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At least 433 records · Page 24Linked to original sources
USGS2020

Nontuberculous mycobacterial disease and molybdenum in Colorado watersheds

Nontuberculous mycobacteria (NTM) are environmental bacteria that may cause chronic lung disease. Environmental factors that favor NTM growth likely increase the risk of NTM exposure within specific environments. We aimed to identify water-quality constituents (Al, As, Cd, Ca, Cu, Fe, Pb, Mg, Mn, Mo, Ni, K, Se, Na, Zn, and pH) associated with NTM disease across Colorado watersheds. We conducted a geospatial, ecological study, associating data from patients with NTM disease treated at National Jewish Health and water-quality data from the Water Quality Portal. Water-quality constituents associated with disease risk were identified using generalized linear models with Poisson-distributed discrete responses. We observed a highly robust association between molybdenum (Mo) in the source water and disease risk. For every 1- unit increase in the log concentration of molybdenum in the source water, disease risk increased by 17.0%. We also observed a statistically significant association between calcium (Ca) in the source water and disease risk. The risk of NTM varied by watershed and was associated with watershed-specific water-quality constituents. These findings may inform mitigation strategies to decrease the overall risk of exposure.

Colorado↗
USGS1976

Landslides - Cause and effect

Landslides can cause seismic disturbances; landslides can also result from seismic disturbances, and earthquake-induced slides have caused loss of life in many countries. Slides can cause disastrous flooding, particularly when landslide dams across streams are breached, and flooding may trigger slides. Slope movement in general is a major process of the geologic environment that places constraints on engineering development. In order to understand and foresee both the causes and effects of slope movement, studies must be made on a regional scale, at individual sites, and in the laboratory. Areal studies — some embracing entire countries — have shown that certain geologic conditions on slopes facilitate landsliding; these conditions include intensely sheared rocks; poorly consolidated, fine-grained clastic rocks; hard fractured rocks underlain by less resistant rocks; or loose accumulations of fine-grained surface debris. Field investigations as well as mathematical- and physical-model studies are increasing our understanding of the mechanism of slope movement in fractured rock, and assist in arriving at practical solutions to landslide problems related to all kinds of land development for human use. Progressive failure of slopes has been studied in both soil and rock mechanics. New procedures have been developed to evaluate earthquake response of embankments and slopes. The finite element method of analysis is being extensively used in the calculation of slope stability in rock broken by joints, faults, and other discontinuities.

Bulletin of the International Association of Engin↗
USGS2001

Effects of Landsat 5 Thematic Mapper and Landsat 7 Enhanced Thematic Mapper plus radiometric and geometric calibrations and corrections on landscape characterization

The Thematic Mapper (TM) instruments onboard Landsats 4 and 5 provide high-quality imagery appropriate for many different applications, including land cover mapping, landscape ecology, and change detection. Precise calibration was considered to be critical to the success of the Landsat 7 mission and, thus, issues of calibration were given high priority during the development of the Enhanced Thematic Mapper Plus (ETM+). Data sets from the Landsat 5 TM are not routinely corrected for a number of radiometric and geometric artifacts, including memory effect, gain/bias, and interfocal plane misalignment. In the current investigation, the effects of correcting vs. not correcting these factors were investigated for several applications. Gain/bias calibrations were found to have a greater impact on most applications than did memory effect calibrations. Correcting interfocal plane offsets was found to have a moderate effect on applications. On June 2, 1999, Landsats 5 and 7 data were acquired nearly simultaneously over a study site in the Niobrara, NE area. Field radiometer data acquired at that site were used to facilitate crosscalibrations of Landsats 5 and 7 data. Current findings and results from previous investigations indicate that the internal calibrator of Landsat 5 TM tracked instrument gain well until 1988. After this, the internal calibrator diverged from the data derived from vicarious calibrations. Results from this study also indicate very good agreement between prelaunch measurements and vicarious calibration data for all Landsat 7 reflective bands except Band 4. Values are within about 3.5% of each other, except for Band 4, which differs by 10%. Coefficient of variation (CV) values derived from selected targets in the imagery were also analyzed. The Niobrara Landsat 7 imagery was found to have lower CV values than Landsat 5 data, implying that lower levels of noise characterize Landsat 7 data than current Landsat 5 data. It was also found that following radiometric normalization, the Normalized Difference Vegetation Index (NDVI) imagery and classification products of Landsats 5 and 7 were very similar. This implies that data from the two sensors can be used to measure and monitor the same landscape phenomena and that Landsats 5 and 7 data can be used interchangeably with proper caution. In addition, it was found that difference imagery produced using Landsat 7 ETM+ data are of excellent quality.

Remote Sensing of Environment↗
USGS2016

Organic petrology and geochemistry of mudrocks from the lacustrine Lucaogou Formation, Santanghu Basin, northwest China: Application to lake basin evolution

Exploration for tight oil in the frontier Santanghu Basin of northwest China has resulted in recent commercial discoveries sourced from the lacustrine Upper Permian Lucaogou Formation, already considered a “world class source rock” in the Junggar Basin to the west. Here we apply an integrated analytical program to carbonate-dominated mudrocks from the Lucaogou Formation in Santanghu Basin to document the nature of organic matter (OM) in the context of an evolving lake system. The organic-rich samples (TOC 2.8–11.4 wt%; n = 10) were widely spaced from an ~ 200 m cored section, interpreted from textural and mineralogical evidence to document transition from a lower under-filled to an overlying balanced-filled lake. Organic matter is dominated by moderate to strongly fluorescent amorphous material with Type I geochemical signature (HI values 510–755; n = 10) occurring in a continuum from lamellar stringers, 10–20 μm thick, some ≥ 1 mm in length (possible microbial mat; preserved only in lower under-filled section) to finely-disseminated amorphous groundmass intimately intermixed with mineral matrix. Biomarkers for methanotrophs and photosynthetic cyanobacteria indicate a complex microbial consortium. A unicellular prasinophyte green alga(?), similar to Tasmanites in marine rocks, is present as discrete flattened discs 50–100 μm in diameter. Type III OM including vitrinite (some fluorescent) and inertinite also is abundant. Solid bitumen, indicating local kerogen conversion, fills voids and occurs throughout the cored section. Vitrinite reflectance values are 0.47–0.58%, consistent with strong OM fluorescence but may be “suppressed”. Other proxies, e.g., biomarker parameters, indicate the Lucaogou Formation is in the early oil window at this location. On average, slightly more amorphous OM and telalginite are present in the lower section, consistent with a shallow, stratified, saline environment with low sediment dilution. More inertinite is present in the upper section, indicating greater terrestrial influx and consistent with higher quartz and plagioclase content (dominantly authigenic chalcedony and albite). Laminated mudstones in the upper section indicate anoxia prevented bioturbation from benthic grazing, also indicating stratified water column conditions. A decrease upsection in authigenic dolomite with reciprocal increase of ankerite/siderite is consistent with decreasing salinity, as is an overall decrease in gammacerane index values. These observations suggest evolution from a shallow, stratified evaporative (saline) setting to a deeper, stratified freshwater basin with higher water input during Lucaogou deposition. The evolution from an under-filled to balance-filled lake in Santanghu Basin is similar to Lucaogou deposition in Junggar Basin, suggesting similar tectonic and climatic controls. Paleoclimate interpretations from other researchers in this area suggested an evolution from semi-arid to humid conditions during the Roadian; we interpret that the evolution from an under-filled to balanced-filled lake seen in our data is in response to climate change, and may represent increased groundwater delivery to the Santanghu Basin.

International Journal of Coal Geology↗
USGS2019

Mapping cropland extent of Southeast and Northeast Asia using multi-year time-series Landsat 30-m data using Random Forest classifier on Google Earth Engine

Cropland extent maps are useful components for assessing food security. Ideally, such products are a useful addition to countrywide agricultural statistics since they are not politically biased and can be used to calculate cropland area for any spatial unit from an individual farm to various administrative unites (e.g., state, county, district) within and across nations, which in turn can be used to estimate agricultural productivity as well as degree of disturbance on food security from natural disasters and political conflict. However, existing cropland extent maps over large areas (e.g., Country, region, continent, world) are derived from coarse resolution imagery (250 m to 1 km pixels) and have many limitations such as missing fragmented and\or small farms with mixed signatures from different crop types and\or farming practices that can be, confused with other land cover. As a result, the coarse resolution maps have limited useflness in areas where fields are small (<1 ha), such as in Southeast Asia. Furthermore, coarse resolution cropland maps have known uncertainties in both geo-precision of cropland location as well as accuracies of the product. To overcome these limitations, this research was conducted using multi-date, multi-year 30-m Landsat time-series data for 3 years chosen from 2013 to 2016 for all Southeast and Northeast Asian Countries (SNACs), which included 7 refined agro-ecological zones (RAEZ) and 12 countries (Indonesia, Thailand, Myanmar, Vietnam, Malaysia, Philippines, Cambodia, Japan, North Korea, Laos, South Korea, and Brunei). The 30-m (1 pixel = 0.09 ha) data from Landsat 8 Operational Land Imager (OLI) and Landsat 7 Enhanced Thematic Mapper (ETM+) were used in the study. Ten Landsat bands were used in the analysis (blue, green, red, NIR, SWIR1, SWIR2, Thermal, NDVI, NDWI, LSWI) along with additional layers of standard deviation of these 10 bands across 1 year, and global digital elevation model (GDEM)-derived slope and elevation bands. To reduce the impact of clouds, the Landsat imagery was time-composited over four time-periods (Period 1: January- April, Period 2: May-August, and Period 3: September-December) over 3-years. Period 4 was the standard deviation of all 10 bands taken over all images acquired during the 2015 calendar year. These four period composites, totaling 42 band data-cube, were generated for each of the 7 RAEZs. The reference training data (N = 7849) generated for the 7 RAEZ using sub-meter to 5-m very high spatial resolution imagery (VHRI) helped generate the knowledge-base to separate croplands from non-croplands. This knowledge-base was used to code and run a pixel-based random forest (RF) supervised machine learning algorithm on the Google Earth Engine (GEE) cloud computing environment to separate croplands from non-croplands. The resulting cropland extent products were evaluated using an independent reference validation dataset (N = 1750) in each of the 7 RAEZs as well as for the entire SNAC area. For the entire SNAC area, the overall accuracy was 88.1% with a producer’s accuracy of 81.6% (errors of omissions = 18.4%) and user’s accuracy of 76.7% (errors of commissions = 23.3%). For each of the 7 RAEZs overall accuracies varied from 83.2 to 96.4%. Cropland areas calculated for the 12 countries were compared with country areas reported by the United Nations Food and Agriculture Organization and other national cropland statistics resulting in an R 2 value of 0.93. The cropland areas of provinces were compared with the province statistics that showed an R 2 = 0.95 for South Korea and R 2 = 0.94 for Thailand. The cropland products are made available on an interactive viewer at www.croplands.org and for download at National Aeronautics and Space Administration’s (NASA) Land Processes Distributed Active Archive Center (LP DAAC): https://lpdaac.usgs.gov/node/1281 .

International Journal of Applied Earth Observation↗
USGS2023

Global review reveals how disparate study motivations, analytical designs, and focal ions limit understanding of salinization effects on freshwater animals

Global salinization of freshwaters is adversely affecting biotic communities and ecosystem processes. We reviewed six decades (1960–2020) of literature published on animal responses to increased salinities across different taxonomic and ecological contexts and identified knowledge gaps. From 585 journal articles, we characterized 5924 responses of mollusks, crustaceans, zooplankton, non-arthropod invertebrates (NAI), insects, fishes, and amphibians to salinization. Insects and fishes were the most studied taxa; Na + and Cl − were the most studied ions − . Collectively, concentrations of the ions examined typically spanned five orders of magnitude. Species' invasiveness was a key motivation for studying mollusks, crustaceans, and fishes; threats of urbanization and road salts were key motivations for studying NAI, zooplankton, and amphibians. Laboratory studies were more common than field studies for most taxa. Focal life stages in laboratory studies varied widely but juveniles and adults were represented similarly in field studies. Studies of mollusks, NAI, and crustacean focused on adults; studies of zooplankton, insects, fishes, and amphibians focused on juveniles. Organismal- and population-level responses measuring solute uptake, internal chemistry, body condition, or ion concentrations predominated laboratory studies; population- and assemblage-level responses measuring abundance, spatial distribution, or assemblage composition predominated field studies. Negative responses to salinization predominated but positive and unimodal responses were apparent across all taxa and organizational levels. Key topics for further research include a) salinity responses by more taxa, b) responses to especially toxic ions (i.e., potassium, bicarbonate, sulfate, magnesium), c) mechanisms causing positive and unimodal responses, d) traits underpinning responses, e) effects transcending organizational levels, f) ion-specific response thresholds, and g) interactions between salinity and other stressors. Our review suggests inter-taxa variation in sensitivity to salinization reflects occurrence of certain biological traits, including gill-breathing, semi-permeable skin, multiple life stages, and limited mobility. We propose a traits-based framework to predict salinization sensitivity from shared traits. This evolutionary approach could inform management aimed at preventing or reducing adverse impacts of freshwater salinization.

Science of the Total Environment↗
USGS2020

Tissue distribution and immunomodulation in channel catfish (Ictalurus punctatus) following dietary exposure to polychlorinated biphenyl Aroclors and food deprivation

Although most countries banned manufacturing of polychlorinated biphenyls (PCBs) over 40 years ago, PCBs remain a global concern for wildlife and human health due to high bioaccumulation and biopersistance. PCB uptake mechanisms have been well studied in many taxa; however, less is known about depuration rates and how post-exposure diet can influence PCB concentrations and immune response in fish and wildlife populations. In a controlled laboratory environment, we investigated the influence of subchronic dietary exposure to two PCB Aroclors and food deprivation on tissue-specific concentrations of total PCBs and PCB homologs and innate immune function in channel catfish ( Ictalurus punctatus ). Overall, we found that the concentration of total PCBs and PCB homologs measured in whole body, fillet, and liver tissues declined more slowly in food-deprived fish, with slowest depuration observed in the liver. Additionally, fish that were exposed to PCBs had lower plasma cortisol concentrations, reduced phagocytic oxidative burst activity, and lower cytotoxic activity, suggesting that PCBs can influence stress and immune responses. However, for most measures of immune function, the effects of food deprivation had a larger effect on immune response than did PCB exposure. Taken together, these results suggest that short-term dietary exposure to PCBs can increase toxicity of consumable fish tissues for several weeks, and that PCB mixtures modulate immune and stress responses via multiple pathways. These results may inform development of human consumption advisories and can help predict and understand the influence of PCBs on fish health.

International Journal of Environmental Research an↗
USGS2017

Microbially mediated barite dissolution in anoxic brines

Fluids injected into shale formations during hydraulic fracturing of black shale return with extraordinarily high total-dissolved-solids (TDS) and high concentrations of barium (Ba) and radium (Ra). Barite, BaSO 4 , has been implicated as a possible source of Ba as well as a problematic mineral scale that forms on internal well surfaces, often in close association with radiobarite, (Ba,Ra)SO 4 . The dissolution of barite by abiotic processes is well quantified. However, the identification of microbial communities in flowback and produced water necessitates the need to understand barite dissolution in the presence of bacteria. Therefore, we evaluated the rates and mechanisms of abiotic and microbially-mediated barite dissolution under anoxic and hypersaline conditions in the laboratory. Barite dissolution experiments were conducted with bacterial enrichment cultures established from produced water from Marcellus Shale wells located in northcentral Pennsylvania. These cultures were dominated by anaerobic halophilic bacteria from the genus Halanaerobium . Dissolved Ba was determined by ICP-OES and barite surfaces were investigated by SEM and AFM. Our results reveal that: 1) higher amounts of barium (up to ∼5 × ) are released from barite in the presence of Halanaerobium cultures compared to brine controls after 30 days of reaction, 2) etch pits that develop on the barite (001) surface in the presence of Halanaerobium exhibit a morphology that is distinct from those that form during control experiments without bacteria, 3) etch pits that develop in the presence of Halanaerobium exhibit a morphology that is similar to the morphology of etch pits formed in the presence of strong organic chelators, EDTA and DTPA, and 4) experiments using dialysis membranes to separate barite from bacteria suggest that direct contact between the two is not required in order to promote dissolution. These results suggest that Halanaerobium increase the rate of barite dissolution in anoxic and high ionic strength solutions. Additionally, the increase in rate occurs without direct microbe-mineral contact suggesting that metabolites secreted by the bacteria may be responsible for promotion of dissolution. The findings of this study have implications for understanding barium cycling in marine/hypersaline environments, release of barium (and associated radium) from waste solids generated from energy and mining industries, as well as potential for developing new anti-scaling chemicals.

Applied Geochemistry↗
USGS1991

Regressive coastal deposits on Quaternary continental shelves: Preservation and legacy

Regressive coastal deposits containing internal downlapping surfaces are common on continental shelves of the world. Through theoretical considerations and evaluation of examples from the literature and our own studies in California and Italy, we have examined the conditions that lead both to the formation and preservation of these deposits. Coastal downlapping deposits form by progradation of coastal and deltaic lithosomes during stable and falling sea level. in addition to the rate and direction of sea-level change, the major controls governing the development of downlapping deposits are sediment availability and shelf morphology (gradient, surface irregularity, and depth of shelf break). Continental margins receiving a large, continuous supply of sediment commonly have vertical stacks of thick, laterally extensive deposits; those fed by relatively small coastal streams may have well-developed shelf-margin deposits if accommodation space was available. in the absence of feeder streams, shelf-margin downlapping deposits can form from locally derived sediment. Regressive coastal deposits are preserved in a variety of settings, but they are least likely to be preserved on broad, low-gradient (coastal plain) shelves, where small drops in relative sea level were accompanied by large seaward shifts of the shoreline. Even on high-gradient tectonic margins, downlapping deposits commonly are not preserved on the midshelf. The process of shoreface erosion during a transgression is efficient at planing off deposits from previous depositional cycles. Where the deposits are thin, the deposit is partially or wholly reworked; where they are thick, the basal part may be preserved. Regressive deposits are most likely to be preserved along the shelf margin, where relatively thick sequences form at or below the position of the lowstand sea level. On many continental shelves, the coarse sandy texture of outer-shelf sediment largely reflects original deposition in a regressive coastal environment during a fall and lowstand of relative sea level.

California↗
USGS2009

The Eocene-Oligocene sedimentary record in the Chesapeake Bay impact structure: Implications for climate and sea-level changes on the western Atlantic margin

A multidisciplinary investigation of the Eocene-Oligocene transition in the International Continental Scientific Drilling Program (ICDP)-U.S. Geological Survey (USGS) Eyreville core from the Chesapeake Bay impact basin was conducted in order to document environmental changes and sequence stratigraphic setting. Planktonic foraminifera and calcareous nannofossil biostratigraphy indicate that the Eyreville core includes an expanded upper Eocene (Biozones E15 to E16 and NP19/20 to NP21, respectively) and a condensed Oligocene-Miocene (NP24-NN1) sedimentary sequence. The Eocene-Oligocene contact corresponds to a =3-Ma-long hiatus. Eocene- Oligocene sedimentation is dominated by great diversity and varying amounts of detrital and authigenic minerals. Four sedimentary intervals are identified by lithology and mineral content: (1) A 30-m-thick, smectite- and illite-rich interval directly overlies the Exmore Formation, suggesting long-term reworking of impact debris within the Chesapeake Bay impact structure. (2) Subsequently, an increase in kaolinite content suggests erosion from soils developed during late Eocene warm and humid climate in agreement with data derived from other Atlantic sites. However, the kaolinite increase may also be explained by change to a predominant sediment input from outside the Chesapeake Bay impact structure caused by progradation of more proximal facies belts during the highstand systems tract of the late Eocene sequence E10.Spectral analysis based on gamma-ray and magnetic susceptibility logs suggests infl uence of 1.2 Ma low-amplitude oscillation of the obliquity period during the late Eocene. (3) During the latest Eocene (Biozones NP21 and E16), several lithological contacts (clay to clayey silt) occur concomitant with a prominent change in the mineralogical composition with illite as a major component: This lithological change starts close to the Biozone NP19/20-NP21 boundary and may correspond to sequence boundary E10-E11 as observed in other northwest Atlantic margin sections. It could result from a shift to more distal depositional environments and condensed sedimentation during maximum fl ooding, rather than refl ecting a climatic change in the hinterland. The distinct 1% increase of the oxygen isotopes may correspond to the short-term latest Eocene "precursor isotope event." (4) The abrupt increase of sediment grainsize, carbonate content, and abundance of authigenic minerals (glauconite) across the major unconformity that separates Eocene from Oligocene sediments in the Eyreville core refl ects deposition in shallower settings associated with erosion, winnowing, and reworking. Sediments within the central crater were affected by the rapid eustatic sea-level changes associated with the greenhouse-icehouse transition, as well as by an abrupt major uplift event and possibly enhanced current activity on the northwestern Atlantic margin. ?? 2009 The Geological Society of America.

Chesapeake Bay↗
USGS1993

Geologic and geomorphic controls of coal development in some Tertiary Rocky Mountain basins, USA

Previous investigations have not well defined the controls on the development of minable coals in fluvial environments. This study was undertaken to provide a clearer understanding of these controls, particularly in of the lower Tertiary coal-bearing deposits of the Raton and Powder River basins in the Rocky Mountain region of the United States. In this region, large amounts of coals accumulated in swamps formed in the flow-through fluvial systems that infilled these intermontane basins. Extrabasinal and intrabasinal tectonism partly controlled the stratigraphic and facies distributions of minable coal deposits. The regional accumulation of coals was favored by the rapid basin subsidence coupled with minimal uplift of the source area. During these events, coals developed in swamps associated with anastomosed and meandering fluvial systems and alluvial fans. The extensive and high rate of sediment input from these fluvial systems promoted the formation of ombrotrophic, raised swamps, which produced low ash and anomalously thick coals. The petrology and palynology of these coals, and the paleobotany of the associated sediments, suggest that ombrotrophic, raised swamps were common in the Powder River Basin, where the climate during the early Tertiary was paratropical. The paleoecology of these swamps is identical to that of the modern ombrotrophic, raised swamps of the Baram and Mahakam Rivers of Borneo.

International Journal of Coal Geology↗
USGS2007

Chemical contaminants, health indicators, and reproductive biomarker responses in fish from the Colorado River and its tributaries

Common carp (Cyprinus carpio), black bass (Micropterus spp.), and channel catfish (Ictalurus punctatus) were collected from 14 sites in the Colorado River Basin (CRB) to document spatial trends in accumulative contaminants, health indicators, and reproductive biomarkers. Organochlorine residues, 2,3,7,8-tetrachlorodibenzo-p-dioxin-like activity (TCDD-EQ), and elemental contaminants were measured in composite samples of whole fish, grouped by species and gender, from each site. Selenium (Se) and mercury (Hg) concentrations in fish were elevated throughout the CRB, and pesticide concentrations were greatest in fish from agricultural areas in the Lower Colorado River and Gila River. Selenium concentrations exceeded toxicity thresholds for fish (> 1.0????g/g ww) at all CRB sites except the Gila River at Hayden, Arizona. Mercury concentrations were elevated (> 0.1????g/g ww) in fish from the Yampa River at Lay, Colorado; the Green River at Ouray National Wildlife Refuge (NWR), Utah and San Rafael, Utah; the San Juan River at Hogback Diversion, New Mexico; and the Colorado River at Gold Bar Canyon, Utah, Needles, California, and Imperial Dam, Arizona. Concentrations of p,p???-DDE were relatively high in fish from the Gila River at Arlington, Arizona (> 1.0????g/g ww) and Phoenix, Arizona (> 0.5????g/g ww). Concentrations of other formerly used pesticides including toxaphene, total chlordanes, and dieldrin were also greatest at these two sites but did not exceed toxicity thresholds. Currently used pesticides such as Dacthal, endosulfan, ??-HCH, and methoxychlor were also greatest in fish from the Gila River downstream of Phoenix. Total polychlorinated biphenyls (PCBs; > 0.11????g/g ww) and TCDD-EQs (> 5??pg/g ww) exceeded wildlife guidelines in fish from the Gila River at Phoenix. Hepatic ethoxyresorufin O-deethylase (EROD) activity was also relatively high in carp from the Gila River at Phoenix and in bass from the Green River at Ouray NWR. Fish from some sites showed evidence of contaminant exposure as indicated by fish health indicators and reproductive biomarker results. Multiple health indicators including altered body and organ weights and high health assessment index scores may be associated with elevated Se concentrations in fish from the Colorado River at Loma, Colorado and Needles. Although grossly visible external or internal lesions were found on most fish from some sites, histopathological analysis determined many of these to be inflammatory responses associated with parasites. Edema, exophthalmos, and cataracts were noted in fish from sites with elevated Se concentrations. Intersex fish were found at seven of 14 sites and included smallmouth bass (M. dolomieu), largemouth bass (M. salmoides), catfish, and carp and may indicate exposure to endocrine disrupting compounds. A high proportion of smallmouth bass from the Yampa River at Lay (70%) was intersex but the cause of this condition is unknown. Male carp, bass, and catfish with low concentrations of vitellogenin were common in the CRB. Comparatively high vitellogenin concentrations (> 0.2??mg/mL) were measured in male bass from the Green River at Ouray NWR and the Colorado River at Imperial Dam and indicate exposure to estrogenic or anti-androgenic chemicals. Anomalous reproductive biomarkers including low GSI and gonadal abnormalities (calcifications, edema, and parasites) observed in fish downstream of Phoenix are likely related to the poor water-quality of the Gila River in this area.

Colorado River Basin↗
USGS2008

Determination of human-health pharmaceuticals in filtered water by chemically modified styrene-divinylbenzene resin-based solid-phase extraction and high-performance liquid chromatography/Mass Spectrometry

In 1999, the Methods Research and Development Program of the U.S. Geological Survey National Water Quality Laboratory began the process of developing a method designed to identify and quantify human-health pharmaceuticals in four filtered water-sample types: reagent water, ground water, surface water minimally affected by human contributions, and surface water that contains a substantial fraction of treated wastewater. Compounds derived from human pharmaceutical and personal-care product use, which enter the environment through wastewater discharge, are a newly emerging area of concern; this method was intended to fulfill the need for a highly sensitive and highly selective means to identify and quantify 14 commonly used human pharmaceuticals in filtered-water samples. The concentrations of 12 pharmaceuticals are reported without qualification; the concentrations of two pharmaceuticals are reported as estimates because long-term reagent-spike sample recoveries fall below acceptance criteria for reporting concentrations without qualification. The method uses a chemically modified styrene-divinylbenzene resin-based solid-phase extraction (SPE) cartridge for analyte isolation and concentration. For analyte detection and quantitation, an instrumental method was developed that used a high-performance liquid chromatography/mass spectrometry (HPLC/MS) system to separate the pharmaceuticals of interest from each other and coextracted material. Immediately following separation, the pharmaceuticals are ionized by electrospray ionization operated in the positive mode, and the positive ions produced are detected, identified, and quantified using a quadrupole mass spectrometer. In this method, 1-liter water samples are first filtered, either in the field or in the laboratory, using a 0.7-micrometer (μm) nominal pore size glass-fiber filter to remove suspended solids. The filtered samples then are passed through cleaned and conditioned SPE cartridges at a rate of about 15 milliliters per minute. Excess water is eliminated from the cartridge sorbent bed by passing air through the cartridges, and the analytes retained on the SPE bed are eluted from the cartridge sequentially, first with methanol, followed by acidified methanol, and combined in collection tubes. This sample extract then is reduced from about 10 milliliters (mL) to about 0.1 mL (or 100 microliters) under a stream of purified nitrogen gas with the collection tubes in a heated (40°C) water bath. The reduced extracts then are fortified with an internal standard solution (when using internal standard quantitation), brought to a final volume of 1 mL with an aqueous ammonium formate buffer solution, and filtered through a 0.2-μm Teflon syringe filter as they are transferred into vials for instrumental analysis. Instrumental analysis by the HPLC/MS procedure permits determination of individual pharmaceutical concentrations from 0.005 to 1.0 microgram per liter, based on the lowest and the highest calibration standards routinely used. The reporting levels for this method are compound dependent, and have been experimentally determined based on the precision of quantitation of compounds from eight fortified organic-free water samples in single-operator experiments. The method detection limits and interim reporting levels for the compounds determined by this method were calculated from recoveries of the pharmaceuticals from reagent-water samples amended at 0.05 microgram per liter, and ranged between 0.0069 and 0.0142 microgram per liter, and 0.015 and 0.10 microgram per liter, respectively. Concentrations for 12 compounds are reported without qualification, and for two compounds are reported as qualified estimates. After initial development, the method was applied to more than 1,800 surface-, ground-, and wastewater samples from 2002 to 2005 and documented in a number of published studies. This research application of the method provided the opportunity to collect a large data set of ambient environmental concentrations and also permitted the collection of an extensive set of reagent blanks and spike quality-control (QC) samples. This multiple-year set of QC samples enabled further evaluation of method performance under multiple operator and multiple instrument conditions typical of routine laboratory operation. These results are an important part of the entire data set contained in this report because they document method performance over an extended time. Because sample matrix can substantially affect method performance, inclusion of environmental matrix-spike samples is required as a routine component of study plan quality control. Method performance has been measured by long-term tracking of observed recoveries from fortified organic-free water samples processed with environmental samples (laboratory reagent spikes), as well as by observed recoveries from multiple fortified environmental water samples. The fortified environmental samples included surface water, wastewater effluent-dominated surface water, and ground water, fortified at two environmentally relevant concentrations and corrected for ambient environmental concentrations. Because the responses of individual pharmaceuticals vary as a function of proton affinity, the ionization efficiency, and thus relative response, of each pharmaceutical, the quality-control surrogate compounds, and the quantitation internal standard can be suppressed or enhanced by the presence of the sample matrix. As a result, several quality-control sample types are required to properly interpret the ambient environmental concentrations of pharmaceuticals in aqueous samples. The quality-control sample types and results include laboratory reagent spikes and laboratory reagent blanks to provide insight into the performance of the method in the absence of a sample matrix, and matrix-spike recovery samples and replicate environmental samples, collected from representative sample matrix types within the aquatic system under study.

Techniques and Methods↗
USGS2018

Juvenile coho salmon growth and health in streams across an urbanization gradient

Expanding human population and urbanization alters freshwater systems through structural changes to habitat, temperature effects from increased runoff and reduced canopy cover, altered flows, and increased toxicants. Current stream assessments stop short of measuring health or condition of species utilizing these freshwater habitats and fail to link specific stressors mechanistically to the health of organisms in the stream. Juvenile fish growth integrates both external and internal conditions providing a useful indicator of habitat quality and ecosystem health. Thus, there is a need to account for ecological and environmental influences on fish growth accurately. Bioenergetics models can simulate changes in growth and consumption in response to environmental conditions and food availability to account for interactions between an organism's environmental experience and utilization of available resources. The bioenergetics approach accounts for how thermal regime, food supply, and food quality affect fish growth. This study used a bioenergetics modeling approach to evaluate the environmental factors influencing juvenile coho salmon growth among ten Pacific Northwest streams spanning an urban gradient. Urban streams tended to be warmer, have earlier emergence dates and stronger early season growth. However, fish in urban streams experienced increased stress through lower growth efficiencies, especially later in the summer as temperatures warmed, with as much as a 16.6% reduction when compared to fish from other streams. Bioenergetics modeling successfully characterized salmonid growth in small perennial streams as part of a more extensive monitoring program and provides a powerful assessment tool for characterizing mixed life-stage specific responses in urban streams.

Science of the Total Environment↗
USGS2015

Transplantation of storm-generated coral fragments to enhance Caribbean coral reefs: A successful method but not a solution

In response to dramatic losses of reef-building corals and ongoing lack of recovery, a small-scale coral transplant project was initiated in the Caribbean (U.S. Virgin Islands) in 1999 and was followed for 12 years. The primary objectives were to (1) identify a source of coral colonies for transplantation that would not result in damage to reefs, (2) test the feasibility of transplanting storm-generated coral fragments, and (3) develop a simple, inexpensive method for transplanting fragments that could be conducted by the local community. The ultimate goal was to enhance abundance of threatened reef-building species on local reefs. Storm-produced coral fragments of two threatened reef-building species [ Acropora palmata and A. cervicornis (Acroporidae)] and another fast-growing species [ Porites porites (Poritidae)] were collected from environments hostile to coral fragment survival and transplanted to degraded reefs. Inert nylon cable ties were used to attach transplanted coral fragments to dead coral substrate. Survival of 75 reference colonies and 60 transplants was assessed over 12 years. Only 9% of colonies were alive after 12 years: no A. cervicornis ; 3% of A. palmata transplants and 18% of reference colonies; and 13% of P. porites transplants and 7% of reference colonies. Mortality rates for all species were high and were similar for transplant and reference colonies. Physical dislodgement resulted in the loss of 56% of colonies, whereas 35% died in place. Only A. palmata showed a difference between transplant and reference colony survival and that was in the first year only. Location was a factor in survival only for A. palmata reference colonies and after year 10. Even though the tested methods and concepts were proven effective in the field over the 12-year study, they do not present a solution. No coral conservation strategy will be effective until underlying intrinsic and/or extrinsic factors driving high mortality rates are understood and mitigated or eliminated. Rev. Biol. Trop. 60 (Suppl. 1): 59-70. Epub 2012 March 01.

Revista de Biología Tropical: International Journa↗
USGS2022

Plague and trace metals in natural systems

All pathogenic organisms are exposed to abiotic influences such as the microclimates and chemical constituents of their environments. Even those pathogens that exist primarily within their hosts or vectors can be influenced directly or indirectly. Yersinia pestis , the flea-borne bacterium causing plague, is influenced by climate and its survival in soil suggests a potentially strong influence of soil chemistry. We summarize a series of controlled studies conducted over four decades in Russia by Dr. Evgeny Rotshild and his colleagues that investigated correlations between trace metals in soils, plants, and insects, and the detection of plague in free-ranging small mammals. Trace metal concentrations in plots where plague was detected were up to 20-fold higher or lower compared to associated control plots, and these differences were >2-fold in 22 of 38 comparisons. The results were statistically supported in eight studies involving seven host species in three families and two orders of small mammals. Plague tended to be positively associated with manganese and cobalt, and the plague association was negative for copper, zinc, and molybdenum. In additional studies, these investigators detected similar connections between pasturellosis and concentrations of some chemical elements. A One Health narrative should recognize that the chemistry of soil and water may facilitate or impede epidemics in humans and epizootics in non-human animals.

International Journal of Environmental Research an↗
USGS1989

Multiple hydrothermal and metamorphic events in the Kidd Creek volcanogenic massive sulphide deposit, Timmins, Ontario: evidence from tourmalines and chlorites

Tourmaline and chlorite are the principal ferromagnesian silicate minerals in the Kidd Creek massive sulphide deposit. Tourmaline is most common in sphalerite-rich peripheral margins of the chalcopyrite stringer zone. Within the north orebody, samples typically contain <1% tourmaline, but small areas (hand-specimen scale) may have 10–20%. Chlorite is more widely distributed and in places constitutes 30–50% of rock volumes. Associated assemblages may include quartz, sulphides (principally chalcopyrite, sphalerite, and (or) pyrite), carbonate, albite, sericite, and rare fluorite, allanite, or zoisite(?).The tourmalines and chlorites record a series of multiple hydrothermal and metamorphic events. Paragenetic studies suggest that tourmaline was deposited during several discrete stages of mineralization, as evidenced by brecciation and cross-cutting relationships. Most of the tourmalines have two concentric growth zones defined by different colours (green, brown, blue, yellow). Some tourmalines also display pale discordant rims that cross-cut and embay the inner growth zones and polycrystalline, multiple-extinction domains. Late sulphide veinlets (chalcopyrite, pyrrhotite) transect the inner growth zones and pale discordant rims of many crystals. The concentric growth zones are interpreted as primary features developed by the main ore-forming hydrothermal system, whereas the discordant rims, polycrystalline domains, and cross-cutting sulphide veinlets reflect post-ore metamorphic processes.Detailed electron microprobe analyses of tourmalines show a wide compositional range, from Fe-rich dravite nearly to end-member schorl, with Fe/(Fe + Mg) ratios varying from 0.33 to 0.92; only minor amounts of Ca are present, yielding uniformly high Na/(Na + Ca) ratios of 0.84–0.99. Two sets of chemical zoning trends are identified in the tourmalines, involving systematic changes in Fe/(Fe + Mg), Na/(Na + Ca), Al, and Ti that are believed to reflect internal coupled substitutions (e.g.,  + Ti = Na + Al) and local mineral equilibria (e.g., tourmaline–chlorite). Analyses of the pale discordant reaction rims show consistent depletion of Fe, Ca, and Ti, presumably by fluid–solid reactions during post-ore metamorphism.Chlorites also show an extensive range in composition, from ripidolite nearly to end-member daphnite, with Fe/(Fe + Mg) ratios of 0.43–0.98 and Si cation values of 5.00–5.39. Chlorites from the fringes of the footwall stringer zone have narrow compositional ranges, whereas chlorites near footwall rhyolite sills in the core of the stringer zone display major variations in Fe/(Fe + Mg) ratios, including one sample with a range of 0.68–0.95. The former group of chlorites has Fe/(Fe + Mg) ratios that correlate well with those of coexisting tourmalines (exclusive of late reaction rims). Data for the latter group, in contrast, fall off equilibrium K D curves, indicating that the tourmalines and chlorites within these samples are not in chemical equilibrium. The chlorites are believed to have been altered (overprinted) by Fe-rich hydrothermal fluids apparently generated during intrusion of the rhyolite sills. The tourmalines, however, are unaffected and retain primary chemical signatures.Variations in mineral proportions and mineral chemistry within the deposit mainly depend on fluctuations in temperature, pH, water/rock ratios, and amounts of entrained seawater. The major proposed control is mixing between high-temperature, Fe-rich end-member hydrothermal fluids and cold, Mg-rich entrained seawater. Fe/(Fe + Mg) variations in footwall tourmalines (and equilibrium chlorites) are believed to largely reflect the progressive infiltration of Mg-rich seawater into the margins and top of the hydrothermal system. The more Fe-rich compositions of Kidd Creek tourmalines relative to those from sediment-hosted massive sulphide deposits (e.g., Sullivan, British Columbia) may be related to the preferential generation of end-member hydrothermal fluids in proximal volcanic environments like that at Kidd Creek.

Ontario↗
USGS2022

Bathymetry retrieval from CubeSat image sequences with short time lags

The rapid expansion of CubeSat constellations could revolutionize the way inland and nearshore coastal waters are monitored from space. This potential stems from the ability of CubeSats to provide daily imagery with global coverage at meter-scale spatial resolution. In this study, we explore the unique opportunity to improve the retrieval of bathymetry offered by CubeSats, specifically those of the PlanetScope constellation. The orbital design of the PlanetScope constellation enables the acquisition of image sequences with short time lags (from seconds to hours). This characteristic allows multiple images to be captured during a short period of steady bathymetric conditions, especially in dynamic environments like rivers. We hypothesize that taking the ensemble mean of a CubeSat image sequence can enhance bathymetry retrieval compared to standard single-image analysis. Along with the existing optimal band ratio analysis (OBRA) algorithm, we also use a new neural network-based depth retrieval (NNDR) technique to infer bathymetry from both individual and time-averaged images. The two methodologies are evaluated using field data from five different river reaches with depths up to 15 m and both top-of-atmosphere (TOA) radiance and bottom-of-atmosphere (BOA) surface reflectance PlanetScope data products. Despite low spectral resolution and concerns about the radiometric quality of CubeSat imagery, accuracy assessment based on in-situ comparisons indicates the potential (0.52 < R 2 < 0.7 for the NNDR method) of PlanetScope imagery to retrieve depths up to ∼ 10 m in clear water conditions. The proposed image averaging consistently improves bathymetry retrieval over single image analysis. The NNDR technique was found to outperform OBRA, illustrating the importance of leveraging all spectral bands through machine learning approaches. TOA data provided more robust bathymetry results than BOA data for the OBRA technique, but the NNDR technique was minimally impacted by the type of data product.

International Journal of Applied Earth Observation↗