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At least 433 records · Page 24Linked to original sources

USGS2003

Comparison of methods to detect Pasteurella multocida in carrier waterfowl

We conducted laboratory challenge trials using mallard ducks (Anas platyrhynchos) to compare methods for detecting carriers of Pasteurella multocida, the bacterium that causes avian cholera, in wild birds. Birds that survived the initial infection were euthanized at 2-4 wk intervals up to 14 wk post challenge. Isolates of P. multocida were obtained at necropsy from 23% of the birds that survived initial infection. We found that swab samples (oral, cloacal, nasal, eye, and leg joint) were most effective for detecting carrier birds up to 14 wk post infection. No detectable differences in isolation were observed for samples stored in either 10% dimethysulfoxide or brain heart infusion broth. The frequency of detecting carriers in our challenge trials appeared to be related to mortality rates observed during the trial, but was not related to a number of other factors including time after challenge, time delays in collecting tissues postmortem, and route of infection. In our trials, there was little association between antibody levels and carrier status. We concluded that swabs samples collected from recently dead birds, stored in liquid nitrogen, and processed using selective broth provide a feasible field method for detecting P. multocida carriers in wild waterfowl.

California, Nebraska↗

USGS2010

Efficacy of commercial canarypox vaccine for protecting Hawai'i 'Amakihi from field isolates of Avipoxvirus

At least three variants of avian pox virus are present in Hawai‘i - Fowlpox from domestic poultry and a group of genetically distinct viruses that cluster within two clades (Pox Variant 1 and Pox Variant 2) that are most similar to Canarypox based on DNA sequence of the virus 4b core protein gene. We tested whether Hawai‘i ‘Amakihi can be protected from wild virus isolates with an attenuated live Canarypox vaccine that is closely related to isolates that cluster within clade 1 (Pox Variant 1) based on sequence of the attenuated Canarypox virus 4b core protein. Thirty-one (31) Hawai`i ‘Amakihi ( Hemignathus virens ) with no prior physical evidence of pox infection were collected on Mauna Kea from xeric, high elevation habitats with low pox prevalence and randomly divided into two groups. One group of 16 was vaccinated with Poximmune C® while the other group received a sham vaccination with virus diluent. Four of 15 (27%) vaccinated birds developed potentially life-threatening disseminated lesions or lesions of unusually long duration, while one bird never developed a vaccine-associated lesion or "take". After vaccine-associated lesions healed, vaccinated birds were randomly divided into three groups of five and challenged with either a wild isolate of Fowlpox, a Hawai`i `Amakihi isolate of a Canarypox-like virus from clade 1 (Pox Variant 1) or a Hawai`i `Amakihi isolate of a Canarypox-like virus from clade 2 (Pox Variant 2). Similarly, three random groups of five unvaccinated ‘Amakihi were challenged with the same virus isolates. Vaccinated and unvaccinated ‘Amakihi challenged with Fowlpox had transient infections with no clinical signs of infection. Mortality in vaccinated ‘Amakihi that were challenged with Pox Variant 1 and Pox Variant 2 ranged from 0% (0/5) for Pox Variant 1 to 60% (3/5) for Pox Variant 2. Mortality in unvaccinated ‘Amakihi ranged from 40% (2/5) for Pox Variant 1 to 100% (5/5) for Pox Variant 2. While the vaccine provided some protection against Pox Variant 1, serious side effects and low efficacy against Pox Variant 2 make it risky to use in captive or wild honeycreepers.

Hawai'i↗

USGS2011

Clinical pathology results from cranes with experimental West Nile Virus infection

Sandhill cranes ( Grus canadensis ) were vaccinated for and then challenged with West Nile virus. Resulting titers demonstrated protection in the vaccinated-challenged cranes as compared to the unvaccinated-challenged cranes. Clinical pathology results showed challenged cranes, whether vaccinated or not, had a decrease in their hematocrits and an elevation of 2.5-fold in their white blood cell counts as compared to unchallenged control sandhill cranes. No differences were apparent in the differential counts of heterophils and lymphocytes.

Proceedings of the Association of Avian Veterinari↗

USGS2012

Exploring relationships among land ownership, agricultural land use, and native fish species richness in the Upper Mississippi River Basin

The general effects of agriculture on in-stream fish communities in the Upper Midwestern United States have been well studied for nearly three decades (Karr et al. 1985; Nerbonne and Vondracek 1991; Zimmerman et al. 2001; Goldstein and Meador 2005). Specific impacts include: lowered water levels, sediment loading and nutrient enrichment, loss of riparian habitat, changes to channel morphometry and physical habitat, and changes to the forage base. As part of the National Fish Habitat Action Plan (NFHAP), an initiative to protect, restore, and enhance the nation's fish and aquatic communities, the Fishers and Farmers Partnership specifically focuses on working with agricultural producers to help protect and restore aquatic resources in the Upper Mississippi River Basin (UMRB) (Fig. 1). Successful protection and/or restoration will require the partnership and local conservation agencies to effectively communicate and work with local landowners. However, roughly 43% of the agricultural lands in the UMRB are not operated by those who own the land (National Agricultural Statistics Service 2009) and this is expected to increase as heirs of farm estates now reside greater distances from their home farms than ever before (Arbuckle 2010). It has long been presumed that changes in land ownership trends, toward more absentee landowners, would have important consequences for soil erosion and other conservation practices, as larger, more corporate agriculture, is thought to maximize farm income at the expense of environmental quality (Lee 1980). Absentee landowners may be less likely to take advantage of conservation programs. For example, land operated by renters lags enrollment in the Conservation Reserve (CRP) and Wetland Reserve (WRP) programs by 64% nation-wide (Petrzelka et al. 2009). Also, it has been found that the more detached an absentee landowner becomes from their land, both geographically and culturally, their commitment to land stewardship decreases (Arbuckle 2010). The Fishers and Farmers Partnership recognizes the challenge agricultural producers face in maintaining food and fiber production for a growing world population while also trying to improve environmental quality and fish habitat. This challenge is likely exacerbated when the landowners are absentee. Thus, reaching non-owner-operated farmers and convincing them to help protect and/or restore aquatic resources may be critical to the success of the Fishers and Farmers Partnership. In this study, we explored relationships among agricultural land use, land ownership, and native fish biodiversity in the UMRB as a first step toward helping the Fishers and Farmers Partnership identify specific locations in the UMRB that may pose conservation challenges. For example, places that have experienced a loss of native fish species richness relative to historical conditions and also have high proportions of absentee landowners may provide restoration challenges. We were also interested in identifying areas that have retained high levels of species richness and are owner-operated. These areas present good opportunities to work with local landowners to protect aquatic resources. To identify such areas, we addressed two primary questions: 1) Is there a relationship between the type of agricultural land use (i.e. cropland vs pastureland) and the % of land rented or leased within the UMRB? and 2) How does the type of agricultural production and whether land is rented or leased relate to the maintenance of historical levels of native fish species richness? We predicted that areas with large amounts of land devoted to crop production will have experienced the greatest losses of native fish species richness. However, our hypothesis is that watersheds with large amounts of land rented or leased will have experienced even greater declines in native fish species richness than would be predicted from the amount of cultivated cropland alone. By testing these hypotheses, we intended to identify watersheds that would be strong candidates for protection, restoration, and enhancement of fish species richness by accounting for land use and ownership characteristics.

Illinois, Indiana, Iowa, Michigan, Minnesota, Miss↗

USGS2010

Global change and water resources in the next 100 years

We are in the midst of a continental-scale, multi-year experiment in the United States, in which we have not defined our testable hypotheses or set the duration and scope of the experiment, which poses major water-resources challenges for the 21st century. What are we doing? We are expanding population at three times the national growth rate in our most water-scarce region, the southwestern United States, where water stress is already great and modeling predicts decreased streamflow by the middle of this century. We are expanding irrigated agriculture from the west into the east, particularly to the southeastern states, where increased competition for ground and surface water has urban, agricultural, and environmental interests at odds, and increasingly, in court. We are expanding our consumption of pharmaceutical and personal care products to historic high levels and disposing them in surface and groundwater, through sewage treatment plants and individual septic systems. These substances are now detectable at very low concentrations and we have documented significant effects on aquatic species, particularly on fish reproduction function. We don’t yet know what effects on human health may emerge, nor do we know if we need to make large investments in water treatment systems, which were not designed to remove these substances. These are a few examples of our national-scale experiment. In addition to these water resources challenges, over which we have some control, climate change models indicate that precipitation and streamflow patterns will change in coming decades, with western mid-latitude North America generally drier. We have already documented trends in more rain and less snow in western mountains. This has large implications for water supply and storage, and groundwater recharge. We have documented earlier snowmelt peak spring runoff in northeastern and northwestern States, and western montane regions. Peak runoff is now about two weeks earlier than it was in the first half of the 20th century. Decreased summer runoff affects water supply for agriculture, domestic water supply, cooling needs for thermoelectric power generation, and ecosystem needs. In addition to the reduced volume of streamflow during warm summer months, less water results in elevated stream temperature, which also has significant effects on cooling of power generating facilities and on aquatic ecosystem needs. We are now required to include fish and other aquatic species in negotiation over how much water to leave in the river, rather than, as in the past, how much water we could remove from a river. Additionally, we must pay attention to the quality of that water, including its temperature. This is driven in the US by the Endangered Species Act and the Clean Water Act. Furthermore, we must now better understand and manage the whole hydrograph and the influence of hydrologic variability on aquatic ecosystems. Man has trimmed the tails off the probability distribution of flows. We need to understand how to put the tails back on but can’t do that without improved understanding of aquatic ecosystems. Sea level rise presents challenges for fresh water extraction from coastal aquifers as they are compromised by increased saline intrusion. A related problem faces users of ‘run-of-the-river’ water-supply intakes that are threatened by a salt front that migrates further upstream because of higher sea level. We face significant challenges with water infrastructure. The U.S. has among the highest quality drinking water in the world piped to our homes. However, our water and sewage treatment plants and water and sewer pipelines have not had adequate maintenance or investment for decades. The US Environmental Protection Agency estimates that there are up to 3.5M illnesses per year from recreational contact with sewage from sanitary sewage overflows. Infrastructure investment needs have been put at 5 trillion nationally. Global change and water resources c

Conference Paper↗

USGS2010

Efficacy of a commercial canarypox vaccine for protecting Hawai'i 'Amakihi from field isolates of avipoxvirus

At least three variants of avian pox virus are present in Hawai’i - Fowlpox from domestic poultry and a group of genetically distinct viruses that cluster within two clades (Pox Variant 1 and Pox Variant 2) that are most similar to Canarypox based on DNA sequence of the virus 4b core protein gene. We tested whether Hawai’i ‘Amakihi can be protected from wild virus isolates with an attenuated live Canarypox vaccine that is closely related to isolates that cluster within clade 1 (Pox Variant 1) based on sequence of the attenuated Canarypox virus 4b core protein. Thirty-one (31) Hawai`i ‘Amakihi ( Hemignathus virens ) with no prior physical evidence of pox infection were collected on Mauna Kea from xeric, high elevation habitats with low pox prevalence and randomly divided into two groups. One group of 16 was vaccinated with Poximmune C® while the other group received a sham vaccination with virus diluent. Four of 15 (27%) vaccinated birds developed potentially life-threatening disseminated lesions or lesions of unusually long duration, while one bird never developed a vaccine-associated lesion or “take”. After vaccine-associated lesions healed, vaccinated birds were randomly divided into three groups of five and challenged with either a wild isolate of Fowlpox, a Hawai`i `Amakihi isolate of a Canarypox-like virus from clade 1 (Pox Variant 1) or a Hawai`i `Amakihi isolate of a Canarypox-like virus from clade 2 (Pox Variant 2). Similarly, three random groups of five unvaccinated ‘Amakihi were challenged with the same virus isolates. Vaccinated and unvaccinated ‘Amakihi challenged with Fowlpox had transient infections with no clinical signs of infection. Mortality in vaccinated ‘Amakihi that were challenged with Pox Variant 1 and Pox Variant 2 ranged from 0% (0/5) for Pox Variant 1 to 60% (3/5) for Pox Variant 2. Mortality in unvaccinated ‘Amakihi ranged from 40% (2/5) for Pox Variant 1 to 100% (5/5) for Pox Variant 2. While the vaccine provided some protection against Pox Variant 1, serious side effects and low efficacy against Pox Variant 2 make it risky to use in captive or wild honeycreepers.

Hawaii↗

USGS2016

Shifting currents: Progress, setbacks, and shifts in policy and practice

The Wisconsin Academy’s initial Waters of Wisconsin project (WOW I) facilitated a statewide conversation between 2000 and 2003 around one main question: How can we ensure healthy aquatic ecosystems and clean, abundant water supplies for tomorrow’s Wisconsin? Robust participation in this conversation underscored the important role citizens have in the stewardship of our waters, and we found enthusiastic support for farsighted policies—based on sound science—to manage our water legacy. Overall, we found that Wisconsinites cherish water and see our waters as essential to our way of life in Wisconsin. Nationally, our state ranks 25th in land area but has the fourth-highest area covered by water. Wisconsin is 20th in population but is second only to Florida in the number of fishing licenses sold each year. Clean water supports billions of dollars’ worth of economic activity through tourism, agriculture, and industry. From the Northwoods cabin to the Port of Milwaukee to the Wisconsin Dells, water shapes our state’s identity. Our tradition of safeguarding Wisconsin’s waters is grounded in values such as responsibility to family and future generations, respect for land and wildlife, protecting public health and safety, and caring for water as a common good, as articulated in the state’s Public Trust Doctrine (see page 9). These deeply held values have also shaped a conservation ethic, and its legacy has served many generations who depend upon and enjoy the waters of the state. Through WOW I, we identified the need to overcome the institutional and disciplinary separation of science, policy, and management protocols through a more integrated approach to water management. WOW also affirmed that the Wisconsin Department of Natural Resources (DNR) and other public agencies play a critical role in sound scientific application, citizen participation, and the practical implementation of policy while balancing public and private interests toward the goal of a clean water future. More than a decade has passed since our first statewide WOW conversation and the report that captured recommendations from its participants: Waters of Wisconsin: The Future of Our Aquatic Ecosystems and Resources. Drawing from a diverse and growing set of stakeholders from across the state, the Wisconsin Academy initiated a new conversation in 2012 (known as WOW II) to assess progress in regard to our 2003 recommendations. We also sought to review the status of waters in Wisconsin today. The result of this renewed conversation is Shifting Currents: Progress, Setbacks, and Shifts in Policy and Practice. The new report assesses progress in brief, and explores in greater depth the continuing and emerging challenges to water quality, supply, and aquatic ecosystems in Wisconsin. In this report, we first review the context and frameworks for public decision-making about water and then examine some of the root causes—or “drivers”—and ecological stressors that underlie many of the symptoms we see in the form of pollution or ecosystem degradation in Wisconsin. This is followed by a summary of current water issues, many of which had been identified in the 2003 report and remain relevant today. We examine progress since 2003 but also setbacks, and discuss issues that we are likely to continue to face in the coming decades, including controlling agricultural runoff, mitigating climate change and grappling with its effects on the state’s waters, protecting groundwater from bacterial contamination and other pollutants, and preventing groundwater depletion. We also attempt to anticipate issues on the horizon. We offer a deeper look at some particular challenges, such as phosphorus pollution and groundwater contamination. We then consider the current decision-making framework and how it is shaping our capacity to respond to water challenges in Wisconsin. Finally, we offer recommendations and identify opportunities to safeguard Wisconsin’s waters in the decades ahead. From its inception, the Wisconsin Academy’s Waters of Wisconsin Initiative has brought together a diverse community of experts from across the state and from varied fields and areas of interest, to address challenges and seize opportunities related to our precious waters. We have done so as a matter of both principle and practical reality: the state of our waters reflects the ways we interact not only with them, but also with one another and our institutions. The WOW Initiative has aimed to provide guidance for Wisconsin citizens in sustaining the health of our aquatic ecosystems and the resilience of our water supplies over the long term.

Report↗

USGS2019

Supporting the development and use of native plant materials for restoration on the Colorado Plateau (Fiscal Year 18 Report)

Introduction A primary focus of the Colorado Plateau Native Plant Program (CPNPP) is to identify and develop appropriate native plant materials (NPMs) for current and future restoration projects. Multiple efforts have characterized the myriad challenges inherent in providing appropriate seed resources to enable effective, widespread restoration and identified a broad suite of research activities to provide the information necessary to overcome those challenges (e.g., Plant Conservation Alliance 2015; Breed et al. 2018). Many of the most complex information needs relate to identifying the appropriate plant species and populations that can successfully establish in dryland environments, like the Colorado Plateau, where low and highly variable precipitation is standard. Providing this information requires synergistic research efforts in which results from earlier investigations inform the design of subsequent investigations. Southwest Biological Science Center’s (SBSC’s) research activities in FY18 followed the FY18 Statement of Work (“Research supporting native plant materials development for the Colorado Plateau Native Plant Program, FY18”) to support a research framework that is continually adapting based on the needs of the restoration community and results from previous investigations; the long-term research framework is now outlined in the 2019-2023 5-Year Research Strategy (discussed below; hereafter referred to as the 5-Year Research Strategy). This research framework provides support for the National Seed Strategy for Rehabilitation and Restoration (Plant Conservation Alliance, 2015), Department of Interior Secretarial Order #3347 (Conservation Stewardship and Outdoor Recreation), and Bureau of Land Management Leadership Priority #1 (Create a conservation stewardship legacy second only to Teddy Roosevelt). The overall focus of activities in FY18 centered on landscape genetics and planning for common garden and other research projects. These activities were supported by two biological technicians that were hired and trained by Dr. Rob Massatti and Dr. Daniel Winkler. Many of the field-related activities, including plant trait measurement and seed/tissue collecting, were assigned to these technicians, which freed Dr. Massatti to work on other research objectives, including the time-consuming activities of processing and analyzing genetic data. A major challenge to field work in FY18 was the drought conditions that pervaded the Plateau during the spring field season. Due to low winter and spring precipitation, many plant communities did not green up in the spring, which prevented the biological technicians from collecting plant trait data, tissues samples, and seeds in many areas. To cope with the dry conditions, the technicians searched sites across a wider range of environmental space and considered a broader suite of species from which to collect data (i.e., species that may be included in research projects in future years). Monsoonal precipitation starting in July supported a late summer/fall field season and allowed the technicians to follow a more normal work plan. While Dr. Massatti was the only scientist supported by the SBSC-CPNPP agreement in FY18, other scientists, including Drs. John Bradford, Seth Munson, Mike Duniway, Sasha Reed, Daniel Winkler, and Jayne Belnap, spent a considerable amount of time discussing individual projects and the newly developed 5-Year Research Strategy. Some of these discussions resulted in a publication by Dr. Winkler, in addition to a large group of researchers, practitioners, and others who work on the Colorado Plateau, concerning the restoration challenges facing the Plateau into the future and the types of efforts that may support successful restoration (Winkler et al., 2018).

Colorado↗

USGS2025

Expanding national-scale wildlife disease surveillance systems with research networks

Efficient learning about disease dynamics in free-ranging wildlife systems can benefit from active surveillance that is standardized across different ecological contexts. For example, active surveillance that targets specific individuals and populations with standardized sampling across ecological contexts (landscape-scale targeted surveillance) is important for developing a mechanistic understanding of disease emergence, which is the foundation for improving risk assessment of zoonotic or wildlife-livestock disease outbreaks and predicting hotspots of disease emergence. However, landscape-scale targeted surveillance systems are rare and challenging to implement. Increasing experience and infrastructure for landscape-scale targeted surveillance will improve readiness for rapid deployment of this type of surveillance in response to new disease emergence events. Here, we describe our experience developing and rapidly deploying a landscape-scale targeted surveillance system for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in two free-ranging deer species across their ranges in the United States. Our surveillance system was designed to collect data across individual, population, and landscape scales for future analyses aimed at understanding mechanisms and risk factors of SARS-CoV-2 transmission, evolution, and persistence. Our approach leveraged partnerships between state and federal public service sectors and academic researchers in a landscape-scale targeted surveillance research network. Methods describe our approach to developing the surveillance network and sampling design. Results report challenges with implementing our intended sampling design, specifically how the design was adapted as different challenges arose and summarize the sampling design that has been implemented thus far. In the discussion, we describe strategies that were important for the successful deployment of landscape-scale targeted surveillance, development and operation of the research network, construction of similar networks in the future, and analytical approaches for the data based on the sampling design.

Ecology and Evolution↗

USGS2019

Toward sustainable environmental quality: Priority research questions for North America

Anticipating, identifying, and prioritizing strategic needs represent essential activities by research organizations. Decided benefits emerge when these pursuits engage globally important environment and health goals, including the United Nations Sustainable Development Goals. To this end, horizon scanning efforts can facilitate identification of specific research needs to address grand challenges. We report and discuss 40 priority research questions following engagement of scientists and engineers in North America. These timely questions identify the importance of stimulating innovation and developing new methods, tools, and concepts in environmental chemistry and toxicology to improve assessment and management of chemical contaminants and other diverse environmental stressors. Grand challenges to achieving sustainable management of the environment are becoming increasingly complex and structured by global megatrends, which collectively challenge existing sustainable environmental quality efforts. Transdisciplinary, systems‐based approaches will be required to define and avoid adverse biological effects across temporal and spatial gradients. Similarly, coordinated research activities among organizations within and among countries are necessary to address the priority research needs reported here. Acquiring answers to these 40 research questions will not be trivial, but doing so promises to advance sustainable environmental quality in the 21st century.

Environmental Toxicology and Chemistry↗

USGS2006

Monitored natural attenuation of chlorinated solvents: Moving beyond reductive dechlorination

Monitored natural attenuation (MNA), while a remedy of choice for many sites, can be challenging when the contaminants are chlorinated solvents. Even with many high-quality technical guidance references available, there continue to be challenges implementing MNA at some chlorinated solvent sites. The U.S. Department of Energy, as one organization facing such challenges, is leading a project that will incorporate developing concepts and tools into the existing toolbox for selecting and implementing MNA as a remediation option at sites with chlorinated solvent contamination. The structure and goals of this project were introduced in an article in the Winter 2004 issue of Remediation (Sink et al., 2004). This article is a summary of the three technical areas being developed through the project: mass balance, enhanced attenuation, and characterization and monitoring supporting the first two areas.

Remediation Journal↗

USGS2021

Spatial data reduction through element -of-interest (EOI) extraction

Any large, multifaceted data collection that is challenging to handle with traditional management practices can be branded ‘Big Data.’ Any big data containing geo-referenced attributes can be considered big geospatial data. The increased proliferation of big geospatial data is currently reforming the geospatial industry into a data-driven enterprise. Challenges in the big spatial data domain can be summarized as the ‘Big Vs’ – variety, volume, velocity, veracity and value. Big spatial data sources can be considered in two broad classes, active and passive, as each is impacted to varying degrees. Some of these challenges may be alleviated by reducing unprocessed, or minimally processed, (raw) data to features, which we refer to as the extraction of Elements of Interest (EOI). In fact, many applications require EOI extraction from raw data to enable their basic employment. This chapter presents current state-of-the-art methods to create EOI from some types of georeferenced big data. We classify the data types into two realms: active and passive. Active data are those collected specifically for the purpose to which they are applied. Passive data are those collected for purposes other than those for which they are utilized, included those ‘collected’ for no particular purpose at all. The chapter then presents use cases from both the active and passive spatial realms, including the active applications of terrain feature extraction from digital elevation models and vegetation mapping from remotely-sensed imagery and passive applications like building identification from VGI and point-of-interest data mining from social networks for land use classification. Finally, the chapter concludes with future research needs.

Book chapter↗

USGS2025

Review: The hydrogeology of critical mineral resources relevant to the energy transition

Attaining the goals of the international treaty on climate change (the Paris Agreement) will greatly increase the demand for the critical minerals required to implement clean-energy technologies. This poses both challenges and opportunities to the hydrogeologic community from several perspectives. Here, important insights that the hydrogeological sciences have to offer for mineral exploration, mineral production, and addressing environmental issues related to mining and mine decommissioning are summarized. This study focuses on copper, cobalt, lithium, and rare earths to represent the broad spectrum of critical minerals and illustrate their relevance by referring to projected demands and production rates. The current understanding of the hydrogeologic processes that form major deposits of these minerals are then summarized. Ore is defined as the naturally occurring material from which minerals of economic value can be extracted, where most ore deposits are the products of complex hydrogeologic couplings between fluid flow, heat transport, solute transport, chemical reactions, and mechanical deformation. Exploration models for the discovery of deeper, hidden deposits are potentially informed by hydrogeologic theory and hydrogeochemical processes. Hydrogeologic understanding and methods are also essential to production and recovery. Longstanding challenges are mine dewatering and (conversely) mine water supply, as well as mineral-extraction practices such as spoil heap leaching and in situ mining. New challenges arise from element extraction from subsurface brines. Finally, the quantity of water use and potential environmental impacts of mining on water quality are at the core of ‘social license’: the approval and acceptance of society to mining activities.

Hydrogeology Journal↗

USGS2015

Age at vaccination may influence response to sylvatic plague vaccine (SPV) in Gunnison’s prairie dogs ( Cynomys gunnisoni )

Gunnison’s prairie dogs ( Cynomys gunnisoni ) have been considered at greater risk from Yersinia pestis (plague) infection in the montane portion of their range compared to populations at lower elevations, possibly due to factors related to flea transmission of the bacteria or greater host susceptibility. To test the latter hypothesis and determine whether vaccination against plague with an oral sylvatic plague vaccine (SPV) improved survival, we captured prairie dogs from a C. g. gunnisoni or “montane” population and a C. g. zuniensis or “prairie” population for vaccine efficacy and challenge studies. No differences ( P = 0.63) were found in plague susceptibility in non-vaccinated animals between these two populations; however, vaccinates from the prairie population survived plague challenge at significantly higher rates ( P < 0.01) than those from the montane population. Upon further analysis, we determined that response to immunization was most likely associated with differences in age, as the prairie group was much younger on average than the montane group. Vaccinates that were juveniles or young adults survived plague challenge at a much higher rate than adults ( P < 0.01 and P = 0.02, respectively), but no difference ( P = 0.83) was detected in survival rates between control animals of different ages. These results suggest that host susceptibility is probably not related to the assumed greater risk from plague in the C. g. gunnisoni or “montane” populations of Gunnison’s prairie dogs, and that SPV could be a useful plague management tool for this species, particularly if targeted at younger cohorts.

Colorado↗

USGS2014

Reflections on a vision for integrated research and monitoring after 15 years

In May of 1998, Owen Bricker and his co-author Michael Ruggiero introduced a conceptual design for integrating the Nation’s environmental research and monitoring programs. The Framework for Integrated Monitoring and Related Research was an organizing strategy for relating data collected by various programs, at multiple spatial and temporal scales, and by multiple science disciplines to solve complex ecological issues that individual research or monitoring programs were not designed to address. The concept nested existing intensive monitoring and research stations within national and regional surveys, remotely sensed data, and inventories to produce a collaborative program for multi-scale, multi-network integrated environmental monitoring and research. Analyses of gaps in data needed for specific issues would drive decisions on network improvements or enhancements. Data contributions to the Framework from existing networks would help indicate critical research and monitoring programs to protect during budget reductions. Significant progress has been made since 1998 on refining the Framework strategy. Methods and models for projecting scientific information across spatial and temporal scales have been improved, and a few regional pilots of multi-scale data-integration concepts have been attempted. The links between science and decision-making are also slowly improving and being incorporated into science practice. Experiments with the Framework strategy since 1998 have revealed the foundational elements essential to its successful implementation, such as defining core measurements, establishing standards of data collection and management, integrating research and long-term monitoring, and describing baseline ecological conditions. They have also shown us the remaining challenges to establishing the Framework concept: protecting and enhancing critical long-term monitoring, filling gaps in measurement methods, improving science for decision support, and integrating the disparate integrated science efforts now underway. In the 15 years since the Bricker and Ruggiero (Ecol Appl 8(2):326–329, 1998) paper challenged us with a new paradigm for bringing sound and comprehensive science to environmental decisions, the scientific community can take pride in the progress that has been made, while also taking stock of the challenges ahead for completing the Framework vision.

Aquatic Geochemistry↗

USGS2024

A hierarchical model for eDNA fate and transport dynamics accommodating low concentration samples

Environmental DNA (eDNA) sampling is an increasingly important tool for answering ecological questions and informing aquatic species management; however, several factors currently limit the reliability of ecological inference from eDNA sampling. Two particular challenges are (1) determining species source location(s) and (2) accurately and precisely measuring low concentration eDNA samples in the presence of multiple sources of ecological and measurement variability. The recently introduced eDNA Integrating Transport and Hydrology (eDITH) model provides a framework for relating eDNA measurements to source locations in riverine networks, but little empirical work has been done to test and refine model assumptions or accommodate low concentration samples, that can be systematically undermeasured. To better understand eDNA fate and transport dynamics and our ability to reliably quantify low concentration samples, we developed a hierarchical model and used it to evaluate a fate and transport experiment. Our model addresses several low concentration challenges by modeling the number of copies in each PCR replicate as a latent variable with a count distribution and conditioning detection and quantification on replicate copy number. We provide evidence that the eDNA removal rate declined through time, estimating that over 80% of eDNA was removed over the first 10 m, traversed in 41 s. After this initial period of rapid decay, eDNA decayed slowly with consistent detection through our farthest site 1 km from the release location, traversed in 67.8 min. Our model further allowed us to detect extra-Poisson variation in the allocation of copies to replicates. We extended our hierarchical model to accommodate a continuous effect of inhibitors and used our model to provide evidence for the inhibitor hypothesis and explore the potential implications. While our model is not a panacea for all challenges faced when quantifying low-concentration eDNA samples, it provides a framework for a more complete accounting of uncertainty.

Environmental and Ecological Statistics↗

USGS2016

Stock assessment in inland fisheries: a foundation for sustainable use and conservation

Fisheries stock assessments are essential for science-based fisheries management. Inland fisheries pose challenges, but also provide opportunities for biological assessments that differ from those encountered in large marine fisheries for which many of our assessment methods have been developed. These include the number and diversity of fisheries, high levels of ecological and environmental variation, and relative lack of institutional capacity for assessment. In addition, anthropogenic impacts on habitats, widespread presence of non-native species and the frequent use of enhancement and restoration measures such as stocking affect stock dynamics. This paper outlines various stock assessment and data collection approaches that can be adapted to a wide range of different inland fisheries and management challenges. Although this paper identifies challenges in assessment, it focuses on solutions that are practical, scalable and transferrable. A path forward is suggested in which biological assessment generates some of the critical information needed by fisheries managers to make effective decisions that benefit the resource and stakeholders.

Reviews in Fish Biology and Fisheries↗

USGS2025

Advancing the implementation of coastal restoration in Louisiana through a co-production of science framework

Coastal Louisiana faces complex challenges from the compounding effects of coastal land loss and climate change. The State of Louisiana’s Coastal Protection and Restoration Authority (CPRA) and the RESTORE Act Center of Excellence for Louisiana (LA-COE) have adopted a co-production of science framework to help ensure that scientific research funded through the LA-COE supports the research needs of CPRA and the Louisiana Coastal Master Plan (CMP), a large-scale coastal restoration plan that outlines activities needed to restore and protect Louisiana’s coast. In this paper, we describe the co-production of science framework established between the LA-COE, CPRA, and research projects funded by the LA-COE. Through an iterative process, the Louisiana CMP is revised every 6 years with improved model and scientific information. The LA-COE leverages the cyclical nature of the CMP by working with CPRA to identify research needs for each Request for Proposals solicited by the LA-COE. The LA-COE proposal review process is structured to include anonymous CPRA review of projects to promote the production of actionable science, and once funded, multiple mechanisms are in place to support collaboration between researchers and CPRA staff. We highlight these mechanisms and provide examples of four LA-COE-funded projects where co-produced science is being used by CPRA to inform the CMP and its implementation. Finally, we discuss challenges of co-production within the confines of funding requirements and review restrictions, highlighting how the LA-COE continues to adapt to navigate these challenges and enhance the implementation of co-production throughout the research funding lifecycle.

Louisiana↗