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At least 415 records · Page 23Linked to original sources
USGS2020

Louisiana Coastal Zone sediment characterization; comparison of sediment grain sizes for samples collected in 2008 and 2015–2016 from the western Chenier plain to the Chandeleur Islands, Louisiana—Louisiana Barrier Island Comprehensive Monitoring (BICM) Program

Repeated sampling and grain-size analysis of surficial sediments along the sandy shorelines of Louisiana is necessary to characterize coastal-zone sediment properties and evaluate sediment transport patterns within the nearshore environments. In 2008, and again in 2015 and 2016, sediment grab samples were collected along the shorelines of the western Chenier plain, the Isles Dernieres (Raccoon, Whiskey, Trinity and East Islands), the Lafourche delta (Timbalier Islands, Caminada Headland, and Grand Isle), the modern delta (Grand Terre Islands from Chaland Headland to Sandy Point), and the Chandeleur Islands (from Curlew Island to Hewes Point). The samples were collected as part of the Louisiana Coastal Protection and Restoration Authority (CPRA) Barrier Island Comprehensive Monitoring (BICM) Program in collaboration with the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center (USGS–SPCMSC) and the University of New Orleans Pontchartrain Institute for Environmental Studies (UNO–PIES). Physical properties of the samples (sediment grain size and sorting) were measured and provided in data reports to CPRA. Additional samples collected by the USGS from around Breton Island in 2014 and 2015 supplemented the 2015–2016 BICM data to complete the coastwide dataset. This report compares the results of the 2008 and 2015–2016 sedimentologic analyses and documents changes in composition (percent sand) and mean sediment grain size between the two time periods. At most sample sites, differences in mean grain size varied by less than ±0.25 Φ. The largest changes occurred at sites located near tidal inlets or along rapidly eroding shorelines.

Louisiana↗
USGS2010

Policies and practices of beach monitoring in the Great Lakes, USA: a critical review

Beaches throughout the Great Lakes are monitored for fecal indicator bacteria (typically Escherichia coli) in order to protect the public from potential sewage contamination. Currently, there is no universal standard for sample collection and analysis or results interpretation. Monitoring policies are developed by individual beach management jurisdictions, and applications are highly variable across and within lakes, states, and provinces. Extensive research has demonstrated that sampling decisions for time, depth, number of replicates, frequency of sampling, and laboratory analysis all influence the results outcome, as well as calculations of the mean and interpretation of the results in policy decisions. Additional shortcomings to current monitoring approaches include appropriateness and reliability of currently used indicator bacteria and the overall goal of these monitoring programs. Current research is attempting to circumvent these complex issues by developing new tools and methods for beach monitoring. In this review, we highlight the variety of sampling routines used across the Great Lakes and the extensive body of research that challenges comparisons among beaches. We also assess the future of Great Lakes monitoring and the advantages and disadvantages of establishing standards that are evenly applied across all beaches.

Great Lakes↗
USGS2002

Possible sources of nitrate in ground water at swine licensed-managed feeding operations in Oklahoma, 2001

Samples collected and analyzed by the Oklahoma Department of Agriculture, Food, and Forestry from 1999 to 2001 determined that nitrate exceeded the U.S. Environmental Protection Agency maximum contaminant level for public drinking-water supplies of 10 milligrams per liter as nitrogen in 79 monitoring wells at 35 swine licensed-managed feeding operations (LMFO) in Oklahoma. The LMFOs are located in rural agricultural settings where long-term agriculture has potentially affected the ground-water quality in some areas. Land use prior to the construction of the LMFOs was assessed to evaluate the types of agricultural land use within a 500-meter radius of the sampled wells. Chemical and microbiological techniques were used to determine the possible sources of nitrate in water sampled from 10 wastewater lagoons and 79 wells. Samples were analyzed for dissolved major ions, dissolved trace elements, dissolved nutrients, nitrogen isotope ratios of nitrate and ammonia, wastewater organic compounds, and fecal coliform bacteria. Bacteria ribotyping analysis was done on selected samples to identify possible specific animal sources. A decision process was developed to identify the possible sources of nitrate. First, nitrogen isotope ratios were used to define sources as animal, mixed animal and fertilizer, or fertilizer. Second, wastewater organic compound detections, nitrogen-isotope ratios, fecal coliform bacteria detections, and ribotyping were used to refine the identification of possible sources as LFMO waste, fertilizer, or unidentified animal or mixtures of these sources. Additional evidence provided by ribotyping and wastewater organic compound data can, in some cases, specifically indicate the animal source. Detections of three or more wastewater organic compounds that are indicators of animal sources and detections of fecal coliform bacteria provided additional evidence of an animal source. LMFO waste was designated as a possible source of nitrate in water from 10 wells. The source of waste in water from five of those wells was determined through ribotyping, and the source of waste in water from the remaining five wells was determined by detections of three or more animal-waste compounds in the well samples. LMFO waste in the water from wells with unidentified animal source of nitrate does not indicate that LMFO waste was not the source, but indicated that multiple animal sources, including LMFO waste, may be the source of the nitrate.

Water-Resources Investigations Report↗
USGS2000

Design of a shallow ground-water network to monitor agricultural chemicals, Lake Wales Ridge, central Florida

Extensive agricultural land use and dynamic hydraulic connections between the land surface and ground-water resources render many of Florida's aquifers vulnerable to chemical contamination. In these areas, there is a need to monitor shallow ground water for agricultural chemicals to evaluate potential migration of the chemicals to the subsurface and to deeper aquifers, and to assess the effects of agricultural practices on ground-water quality. Historically, efforts to monitor water-table aquifers have been minimal compared with monitoring deeper aquifers used for municipal drinking-water supply. The Florida Department of Agriculture and Consumer Services has proposed the establishment of long-term, water-quality networks to monitor shallow ground water in agricultural areas of Florida. These networks will bridge the current information gap between local-scale short-duration field studies, which are required for pesticide licensing, and statewide monitoring of deeper ground-water resources. Laboratory (experimental) and short-term field evaluations of the transport of agricultural chemicals to the subsurface contain some degree of uncertainty due to widespread variations in environmental conditions. The proposed regional-scale shallow ground-water networks will serve as "early warning" networks to avoid contamination of ground-water resources. The objectives of these shallow ground-water networks are to provide information for early detection of pesticides and nitrate in the subsurface, and for evaluating temporal trends in concentrations in relation to changes in land use and agricultural practices. Information on trends is important to the U.S. Environmental Protection Agency, State agencies, and agricultural managers, and is an integral part of Florida's Pesticide Management Plan, which evaluates the effectiveness of implementing "best management practices" to minimize environmental impacts. Lake Wales Ridge in Polk and Highlands Counties has been identified by the Florida Department of Agriculture and Consumer Services as a pilot study area for implementing a regional shallow ground-water network. Information gained from designing the Lake Wales Ridge Network will be used to develop plans as similar networks are considered for other areas of Florida. Lake Wales Ridge is heavily utilized for citrus production, but the well-drained, clean sands underlying the region, coupled with a hydraulic connection with deeper karst formations, render the area extremely vulnerable to the transport and migration of agricultural chemicals within the subsurface. The network design for Lake Wales Ridge was developed on the basis of the objectives of monitoring, factors affecting aquifer vulnerability, probability (statistical) sampling theory, and specifications regarding well construction, sampling, and laboratory analysis. The network will provide estimates of regional pesticide and nitrate concentrations in targeted ground water, monitor for trends over time, and will provide baseline, regional-scale information. The areas targeted for sampling were citrus groves located on soils classified as vulnerable to leaching of agricultural chemicals, and ground water in close proximity to the water table. The duration of monitoring is planned to be long term. Chemicals targeted for monitoring include selected nutrients, trace elements, and pesticides used for citrus management. Standardization of field sampling and laboratory methods, and construction of a computerized data-base repository will be important for long-term utility of the data. The proposed network design consists of existing and newly drilled wells. Existing wells were evaluated as candidates for the network based on location and well-construction specifications for water-quality monitoring. Using probability selection techniques, new well locations were selected in areas that lacked adequate existing wells. Implementation of the network will occur in phases. Quarterly sampling of 13 Phase I wells commenced in April 1999. An additional 11 Phase II wells were added to the network in April 2000. Proposed locations have been identified for 8 Phase III wells. Future topics for study include a regional water-quality analysis, a network design evaluation, and consideration of local-scale studies needed to support regional monitoring efforts. An analysis of historical water-quality data for Lake Wales Ridge, including Phase I wells, is needed for the purpose of examining trends, providing a preliminary description of spatial and short-term variability in water quality, and evaluating the proposed network design for cost effectively meeting program objectives. Local-scale, process-oriented studies are needed to provide important information for evaluating regional water-quality data. Coordination between individuals conducting such local-scale studies and those interpreting regional sampling results will be considered as a component of the network design, and will require coordination between multiple agencies.

Florida↗
USGS2022

Identifying key stressors driving biological impairment in freshwater streams in the Chesapeake Bay watershed, USA

Biological communities in freshwater streams are often impaired by multiple stressors (e.g., flow or water quality) originating from anthropogenic activities such as urbanization, agriculture, or energy extraction. Restoration efforts in the Chesapeake Bay watershed, USA seek to improve biological conditions in 10% of freshwater tributaries and to protect the biological integrity of existing healthy watersheds. To achieve these goals, resource managers need to better understand which stressors are most likely driving biological impairment. Our study addressed this knowledge gap through two approaches: 1) reviewing and synthesizing published multi-stressor studies, and 2) examining 303(d) listed impairments linked to biological impairment as identified by jurisdiction regulatory agencies (the states within the watershed and the District of Columbia). Results identified geomorphology (i.e., physical habitat), salinity, and toxic contaminants as important for explaining variability in benthic community metrics in the literature review. Geomorphology (i.e., physical habitat and sediment), salinity, and nutrients were the most reported stressors in the jurisdictional impairment analysis. Salinity is likely a major stressor in urban and mining settings, whereas geomorphology was commonly reported in agricultural settings. Toxic contaminants, such as pesticides, were rarely measured; more research is needed to quantify the extent of their effects in the region. Flow alteration was also highlighted as an important urban stressor in the literature review but was rarely measured in the literature or reported by jurisdictions as a cause of impairment. These results can be used to prioritize stressor monitoring by managers, and to improve stressor identification methods for identifying causes of biological impairment.

Chesapeake Bay Watershed↗
USGS2013

Geology, water-quality, hydrology, and geomechanics of the Cuyama Valley groundwater basin, California, 2008--12

To assess the water resources of the Cuyama Valley groundwater basin in Santa Barbara County, California, a series of cooperative studies were undertaken by the U.S. Geological Survey and the Santa Barbara County Water Agency. Between 2008 and 2012, geologic, water-quality, hydrologic and geomechanical data were collected from selected sites throughout the Cuyama Valley groundwater basin. Geologic data were collected from three multiple-well groundwater monitoring sites and included lithologic descriptions of the drill cuttings, borehole geophysical logs, temperature logs, as well as bulk density and sonic velocity measurements of whole-core samples. Generalized lithologic characterization from the monitoring sites indicated the water-bearing units in the subsurface consist of unconsolidated to partly consolidated sand, gravel, silt, clay, and occasional cobbles within alluvial fan and stream deposits. Analysis of geophysical logs indicated alternating layers of finer- and coarser-grained material that range from less than 1 foot to more than 20 feet thick. On the basis of the geologic data collected, the principal water-bearing units beneath the monitoring-well sites were found to be composed of younger alluvium of Holocene age, older alluvium of Pleistocene age, and the Tertiary-Quaternary Morales Formation. At all three sites, the contact between the recent fill and younger alluvium is approximately 20 feet below land surface. Water-quality samples were collected from 12 monitoring wells, 27 domestic and supply wells, 2 springs, and 4 surface-water sites and were analyzed for a variety of constituents that differed by site, but, in general, included trace elements; nutrients; dissolved organic carbon; major and minor ions; silica; total dissolved solids; alkalinity; total arsenic and iron; arsenic, chromium, and iron species; and isotopic tracers, including the stable isotopes of hydrogen and oxygen, activities of tritium, and carbon-14 abundance. Of the 39 wells sampled, concentrations of total dissolved solids and sulfate from 38 and 37 well samples, respectively, were greater than the U.S. Environmental Protection Agency’s secondary maximum contaminant levels. Concentrations greater than the maximum contaminant levels for nitrate were observed in five wells and were observed for arsenic in four wells. Differences in the stable-isotopic values of hydrogen and oxygen among groundwater samples indicated that water does not move freely between different formations or between different zones within the Cuyama Valley. Variations in isotopic composition indicated that recharge is derived from several different sources. The age of the groundwater, expressed as time since recharge, was between 600 and 38,000 years before present. Detectable concentrations of tritium indicated that younger water, recharged since the early 1950s, is present in parts of the groundwater basin. Hydrologic data were collected from 12 monitoring wells, 56 domestic and supply wells, 3 surface-water sites, and 4 rainfall-gaging stations. Rainfall in the valley averaged about 8 inches annually, whereas the mountains to the south received between 12 and 19 inches. Stream discharge records showed seasonal variability in surface-water flows ranging from no-flow to over 1,500 cubic feet per second. During periods when inflow to the valley exceeds outflow, there is potential recharge from stream losses to the groundwater system Water-level records included manual quarterly depth-to-water measurements collected from 68 wells, time-series data collected from 20 of those wells, and historic water levels from 16 wells. Hydrographs of the manual measurements showed declining water levels in 16 wells, mostly in the South-Main zone, and rising water levels in 14 wells, mostly in the Southern Ventucopa Uplands. Time-series hydrographs showed daily, seasonal, and longer-term effects associated with local pumping. Water-level data from the multiple-well monitoring sites indicated seasonal fluctuations as great as 80 feet and water-level differences between aquifers as great as 40 feet during peak pumping season. Hydrographs from the multiple-well groundwater monitoring sites showed vertical hydraulic gradients were upward during the winter months and downward during the irrigation season. Historic hydrographs showed water-level declines in the Southern-Main, Western Basin, Caliente Northern-Main, and Southern Sierra Madre zone ranging from 1 to 7 feet per year. Hydrographs of wells in the Southern Ventucopa Uplands zone showed several years with marked increases in water levels that corresponded to increased precipitation in the Cuyama Valley. Investigation of hydraulic properties included hydraulic conductivity and transmissivity estimated from aquifer tests performed on 63 wells. Estimates of horizontal hydraulic conductivity ranged from about 1.5 to 28 feet per day and decreased with depth. The median estimated hydraulic conductivity for the older alluvium was about five times that estimated for the Morales Formation. Estimates of transmissivity ranged from 560 to 163,400 gallons per day per foot and decreased with depth. The median estimated transmissivity for the younger alluvium was about three times that estimated for the older alluvium. Geomechanical analysis included land-surface elevation changes at five continuously operating global positioning systems (GPS) and land-subsidence detection at five interferometric synthetic aperture radar (InSAR) reference points. Analysis of data collected from continuously operating GPS stations showed the mountains to the south and west moved upward about 1 millimeter (mm) annually, whereas the station in the center of the Southern-Main zone moved downward more than 7 mm annually, indicating subsidence. It is likely that this subsidence is inelastic (permanent) deformation and indicates reduced storage capacity in the aquifer sediments. Analysis of InSAR data showed local and regional changes that appeared to be dependent, in part, on the time span of the interferogram, seasonal variations in pumping, and tectonic uplift. Long-term InSAR time series showed a total maximum detected subsidence rate of approximately 12 mm per year at one location and approximately 8 mm per year at a second location, while short-term InSAR time series showed maximum subsidence of about 15 mm at one location and localized maximum uplift of about 10 mm at another location.

California↗
USGS2000

Quality-assurance design applied to an assessment of agricultural pesticides in ground water from carbonate bedrock aquifers in the Great Valley of eastern Pennsylvania

Assessments to determine whether agricultural pesticides are present in ground water are performed by the Commonwealth of Pennsylvania under the aquifer monitoring provisions of the State Pesticides and Ground Water Strategy. Pennsylvania's Department of Agriculture conducts the monitoring and collects samples; the Department of Environmental Protection (PaDEP) Laboratory analyzes the samples to measure pesticide concentration. To evaluate the quality of the measurements of pesticide concentration for a groundwater assessment, a quality-assurance design was developed and applied to a selected assessment area in Pennsylvania. This report describes the quality-assurance design, describes how and where the design was applied, describes procedures used to collect and analyze samples and to evaluate the results, and summarizes the quality assurance results along with the assessment results. The design was applied in an agricultural area of the Delaware River Basin in Berks, Lebanon, Lehigh, and Northampton Counties to evaluate the bias and variability in laboratory results for pesticides. The design—with random spatial and temporal components—included four data-quality objectives for bias and variability. The spatial design was primary and represented an area comprising 30 sampling cells. A quality-assurance sampling frequency of 20 percent of cells was selected to ensure a sample number of five or more for analysis. Quality-control samples included blanks, spikes, and replicates of laboratory water and spikes, replicates, and 2-lab splits of groundwater. Two analytical laboratories, the PaDEP Laboratory and a U.S. Geological Survey Laboratory, were part of the design. Bias and variability were evaluated by use of data collected from October 1997 through January 1998 for alachlor, atrazine, cyanazine, metolachlor, simazine, pendimethalin, metribuzin, and chlorpyrifos. Results of analyses of field blanks indicate that collection, processing, transport, and laboratory analysis procedures did not contaminate the samples; there were no false-positive results. Pesticides were detected in water when pesticides were spiked into (added to) samples. There were no false negatives for the eight pesticides in all spiked samples. Negative bias was characteristic of analytical results for the eight pesticides, and bias was generally in excess of 10 percent from the ‘true’ or expected concentration (34 of 39 analyses, or 87 percent of the ground-water results) for pesticide concentrations ranging from 0.31 to 0.51 mg/L (micrograms per liter). The magnitude of the negative bias for the eight pesticides, with the exception of cyanazine, would result in reported concentrations commonly 75-80 percent of the expected concentration in the water sample. The bias for cyanazine was negative and within 10 percent of the expected concentration. A comparison of spiked pesticide-concentration recoveries in laboratory water and ground water indicated no effect of the ground-water matrix, and matrix interference was not a source of the negative bias. Results for the laboratory-water spikes submitted in triplicate showed large variability for recoveries of atrazine, cyanazine, and pendimethalin. The relative standard deviation (RSD) was used as a measure of method variability over the course of the study for laboratory waters at a concentration of 0.4 mg/L. An RSD of about 11 percent (or about ?0.05 mg/L)characterizes the method results for alachlor, chlorpyrifos, metolachlor, metribuzin, and simazine. Atrazine and pendimethalin have RSD values of about 17 and 23 percent, respectively. Cyanazine showed the largest RSD at nearly 51 percent. The pesticides with low variability in laboratory-water spikes also had low variability in ground water. The assessment results showed that atrazinewas the most commonly detected pesticide in ground water in the assessment area. Atrazine was detected in water from 22 of the 28 wells sampled, and recovery results for atrazine were some of the worst (largest negative bias). Concentrations of the eight pesticides in ground water from wells were generally less than 0.3 µg/L. Only six individual measurements of the concentrations in water from six of the wells were at or above 0.3 µg/L, five for atrazine and one for metolachlor. There were eight additional detections of metolachlor and simazine at concentrations less than 0.1 µg/L. No well water contained more than one pesticide at concentra-tions at or above 0.3 µg/L. Evidence exists, how-ever, for a pattern of co-occurrence of metolachlor and simazine at low concentrations with higher concentrations of atrazine. Large variability in replicate samples and negative bias for pesticide recovery from spiked samples indicate the need to use data for pesticide recovery in the interpretation of measured pesti-cide concentrations in ground water. Data from samples spiked with known amounts of pesticides were a critical component of a quality-assurance design for the monitoring component of the Pesti-cides and Ground Water Strategy. Trigger concentrations, the concentrations that require action under the Pesticides and Ground Water Strategy, should be considered maximums for action. This consideration is needed because of the magnitude of negative bias.

Water-Resources Investigations Report↗
USGS2017

Water-quality, bed-sediment, and biological data (October 2014 through September 2015) and statistical summaries of data for streams in the Clark Fork Basin, Montana

Water, bed sediment, and biota were sampled in selected streams from Butte to near Missoula, Montana, as part of a monitoring program in the upper Clark Fork Basin of western Montana. The sampling program was led by the U.S. Geological Survey, in cooperation with the U.S. Environmental Protection Agency, to characterize aquatic resources in the Clark Fork Basin, with emphasis on trace elements associated with historic mining and smelting activities. Sampling sites were located on the Clark Fork and selected tributaries. Water samples were collected periodically at 20 sites from October 2014 through September 2015. Bed-sediment and biota samples were collected once at 13 sites during August 2015. This report presents the analytical results and quality-assurance data for water-quality, bed-sediment, and biota samples collected at sites from October 2014 through September 2015. Water-quality data include concentrations of selected major ions, trace elements, and suspended sediment. At 12 sites, samples for analysis of dissolved organic carbon and turbidity were collected. In addition, samples for analysis of nitrogen (nitrate plus nitrite) were collected at two sites. Daily values of mean suspended-sediment concentration and suspended-sediment discharge were determined for three sites. Seasonal daily values of turbidity were determined for four sites. Bed-sediment data include trace-element concentrations in the fine-grained fraction. Biological data include trace-element concentrations in whole-body tissue of aquatic benthic insects. Statistical summaries of water-quality, bed-sediment, and biological data for sites in the upper Clark Fork Basin are provided for the period of record.

Montana↗
USGS2020

Temporal and spatial changes in Myotis lucifugus acoustic activity before and after white-nose syndrome on Fort Drum Army Installation, New York, USA

Changes to bat distribution and habitat associations at the local to sub-landscape scale in the post white-nose syndrome (WNS) environment have received little attention to date despite being critical information for managers. To better understand the spatial nature of bat population declines, we modelled both activity patterns and occupancy from acoustic surveys for the Myotis lucifugus (little brown bat) on Fort Drum Military Installation in New York, USA over 15 summers (2003–2017) that span the pre-WNS, WNS-advent (2008) and post-WNS periods, using a set of generalized linear mixed models and geospatial analysis. Our best supported model indicated significant differences between years with significant declines in activity post-WNS. M. lucifugus activity was most closely associated with woody wetland habitats over the study period, however, the spatial patterns of high activity areas were variable over years, with the areal extent of these high activity areas decreasing post-WNS. Our best supported occupancy model varied by year. However, the null occupancy model [Ψ(.)] was either competing (within 2 ΔAIC units) or was the best supported model. Meaning that none of our environmental variables seemed to impact occupancy, and when they did, these differences were not significant. There was high disagreement between our relative activity models and predictions compared to our occupancy models, suggesting that geographic spatial scale and the resolution of the data impacts model outcome. Our results indicate that continued acoustic monitoring of bat species in the Northeast to assess ongoing temporal and spatial changes in habitat associations and to provide direction for future mist-netting studies should rely more on relative activity as the metric of choice rather than site occupancy.

New York↗
USGS2020

The Modern Geological Survey; a model for research, innovation, synthjesis: A USGS perspective

Geological Surveys have long filled the role of providing Earth system science data and knowledge. These functions are increasingly complicated by accelerating environmental and societal change. Here we describe the USGS response to these evolving conditions. Underpinning the USGS approach is the recognition that many of the issues facing the U.S. and the world involve the interaction among geologic, hydrologic, and biologic processes, and how these interactions in turn affect society. Therefore, a goal of USGS planning is fostering interdisciplinary science. This focus is occurring in part through implementation of the recommendations of strategic planning teams. The USGS has also put in place groups building a broad information technology infrastructure as well as identifying and disseminating new Earth science research tools. In addition, the USGS has established an analysis and synthesis center that brings together groups of scientists who address interdisciplinary Earth system science issues. The goal is for these building blocks to evolve towards a comprehensive USGS data and knowledge platform; EarthMAP (Earth Monitoring, Assessment, and Projection). We also recognize that the modern geological survey must be a member of a community of geological surveys contributing data to a global database of 3-dimensional biogeophysical observations and interpretations.

Book chapter↗
USGS2010

An integrated sampling and analysis approach for improved biodiversity monitoring

Successful biodiversity conservation requires high quality monitoring data and analyses to ensure scientifically defensible policy, legislation, and management. Although monitoring is a critical component in assessing population status and trends, many governmental and non-governmental organizations struggle to develop and implement effective sampling protocols and statistical analyses because of the magnitude and diversity of species in conservation concern. In this article we describe a practical and sophisticated data collection and analysis framework for developing a comprehensive wildlife monitoring program that includes multi-species inventory techniques and community-level hierarchical modeling. Compared to monitoring many species individually, the multi-species approach allows for improved estimates of individual species occurrences, including rare species, and an increased understanding of the aggregated response of a community to landscape and habitat heterogeneity. We demonstrate the benefits and practicality of this approach to address challenges associated with monitoring in the context of US state agencies that are legislatively required to monitor and protect species in greatest conservation need. We believe this approach will be useful to regional, national, and international organizations interested in assessing the status of both common and rare species.

Environmental Management↗
USGS2017

Disturbance automated reference toolset (DART): Assessing patterns in ecological recovery from energy development on the Colorado Plateau

A new disturbance automated reference toolset (DART) was developed to monitor human land surface impacts using soil-type and ecological context. DART identifies reference areas with similar soils, topography, and geology; and compares the disturbance condition to the reference area condition using a quantile-based approach based on a satellite vegetation index. DART was able to represent 26–55% of variation of relative differences in bare ground and 26–41% of variation in total foliar cover when comparing sites with nearby ecological reference areas using the Soil Adjusted Total Vegetation Index (SATVI). Assessment of ecological recovery at oil and gas pads on the Colorado Plateau with DART revealed that more than half of well-pads were below the 25th percentile of reference areas. Machine learning trend analysis of poorly recovering well-pads (quantile < 0.23) had out-of-bag error rates between 37 and 40% indicating moderate association with environmental and management variables hypothesized to influence recovery. Well-pads in grasslands (median quantile [MQ] = 13%), blackbrush ( Coleogyne ramosissima ) shrublands (MQ = 18%), arid canyon complexes (MQ = 18%), warmer areas with more summer-dominated precipitation, and state administered areas (MQ = 12%) had low recovery rates. Results showcase the usefulness of DART for assessing discrete surface land disturbances, and highlight the need for more targeted rehabilitation efforts at oil and gas well-pads in the arid southwest US.

Colorado Plateau↗
USGS2001

Aquatic vegetation and trophic condition of Cape Cod (Massachusetts, USA) kettle ponds

The species composition and relative abundance of aquatic macrophytes was evaluated in five Cape Cod, Massachusetts, freshwater kettle ponds, representing a range of trophic conditions from oligotrophic to eutrophic. At each pond, aquatic vegetation and environmental variables (slope, water depth, sediment bulk density, sediment grain size, sediment organic content and porewater inorganic nutrients) were measured along five transects extending perpendicular to the shoreline from the upland border into the pond. Based on a variety of multivariate methods, including Detrended Correspondence Analysis (DCA), an indirect gradient analysis technique, and Canonical Correspondence Analysis (CCA), a direct gradient approach, it was determined that the eutrophic Herring Pond was dominated by floating aquatic vegetation (Brasenia schreberi, Nymphoides cordata, Nymphaea odorata), and the algal stonewort, Nitella. Partial CCA suggested that high porewater PO4-P concentrations and fine-grained sediments strongly influenced the vegetation of this eutrophic pond. In contrast, vegetation of the oligotrophic Duck Pond was sparse, contained no floating aquatics, and was dominated by emergent plants. Low porewater nutrients, low sediment organic content, high water clarity and low pH (4.8) best defined the environmental characteristics of this oligotrophic pond. Gull Pond, with inorganic nitrogen-enriched sediments, also exhibited a flora quite different from the oligotrophic Duck Pond. The species composition and relative abundance of aquatic macrophytes provide good indicators of the trophic status of freshwater ponds and should be incorporated into long-term monitoring programs aimed at detecting responses to anthropogenically-derived nutrient loading.

Massachusetts↗
USGS2023

Identifying demographic and environmental drivers of population dynamics and viability in an endangered top predator using an integrated model

Knowledge about the demographic and environmental factors underlying population dynamics is fundamental to designing effective conservation measures to recover depleted wildlife populations. However, sparse monitoring data or persistent knowledge gaps about threats make it difficult to identify the drivers of population dynamics. In situations where small, declining, or depleted populations show continued evidence of decline for unknown reasons, integrated population models can make efficient use of available data to improve our understanding of demography, provide fundamental insights into factors that may be limiting recovery, and support conservation decisions. We used mark-resight and aerial survey data from 2004 to 2018 to build a Bayesian integrated population model for the Cook Inlet population of beluga whales ( Delphinapterus leucas ), which is listed as endangered under the U.S. Endangered Species Act. We examined the effects of prey availability and oceanographic conditions on beluga vital rates and conducted a population viability analysis to predict extinction risk across a range of hypothetical changes in beluga survival and reproduction. Our results indicated that while the survival of breeding females (0.97; 95% CI: 0.95–0.99) and young calves (0.92; 0.80–0.98) was relatively high, the survival of nonbreeders (0.94; 0.91–0.97) and fecundity (0.28; 0.22–0.36) may be depressed. Furthermore, our analysis indicates that the population will likely continue to decline, with a 17–32% probability of extinction in 150 years. Our model highlights the utility of integrated population modeling for maximizing the usefulness of available data and identifying factors contributing to the failure of protected populations to recover. This framework can be used to evaluate proposed conservation and recovery efforts for this and other endangered species.

Animal Conservation↗
USGS2020

Linking monitoring and data analysis to predictions and decisions for the range-wide eastern black rail status assessment

The US Fish and Wildlife Service has initiated a re-envisioned approach for providing decision makers with the best available science and synthesis of that information, called the Species Status Assessment (SSA), for endangered species decision making. The SSA report is a descriptive document that provides decision makers with an assessment of a species’ current status and predicted future status. These analyses support all manner of decisions under the US Endangered Species Act, such as listing, reclassification, recovery planning, etc. Novel scientific analysis and predictive modeling in SSAs could be an important part of rooting species conservation decisions in current data and cutting edge analytical and modeling techniques. Here we describe a novel analysis of available data to assess current condition of eastern black rail across its range in a dynamic occupancy analysis. We used the results of the analysis to develop a site occupancy projection model where the model parameters (initial occupancy, site persistence, colonization) were linked to environmental covariates, such as land management and land cover change (sea-level rise, development, etc.). We used the projection model to predict future conditions under multiple sea-level rise and habitat management scenarios. Occupancy probability and site colonization were low in all analysis units and site persistence was also low, suggesting low resiliency and redundancy currently. Extinction probability was high for all analysis units in all simulated scenarios except one with significant effort to preserve existing habitat, suggesting low future resiliency and redundancy. With results of these data analyses and predictive modeling, the US Fish and Wildlife Service concluded that protections of the Endangered Species Act were warranted for this subspecies.

Endangered Species Research↗
USGS2010

Surface-water quantity and quality, aquatic biology, stream geomorphology, and groundwater-flow simulation for National Guard Training Center at Fort Indiantown Gap, Pennsylvania, 2002-05

Base-line and long-term monitoring of water resources of the National Guard Training Center at Fort Indiantown Gap in south-central Pennsylvania began in 2002. Results of continuous monitoring of streamflow and turbidity and monthly and stormflow water-quality samples from two continuous-record long-term stream sites, periodic collection of water-quality samples from five miscellaneous stream sites, and annual collection of biological data from 2002 to 2005 at 27 sites are discussed. In addition, results from a stream-geomorphic analysis and classification and a regional groundwater-flow model are included. Streamflow at the facility was above normal for the 2003 through 2005 water years and extremely high-flow events occurred in 2003 and in 2004. Water-quality samples were analyzed for nutrients, sediments, metals, major ions, pesticides, volatile and semi-volatile organic compounds, and explosives. Results indicated no exceedances for any constituent (except iron) above the primary and secondary drinking-water standards or health-advisory levels set by the U.S. Environmental Protection Agency. Iron concentrations were naturally elevated in the groundwater within the watershed because of bedrock lithology. The majority of the constituents were at or below the method detection limit. Sediment loads were dominated by precipitation due to the remnants of Hurricane Ivan in September 2004. More than 60 percent of the sediment load measured during the entire study was transported past the streamgage in just 2 days during that event. Habitat and aquatic-invertebrate data were collected in the summers of 2002-05, and fish data were collected in 2004. Although 2002 was a drought year, 2003-05 were above-normal flow years. Results indicated a wide diversity in invertebrates, good numbers of taxa (distinct organisms), and on the basis of a combination of metrics, the majority of the 27 sites indicated no or slight impairment. Fish-metric data from 25 sites indicated results similar to the invertebrate data. Stream classification based on evolution of the stream channels indicates about 94 percent of the channels were considered to be in equilibrium (type B or C channels), neither aggrading nor eroding. A regional, uncalibrated groundwater-flow model indicated the surface-water and groundwater-flow divides coincided. Because of folding of rock layers, groundwater was under confined conditions and nearly all the water leaves the facility via the streams.

Scientific Investigations Report↗
USGS2024

Genetic analysis of harvest samples reveals population structure in a highly mobile generalist carnivore

Delineating wildlife population boundaries is important for effective population monitoring and management. The bobcat ( Lynx rufus ) is a highly mobile generalist carnivore that is ecologically and economically important. We sampled 1225 bobcats harvested in South Dakota, USA (2014–2019), of which 878 were retained to assess genetic diversity and infer population genetic structure using 17 microsatellite loci. We assigned individuals to genetic clusters ( K ) using spatial and nonspatial Bayesian clustering algorithms and quantified differentiation ( F ST and GST″ ) among clusters. We found support for population genetic structure at K = 2 and K = 4, with pairwise F ST and GST″ values indicating weak to moderate differentiation, respectively, among clusters. For K = 2, eastern and western clusters aligned closely with historical bobcat management units and were consistent with a longitudinal suture zone for bobcats previously identified in the Great Plains. We did not observe patterns of population genetic structure aligning with major rivers or highways. Genetic divergence observed at K = 4 aligned roughly with ecoregion breaks and may be associated with environmental gradients, but additional sampling with more precise locational data may be necessary to validate these patterns. Our findings reveal that cryptic population structure may occur in highly mobile and broadly distributed generalist carnivores, highlighting the importance of considering population structure when establishing population monitoring programs or harvest regulations. Our study further demonstrates that for elusive furbearers, harvest can provide an efficient, broad-scale sampling approach for genetic population assessments.

South Dakota↗
USGS2012

Using assemblage data in ecological indicators: A comparison and evaluation of commonly available statistical tools

Ecological indicators are science-based tools used to assess how human activities have impacted environmental resources. For monitoring and environmental assessment, existing species assemblage data can be used to make these comparisons through time or across sites. An impediment to using assemblage data, however, is that these data are complex and need to be simplified in an ecologically meaningful way. Because multivariate statistics are mathematical relationships, statistical groupings may not make ecological sense and will not have utility as indicators. Our goal was to define a process to select defensible and ecologically interpretable statistical simplifications of assemblage data in which researchers and managers can have confidence. For this, we chose a suite of statistical methods, compared the groupings that resulted from these analyses, identified convergence among groupings, then we interpreted the groupings using species and ecological guilds. When we tested this approach using a statewide stream fish dataset, not all statistical methods worked equally well. For our dataset, logistic regression (Log), detrended correspondence analysis (DCA), cluster analysis (CL), and non-metric multidimensional scaling (NMDS) provided consistent, simplified output. Specifically, the Log, DCA, CL-1, and NMDS-1 groupings were ≥60% similar to each other, overlapped with the fluvial-specialist ecological guild, and contained a common subset of species. Groupings based on number of species (e.g., Log, DCA, CL and NMDS) outperformed groupings based on abundance [e.g., principal components analysis (PCA) and Poisson regression]. Although the specific methods that worked on our test dataset have generality, here we are advocating a process (e.g., identifying convergent groupings with redundant species composition that are ecologically interpretable) rather than the automatic use of any single statistical tool. We summarize this process in step-by-step guidance for the future use of these commonly available ecological and statistical methods in preparing assemblage data for use in ecological indicators.

Ecological Indicators↗