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At least 415 records · Page 23Linked to original sources

High shrew diversity on Alaska's Seward Peninsula: Community assembly and environmental change

In September 2010, 6 species of shrews (genus: Sorex ) were collected at a single locality on the Seward Peninsula of Alaska. Such high sympatric diversity within a single mammalian genus is seldom realized. This phenomenon at high latitudes highlights complex Arctic community dynamics that reflect significant turnover through time as a consequence of environmental change. Each of these shrew species occupies a broad geographic distribution collectively spanning the entire Holarctic, although the study site lies within Eastern Beringia, near the periphery of all individual ranges. A review of published genetic evidence reflects a depauperate shrew community within ice-free Beringia through the last glaciation, and recent assembly of current diversity during the Holocene.

Alaska↗

Lakes and reservoirs—Guidelines for study design and sampling

The “National Field Manual for the Collection of Water-Quality Data” (NFM) is an online report with separately published chapters that provides the protocols and guidelines by which U.S. Geological Survey personnel obtain the data used to assess the quality of the Nation’s surface-water and groundwater resources. Chapter A10 reviews limnological principles, describes the characteristics that distinguish lakes from reservoirs, and provides guidance for developing temporal and spatial sampling strategies and data-collection approaches to be used in lake and reservoir environmental investigations. Within this chapter are references to other chapters of the NFM that provide more detailed guidelines related to specific topics and more detailed protocols for the quality assurance and assessment of the lake and reservoir data. Protocols and procedures to address and document the quality of lake and reservoir investigations are adapted from, or referenced to, the protocols and standard operating procedures contained in related chapters of this NFM. Before 2017, the U.S. Geological Survey (USGS) “National Field Manual for the Collection of Water-Quality Data” (NFM) chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0, 2018) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.er.usgs.gov . Comments, questions, and suggestions related to the NFM can be addressed to nfm-owq@usgs.gov .

Techniques and Methods↗

Web-based flood database for Colorado, water years 1867 through 2011

In order to provide a centralized repository of flood information for the State of Colorado, the U.S. Geological Survey, in cooperation with the Colorado Department of Transportation, created a Web-based geodatabase for flood information from water years 1867 through 2011 and data for paleofloods occurring in the past 5,000 to 10,000 years. The geodatabase was created using the Environmental Systems Research Institute ArcGIS JavaScript Application Programing Interface 3.2. The database can be accessed at http://cwscpublic2.cr.usgs.gov/projects/coflood/COFloodMap.html. Data on 6,767 flood events at 1,597 individual sites throughout Colorado were compiled to generate the flood database. The data sources of flood information are indirect discharge measurements that were stored in U.S. Geological Survey offices (water years 1867–2011), flood data from indirect discharge measurements referenced in U.S. Geological Survey reports (water years 1884–2011), paleoflood studies from six peer-reviewed journal articles (data on events occurring in the past 5,000 to 10,000 years), and the U.S. Geological Survey National Water Information System peak-discharge database (water years 1883–2010). A number of tests were performed on the flood database to ensure the quality of the data. The Web interface was programmed using the Environmental Systems Research Institute ArcGIS JavaScript Application Programing Interface 3.2, which allows for display, query, georeference, and export of the data in the flood database. The data fields in the flood database used to search and filter the database include hydrologic unit code, U.S. Geological Survey station number, site name, county, drainage area, elevation, data source, date of flood, peak discharge, and field method used to determine discharge. Additional data fields can be viewed and exported, but the data fields described above are the only ones that can be used for queries.

Colorado↗

The humpbacked species richness-curve: A contingent rule for community ecology

Functional relationships involving species richness may be unimodal, monotonically increasing, monotonically decreasing, bimodal, multimodal, U-shaped, or with no discernable pattern. The unimodal relationships are the most interesting because they suggest dynamic, nonequilibrium community processes. For that reason, they are also contentious. In this paper, we provide a wide-ranging review of the literature on unimodal (humpbacked) species richness-relationships. Though not as widespread as previously thought, unimodal patterns of species richness are often associated with disturbance, predation and herbivory, productivity, spatial heterogeneity, environmental gradients, time, and latitude. These unimodal patterns are contingent on organism and environment; we examine unimodal species richness-curves involving plants, invertebrates, vertebrates, plankton, and microbes in marine, lacustrine, and terrestrial habitats. A goal of future research is to understand the contingent patterns and the complex, interacting processes that generate them.

International Journal of Ecology↗

Water table in Long Island, New York, March 1971

The geologic framework and the hydrologic situation in Long Island are periodically reviewed by the U.S. Geological Survey as new knowledge is obtained from current investigations. This work is done through cooperative programs with Nassau and Suffolk County agencies and the New York State Department of Environmental Conservation. A unique opportunity to update many of the hydrogeologic maps occurred when the Geological Survey's Mineola, N.Y., office participated in the New England River Basins Commission's "Long Island Sound Study." This map, one of a series of open-file maps showing the updated information, was compiled from data obtained from G. E. Kimmel (written commun., July 1972) and Jensen and Soren (in press). Comparison of the March 1971 data with similar data for March 1970 (Kimmel, 1970) shows virtually no change in water levels on Long Island during the 12 month period, except for a slight decline in levels in central Suffolk County.

New York↗

Quality assurance/quality control procedure for New Jersey’s water-use data for the New Jersey Water Transfer Data System (NJWaTr)

This report is an instructional reference document that describes methods developed and used by the U.S. Geological Survey (USGS) New Jersey Water Science Center (NJWSC) to assure the quality and completeness of water-use data as provided by the New Jersey Department of Environmental Protection (NJDEP) Bureau of Water Allocation. These data are owned wholly by the State of New Jersey. The role of the USGS NJWSC is to assure the quality of these data by compiling, reviewing, and checking the datasets before uploading them into the New Jersey Water Transfer Data System (NJWaTr) database on an annual basis. The complete uploaded version of the NJWaTr database serves as the repository for New Jersey’s approved and published water-use data. The State of New Jersey maintains a public-facing version of the NJWaTr database (available online at https://www.nj.gov/dep/njgs/geodata/dgs10-3.htm ) that contains monthly water-use data at the municipality and 14-digit Hydrologic Unit Code subwatershed level. The protected version of the NJWaTr database that contains monthly site-specific water-use data is available from the NJDEP upon request.

New Jersey↗

Human-polar bear interactions

Human-wildlife interactions (HWI) are driven fundamentally by overlapping space and resources. As competition intensifies, the likelihood of interaction and conflict increases. In turn, conflict may impede conservation efforts by lowering social tolerance of wildlife, especially when human-wildlife conflict (HWC) poses a threat to human safety and economic well-being. Thus, mitigating conflict is one of the most consequential components of a wildlife management program, particularly for large carnivores. However, unlike other large carnivores, the causative factors and conservation consequences of interactions between humans and polar bears ( Ursus maritimus ) are poorly understood. Historically, mitigation of human-polar bear conflict has been a low management priority with the exception of a few locations where conflict had been a chronic concern. In part, this was because of low human densities in most of the Arctic and sea ice act as a physical barrier regulating the frequency of human-polar bear interactions. However, as the Arctic has warmed, anthropogenic activities have increased, and polar bears have become more reliant on land. As a result, mitigating interaction and conflict between humans and polar bears has become a growing concern. In this chapter, we explore the nexus of polar bear and human behavior and environmental change in driving the nature and intensity of human-polar bear interaction and conflict. We first provide an overview of behaviors that contribute to the occurrence of interactions and conflicts. We then review historical and contemporary drivers of interaction and conflict and examine how climate-mediated changes to Arctic marine and terrestrial environments are likely to influence distribution and types of future incidents. We close by proposing a conceptual framework that conservationists and managers can use to mitigate the likelihood of future human-polar bear conflict in a rapidly changing Arctic.

Book chapter↗

Review: “Jacob’s Zoo”— How using Jacob’s method for aquifer testing leads to more intuitive understanding of aquifer characteristics

The interpretation of aquifer responses to pumping tests is an important tool for assessing aquifer geometry and properties, which are critical in the assessment of water resources or in environmental remediation. However, the responses of aquifers, measured by time-drawdown relationships in monitoring wells, are nonunique solutions that are affected by many factors. Jacob’s Zoo is a collection of graphical interpretations that allows students and practitioners to develop an intuitive feel for how natural hydrogeological systems work, and develop a set of skills that provide a better understanding of aquifer properties far beyond interpretation of pumping tests. Jacob’s Zoo, based on the work of Jacob (1950), fosters a deeper understanding, although few practitioners realize the full utility of the method. Jacob CE (1950) Flow of groundwater, In: Rouse H (ed) Engineering Hydraulics, Wiley, New York. P 321–386.

Hydrogeology Journal↗

Coherent changes in relative C4 plant productivity and climate during the late Quaternary in the North American Great Plains

Evolution of the mixed and shortgrass prairie of the North American Great Plains is poorly understood because of limited proxies available for environmental interpretations. Buried soils in the Great Plains provide a solution to the problem because they are widespread both spatially and temporally with their organic reservoirs serving as a link to the plants than once grew on them. Through stable carbon isotopic analysis of soil organic carbon (??13C), the percent carbon from C4 plants (%C4) can be ascertained. Because C4 plants are primarily warm season grasses responding positively to summer temperature, their representation has the added advantage of serving as a climate indicator. To better understand grassland and climate dynamics in the Great Plains during the last 12 ka (ka=1000 radiocarbon years) we developed an isotopic standardization technique by: determining the difference in buried soil ??13C and modern soil ??13C expected for that latitude (????13C), and transferring the ????13C to ??%C4 (% C4) using mass balance calculations. Our analysis reveals two isotopic stages in the mixed and shortgrass prairie of the Great Plains based on trends in ??%C4. In response to orbital forcing mechanisms, ??%C4 was persistently below modern in the Great Plains between 12 and 6.7 ka (isotopic stage II) evidently because of the cooling effect of the Laurentide ice sheet and proglacial lakes in northern latitudes, and glacial meltwater pulses cooling the Gulf of Mexico and North Atlantic Ocean. The ??%C4 after 6.7 ka (isotopic stage I) increased to modern levels as conditioned by the outflow of warm, moist air from the Gulf of Mexico and dry incursions from the west that produced periodic drought. At the millennial-scale, time series analysis demonstrates that ??%C4 oscillated with 0.6 and 1.8 ka periodicities, possibly governed by variations in solar irradiance. Our buried soil isotopic record correlates well with other environmental proxy from the Great Plains and surrounding regions. ?? 2008 Elsevier Ltd.

Quaternary Science Reviews↗

Metal bioavailability models: Current status, lessons learned, considerations for regulatory use, and the path forward

Since the early 2000s, biotic ligand models and related constructs have been a dominant paradigm for risk assessment of aqueous metals in the environment. We critically review 1) the evidence for the mechanistic approach underlying metal bioavailability models; 2) considerations for the use and refinement of bioavailability-based toxicity models; 3) considerations for the incorporation of metal bioavailability models into environmental quality standards; and 4) some consensus recommendations for developing or applying metal bioavailability models. We note that models developed to date have been particularly challenged to accurately incorporate pH effects because they are unique with multiple possible mechanisms. As such, we doubt it is ever appropriate to lump algae/plant and animal bioavailability models; however, it is often reasonable to lump bioavailability models for animals, although aquatic insects may be an exception. Other recommendations include that data generated for model development should consider equilibrium conditions in exposure designs, including food items in combined waterborne–dietary matched chronic exposures. Some potentially important toxicity-modifying factors are currently not represented in bioavailability models and have received insufficient attention in toxicity testing. Temperature is probably of foremost importance; phosphate is likely important in plant and algae models. Acclimation may result in predictions that err on the side of protection. Striking a balance between comprehensive, mechanistically sound models and simplified approaches is a challenge. If empirical bioavailability tools such as multiple-linear regression models and look-up tables are employed in criteria, they should always be informed qualitatively and quantitatively by mechanistic models. If bioavailability models are to be used in environmental regulation, ongoing support and availability for use of the models in the public domain are essential.

Environmental Toxicology and Chemistry↗

Making ‘chemical cocktails’ – Evolution of urban geochemical processes across the periodic table of elements

Urbanization contributes to the formation of novel elemental combinations and signatures in terrestrial and aquatic watersheds, also known as ‘chemical cocktails.’ The composition of chemical cocktails evolves across space and time due to: (1) elevated concentrations from anthropogenic sources, (2) accelerated weathering and corrosion of the built environment, (3) increased drainage density and intensification of urban water conveyance systems, and (4) enhanced rates of geochemical transformations due to changes in temperature, ionic strength, pH, and redox potentials. Characterizing chemical cocktails and underlying geochemical processes is necessary for: (1) tracking pollution sources using complex chemical mixtures instead of individual elements or compounds; (2) developing new strategies for co-managing groups of contaminants; (3) identifying proxies for predicting transport of chemical mixtures using continuous sensor data; and (4) determining whether interactive effects of chemical cocktails produce ecosystem-scale impacts greater than the sum of individual chemical stressors. First, we discuss some unique urban geochemical processes which form chemical cocktails, such as urban soil formation, human-accelerated weathering, urban acidification-alkalinization, and Freshwater Salinization Syndrome. Second, we review and synthesize global patterns in concentrations of major ions, carbon and nutrients, and trace elements in urban streams across different world regions and make comparisons with reference conditions. In addition to our global analysis, we highlight examples from watersheds in the Baltimore-Washington DC area, USA, which show increased transport of major ions, trace metals, and nutrients across streams draining a well-defined land-use gradient. Urbanization increased the concentrations of multiple major and trace elements in streams draining human-dominated watersheds compared to reference conditions. Chemical cocktails of major and trace elements were formed over diurnal cycles coinciding with changes in streamflow, dissolved oxygen, pH, and other variables measured by high-frequency sensors. Some chemical cocktails of major and trace elements were also significantly related to specific conductance (p < 0.05), which can be measured by sensors. Concentrations of major and trace elements increased, peaked, or decreased longitudinally along streams as watershed urbanization increased, which is consistent with distinct shifts in chemical mixtures upstream and downstream of other major cities in the world. Our global analysis of urban streams shows that concentrations of multiple elements along the periodic table significantly increase when compared with reference conditions. Furthermore, similar biogeochemical patterns and processes can be grouped among distinct mixtures of elements of major ions, dissolved organic matter, nutrients, and trace elements as chemical cocktails. Chemical cocktails form in urban waters over diurnal cycles, decades, and throughout drainage basins. We conclude our global review and synthesis by proposing strategies for monitoring and managing chemical cocktails using source control, ecosystem restoration, and green infrastructure. We discuss future research directions applying the watershed chemical cocktail approach to diagnose and manage environmental problems. Ultimately, a chemical cocktail approach targeting sources, transport, and transformations of different and distinct elemental combinations is beneficial to more holistically monitor and manage the emerging impacts of chemical mixtures in the world's fresh waters.

Applied Geochemistry↗

The geology of Canadian potash: A critical mineral for feeding the world

Potash, potassium-bearing water-soluble salt, is the primary global economic source of potassium. Potash is recognized as a critical mineral in Canada as it is the largest source of potassium used in fertilizers. It is essential for global agricultural productivity and food security. Canada is the world’s largest potash exporter with vast deposits in the widely mined Prairie Evaporite of Saskatchewan, which formed in the epicontinental Elk Point Basin during the Middle Devonian. Potash is also found in the Windsor Group of Atlantic Canada where it formed in a series of tectonically active basins during the Mississippian that have undergone substantial post-depositional subsurface alteration and deformation. Potash deposits were mined in New Brunswick up until 2016. Both deposits are salt giants, recording times in the geologic record of extensive and long-lasting evaporite genesis under arid conditions in restricted seas. This paper reviews the geological and economic significance of Canadian potash, including (1) the genesis of each deposit, (2) diagenetic, erosional, and tectonic modification, and (3) exploration and mining in each basin. Underdeveloped regions, possible undiscovered resources, environmental considerations, and the importance of sustainable practices in light of climate change and socioeconomic risks are also addressed.

Facets↗

Literature review for candidate chemical control agents for nonnative crayfish

Nonnative crayfish are an immediate and pervasive threat to aquatic environments and their biodiversity. Crayfish control can be achieved by physical methods, water chemistry modification, biological methods, biocidal application, and application of crayfish physiology modifiers. The purpose of this report is to identify suitable candidates for potential control of nonnative crayfish through a comprehensive literature review. This review focuses on control methods, specifically on the available data to support registration of a crayfish pesticide. The literature search resulted in 28,058 documents, which were searched to determine if they contained information on physical, chemical, biological, and (or) biocidal approaches to control crayfish. Pesticides directly toxic to crayfish in this literature review include: pyrethroids (natural pyrethrins and synthetic), fipronil, mirex, antimycin-A, and rotenone. Some chemicals, such as diflubenzuron and emamectin benzoate, alter crayfish physiology resulting in a lower pesticide dose needed to control crayfish. Environmental damage, application rate, exposure duration, nontarget effects, environmental persistence, and registration data gaps were used as criteria to define which pesticides are potentially selective to crayfish, along with which have the greatest amount of data to support registration by the U.S. Environmental Protection Agency. Synthetic pyrethroids were identified as the most likely candidate to be developed into a crayfish pesticide. A type-2 synthetic pyrethroid, cyfluthrin, has the greatest potential for eradicating nonnative crayfish. Although other invertebrate species will be negatively affected at the concentrations required for crayfish control, compared with other pyrethroids and other potential control chemicals, cyfluthrin offers rapid ecosystem recovery due to being more selective, having fewer effects on native fish, and having a short aquatic persistence. Cyfluthrin also has few data gaps for U.S. Environmental Protection Agency registration purposes.

Open-File Report↗

Evidence of population-level impacts and resiliency for Gulf of Mexico shelf taxa following the Deepwater Horizon oil spill

The goal of this paper was to review the evidence of population-level impacts of the Deepwater Horizon Oil Spill (DWH) on Gulf of Mexico (GOM) continental shelf taxa, as well as evidence of resiliency following the DWH. There is considerable environmental and biological evidence that GOM shelf taxa were exposed to and suffered direct and indirect impacts of the DWH. Numerous assessments, from mesocosm studies to analysis of biopsied tissue or tissue samples from necropsied animals, revealed a constellation of physiological effects related to DWH impacts on GOM biota, some of which clearly or likely resulted in mortality. While the estimated concentrations of hydrocarbons in shelf waters and sediments were orders of magnitude lower than measured in inshore or deep GOM environments, the level of mortality observed or predicted was substantial for many shelf taxa. In some cases, such as for zooplankton, community shifts following the spill were ephemeral, likely reflecting high rates of population turnover and productivity. In other taxa, such as GOM reef fishes, impacts of the spill are confounded with other stressors, such as fishing mortality or the appearance and rapid population growth of invasive lionfish ( Pterois spp.). In yet others, such as cetaceans, modeling efforts to predict population-level effects of the DWH made conservative assumptions given the species’ protected status, which post-DWH population assessments either failed to detect or population increases were estimated. A persistent theme that emerged was the lack of precise population-level data or assessments prior to the DWH for many taxa, but even when data or assessments did exist, examining evidence of population resiliency was confounded by other stressors impacting GOM biota. Unless efforts are made to increase the resolution of the data or precision of population assessments, difficulties will likely remain in estimating the scale of population-level effects or resiliency in the case of future large-scale environmental catastrophes.

Gulf of Mexico↗

Wigeongrass ( Ruppia maritima ): a literature review

Wigeongrass (Ruppia maritima L.) is a submersed macrophyte of nearly cosmopolitan distribution and worldwide importance as a waterfowl food. Unfortunately, the plant no longer inhabits vast areas disturbed by human activities. Taxonomic status of the plant is uncertain, especially in North America. In mild climates, in habitats subject to environmental extremes, the plant behaves as an annual (vegetation perishes), or as a perennial in deeper, more stable habitats (some vegetative parts grow year round). Drupelets (seeds) provide a mechanism for wigeongrass to survive periods of drought and excessive water salinity. These sexual propagules can be washed ashore or carried by birds or fish for long distances.Wigeongrass mostly occurs in temporarily to permanently flooded mesohaline-hyperhaline estuarine wetlands, but it also occurs inland in fresh to hypersaline palustrine and lacustrine wetlands. Most populations inhabit warm, relatively unpolluted, and well lit waters <2.0 m deep where fetches and wave action are not great. The species is probably best adapted to stable water levels but can tolerate significant water level fluctuations, including periodic exposure in tidal areas. Robust growth occurs in areas of slow current. Wigeongrass is alone among the submersed North American angiosperms in tolerance to high salinity, but it is likely at a competitive disadvantage among specialist taxa in soft or acidic waters. The species grows in nearly all common bottom substrates, but growth is favored by aerobic and low H 2 S conditions. Turbidity frequently limits wigeongrass growth in waters overlying easily suspendible bottom substrates.Wigeongrass often occurs in monotypic stands, yet grows with many other submersed and emergent macrophytes. Dominance in certain wetlands sometimes alternates with dominance by other submersed macrophytes as salinities, seasonal temperature cycles, or other environmental factors change. The shading effect of metaphytic, planktonic, or epiphytic algae often reduces production.Wigeongrass and its detritus provide food and cover for a large invertebrate biota, although direct consumption of the living plants is minimal. Wigeongrass beds in coastal wetlands are heavily used by fish. The plant is recognized worldwide as an important food of migrant and wintering waterfowl, wading birds, and shorebirds. In subtropical climates, wintering waterfowl can quickly consume entire stands.Propagation and management of wigeongrass has occurred for nearly 60 years in the southern and eastern United States. During the seventies and eighties, sophisticated water level and salinity management techniques have been developed to encourage growth of the plant.Future research should concentrate on determining the means to reduce light-limiting turbidity in many wetland types; understanding the ways in which human activities on and near wetlands affect wigeongrass production; and developing reliable and predictable techniques to stimulate wigeongrass production by water level manipulations and other means in different environmental settings. Trophic interactions and the effects of biomanipulation of fish populations in managed wigeongrass habitat--now little understood--also require more study.

Fish and Wildlife Research↗

Status and trends of Caribbean coral reefs: 1970-2012

This it the 9th status report since the Global Coral Reef Monitoring Network (GCRMN) was founded in 1995 was the data arm of the International Coral Reef Initiative (ICRI) to document the ecological condition or corral reefs, strengthen monitoring efforts, and link existing organizations and people working on reefs worldwide. The US Government provided the initial funding to help set up a global network of coral reef workers and has continued to provide core support. Since then, the series of reports have aimed to present the current status of coral reefs of the world or particular regions, the major threats to reefs and their consequences, and any initiative undertaken under the auspices of ICRI or other bodies to arrest or reverse the decline of coral reefs. IUCN assumed responsibility for hosting the global coordination of the GCRMN in 2010 under the scientific direction of Jeremy Jackson with the following objectives: 1. Document quantitatively the global status and trends for corals, macroalgae, sea urchins, and fishes based on available data from individual scientists as well as the peer reviewed scientific literature, monitoring programs, and report. 2. Bring together regional experts in a series of workshops to involve them in data compilation, analysis, and synthesis. 3. Integrate coral reef status and trends with independent environmental, management, and socioeconomic data to better understand the primary factors responsible for coral reef decline, the possible synergies among factors that may further magnify their impacts, and how these stresses may be more effectively alleviated. Work with GCRMN partners to establish simple and practical standardized protocols for future monitoring and assessment. Disseminate information and results to help guide member state policy and actions. The overarching objective is to understand why some reefs are much healthier than others, to identify what kinds of actions have been particularly beneficial or harmful, and to vigorously communicate results in simple and straightforward terms to foster more effective conservation and management. This and subsequent reports will focus on separate biogeographic regions in a stepwise fashion and combine all of the results for a global synthesis in the coming years. We began in the wide Caribbean region because the historical data are so extensive and to refine methods of analysis before moving on to other regions. This report documents quantitative trends for Caribbean reef corals, macroalgae, sea urchins, and fishes based on data from 90 reef locations over the past 43 tears. This is the first report to combine all these disparate kinds of data in a single place to explore how the different major components of coral reef ecosystems interact on a broadly regional oceanic scale. We obtained data from more than 35,000 ecological surveys carried out by 78 principal investigators (PIs) and some 200 colleagues working in 34 countries, states, and territories throughout the wide Caribbean region. We conducted two workshops in Panama and Brisbane, Australia to bring together people who provided the data to assist in data quality control, analysis, and synthesis. The first workshop at the Smithsonian Tropical Research Institute (STRI) in the Republic of Panama 29 April to 5 May, 2012 included scientists from 18 countries and territories to verify and expand the database and to conduct exploratory analyses of status and trends. Preliminary results based on the Panama workshop were presented to the DC Marine Community and Smithsonian Institution Senate of Scientists in May 2012 and at the International Coral Reef Symposium (ICRS) and annual ICRI meeting in Cairns, Australia in July 2012. The second workshop in Brisbane, Australia in December 2012 brought together eight coral reef scientists for more detailed data analysis and organization of results for this report and subsequent publications. Subsequent presentations to solicit comments while the report was being finalized were made in 2013-2014 at the ICRI General meeting in Belize, the biennial meeting of the Association of Island Marine Laboratories in Jamaica, the Panamerican Coral Reef Congress in Merida, Mexico, the annual meeting of he Western Society of Naturalists, and numerous universities in Costa Rica, the USA and Europe. The main body of the report is in two sections. Part I provides an overview of overall status and trends and detailed analyses of the multiple factors responsible for the decline of reef corals throughout the entire wider Caribbean region. The editors are grateful to all the people who have so generously provided data and expertise, but we assume responsibility for the many statements, conclusions and recommendations and final wording of the text. Part II provides a more detailed analysis of the status and trends of coral reef ecosystems in the 32 countries, states, and territories for which we have data. The format includes maps indicating all locations sampled, a detailed table of data sources and sites surveyed, timelines of ecologically important evens, and relevant references. Each of these reports was compiled in consultation with local experts and all those who provided data and advice are listed as authors of each country report.

Report↗

A climate risk management screening and assessment review for Madagascar’s Country Development Cooperation Strategy

Madagascar, a country rich in natural capital and biodiversity but with high levels of poverty, food insecurity, and population growth, faces a number of development challenges, including obtaining sustained financial support from external sources and building internal capacity to address the poor environmental, health, and socio-economic conditions. Climate change poses an increasing threat to achieving development goals and is usually considered in development plans and project designs. However, there have been numerous challenges in the effective implementation of those plans, particularly in the sustained engagement of the communities to undertake adaptive actions but also due to insufficient scientific information to inform management decisions. To support the United States Agency for International Development (USAID) in the incorporation of Climate Risk Management into their Country Development Cooperation Strategy, we synthesized the best available information on current and future climate change impacts. Climate risks in Madagascar include increasing temperatures, reduced and more variable precipitation, more frequent droughts, more intense cyclones, and rising sea levels. We synthesized the observed and projected impacts of these climatic changes on water resources, agriculture, coastal and terrestrial ecosystems and ecosystem services, fisheries, and human health. Through interviews with stakeholders in Madagascar, we also discerned ongoing and potential climate adaptation and mitigation activities and information gaps (production, access, exploitation, processing, dissemination of information). The information gathered can be used by USAID, NGOs, and other organizations on how to better incorporate climate risks into development strategies and projects in Madagascar.

Project Summary↗

Outside the box: Working with wildlife in biocontainment

Research with captive wildlife in Animal Biosafety Level 2 (ABSL2) and 3 (ABSL3) facilities is becoming increasingly necessary as emerging and re-emerging diseases involving wildlife have increasing impacts on human, animal, and environmental health. Utilizing wildlife species in a research facility often requires outside the box thinking with specialized knowledge, practices, facilities, and equipment. The USGS National Wildlife Health Center (NWHC) houses an ABSL3 facility dedicated to understanding wildlife diseases and developing tools to mitigate their impacts on animal and human health. This review presents considerations for utilizing captive wildlife for infectious disease studies, including, husbandry, animal welfare, veterinary care, and biosafety. Examples are drawn from primary literature review and collective 40-year experience of the NWHC. Working with wildlife in ABSL2 and ABSL3 facilities differs from laboratory animals in that typical laboratory housing systems, husbandry practices, and biosafety practices are not designed for work with wildlife. This requires thoughtful adaptation of standard equipment and practices, invention of customized solutions and development of appropriate enrichment plans using the natural history of the species and the microbiological characteristics of introduced and native pathogens. Ultimately, this task requires critical risk assessment, understanding of the physical and psychological needs of diverse species, creativity, innovation, and flexibility. Finally, continual reassessment and improvement are imperative in this constantly changing specialty area of infectious disease and environmental hazard research.

ILAR Journal↗