collection to results and analysis, monitoring programs are limited in their capacity to systematically characterize ecological processes and inform management decisions through time. AMMonitor provides an option for such a framework. Code, comprehensive documentation, and step-by-step examples are available online at https://code.usgs.gov/vtcfwru/AMMonitor

Methods in Ecology and Evolution↗

USGS2025

Spatial occupancy patterns of the endangered northern long‐eared bat in New England

Aim White-nose syndrome has caused severe declines in eastern North American cave bats, leading to the federal listing of the northern long-eared bat ( Myotis septentrionalis ) as endangered in the United States and Canada. This has heightened the importance of long-term monitoring to inform species status assessments. We employed a combination of long-term repeated and single-season acoustic survey data to assess the regional presence, spatial distribution, occupancy, and detection probability of northern long-eared bats. Location New England, United States. Methods We analysed acoustic data from 2357 detector sites, aggregated by year, using Bayesian single-species occupancy models. We investigated the influence of habitat characteristics, climatic variables, and year (2015–2022) on occupancy and the effects of weather conditions and survey month (May to August) on detection probability. Spatial random effects were included to address residual spatial autocorrelation, with a 1-km resolution chosen based on significant positive autocorrelation observed in a non-spatial model. Results Occupancy was highest on steep, forested hillsides with minimal anthropogenic development, higher in warmer regions, particularly along coastlines and on offshore islands, and declined across survey years. Including a 1-km spatial random effect reduced residual autocorrelation and suggests northern long-eared bats utilise resources at small to medium landscape scales. Detection probability was highest earlier in the maternity season, but declined when monthly precipitation or temperature exceeded average conditions. Conclusions Conservation efforts that focus on steep, forested hillsides in warmer regions with low anthropogenic development could be beneficial. Our analysis supports the use of spatial random effects at a 1-km 2 scale, highlighting the importance of survey designs that capture ecological variation at species-specific resolutions. Additionally, early-season acoustic surveys conducted during favourable weather conditions may improve monitoring effectiveness. Acoustic sampling and spatial occupancy modelling offer powerful tools for monitoring remnant populations of northern long-eared bats and guiding conservation practices.

Connecticut, Maine, Massachusetts, New Hampshire, ↗

USGS2011

Pressure waves in a supersaturated bubbly magma

We study the interaction of acoustic pressure waves with an expanding bubbly magma. The expansion of magma is the result of bubble growth during or following magma decompression and leads to two competing processes that affect pressure waves. On the one hand, growth in vesicularity leads to increased damping and decreased wave amplitudes, and on the other hand, a decrease in the effective bulk modulus of the bubbly mixture reduces wave velocity, which in turn, reduces damping and may lead to wave amplification. The additional acoustic energy originates from the chemical energy released during bubble growth. We examine this phenomenon analytically to identify conditions under which amplification of pressure waves is possible. These conditions are further examined numerically to shed light on the frequency and phase dependencies in relation to the interaction of waves and growing bubbles. Amplification is possible at low frequencies and when the growth rate of bubbles reaches an optimum value for which the wave velocity decreases sufficiently to overcome the increased damping of the vesicular material. We examine two amplification phase-dependent effects: (1) a tensile-phase effect in which the inserted wave adds to the process of bubble growth, utilizing the energy associated with the gas overpressure in the bubble and therefore converting a large proportion of this energy into additional acoustic energy, and (2) a compressive-phase effect in which the pressure wave works against the growing bubbles and a large amount of its acoustic energy is dissipated during the first cycle, but later enough energy is gained to amplify the second cycle. These two effects provide additional new possible mechanisms for the amplification phase seen in Long-Period (LP) and Very-Long-Period (VLP) seismic signals originating in magma-filled cracks.

Geophysical Journal International↗

USGS2020

Detecting commonality in multidimensional fish movement histories using sequence analysis

Background Acoustic telemetry, for tracking fish movement histories, is multidimensional capturing both spatial and temporal domains. Oftentimes, analyses of such data are limited to a single domain, one domain nested within the other, or ad hoc approaches that simultaneously consider both domains. Sequence analysis, on the other hand, offers a repeatable statistical framework that uses a sequence alignment algorithm to calculate pairwise dissimilarities among individual movement histories and then hierarchical agglomerative clustering to identify groups of fish with similar movement histories. The objective of this paper is to explore how acoustic telemetry data can be fit to this statistical framework and used to identify commonalities in the movement histories of acoustic-tagged sea lamprey during upstream migration through the St. Clair-Detroit River System. Results Five significant clusters were identified among individual fish. Clusters represented differences in timing of movements (short vs long duration in the Detroit R. and Lake St. Clair); extent of upstream migration (ceased migration in Lake St. Clair, lower St. Clair R., or upper St. Clair R.), and occurrence of fallback (return to Lake St. Clair after ceasing migration in the St. Clair R.). Inferences about sea lamprey distribution and behavior from these results were similar to those reached in a previous analysis using ad-hoc analysis methods. Conclusions The repeatable statistical framework outlined here can be used to group sea lamprey movement histories based on shared sequence characteristics (i.e., chronological order of “states” occupied). Further, this framework is flexible and allows researchers to define a priori the movement aspect (e.g., order, timing, duration) that is important for identifying both common or previously undetected movement histories. As such, we do not view sequence analysis as a panacea but as a useful complement to other modelling approaches (i.e., exploratory tool for informing hypothesis development) or a stand-alone semi-quantitative method for generating a simplified, temporally and spatially structured view of complex acoustic telemetry data and hypothesis testing when observed patterns warrant further investigation.

Michigan↗

USGS2025

Movements and survival of hatchery reared juvenile cisco (Coregonus artedi) in Saginaw Bay, Lake Huron

Background Cisco ( Coregonus artedi ) were historically abundant throughout Lake Huron, including Saginaw Bay, but only a few remnant populations remain in northern Lake Huron today. Reestablishment of cisco is an important component of management plans to restore sustainable fisheries in Lake Huron. Cisco restoration efforts have focused on the release of hatchery-reared fish, but the fate and behavior of stocked fish after release is unknown. Mortality due to predation and behavior of hatchery-reared fish after release may influence success of restoration stocking programs. Acoustic telemetry tags with predation sensors show promise for tracking movements and survival of juvenile fish; however, guidelines for designing receiver arrays to capture movements and determine the fate of juvenile fish are not well-established. Results We examined whether an acoustic receiver array with approximately 20 km 2 of coverage was sufficient to determine movements and fate of cisco during the first month after release. We implanted 26 juvenile cisco (mean total length = 161 mm) with acoustic tags equipped with a sensor to detect predation. Thirteen fish (50%) moved more than 4 km from the release location and out of the array, seven fish (27%) were consumed by predators while in the array within 17 days of release, and the fates of six fish (23%) were unknown. Of fish that left the array, 50% left between 4 and 7 days after release. No fish were detected after 17 days after release. Cisco moved with water currents during the first day after release, but this was not observed in subsequent days. Concurrent with fish release, detection range was estimated from stationary tags at three locations within the receiver array. Daily estimates of detection range were greater than 50% at 250 m during October 2021. Conclusions This study provides evidence that hatchery-reared juvenile cisco can move more than 4 km within 17 days of release but are vulnerable to predation. To fully quantify sources of mortality and spatial extent of movements by hatchery-reared cisco, future acoustic telemetry studies will require a receiver array designed to track movements of tagged fish and their predators over larger distances than monitored in this study.

Michigan↗

USGS2020

Effects of tidally varying river flow on entrainment of juvenile salmon into Sutter and Steamboat Sloughs

Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management actions (e.g., fish guidance structures) to modify routing probabilities at this location. Main Content View Larger 1 Sponsored by the Delta Science Program and the UC Davis Muir Institute ABSTRACT Survival of juvenile salmonids in the Sacramento–San Joaquin Delta (Delta) varies by migration route, and thus the proportion of fish that use each route affects overall survival through the Delta. Understanding factors that drive routing at channel junctions along the Sacramento River is therefore critical to devising management strategies that maximize survival. Here, we examine entrainment of acoustically tagged juvenile Chinook Salmon into Sutter and Steamboat sloughs from the Sacramento River. Because these sloughs divert fish away from the downstream entrances of the Delta Cross Channel and Georgiana Slough (where fish access SFEWS Volume 19 | Issue 2 | Article 4 https://doi.org/10.15447/sfews.2021v19iss2art4 * Corresponding author: rperry@usgs.gov 1 Western Fisheries Research Center US Geological Survey Cook, WA 98605 USA 2 California Water Science Center US Geological Survey Sacramento, CA 95819 USA 3 Current address: Mid-Columbia Fish and Wildlife Conservation Office Yakima Basin Program US Fish and Wildlife Service Yakima, WA 98903 USA the low-survival region of the interior Delta), management actions to increase fish entrainment into Sutter and Steamboat sloughs are being investigated to increase through-Delta survival. Previous studies suggest that fish generally “go with the flow”—as net flow into a divergence increases, the proportion of fish that enter that divergence correspondingly increases. However, complex tidal hydrodynamics at sub-daily time-scales may be decoupled from net flow. Therefore, we modeled routing of acoustic tagged juvenile salmon as a function of tidally varying hydrodynamic data, which was collected using temporary gaging stations deployed between March and May of 2014. Our results indicate that discharge, the proportion of flow that entered the slough, and the rate of change of flow were good predictors of an individual’s probability of being entrained. In addition, interactions between discharge and the proportion of flow revealed a non-linear relationship between flow and entrainment probability. We found that the highest proportions of fish are likely to be entrained into Steamboat Slough and Sutter Slough on the ascending and descending limbs of the tidal cycle, when flow changes from positive to negative. Our findings characterize how patterns of entrainment vary with tidal flow fluctuations, providing information critical for understanding the potential effect of management RESEARCH Effects of Tidally Varying River Flow on Entrainment of Juvenile Salmon into Sutter and Steamboat Sloughs Jason G. Romine 1,3 , Russell W. Perry* 1 , Paul R. Stumpner 2 , Aaron R. Blake 2 , Jon R. Burau 2 2 VOLUME 19, ISSUE 2, ARTICLE 4 actions (e.g., fish guidance structures) to modify routing probabilities at this location. KEY WORDS Telemetry, juvenile salmon, migration routing, survival INTRODUCTION The Sacramento–San Joaquin River Delta (hereafter referred to as “the Delta”) is a complex series of channels and embayments in west central California of the United States. The Delta has undergone drastic transformation through construction of dikes, levees, reclaimed land, dredged canals and cuts, and water export projects (Nichols et al. 1986). The loss of habitat coupled with introduction of non-native piscivorous fishes has led to the decline of several salmonid stocks that utilize the Delta (Lindley 2009; National Marine Fisheries Service 2014). The physical complexity of the Delta poses significant challenges for understanding how juvenile salmon negotiate the complex channel network and survive in different migration routes. Yet such information is critical for understanding how water-management actions, such as operation of water diversions, influence survival of juvenile salmon. Through-Delta survival of juvenile Chinook Salmon that emigrate from the Sacramento River ranges from 10% to 80%, depending on river flow and migration route (Perry et al. 2018). The Delta can be broken down into four primary routes: (1) Sacramento River, (2) Steamboat and Sutter sloughs, (3) Georgiana Slough, and (4) Delta Cross Channel (DCC). Fish that remain in the Sacramento River consistently have the highest survival (Perry et al. 2010, 2013, 2018). However, fish that enter the interior Delta—the region to the south of the Sacramento River (Figure 1)—have the lowest survival among all routes and survive at less than half the rate of fish in the Sacramento River, likely as a result of longer migration times and exposure to non-native predators (Newman and Brandes 2010; Perry et al. 2018). On average, fish that migrate through Steamboat and Sutter sloughs exhibit survival similar to fish that remain in the Sacramento River at high flows but have lower survival at low flows (Perry et al. 2018). Because of differences in survival among migration routes, the proportion of fish that use each route affects the total survival of the population. Therefore, understanding the drivers behind fish routing in the Delta is imperative to inform management actions that help in the recovery of imperiled salmonid populations in the Central Valley. For example, Perry et al. (2013) found that total survival through the Delta could be increased by up to 7 percentage points by eliminating entrainment into Georgiana Slough and the DCC. These findings led to investigation of management actions to reduce entrainment into the DCC (Plumb et al. 2016) and Georgiana Slough (Perry et al. 2014). Both physical and non-physical barriers have been tested at the entrance to Georgiana Slough divergence (Perry et al. 2014; Romine et al. 2016). A non-physical barrier was able to reduce entrainment to the interior Delta through Georgiana Slough (Perry et al. 2014), but a floating fish-guidance structure reduced entrainment to a lesser extent (Romine et al. 2016). Research and engineering solutions to minimize entrainment have focused on the Georgiana Slough divergence, the DCC divergence, and the Old River divergence in the San Joaquin River (Buchanan et al. 2013; SJRG 2013). However, there has been little focus on understanding fish routing dynamics at other primary river junctions in the Delta, such as Sutter and Steamboat sloughs. Sutter and Steamboat sloughs diverge from the Sacramento about 10 km upstream from the DCC and Georgiana slough, and represent the first major junction that juvenile salmon encounter as they enter the Delta from the Sacramento River ( Figure 1 ). Because Sutter and Steamboat sloughs are upstream of the entrance to the interior Delta via the DCC and Georgiana Slough (Figure 1), juvenile salmon that enter Sutter and Steamboat sloughs avoid entrainment into the interior Delta where survival is low. Thus, management actions to increase entrainment could increase overall.

Sacramento–San Joaquin Delta↗

USGS2001

Gas hydrate estimation error associated with uncertainties of measurements and parameters

Downhole log measurements such as acoustic or electrical resistivity logs are often used to estimate in situ gas hydrate concentrations in sediment pore space. Estimation errors owing to uncertainties associated with downhole measurements and the parameters for estimation equations (weight in the acoustic method and Archie?s parameters in the resistivity method) are analyzed in order to assess the accuracy of estimation of gas hydrate concentration. Accurate downhole measurements are essential for accurate estimation of the gas hydrate concentrations in sediments, particularly at low gas hydrate concentrations and when using acoustic data. Estimation errors owing to measurement errors, except the slowness error, decrease as the gas hydrate concentration increases and as porosity increases. Estimation errors owing to uncertainty in the input parameters are small in the acoustic method and may be signifi cant in the resistivity method at low gas hydrate concentrations.

Bulletin↗

USGS2009

Archive of digital boomer and CHIRP seismic reflection data collected during USGS field activity 08LCA03 in Lake Panasoffkee, Florida, May 2008

In May of 2008, the U.S. Geological Survey (USGS) conducted geophysical surveys in Lake Panasoffkee, located in central Florida, as part of the USGS Lakes and Coastal Aquifers (LCA) study. This report serves as an archive of unprocessed digital boomer and Compressed High Intensity Radar Pulse (CHIRP)* seismic reflection data, trackline maps, navigation files, Field Activity Collection System (FACS) logs, Geographic Information System (GIS) files, and formal Federal Geographic Data Committee (FGDC) metadata. Filtered and gained (a relative increase in signal amplitude) digital images of the seismic profiles and geospatially corrected interactive profiles are also provided. Refer to the Acronyms page for expansions of acronyms and abbreviations used in this report. *Due to poor data acquisition conditions associated with the lake bottom sediments, only two CHIRP tracklines were collected during this field activity. The archived trace data are in standard Society of Exploration Geophysicists (SEG) SEG-Y format (Barry and others, 1975) and may be downloaded and processed with commercial or public domain software such as Seismic Unix (SU). Example SU processing scripts and USGS software for viewing the SEG-Y files (Zihlman, 1992) are provided. The USGS Florida Integrated Science Center (FISC) - St. Petersburg assigns a unique identifier to each cruise or field activity. For example, 08LCA03 tells us the data were collected in 2008 for the Lakes and Coastal Aquifers (LCA) study and the data were collected during the third field activity for that study in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity ID. The naming convention used for each seismic line is as follows: yye##a, where 'yy' are the last two digits of the year in which the data were collected, 'e' is a 1-letter abbreviation for the equipment type (for example, b for boomer and c for CHIRP), '##' is a 2-digit number representing a specific track, and 'a' is a letter representing the section of a line if recording was prematurely terminated or rerun for quality or acquisition problems. The boomer plate is an acoustic energy source that consists of capacitors charged to a high voltage and discharged through a transducer in the water. The transducer is towed on a sled floating on the water surface and, when discharged, emits a short acoustic pulse, or shot, which propagates through the water, sediment column, or rock beneath. The acoustic energy is reflected at density boundaries (such as the seafloor, sediment, or rock layers beneath the seafloor), detected by the receiver, and recorded by a PC-based seismic acquisition system. This process is repeated at timed intervals (for example, 0.5 s) and recorded for specific intervals of time (for example, 100 ms). In this way, a two-dimensional (2-D) vertical profile of the shallow geologic structure beneath the ship track is produced. Figure 1 displays the boomer acquisition geometry. The EdgeTech SB-424 CHIRP system used for this survey has a vertical resolution of 4 - 8 cm, a penetration depth that is usually less than 2 m beneath the seafloor, and uses a signal of continuously varying frequency. The towfish is a sound source and receiver, which is typically towed 2 - 5 m above the seafloor. The acoustic energy is reflected at density boundaries (such as the seafloor or sediment layers beneath the seafloor), detected by a receiver, and recorded by a PC-based seismic acquisition system. This process is repeated at timed intervals (for example, 0.125 s) and recorded for specific intervals of time (for example, 50 ms); the resulting profile is a two-dimensional vertical image of the shallow geologic structure beneath the ship track. Figure 2 displays the acquisition geometry for the CHIRP system. Refer to table 1 for a summary of acquisition parameters and table 2 for trackline statistics.

Florida↗