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USGS2013

Seafloor video footage and still-frame grabs from U.S. Geological Survey cruises in Hawaiian nearshore waters

Underwater video footage was collected in nearshore waters (<60-meter depth) off the Hawaiian Islands from 2002 to 2011 as part of the U.S. Geological Survey (USGS) Coastal and Marine Geology Program's Pacific Coral Reef Project, to improve seafloor characterization and for the development and ground-truthing of benthic-habitat maps. This report includes nearly 53 hours of digital underwater video footage collected during four USGS cruises and more than 10,200 still images extracted from the videos, including still frames from every 10 seconds along transect lines, and still frames showing both an overview and a near-bottom view from fixed stations. Environmental Systems Research Institute (ESRI) shapefiles of individual video and still-image locations, and Google Earth kml files with explanatory text and links to the video and still images, are included. This report documents the various camera systems and methods used to collect the videos, and the techniques and software used to convert the analog video tapes into digital data in order to process the images for optimum viewing and to extract the still images, along with a brief summary of each survey cruise.

Hawai'i↗

USGS2024

Pilot framework for fish habitat assessments across tidal and non tidal waters in the Patuxent River Basin

As part of the 2014 Chesapeake Bay Watershed Agreement, all Bay States and the District of Columbia have committed to improving the condition of the Bay, which includes a goal to achieve sustainable fisheries. One outcome under that broad goal is improved effectiveness of fish habitat conservation and preservation efforts. In support of that outcome, the U.S. Geological Survey Eastern Ecological Science Center (USGS-EESC) and the National Oceanic and Atmospheric Association’s National Centers for Coastal Ocean Science (NOAA-NCCOS) are actively developing datasets, methods, and analyses to conduct fish habitat assessments in the Chesapeake Bay watershed, guided by recommendations from a regional stakeholder workshop held by the Chesapeake Bay Program’s (CBP) Fish Habitat Action Team (FHAT) in 2018. The joint USGS and NOAA team has been collaborating on methods for conducting inland and estuarine assessments and exploring whether a seamless headwater to estuary assessment could be developed. The goals of this assessment are to benefit both State and Federal fisheries managers, help advance fisheries science, and provide beneficial information for the public. While past national and regional assessments (e.g. the National Fish Habitat Partnership National Assessment) treated inland and estuarine fish habitat conditions separately due to differences in environments, GIS data representation, and data availability, a seamless habitat assessment could be of value for a broad range of stakeholders as many fish species, several of which are invasive or under federal jurisdiction, use habitats across both inland and estuarine waters. This project developed a pilot framework, explored and tested methods necessary for a finer scale, seamless assessment across both inland and estuarine waters, and demonstrated its use. Although there was interest by the CBP FHAT for the generation of a Baywide fish habitat assessment that spanned tidal salt, tidal fresh, warm non-tidal and cold non-tidal waters, there are a myriad of implementation details and considerations around conducting a Baywide assessment across all four of these general habitat areas. Therefore, the practical need to conduct a tributary-specific pilot assessment arose. At the beginning of this pilot process, members of the FHAT were presented with a decision matrix to choose a study basin using factors such as data availability and tributary size. FHAT members chose the Patuxent River basin, which has been relatively well sampled and studied. Several spatial frameworks were considered before selection of an inclusive gridded framework for summary and analysis that represented inland drainage networks and landscape influences as well as estuarine bathymetry. A suite of landscape and in-water stressor variables were summarized into the framework and were largely generalized over time. In order to assess the viability of the framework, we chose to use species distribution modeling for each of the species to test the framework’s ability to predict habitat use of non-tidal resident, estuarine resident, and migratory species. Tessellated darter (Etheostoma olmstedi), American eel (Anguilla rostrata), and white perch (Morone americana) were chosen as illustrative fish species based on data availability, and differences in life history and habitat use. A nested modeling approach, which involved successive model runs at multiple scales (1000m, 100m, and 10m raster grids) was developed to examine differences in variable importance at different spatial scales and to enhance modeling efficiency. For white perch, a complementary modeling analysis was performed for variables available only in estuarine waters. For all testing, an ensemble modeling approach was conducted, using a suite of potential statistical techniques driven by model strength and variable predictive power. The statistical testing that we conducted was intended only to test the framework and modeling approach, and not to definitively predict all habitats where specific fish species might be present. The modeling we conducted to test the framework did have some limitations. For example, the spatial distribution of favorable habitat areas for white perch was likely influenced by the predominance of fish survey locations near the center channel of the river and the use of generalized in-water conditions. For all species, the use of juvenile and adult fish survey data limits the estimation of habitat use to those life stages. Despite such limitations of the data inputs and modeling approach, we found the framework could seamlessly predict fish habitat distribution across freshwater and tidal environments and integrate the influence of landscape stressors with local in-water factors. The developed framework presented to the Sustainable Fisheries Goal Implementation Team (GIT) and FHAT is informative and could potentially be used for other modeling applications in the Chesapeake Bay watershed and elsewhere. In particular the framework and modeling approach lend themselves to evaluating living resource distributions and underlying habitat conditions in shallow tidal waters and beyond, as recommended by the recent Comprehensive Evaluation of System Response (CESR) report from the Chesapeake Bay Program.

Maryland↗

USGS2003

Monitoring amphibians in Great Smoky Mountains National Park

Amphibian species have inexplicably declined or disappeared in many regions of the world, and in some instances, serious malformations have been observed. In the United States, amphibian declines frequently have occurred even in protected areas. Causes for the declines and malformations probably are varied and may not even be related. The seemingly sudden declines in widely separated areas, however, suggests a need to monitor amphibian populations as well as identify the causes when declines or malformations are discovered. In 2000, the President of the United States and Congress directed Department of the Interior (DOI) agencies to develop a plan to monitor the trends in amphibian populations on DOI lands and to conduct causes of declines. The DOI has stewardship responsibilities over vast land holdings in the United States, much of it occupied by, or potential habitat for, amphibians. The U.S. Geological Survey (USGS) was given lead responsibility for planning and organizing this program, named the Amphibian Research and Monitoring Initiative (ARMI). Authorization carried the mandate to set up a national amphibian monitoring program on Federal lands, to develop the sampling techniques and biometrical analyses necessary to determine status and trends, and to identify possible causes of amphibian declines and malformations. The biological importance of Great Smoky Mountains National Park has been recognized by its designation as an International Biosphere Reserve. As such, it is clearly the leading region of significance for amphibian research. Although no other region shares the wealth of amphibians as found in the Great Smokies (31 species of salamanders, and 13 of frogs), the entire southern and mid-section of the Appalachian Mountain chain is characterized by a high diversity of amphibians, and inventories and monitoring protocols developed in the Smokies likely will be applicable to other Appalachian National Park Service properties. From 1998 to 2001, USGS biologists carried out a pilot inventory and monitoring research project in Great Smoky Mountains National Park. A variety of inventory, sampling, and monitoring techniques were employed and tested. These included wide-scale visual encounter surveys of amphibians at terrestrial and aquatic sites, intensive monitoring of selected plots, randomly placed small-grid plot sampling, litterbag sampling in streams, monitoring nesting females of selected species, call surveys, and monitoring specialized habitats, such as caves. Coupled with information derived from amphibian surveys on Federal lands using various other techniques (automated frog call data loggers, PVC pipes, drift fences, terrestrial and aquatic traps), an amphibian monitoring program was designed to best meet the needs of biologists and natural resource managers after taking into consideration the logistics, terrain, and life histories of the species found within Great Smoky Mountains National Park. This report provides an overview of the Park’s amphibians, the factors affecting their distribution, a review of important areas of biodiversity, and a summary of amphibian life history in the Southern Appalachians. In addition, survey techniques are described as well as examples of how the techniques are set up, a critique of what the results tell the observer, and a discussion of the limitations of the techniques and the data. The report reviews considerations for site selection, outlines steps for biosecurity and for processing diseased or dying animals, and provides resource managers with a decision tree on how to monitor the Park’s amphibians based on different levels of available resources. It concludes with an extensive list of references for inventorying and monitoring amphibians. USGS and Great Smoky Mountains National Park biologists need to establish cooperative efforts and training to ensure that congressionally mandated amphibian surveys are performed in a statistically rigorous and biologically meaningful manner, and that amphibian populations on Federal lands are monitored to ensure their long-term survival. The research detailed in this report will aid these cooperative efforts.

North Carolina, Tennessee↗

USGS2021

Documentation of methods and inventory of irrigation information collected for the 2015 U.S. Geological Survey estimated use of water in the United States

The U.S. Geological Survey (USGS) National Water-Use Science Project strives to report water-use estimates using the best available information for the period of the estimates. The information available on water used for irrigation activities varies from State to State and in some areas from county to county within a State, which results in many information sources and methods being used to estimate water withdrawals and consumption for the Nation. The variety of estimation methods makes it difficult to compare information across States and makes it difficult to understand how different methods or data sources bias irrigation water-use estimates and trends over time. The sources of information and methods used by USGS Water Science Centers to estimate irrigation water use (the number of irrigated acres by irrigation system type, withdrawal values by water source type, and consumed-water values) for 2015 are compiled and described herein to assist with interpreting the water-use estimates. State-level summaries of information sources and methods are compiled in appendix 1, and a dataset of calendar-year, county-level estimates of actual evapotranspiration for the conterminous United States and Hawaii is provided in an associated USGS data release.

Scientific Investigations Report↗

USGS2022

Hydrology of the Yucaipa groundwater subbasin: Characterization and integrated numerical model, San Bernardino and Riverside Counties, California

Executive Summary Water management in the Santa Ana River watershed in San Bernardino and Riverside Counties in southern California is a complex task with various water purveyors navigating geographic, geologic, hydrologic, and political challenges to provide a reliable water supply to stakeholders. As the population has increased throughout southern California, so has the demand for water. The Yucaipa groundwater subbasin (hereafter referred to as “Yucaipa subbasin”), one of nine groundwater subbasins in what the California Department of Water Resources (DWR) refers to as the Upper Santa Ana Valley groundwater basin (California Department of Water Resources, 2016; the DWR naming convention is used within this report), is no exception; steady population growth since the 1940s and changes in water use has forced local water purveyors to regularly adapt their water infrastructure to meet demand. Groundwater has historically been the dominant source of water in the Yucaipa subbasin although recently, imported water via the California State Water Project has augmented the total water supply. Despite the influx of imported water, overall demand for groundwater continues to rise, and there is concern by local water managers that groundwater levels may adversely impact water supply and (or) decline to a point where it will be uneconomical to produce water, severely limiting the ability of local agencies to meet water-supply demand. To better understand the hydrogeology and water resources in the Yucaipa subbasin, the U.S. Geological Survey (USGS) and the San Bernardino Valley Municipal Water District initiated a cooperative study to understand the hydrogeologic system of the Yucaipa subbasin and in the encompassing Yucaipa Valley watershed (YVW). A three-dimensional hydrogeologic framework model was constructed to quantify the structure and extent of hydrogeologic units. Historical and present-day groundwater conditions were characterized to evaluate the groundwater-flow system. Lastly, the Yucaipa Integrated Hydrological Model (YIHM) was developed to simulate the integrated surface-water and groundwater systems, including natural and anthropogenic (that is, human influenced) recharge and discharge throughout the study area from 1947 to 2014. The Yucaipa subbasin is an inland groundwater basin located about 12 miles (mi) southeast of the City of San Bernardino and about 75 mi east of Los Angeles, California. The subbasin encompasses about 39 square miles (mi 2 ), including the City of Yucaipa. The geographic extent of the Yucaipa subbasin was established by the California Department of Water Resources, who defined the boundaries of the subbasin based on hydrogeologic transitions between crystalline rock and basin-fill sediments, active fault strands, surface-water drainage divides, and a portion of an adjudicated groundwater management boundary. Two groundwater subbasins of the Upper Santa Ana Valley groundwater basin are adjacent to the Yucaipa subbasin, the San Bernardino groundwater subbasin to the west and the San Timoteo groundwater subbasin to the south. The Yucaipa subbasin is encompassed by the YVW, which is in turn comprised of three sub-watersheds that represent surface-water flow across and within the Yucaipa subbasin. Although the Yucaipa subbasin is the specific area of interest for this study, the entire YVW was considered for the purposes of characterizing the hydrogeology of the Yucaipa subbasin and for development of the YIHM. The purposes of this report are to (1) describe the hydrologic and hydrogeologic settings of the Yucaipa subbasin and aquifer system, (2) describe the construction and calibration of the fully coupled groundwater and surface-water flow model for the Yucaipa subbasin and the encompassing YVW, referred to as the YIHM, and (3) present numerical results, including water budgets and hydraulic heads, and the effect of pumping and climate stresses (precipitation and temperature) on water-budget components.

California↗

USGS2000

Managers' summary - Ecological studies of the Pryor Mountain Wild Horse Range, 1992-1997

Ecological Studies of the Pryor Mountain Wild Horse Range, 1992-1997 provides a synthesis of key findings of landscape-scale, interdisciplinary studies of the effects of wild horses and native ungulates on a rugged, mountain ecosystem. This is perhaps the most comprehensive study of a wild horse herd conducted. This was a complex study and one involving a truly interagency approach. Six agencies either provided input to research priority setting, funding, or both. The agencies included the Bureau of Land Management, National Park Service, U.S. Geological Survey, Montana Department of Fish, Wildlife and Parks, Wyoming Game and Fish Department, and U.S. Forest Service. The major research direction and effort came from the U.S. Geological Survey and Natural Resources Ecology Lab, Colorado State University with Montana State University and the University of Kentucky also participating. Ungulate monitoring was conducted by the U.S. Geological Survey, Biological Resources Division, Bureau of Land Management, Billings Field Office and the Montana Fish and Wildlife Parks, with funding by Bighorn Canyon National Recreation Area. Many other individuals and groups were involved and deserve credit. The report printing was made possible with funds from the Bureau of Land Management, Wild Horse and Burro Program, Washington Office. This report was prepared by the Information Management Project, Midcontinent Ecological Science Center, U.S. Geological Survey.

Montana, Wyoming↗

USGS2008

Enhancing The National Map Through Tactical Planning and Performance Monitoring

Tactical planning and performance monitoring are initial steps toward improving 'the way The National Map works' and supporting the U.S. Geological Survey (USGS) Science Strategy. This Tactical Performance Planning Summary for The National Map combines information from The National Map 2.0 Tactical Plan and The National Map Performance Milestone Matrix. The National Map 2.0 Tactical Plan is primarily a working document to guide The National Map program's execution, production, and metrics monitoring for fiscal years (FY) 2008 and 2009. The Tactical Plan addresses data, products, and services, as well as supporting and enabling activities. The National Map's 2-year goal for FY 2008 and FY 2009 is to provide a range of geospatial products and services that further the National Spatial Data Infrastructure and underpin USGS science. To do this, the National Geospatial Program will develop a renewed understanding during FY 2008 of key customer needs and requirements, develop the infrastructure to support The National Map business model, modernize its business processes, and reengineer its workforce. Priorities for The National Map will be adjusted if necessary to respond to changes to the project that may impact resources, constrain timeframes, or change customer needs. The supporting and enabling activities that make it possible to produce the products and services of The National Map will include partnership activities, improved compatibility of systems, outreach, and integration of data themes.

Fact Sheet↗

USGS2018

Population genomic surveys for six rare plant species in San Diego County, California

San Diego County is a hotspot of biodiversity, situated at the intersection of the Baja peninsula, the California floristic province, and the desert southwest. This hotspot is characterized by a high number of rare and endemic species, which persist alongside a major urban epicenter. San Diego County has implemented a strategic management plan that identifies species, based on low numbers of occurrences or high level of threat, for which management practices are recommended. In creating a management plan for rare species, it is important to strike a balance between preserving locally adapted traits and maintaining genetic diversity, as species’ ranges fluctuate in response to a changing climate and habitat fragmentation. This project, in partnership with the San Diego Natural History Museum, aims to provide a reference point for the current status of genetic diversity of rare plant species that will inform future preservation and restoration efforts. We focused on six threatened or endangered plant species: Acanthomintha ilicifolia , Baccharis vanessae , Chloropyron maritimum ssp. maritimum , Deinandra conjugens , Dicranostegia orcuttiana , and Monardella viminea . For each species, botanists from the San Diego Natural History Museum visited all known occurrences in San Diego County and collected leaf tissue for genetic and cytological analysis. We then developed a panel of genetic markers to estimate genetic diversity and population structure. This population genetic survey provided insight into the amount of genetic differentiation across each species’ range, identified isolated occurrences potentially subject to inbreeding or genetic bottlenecks, and identified areas that are rich sources of allelic diversity. Finally, we convened a panel of experts to review results and compatible management options for each species. A summary of the management workshop is included in this report. Overall, we found low genetic differentiation among occurrences across the San Diego region for all species, with the exception of A. ilicifolia . Relative inbreeding was low and consistent across sites, and genetic diversity across sites was variable, with noted exceptions. These findings allow for a wide array of management options that are compatible with panmictic population structure in five of the six surveyed species.

California↗

USGS1994

Summary of ground-water conditions in Arizona, 1987-90

Annual ground-water withdrawals in Arizona were 2.9, 3.3, 3.6, and 3.4 million acre-feet for calendar years 1987. 1988, 1989, and 1990. The average annual ground-water withdrawal for Arizona from 1980-89 was 3.7 million acre-feet, which was the lowest average annual withdrawal for any decade since the 1940' s. Since 1947, annual ground-water withdrawals in Arizona were at the lowest rate in 1983 and at the second lowest rate in 1987. For 1987-90, the distribution of ground-water use was 11.8 percent for municipal, 8.3 percent for industnal, 72.6 percent for agriculture, and 7.3 percent for draining irrigated lands. More than 94 percent of the ground-water withdrawals in Arizona occurred in the Basin and Range lowlands province during 1987-90. This province contains the two areas with the largest rates of ground-water withdrawal in Arizona--the Salt River Valley and the lower Santa Cruz basin. The average annual ground-water withdrawal for the Salt River Valley from 1980-89 is 1,013,000 acre-feet, which is the lowest average annual withdrawal for any decade since the 1930 's. Ground-water withdrawals in the lower Santa Cruz basin during 1990 were the lowest on record since 1940. In 1985, the Central Arizona Project began delivering Colorado River water to central Arizona to mitigate ground-water overdraft. The Harquahala basin began receiving water from the Central Arizona Project in 1985. From 1985 to 1990, ground-water withdrawals decreased from 59,000 acre-feet to 2,000 acre-feet, and water levels rose as much as 70 feet.

Arizona↗

USGS2011

Water availability and use pilot: Methods development for a regional assessment of groundwater availability, southwest alluvial basins, Arizona

Executive Summary: Arizona is located in an arid to semiarid region in the southwestern United States and is one of the fastest growing States in the country. Population in Arizona surpassed 6.5 million people in 2008, an increase of 140 percent since 1980, when the last regional U.S. Geological Survey (USGS) groundwater study was done as part of the Regional Aquifer System Analysis (RASA) program. The alluvial basins of Arizona are part of the Basin and Range Physiographic Province and cover more than 73,000 mi 2 , 65 percent of the State's total land area. More than 85 percent of the State's population resides within this area, accounting for more than 95 percent of the State's groundwater use. Groundwater supplies in the area are expected to undergo further stress as an increasing population vies with the State's important agricultural sector for access to these limited resources. To provide updated information to stakeholders addressing issues surrounding limited groundwater supplies and projected increases in groundwater use, the USGS Groundwater Resources Program instituted the Southwest Alluvial Basins Groundwater Availability and Use Pilot Program to evaluate the availability of groundwater resources in the alluvial basins of Arizona. The principal products of this evaluation of groundwater resources are updated groundwater budget information for the study area and a proof-of-concept groundwater-flow model incorporating several interconnected groundwater basins. This effort builds on previous research on the assessment and mapping of groundwater conditions in the alluvial basins of Arizona, also supported by the USGS Groundwater Resources Program. Regional Groundwater Budget: The Southwest Alluvial Basins-Regional Aquifer System Analysis (SWAB-RASA) study produced semiquantitative groundwater budgets for each of the alluvial basins in the SWAB-RASA study area. The pilot program documented in this report developed new quantitative estimates of groundwater budget components using recent (2000-2007) data and methods of data analysis. Estimates of inflow components, including mountain-front recharge, incidental recharge from irrigation of agriculture, managed recharge from recharge facilities, interbasin underflow from upgradient basins, and streamflow losses, are quantified for recent time periods. Mountain-front recharge is the greatest inflow component to the groundwater system and was estimated using two methods: a basin characteristic model and new precipitation information used in a previously developed regression equation. Annual mountain-front recharge for the study area for 1940-2007 estimated by the two methods is 730,000 acre-ft for the basin characteristic model and 643,000 acre-ft for the regression equation, representing 1.5 percent and 1.3 percent of precipitation, respectively. Outflow components, including groundwater withdrawals, evapotranspiration, and interbasin flow to downgradient basins, are also presented for recent time periods. Groundwater withdrawals accounted for the largest share of the water budget, with nearly 2.4 million acre-ft per year withdrawn from the study area in recent years. Evapotranspiration from groundwater was estimated at nearly 1.3 million acre-ft per year for the study area using a newly developed method incorporating vegetation indices from satellite images and land cover information. For water-budget components with temporal variation that could be assessed from available data, estimates for intervening time periods since before development were also developed. An estimate of aquifer storage change, representing both gains to and losses from the groundwater system since before development, was derived for the most developed basins in the study area using available estimates of groundwater-level changes and storage coefficients. An overall storage loss of 74.5 million acre-ft was estimated for these basins within the study area. Demonstration

Arizona↗

USGS2008

Archive of digital boomer seismic reflection data collected during USGS field activity 96LCA04 in Lakes Mabel and Starr, Central Florida, August 1996

In August of 1996, the U.S. Geological Survey conducted geophysical surveys of Lakes Mabel and Starr, central Florida, as part of the Central Highlands Lakes project, which is part of a larger USGS Lakes and Coastal Aquifers (LCA) study. This report serves as an archive of unprocessed digital boomer seismic reflection data, trackline maps, navigation files, Geographic Information System (GIS) files, observer's logbook; and formal Federal Geographic Data Committee (FGDC) metadata. Filtered and gained (a relative increase in signal amplitude) digital images of the seismic profiles are also provided. Refer to the Acronyms page for expansions of acronyms and abbreviations used in this report. For detailed information about the hydrologic setting of Lake Starr and the interpretation of some of these seismic reflection data, see Swancar and others (2000) at http://fl.water.usgs.gov/publications/Abstracts/wri00_4030_swancar.html. The archived trace data are in standard Society of Exploration Geophysicists (SEG) SEG-Y format (Barry and others, 1975) and may be downloaded and processed with commercial or public domain software such as Seismic Unix (SU). Example SU processing scripts and USGS software for viewing the SEG-Y files (Zihlman, 1992) are also provided. The USGS Florida Integrated Science Center (FISC) - St. Petersburg assigns a unique identifier to each cruise or field activity. For example, 96LCA04 tells us the data were collected in 1996 for the Lakes and Coastal Aquifers (LCA) study and the data were collected during the fourth field activity for that project in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity ID. The boomer plate is an acoustic energy source that consists of capacitors charged to a high voltage and discharged through a transducer in the water. The transducer is towed on a sled floating on the water surface and when discharged emits a short acoustic pulse, or shot, which propagates through the water and sediment column. The acoustic energy is reflected at density boundaries (such as the seafloor or sediment layers beneath the lake bottom), detected by the receiver (a hydrophone streamer), and recorded by a PC-based seismic acquisition system. This process is repeated at timed intervals (for example, 0.5 s) and recorded for specific intervals of time (for example, 100 ms). In this way, a two-dimensional (2-D) vertical image of the shallow geologic structure beneath the ship track is produced. Figure 1 displays the acquisition geometry. Refer to table 1 for a summary of acquisition parameters. Table 2 lists trackline statistics. Scanned images of the handwritten cruise logbook (1,020-KB PDF) is also provided as a PDF file. The unprocessed seismic data are stored in SEG-Y format (Barry and others, 1975). For a detailed description of the data format, refer to the SEG-Y Format page. See the How To Download SEG-Y Data page for download instructions. The printable profiles provided here are GIF images that were filtered and gained using Seismic Unix software. Refer to the Software page for details about the processing and examples of the processing scripts. The processed SEG-Y data were exported to Chesapeake Technology, Inc. (CTI) SonarWeb software to produce an interactive version of the seismic profile that allows the user to obtain a geographic location and depth from the profile for a curser position. This information is displayed in the status bar of the browser.

Florida↗

USGS2003

A summary of the San Francisco tidal wetlands restoration series

The four topical articles of the Tidal Wetlands Restoration Series summarized and synthesized much of what is known about tidal wetlands and tidal wetland restoration in the San Francisco Estuary (hereafter “Estuary”). Despite a substantial amount of available information, major uncertainties remain. A major uncertainty with regard to fishes is the net benefit of restored tidal wetlands relative to other habitats for native fishes in different regions of the Estuary given the presence of numerous invasive alien species. With regard to organic carbon, a major uncertainty is the net benefit of land use change given uncertainty about the quantity and quality of different forms of organic carbon resulting from different land uses. A major challenge is determining the flux of organic carbon from open systems like tidal wetlands. Converting present land uses to tidal wetlands will almost certainly result in increased methylation of mercury at the local scale with associated accumulation of mercury within local food webs. However, it is unclear if such local accumulation is of concern for fish, wildlife or humans at the local scale or if cumulative effects at the regional scale will emerge. Based on available information it is expected that restored tidal wetlands will remain stable once constructed; however, there is uncertainty associated with the available data regarding the balance of sediment accretion, sea-level rise, and sediment erosion. There is also uncertainty regarding the cumulative effect of many tidal restoration projects on sediment supply. The conclusions of the articles highlight the need to adopt a regional and multidisciplinary approach to tidal wetland restoration in the Estuary. The Science Program of the CALFED effort provides an appropriate venue for addressing these issues.

California↗

USGS2000

Northeastern Gulf of Mexico Coastal and Marine Ecosystem Program: Coastal Characterization: an overview and update

The U.S. Geological Surveys Biological Resources Division (BRD) mission is to provide leadership in gathering, analyzing, and disseminating biological information as support for sound management of the Nation's natural resources. Since becoming operational in October of 1996 through the transfer of programs from various bureaus within the Department of the Interior, the BRD, in cooperation with other Federal, State, and local partners, has begun research, inventory and monitoring, information sharing, and technology transfer. Through these activities, the BRD is fostering an understanding of biological systems and their benefits to society, and providing the essential scientific support and technical assistance required for management and policy decisions. The role of BRD' s National Wetlands Research Center (NWRC) in Lafayette, Louisiana, with project offices in Baton Rouge, LA and Gulf Breeze, FL, is to provide leadership in research and development related to the Nation's natural resources for the Southeast. The research focuses on wetlands ecology, animal ecology, and the development and application of spatial analysis techniques for natural resource related studies. Current geographic information system (GIS) technologies in use at NWRC are designed to provide natural resource managers with the on-line data and computerized techniques necessary to make informed decisions. Major GIS activities at NWRC include: compilation and analysis of digital databases for monitoring of natural resources; integration and transfer of databases with existing digital databases from various sources into a comprehensive GIS; and development of multifunctional decision support systems for natural resource managers using these data. NWRC is also an active participant in the National Information Infrastructure (NIT), in particular the National Spatial Data Infrastructure (NSDI) and the National Biological Information Infrastructure (NBTI), which will facilitate the dissemination of research results and other knowledge and information gained from these efforts. This summary and the three summaries that follow provides an overview and update of a four year study entitled, Northeastern Gulf of Mexico Coastal and Marine Ecosystem Program: Coastal Characterization.

Minerals Management Service↗

USGS2020

North Atlantic right whale (Eubalaena glacialis) scenario planning summary report

Scenario planning provides a structured framework that can be used in strategic planning to help manage risk and prioritize actions (Schwartz 1996; Peterson et al. 2003). By providing a mechanism to communicate about complex situations, scenario planning encourages “out-of-the-box” thinking to help groups assess the impacts of plausible future scenarios on a target or resource. The outcomes from scenario planning can be used to improve management decisions, highlight data gaps, and/or identify future science priorities (Star et al. 2015; Borggaard et al. 2019). The application of scenario planning by resource management organizations (e.g., Borggaard et al. 2019; Runyon et al. 2020; Star et al. 2015) and the urgency surrounding the recovery of the critically endangered North Atlantic right whale (Eubalaena glacialis), led to a 2018 NOAA Fisheries scenario planning initiative for the species. In addition to complementing the many management and conservation efforts already underway, this initiative was designed to address the uncertainties around future anthropogenic and environmental changes and how these uncertainties may impact species recovery. We used a scenario planning framework to explore plausible future conditions for North Atlantic right whales and to develop possible options to address those conditions and improve recovery. Specific objectives were to: 1) better understand the challenges of right whale management in a changing climate; 2) identify potential research activities and recovery needs across the species’ range; 3) increase coordination and collaboration related to recovery efforts; and 4) explore how scenario planning can be used to support decisions. Using projected changes in ocean conditions coupled with anthropogenic stressors, we built four plausible future scenarios for right whales. These scenarios helped identify priority research and management actions that NOAA Fisheries and our partners can undertake to improve right whale recovery. We identified priority actions related to science, management, and partnerships including, but not limited to, 1) research on shifting spatial and temporal distributions of right whales and prey in a changing climate; 2) development of technology to further reduce impacts from human activities; 3) continuation of ongoing management efforts related to vessel traffic and fishing; and 4) continued maintenance of existing and development of new partnerships (e.g., industry engagement in problem solving). This scenario planning exercise helped prioritize North Atlantic right whale management and science needs in light of changing ocean conditions and anthropogenic impacts. It can also serve as a reference for how NOAA Fisheries and its partners can better prepare for multiple plausible futures while complementing other on-going initiatives. Priorities identified here can be considered in conjunction with implementation and monitoring actions such as with the Atlantic Large Whale Take Reduction Team (ALWTRT) and/or regional Right Whale U.S. Implementation Teams. The framework can also be repeated and improved upon as additional information becomes available to support future exercises.

Technical Memorandum↗

USGS2012

Archive of digital boomer subbottom data collected during USGS cruise 05FGS01 offshore east-central Florida, July 17-29, 2005

In July of 2005, the U.S. Geological Survey (USGS), in cooperation with the Florida Geological Survey (FGS), conducted a geophysical survey of the Atlantic Ocean offshore of Florida's east coast from Flagler Beach to Daytona Beach. This report serves as an archive of unprocessed digital boomer subbottom data, trackline maps, navigation files, Geographic Information System (GIS) files, Field Activity Collection System (FACS) logs and formal Federal Geographic Data Committee (FGDC) metadata. Filtered and gained (showing a relative increase in signal amplitude) digital images of the seismic profiles are also provided. Refer to the Acronyms page for expansions of acronyms and abbreviations used in this report. The USGS Saint Petersburg Coastal and Marine Science Center (SPCMSC) assigns a unique identifier to each cruise or field activity. For example, 05FGS01 tells us the data were collected in 2005 for cooperative work with the FGS and the data were collected during the first field activity for that project in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity ID. The boomer subbottom processing system consists of an acoustic energy source that is made up of capacitors charged to a high voltage and discharged through a transducer in the water. The transducer is towed on a sled floating on the water surface and when discharged emits a short acoustic pulse, or shot, which propagates through the water column and shallow stratrigraphy below. The acoustic energy is reflected at density boundaries (such as the seafloor or sediment layers beneath the seafloor), detected by the receiver (a hydrophone streamer), and recorded by a PC-based seismic acquisition system. This process is repeated at timed intervals (for example, 0.5 s) and recorded for specific intervals of time (for example, 100 ms). In this way, a two-dimensional (2-D) vertical image of the shallow geologic structure beneath the ship track is produced. Figure 1 displays the acquisition geometry. Refer to table 1 for a summary of acquisition parameters and table 2 for trackline statistics. The archived trace data are in standard Society of Exploration Geophysicists (SEG) SEG Y format (Barry and others, 1975), except an ASCII format is used for the first 3,200 bytes of the card image header instead of the standard EBCDIC format. For a detailed description about the recorded trace headers, refer to the SEG Y Format page. The SEG Y files may be downloaded and processed with commercial or public domain software such as Seismic Unix (Cohen and Stockwell, 2005). See the How To Download SEG Y Data page for download instructions. The printable profiles provided here are GIF images that were processed and gained using SU software; refer to the Software page for links to example SU processing scripts. The processed SEG Y data were also exported to Chesapeake Technology, Inc. (CTI) SonarWeb software to produce a geospatially interactive version of the profile that allows the user to obtain a geographic location and depth from the profile for a given cursor position; this information is displayed in the status bar of the browser. Please note that clicking on the profile image switches it to "Expanded View" (a compressed image of the entire line) and cursor tracking is not available in this mode.

Florida↗

USGS2014

Synthesis of studies in the fall low-salinity zone of the San Francisco Estuary, September-December 2011

In fall 2011, a large-scale investigation (fall low-salinity habitat investigation) was implemented by the Bureau of Reclamation in cooperation with the Interagency Ecological Program to explore hypotheses about the ecological role of low-salinity habitat in the San Francisco Estuary—specifically, hypotheses about the importance of fall low-salinity habitat to the biology of delta smelt Hypomesus transpacificus , a species endemic to the San Francisco Estuary and listed as threatened or endangered under federal and state endangered species legislation. The Interagency Ecological Program is a consortium of 10 agencies that work together to develop a better understanding of the ecology of the Estuary and the effects of the State Water Project and Federal Central Valley Project operations on the physical, chemical, and biological conditions of the San Francisco Estuary. The fall low-salinity habitat investigation constitutes one of the actions stipulated in the Reasonable and Prudent Alternative issued with the 2008 Biological Opinion of the U.S. Fish and Wildlife Service, which called for adaptive management of fall Sacramento-San Joaquin Delta outflow following “wet” and “above normal” water years to alleviate jeopardy to delta smelt and adverse modification of delta smelt critical habitat. The basic hypothesis of the adaptive management of fall low-salinity habitat is that greater outflows move the low-salinity zone (salinity 1–6), an important component of delta smelt habitat, westward and that moving the low-salinity zone westward of its position in the fall of recent years will benefit delta smelt, although the specific mechanisms providing such benefit are uncertain. An adaptive management plan was prepared to guide implementation of the adaptive management of fall low-salinity habitat and to reduce uncertainty. This report has three major objectives: • To provide a summary of the results from the first year of coordinated fall low-salinity habitat studies and monitoring. • To provide a synthesis of the results of the fall low-salinity habitat studies and other ongoing research and monitoring, to determine if the available information supports the hypotheses behind the adaptive management of fall low-salinity habitat as set forth in the adaptive management plan. • To begin to put the results from the fall low-salinity habitat studies into context within the larger body of knowledge regarding the San Francisco Estuary and, in particular, the upper San Francisco Estuary, including the Sacramento-San Joaquin Delta, Suisun Bay, and associated embayments. The basic approach of this report is to evaluate predictions derived from the hypotheses included in the conceptual model developed within the adaptive management plan. All available data from studies and monitoring conducted in fall 2011 and similar data from fall 2006, which was the most recent wet year preceding 2011, were considered. Data from 2005 and 2010 were also considered, to include the conditions antecedent to those years. Many of the predictions either could not be evaluated with the data available, or the needed data were not collected. Most of the predictions that could be addressed involved either the abiotic habitat components (that is, the physical environment) or delta smelt responses. In general, the fall low-salinity habitat investigation has been largely inconclusive as of the writing of this report. This is not to be unexpected in the first year of what is intended to be a multi-year adaptive-management effort. This report can be viewed as the first chapter of a “living document” that is to be continually updated as part of the adaptive management cycle. The results of this report, especially predictions with insufficient data for evaluation, indicate a number of science-based approaches to improve the fall low-salinity habitat investigations: • Develop a method of measuring “hydrodynamic complexity.” This concept is central to a number of the predictions that could not be evaluated. • Determine if wind speed warrants a stand-alone prediction. The wind-speed prediction is directly related to the turbidity predictions, and wind is only one of several factors important for determining turbidity. • Determine the correct spatial and temporal scale or scales necessary for monitoring and for studies to address the predicted abiotic and biotic responses. Many of the assessments in this report were based on monthly sampling of dynamic habitat components, such as phytoplankton and zooplankton populations, that can change on daily scales. • Address the nutrient predictions as part of developing a phytoplankton production model that includes nutrient cycling and other important processes, if feasible. At a minimum develop a mechanistic conceptual model to support more processed-based interpretations of data or design of new studies, rather than making simple predictions of increase or decrease. • Determine if studies of predation rates are feasible in areas where there are delta smelt.

California↗

USGS2022

Drainage infrastructure and groundwater system response to changes in sea level and precipitation, Broward County, Florida

Executive Summary Southeast Florida is highly susceptible to flooding because of its low topography and porous, highly permeable Biscayne aquifer. Rising seas will likely result in increased groundwater levels in parts of Broward County, Florida, that will reduce available soil storage and therefore increase the likelihood of inundation and flooding from precipitation events. Moreover, rising seas may also reduce the capacity of the coastal water-control structures to discharge inland waters to tidal areas, thereby increasing surface-water stage and nearby groundwater levels. Increased rainfall intensity will likely further increase peak surface-water stages and groundwater levels, more quickly fill the reduced soil storage capacity, and increase the likelihood for inundation. Managers and planners in Broward County, Florida, face the challenge of understanding and preparing for the consequent risk to residents, businesses, and critical infrastructure posed by increased sea level and precipitation. The U.S. Geological Survey, in cooperation with the Broward County Environmental Planning and Resilience Division, has developed a groundwater/surface-water model to evaluate the response of the drainage infrastructure and groundwater system in Broward County to projected increases in sea level and potential changes in precipitation. The model was constructed using Modular Finite-Difference Groundwater Flow Model Newton formulation, with the surface-water system represented using the Surface-Water Routing process and the Urban Runoff process. The aquifer layering and flow parameters rely heavily on existing hydrologic flow models developed by the U.S. Geological Survey for the same model area. The surface-water drainage system within this newly developed model actively simulates the extensive canal network using level-pool routing and active structures representing gates, weirs, culverts, and pumps. Steady-state and transient simulation results represented historical conditions (2013–17). The simulated historical groundwater levels and upstream stage and flow at the primary structures generally captured the behavior of the actual hydrologic system. Simulation results incorporating increased sea level and precipitation were used to evaluate the effects of these projected changes on the surface-water drainage system and wet season groundwater levels. Four future sea-level scenarios were simulated by modifying the historical inputs for both steady-state and the transient versions of the model to represent mean sea levels of 0.5, 2.0, 2.5, and 3.0 feet (ft) above the North American Vertical Datum of 1988. These mean sea levels correspond to sea-level rises of 1.05, 2.55, 3.05, and 3.55 ft, respectively, above the 2013–17 mean measured tidal stage. Additional simulations represented a 15-percent increase in rainfall rates using the transient model and a 15-percent increase in rainfall recharge using the steady-state model. The simulated results indicated that (1) the effects of increased sea level were more evident in the easternmost, coastal areas of the county where increases in groundwater levels are nearly equivalent to sea-level rise; (2) groundwater levels west of the coastal water-control structures only changed slightly in response to increased sea level for most scenarios; (3) when the control elevations of the gravity-controlled coastal water-control structures were surpassed by sea-level rise, the resulting increases in upstream stage in the connected primary canal resulted in increased groundwater levels that can propagate into the western parts of the county; (4) the historical west-to-east downward gradient in groundwater levels decreased with increased sea level, and groundwater levels were lower in central parts of the county than areas west and east for the higher sea-level scenarios; (5) simulated upstream stage for most of the primary coastal water-control structures increased with increased sea level, with the largest increases occurring at gravity-controlled structures having the lowest control elevations; (6) total flow through the primary structures increased as sea level increased because of additional groundwater leakage into the surface-water network; (7) the 3.0-ft mean sea-level rise scenario resulted in an increase of 37.10 square miles in area having a wet season average depth to groundwater of less than 2 ft, and an increase of 22.84 square miles in newly inundated areas compared to historical simulation results; and (8) a 15-percent increase in rainfall rate for the entire simulation period produced little increase in upstream stages at the primary structures and an increase in total flow through the primary structures proportional to the increase in rainfall.

Florida↗

USGS2025

Summary of selenium in the lower Gunnison River Basin, Colorado—Information and data gaps

The Cretaceous Mancos Shale is a geologic source of selenium in the lower Gunnison River Basin. Natural weathering processes and human activity mobilize selenium from the Mancos Shale and derived materials, and surface water, groundwater, and sediment all affect the transport of selenium from source areas to receiving streams and biota. Selenium accumulates through the aquatic food chain, and its toxic effects can result in invertebrate mortality and mortality, decreased reproduction, and deformities to fish and birds. The Bureau of Reclamation, in cooperation with the State of Colorado and Gunnison River Basin water users, is implementing a Selenium Management Program to reduce selenium concentrations in the lower Gunnison River Basin of Colorado. Goals of the Selenium Management Program are to (1) achieve compliance with the State of Colorado chronic aquatic-life standard for dissolved selenium (4.6 micrograms per liter) in the Gunnison River near Grand Junction, Colorado; (2) sufficiently improve water-quality conditions to assist in the recovery of endangered species in the Gunnison and Colorado Rivers by reducing selenium concentrations; and (3) support continued water uses in the basin. Many previous studies have contributed to the understanding of selenium in the environment; however, monitoring and research data gaps exist in the lower Gunnison River Basin. The purpose of this report is to summarize information regarding selenium in the lower Gunnison River Basin and describe strategies for scientific research and monitoring to potentially improve understanding of selenium sources; processes affecting the mobilization, transport, and fate of selenium; and the effects of selenium-mitigation projects in the lower Gunnison River Basin. Monitoring and research data gaps discussed in this report include geologic mapping and geochemical source characterization, long-term and ongoing monitoring of the surface-water and groundwater networks, developing and refining statistical models, characterizing selenium on suspended sediment, modeling selenium in the food web, evaluating best management practices, and more.

Colorado↗