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Louisiana Barrier Island Comprehensive Monitoring (BICM) Program Summary Report: Data and Analyses 2006 through 2010

The Barrier Island Comprehensive Monitoring (BICM) program was implemented under the Louisiana Coastal Area Science and Technology (LCA S&T) office as a component of the System Wide Assessment and Monitoring (SWAMP) program. The BICM project was developed by the State of Louisiana (Coastal Protection Restoration Authority [CPRA], formerly Department of Natural Resources [DNR]) to complement other Louisiana coastal monitoring programs such as the Coastwide Reference Monitoring System-Wetlands (CRMS-Wetlands) and was a collaborative research effort by CPRA, University of New Orleans (UNO), and the U.S. Geological Survey (USGS). The goal of the BICM program was to provide long-term data on the barrier islands of Louisiana that could be used to plan, design, evaluate, and maintain current and future barrier-island restoration projects. The BICM program used both historical and newly acquired (2006 to 2010) data to assess and monitor changes in the aerial and subaqueous extent of islands, habitat types, sediment texture and geotechnical properties, environmental processes, and vegetation composition. BICM datasets included aerial still and video photography (multiple time series) for shoreline positions, habitat mapping, and land loss; light detection and ranging (lidar) surveys for topographic elevations; single-beam and swath bathymetry; and sediment grab samples. Products produced using BICM data and analyses included (but were not limited to) storm-impact assessments, rate of shoreline and bathymetric change, shoreline-erosion and accretion maps, high-resolution elevation maps, coastal-shoreline and barrier-island habitat-classification maps, and coastal surficial-sediment characterization maps. Discussions in this report summarize the extensive data-collection efforts and present brief interpretive analyses for four coastal Louisiana geographic regions. In addition, several coastal-wide and topical themes were selected that integrate the data and analyses within a broader coastal context: (1) barrier-shoreline evolution driven by rapid relative sea-level rise (RSLR), (2) hurricane impacts to the Chandeleur Islands and likelihood of island recovery, (3) impact of tropical storms on barrier shorelines, (4) Barataria Bay tidal-inlet management, and (5) habitat changes related to RSLR. The final theme addresses potential future goals of the BICM program, including rotational annual to semi-decadal monitoring, proposed new-data collection, how to incorporate technological advances with previous data-collection and monitoring protocols, and standardizing methods and quality-control assessments for continued coastal monitoring and restoration.

Louisiana

Methods of analysis by the U.S. Geological Survey Organic Geochemistry Research Group: Determination of triazine and phenylurea herbicides and their degradation products in water using solid-phase extraction and liquid chromatography/mass spectrometry

An analytical method for the determination of 7 triazine and phenylurea herbicides and 12 of their degradation products in natural water samples using solid-phase extraction and liquid chromatography/mass spectrometry is presented in this report. Special consideration was given during the development of the method to prevent the formation of degradation products during the analysis. Filtered water samples were analyzed using 0.5 gram graphitized carbon as the solid-phase extraction media followed by liquid chromatography/mass spectrometry. Three different water-sample matrices ground-water, surface-water, and reagent-water samples?spiked at 0.2 and 2.0 micrograms per liter were analyzed. Method detection limits ranged from 0.013 to 0.168 microgram per liter for the parent triazine herbicides and the triazine degradation products. Method detection limits ranged from 0.042 to 0.141 microgram per liter for the parent phenylurea herbicides and their degradation products. Mean recoveries for the triazine compounds in the ground- and surface-water samples generally ranged from 72.6 to 117.5 percent, but deethyl-cyanazine amide was recovered at 140.5 percent. Mean recoveries from the ground- and surface-water samples for the phenylurea compounds spiked at the 2.0-micrograms-per-liter level ranged from 82.1 to 114.4 percent. The mean recoveries for the phenylureas spiked at 0.2-microgram per liter were less consistent, ranging from 87.0 to 136.0 percent. Mean recoveries from reagent-water samples ranged from 87.0 to 109.5 percent for all compounds. The triazine compounds and their degradation products are reported in concentrations ranging from 0.05 to 2.0 micrograms per liter, with the exception of deethylcyanazine and deethylcyanazine amide which are reported at 0.20 to 2.0 micrograms per liter. The phenylurea compounds and their degradation products are reported in concentrations ranging from 0.20 to 2.0 micrograms per liter. The upper concentration limit was 2.0 micrograms per liter for all compounds without dilution.

Open-File Report

Understanding the influence of nutrients on stream ecosystems in agricultural landscapes

Sustaining the quality of the Nation’s water resources and the health of our diverse ecosystems depends on the availability of sound water-resources data and information to develop effective, science-based policies. Effective management of water resources also brings more certainty and efficiency to important economic sectors. Taken together, these actions lead to immediate and long-term economic, social, and environmental benefits that make a difference to the lives of the almost 400 million people projected to live in the United States by 2050. In 1991, Congress established the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) to address where, when, why, and how the Nation’s water quality has changed, or is likely to change in the future, in response to human activities and natural factors. Since then, NAWQA has been a leading source of scientific data and knowledge used by national, regional, State, and local agencies to develop science-based policies and management strategies to improve and protect water resources used for drinking water, recreation, irrigation, energy development, and ecosystem needs ( https://water.usgs.gov/nawqa/applications/ ). Plans for the third decade of NAWQA (2013–23) address priority water-quality issues and science needs identified by NAWQA stakeholders, such as the Advisory Committee on Water Information and the National Research Council, and are designed to meet increasing challenges related to population growth, increasing needs for clean water, and changing land-use and weather patterns. Excess nutrients are a pervasive problem of streams, lakes, and coastal waters. The current report, “The Quality of Our Nation’s Waters—Understanding the Effects of Nutrients on Stream Ecosystems in Agricultural Landscapes,” presents a summary of results from USGS investigations conducted from 2003 to 2011 on processes that influence nutrients and how nutrient enrichment can alter biological components of agricultural streams. This study included collecting data from 232 sites distributed among eight study areas. This report summarizes findings on processes that influence nutrients and how nutrient enrichment can alter biological communities in agricultural streams. These findings are relevant to local, State, regional, and national decision-makers involved in efforts to (1) better understand the influence of nutrients on agricultural streams, (2) develop nutrient criteria for streams and rivers, (3) reduce nutrients to streams and downstream receiving waters, and (4) develop tools for tracking nutrient and biological conditions following nutrient reduction strategies. All NAWQA reports are available online at https://water.usgs.gov/nawqa/bib/ . We hope this publication will provide you with insights and information to meet your water-resource needs and will foster increased citizen awareness and involvement in the protection and restoration of our Nation’s waters. The information in this report is intended primarily for those interested or involved in resource management and protection, conservation, regulation, and policymaking at the regional and national levels.

Central Columbia-Yakima River Basins, Great River

Evaluation of Terrestrial LIDAR for Monitoring Geomorphic Change at Archeological Sites in Grand Canyon National Park, Arizona

This report presents the results of an evaluation of terrestrial light detection and ranging (LIDAR) for monitoring geomorphic change at archeological sites located within Grand Canyon National Park, Ariz. Traditionally, topographic change-detection studies have used total station methods for the collection of data related to key measurable features of site erosion such as the location of thalwegs and knickpoints of gullies that traverse archeological sites (for example, Pederson and others, 2003). Total station methods require survey teams to walk within and on the features of interest within the archeological sites to take accurate measurements. As a result, site impacts may develop such as trailing, damage to cryptogamic crusts, and surface compaction that can exacerbate future erosion of the sites. National Park Service (NPS) resource managers have become increasingly concerned that repeated surveys for research and monitoring purposes may have a detrimental impact on the resources that researchers are trying to study and protect. Beginning in 2006, the Sociocultural Program of the U.S. Geological Survey's (USGS) Grand Canyon Monitoring and Research Center (GCMRC) initiated an evaluation of terrestrial LIDAR as a new monitoring tool that might enhance data quality and reduce site impacts. This evaluation was conducted as one part of an ongoing study to develop objective, replicable, quantifiable monitoring protocols for tracking the status and trend of variables affecting archeological site condition along the Colorado River corridor. The overall study consists of two elements: (1) an evaluation of the methodology through direct comparison to geomorphologic metrics already being collected by total station methods (this report) and (2) an evaluation of terrestrial LIDAR's ability to detect topographic change through the collection of temporally different datasets (a report on this portion of the study is anticipated early in 2009). The main goals of the first element of study were to 1. test the methodology and survey protocols of terrestrial LIDAR surveying under actual archeological site field conditions, 2. examine the ability to collect topographic data of entire archeological sites given such constraints as vegetation and rough topography, and 3. evaluate the ability of terrestrial LIDAR to accurately map the locations of key geomorphic features already being collected by total station methods such as gully thalweg and knickpoint locations. This report focuses on the ability of terrestrial LIDAR to duplicate total station methods, including typical erosion-related change features such as the plan view gully thalweg location and the gully thalweg long profile. The report also presents information concerning the use of terrestrial LIDAR for archeological site monitoring in a general sense. In addition, a detailed comparison of the site impacts caused by both total station and terrestrial LIDAR survey methods is presented using a suite of indicators, including total field survey time, field footstep count, and data-processing time. A thorough discussion of the relative benefits and limitations of using terrestrial LIDAR for monitoring erosion-induced changes at archeological sites in Grand Canyon National Park concludes this report.

Open-File Report

U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center-Fiscal Year 2009 Annual Report

The Earth Resources Observation and Science (EROS) Center is a U.S. Geological Survey (USGS) facility focused on providing science and imagery to better understand our Earth. As part of the USGS Geography Discipline, EROS contributes to the Land Remote Sensing (LRS) Program, the Geographic Analysis and Monitoring (GAM) Program, and the National Geospatial Program (NGP), as well as our Federal partners and cooperators. The work of the Center is shaped by the Earth sciences, the missions of our stakeholders, and implemented through strong program and project management and application of state-of-the-art information technologies. Fundamentally, EROS contributes to the understanding of a changing Earth through 'research to operations' activities that include developing, implementing, and operating remote sensing based terrestrial monitoring capabilities needed to address interdisciplinary science and applications objectives at all levels-both nationally and internationally. The Center's programs and projects continually strive to meet and/or exceed the changing needs of the USGS, the Department of the Interior, our Nation, and international constituents. The Center's multidisciplinary staff uses their unique expertise in remote sensing science and technologies to conduct basic and applied research, data acquisition, systems engineering, information access and management, and archive preservation to address the Nation's most critical needs. Of particular note is the role of EROS as the primary provider of Landsat data, the longest comprehensive global land Earth observation record ever collected. This report is intended to provide an overview of the scientific and engineering achievements and illustrate the range and scope of the activities and accomplishments at EROS throughout fiscal year (FY) 2009. Additional information concerning the scientific, engineering, and operational achievements can be obtained from the scientific papers and other documents published by EROS staff. We welcome comments and follow-up questions on any aspect of this Annual Report and invite any of our customers or partners to contact us at their convenience. To communicate with us, or for more information about EROS, contact: Communications and Outreach, USGS EROS Center, 47914 252nd Street, Sioux Falls, South Dakota 57198, jsnelson@usgs.gov, http://eros.usgs.gov/.

Open-File Report

Bibliography of water-quality studies in Gateway National Recreation Area, New York and New Jersey

The U.S. Geological Survey (USGS) provided technical assistance to the National Park Service (NPS) as part of the USGS-NPS Water-Quality Partnership, by gathering references related to water-quality research conducted in the three units of Gateway National Recreation Area (GATE): Jamaica Bay and Staten Island in New York, and Sandy Hook in New Jersey. As part of this effort, a literature search was performed to compile previous water-quality research conducted within the boundaries of GATE. The resulting bibliography is meant to assist GATE resource managers in understanding the extent of available data and developing plans to close data gaps.

New Jersey, New York

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Great Plains Regional Information Sheet.

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Kansas, Montana, Nebraska, North Dakota, Oklahoma,

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Pacific Northwest Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Idaho, Oregon, Washington

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Northeast Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Connecticut, Delaware, Maine, Maryland, Massachuse

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Alaska and the Arctic Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Alaska

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Hawaii and Pacific Islands Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Hawai‘i

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Southwest Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Arizona, California, Colorado, Nevada, New Mexico,

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Midwest Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Illinois, Indiana, Iowa, Michigan, Minnesota, Miss

Observed changes in phenology across the USA: A regional review for the 2013 National Climate Assessment, Southeast Regional Information Sheet

This is one in a series of eight, geographic region-focused information sheets that summarizes documented changes in plant and animal phenology over the past century across the United States. This summary is based on long-term studies (10 years or more) published in the primary scientific literature since 2001. A forthcoming manuscript synthesizes the findings of the eight regional information sheets. This information was developed in support of the U.S. Global Change Research Program’s National Climate Assessment and can be used to facilitate preparation for the cascading effects of ongoing climate change.

Alabama, Arkansas, Florida, Georgia, Kentucky, Lou

The National Map customer requirements: Findings from interviews and surveys

The purpose of this study was to receive customer feedback and to understand data and information requirements for The National Map. This report provides results and findings from interviews and surveys and will guide policy and operations decisions about data and information requirements leading to the development of a 5-year strategic plan for the National Geospatial Program. These findings are based on feedback from approximately 2,200 customers between February and August 2008. The U.S. Geological Survey (USGS) conducted more than 160 interviews with 200 individuals. The American Society for Photogrammetry and Remote Sensing (ASPRS) and the International Map Trade Association (IMTA) surveyed their memberships and received feedback from over 400 members. The Environmental Systems Research Institute (ESRI) received feedback from over 1,600 of its U.S.-based software users through an online survey sent to customers attending the ESRI International User Conference in the summer of 2008. The results of these surveys were shared with the USGS and have been included in this report.

Open-File Report

Effects of noise from oil and gas development on ungulates and small mammals—A science synthesis to inform National Environmental Policy Act analyses

The U.S. Geological Survey is working with Federal land management agencies to develop a series of science syntheses to support environmental effects analyses that agencies conduct to comply with the National Environmental Policy Act (NEPA). This report synthesizes science information about the potential effects of noise from oil and gas development on North American ungulates and small mammals, including rodents and leporids. We conducted a structured search of published scientific literature to find information about noise levels produced during oil and gas development, methods for analyzing sound propagation, the effects of noise on ungulates and small mammals, and measures to reduce noise emissions. We organized the sections of this synthesis to align with standard elements of NEPA analyses. We found that oil and gas development is a common source of human-caused noise on public lands and includes noise sources such as heavy construction and drilling machinery, long-term production machinery, truck traffic, and aircraft. Common techniques for predicting potential noise include field data collection using a sound level meter, inference from previously published data, and sound propagation modeling. A substantial body of research shows that human-caused noise can affect wildlife health and behavior, with variation in sensitivity to noise among species. Studies have shown consistent, detectable effects of noise on ungulates, but the amount of literature on ungulates is very small, and additional research could improve our understanding of differences in effects among species, seasons, and individual indicators of fitness. Several species of small mammals are dependent on audible signals for predator detection and communication, and noise has been shown to affect their vigilance and foraging behavior. However, other studies have documented no effects to rodents in noisy areas, and the effects of noise on small mammals may differ by species and study system. Techniques suggested in the literature for reducing noise emissions include sound barriers, seasonal and daily timing restrictions, traffic control measures, and siting infrastructure to take advantage of natural sound barriers. Public land managers can use this report by incorporating it by reference in NEPA documentation, as supplemental information, or as a general reference for literature about the effects of noise from oil and gas development on ungulates and small mammals.

Scientific Investigations Report

Exxon Valdez oil spill long-term herring research and monitoring program final report

This study includes annual field surveys of Ichthyophonus, viral hemorrhagic septicemia virus, and erythrocytic necrosis virus in adult and juvenile Pacific herring (Clupea pallasii) in Prince William Sound, Alaska and several reference populations in Alaska, British Columbia, and Washington. Results from controlled experimental studies with Ichthyophonus indicated that: • Pacific herring could become infected after repeated feedings on simulated infected offal, • Gross external signs of ichthyophoniasis can persist for extended periods without causing direct host mortality, • A novel tool (chromogenic in situ hybridization) was developed to confirm the presence of Ichthyophonus in histological sections, • A circulating stage of Ichthyophonus was detected in the blood of infected hosts, • Ichthyophonus remains viable in a fish carcass for up to 4 weeks and remains infectious for at least 5 days post mortem, • Six distinct genetic types of Ichthyophonus were identified in different hosts throughout the world, • Tissue explant culture was confirmed to be more sensitive than qPCR for detecting low - intensity Ichthyophonus infections directly from fish tissues. Results from controlled experimental studies with viral hemorrhagic septicemia virus indicated that: • Cooler temperatures are more conducive to viral hemorrhagic septicemia epizootics in Pacific herring, • A blocking ELISA was developed to detect fish antibodies to viral hemorrhagic septicemia virus, • A more sensitive plaque neutralization test was optimized to detect herring neutralizing antibodies to viral hemorrhagic septicemia virus, • The relative susceptibility of Pacific herring to other viral hemorrhagic septicemia virus genotypes was assessed, experimental spill-over, amplification, and spill-back was demonstrated between Atlantic salmon (Salmo salar) and Pacific herring, • The efficacy of homologous and heterologous DNA vaccines against viral hemorrhagic septicemia virus was demonstrated in Pacific herring. Controlled experimental studies with erythrocytic necrosis virus resulted in the development of a conventional PCR technique that is capable of the virus in the blood and the development of a quantitative PCR technique that is capable of detecting the virus in any herring tissues.

Report

System characterization report on the German Aerospace Center (DLR) Earth Sensing Imaging Spectrometer (DESIS)

Executive Summary This report addresses system characterization of the German Aerospace Center (DLR) Earth Sensing Imaging Spectrometer (DESIS) and is part of a series of system characterization reports produced and delivered by the U.S. Geological Survey Earth Resources Observation and Science Cal/Val Center of Excellence. These reports present the methodology and procedures for characterization and the technical and operational information about the specific sensing system being evaluated. These reports also provide a description of data measurements, data retention practices, and data analysis results and provide system characterization conclusions. In partnership with Teledyne Brown Engineering, DLR built the DESIS hyperspectral instrument, which Teledyne Brown Engineering then integrated onto its International Space Station-based imaging platform, the Multi-User System for Earth Sensing. DLR developed the processing software and, together with Innovative Imaging and Research, completes the validation and calibration of the data products. DESIS was launched in 2018, and the data are used for scientific research in atmospheric physics and Earth sciences. The DESIS sensor contributes to the scientific and commercial utilization of the International Space Station and helps to further hyperspectral remote sensing technologies for future satellites. More information on DLR satellites and sensors is included within the “2020 Joint Agency Commercial Imagery Evaluation—Remote Sensing Satellite Compendium” and at https://www.dlr.de/DE/Home/home_node.html . The Earth Resources Observation and Science Cal/Val Center of Excellence system characterization team completed data analyses to characterize the geometric (interior and exterior), radiometric, and spatial performances. Results of these analyses indicate that DESIS has an interior geometric performance of less than a 3.30-meter (less than 0.11 pixel) root mean square error in band-to-band registration, an exterior geometric performance in the range of a 2.40- (0.08 pixel) to 17.40-meter (0.58 pixel) offset in comparison to the Landsat 8 Operational Land Imager, a radiometric performance in the range of −0.013 to 1.011 (offset and slope), and a spatial performance for band 130 of 1.5 pixels at full width at half maximum, with a modulation transfer function at a Nyquist frequency of 0.167.

Open-File Report