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At least 415 records · Page 23Linked to original sources
USGS2023

A nitrifier-enriched microbial community contributes to the degradation of environmental DNA

Environmental DNA (eDNA) surveys are a promising alternative to traditional monitoring of invasive species, rare species, and biodiversity. Detecting organism-specific eDNA reduces the need to collect physical specimens for population estimates, and the high sensitivity of eDNA assays may improve detection of rare or cryptic species. However, correlating estimated concentrations of eDNA with species abundance can be difficult due to the many abiotic and biotic factors that influence eDNA persistence and degradation. Here, we assessed the impact of a nitrifier-enriched microbial (NEM) community on the persistence and degradation of Hypophthalmichthys molitrix (silver carp) milt eDNA using experimental aquatic mesocosms and a quantitative PCR approach. The NEM community was cultured from combined sediment and water samples collected from a golf course pond in Columbia, Missouri (USA), and experiments were conducted in the dark at 22°C. We found that the NEM community transformed organic nitrogen from silver carp milt to measurable amounts of nitrate, both in the presence and absence of ammonia nitrogen. Additionally, regardless of ammonia availability, milt eDNA followed a one-phase exponential decay pattern after an initial 24-h plateau in the presence of the NEM community. However, milt eDNA had a shorter half-life (12.5 h) in the absence of exogenous ammonia compared to when ammonia was present (15 h). In sterile mesocosms, eDNA was stable during the 72-h experiment. Together, these results suggest that the presence of microorganisms is necessary for short-term degradation of eDNA. Furthermore, nitrifying microbial communities, which are ubiquitous in most soil and water environments, could limit eDNA persistence in the environment. Understanding the contributions of environmental microbial communities will allow more confidence in sampling design and eDNA result interpretations for biodiversity management applications.

Environmental DNA↗
USGS2002

Annual primary production: Patterns and mechanisms of change in a nutrient-rich tidal ecosystem

Although nutrient supply often underlies long-term changes in aquatic primary production, other regulatory processes can be important. The Sacramento-San Joaquin River Delta, a complex of tidal waterways forming the landward portion of the San Francisco Estuary, has ample nutrient supplies, enabling us to examine alternate regulatory mechanisms over a 21-yr period. Delta-wide primary productivity was reconstructed from historical water quality data for 1975–1995. Annual primary production averaged 70 g C m −2 , but it varied by over a factor of five among years. At least four processes contributed to this variability: (1) invasion of the clam Potamocorbula amurensis led to a persistent decrease in phytoplankton biomass (chlorophyll a) after 1986; (2) a long-term decline in total suspended solids—probably at least partly because of upstream dam construction—increased water transparency and phytoplankton growth rate; (3) river inflow, reflecting climate variability, affected biomass through fluctuations in flushing and growth rates through fluctuations in total suspended solids; and (4) an additional pathway manifesting as a long-term decline in winter phytoplankton biomass has been identified, but its genesis is uncertain. Overall, the Delta lost 43% in annual primary production during the period. Given the evidence for food limitation of primary consumers, these findings provide a partial explanation for widespread Delta species declines over the past few decades. Turbid nutrient-rich systems such as the Delta may be inherently more variable than other tidal systems because certain compensatory processes are absent. Comparisons among systems, however, can be tenuous because conclusions about the magnitude and mechanisms of variability are dependent on length of data record.

California↗
USGS2009

Spatial and temporal spawning dynamics of native westslope cutthroat trout, Oncorhynchus clarkii lewisi, introduced rainbow trout, Oncorhynchus mykiss, and their hybrids

We used radiotelemetry to assess spatial and temporal spawning distributions of native westslope cutthroat trout (Oncorhynchus clarkii lewisi; WCT), introduced rainbow trout (Oncorhynchus mykiss; RBT), and their hybrids in the upper Flathead River system, Montana (USA) and British Columbia (Canada), from 2000 to 2007. Radio-tagged trout (N = 125) moved upriver towards spawning sites as flows increased during spring runoff and spawned in 29 tributaries. WCT migrated greater distances and spawned in headwater streams during peak flows and as flows declined, whereas RBT and RBT hybrids (backcrosses to RBT) spawned earlier during increasing flows and lower in the system. WCT hybrids (backcrosses to WCT) spawned intermediately in time and space to WCT and RBT and RBT hybrids. Both hybrid groups and RBT, however, spawned over time periods that produced temporal overlap with spawning WCT in most years. Our data indicate that hybridization is spreading via long-distance movements of individuals with high amounts of RBT admixture into WCT streams and stepping-stone invasion at small scales by later generation backcrosses. This study provides evidence that hybridization increases the likelihood of reproductive overlap in time and space, promoting extinction by introgression, and that the spread of hybridization is likely to continue if hybrid source populations are not reduced or eliminated.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2005

The Western Fisheries Research Center studies: threatened and endangered fishes

Within historical time, western native fish communities have faced increasing threats from habitat loss, invasive species, and pollution. It should come as no surprise that human development has greatly altered fish habitat in the west because of the importance of water for domestic, agricultural, and industrial uses, power generation, waste disposal, flood protection, and transportation. Fish that were adapted to natural cycles of river flow, lake levels, and water temperatures have been unable to adapt to the changes to these cycles caused by development, leading to the listing as threatened or endangered of 68 species of western native fishes. Rapid expansion of non-native fishes, aquatic plants, and invertebrates has increased competition for food and space while pollutants from past and present degrade our lakes, streams, and rivers.

Fact Sheet↗
USGS2021

Harvest as a tool to manage populations of undesirable or overabundant fish and wildlife

Harvest is a common management tool for fish and game species and can also be used for overabundant populations when stakeholders want to reduce populations reduced and still provide recreational opportunities. The authors propose a framework to determine if harvest can be used to control populations when overabundance is an issue, stakeholders support harvest, information is available to set harvest goals and evaluate impacts of harvest, and assessments are conducted to evaluate unintended consequences of harvest. The chapter provides two case examples of mid-continent light geese and blue catfish in the Chesapeake Bay watershed, for which overabundance was a problem and stakeholders had interest in harvest. Substantial data existed to set goals for light geese whereas blue catfish data were limited. For both light geese and blue catfish, desired outcomes have not yet been achieved, but hunting and fishing opportunities generated societal benefits despite existing barriers to increasing harvest. Harvest to control overabundant populations can be a useful tool, but consideration of stakeholder support, the data require to establish and monitor goals, and unintended consequences should be considered for an effective harvest plan. Harvest is a common management tool used for centuries to limit populations of game species (Caughley 1977, Redmond 1986). Managing populations using harvest regulations allow certain sizes, numbers, sex, and species to be harvested, and often include open or closed seasons. Regulated hunting opportunity and harvest are cornerstones of the North American Model of Wildlife Conservation, which developed gradually following unregulated harvest of wildlife populations that often were at risk of overharvest or extinction (Geist et al. 2001). Since then, many populations have recovered and expanded to the point where harvest regulations are now often used to limit or even reduce populations of some species. In general, harvest regulations have been well established as an effective way to control animal populations in many aquatic and terrestrial systems and are broadly accepted among the hunting and fishing public. For example, harvest regulations have been established or adapted to reduce or control populations of feral hogs (Sus scrofa; Hanson et al. 2009), white-tailed deer (Odocoileus virginianus; Simard et al. 2013) and cougar (Puma concolor; Cooley et al. 2009), overabundant small black bass (Micropertus spp.; Isermann and Paukert 2010), northern pike (Esox lucius; Pierce 2010) or non-native species (Arlinghaus et al. 2016b). Harvest has also been employed as a tool for controlling populations of invasive species. However, in many cases invasive species are so overabundant that a substantial commitment to harvest is necessary, which may exceed recreational harvest capacity and require commercial harvest or an active lethal control program by management agencies. Often removal of invasive species is challenging because the ultimate goal may be to eliminate the entire population, which may require impractical efforts. For example, controlling Asian carp in the Illinois River may require harvest rates of at least 70% (Tsehaye et al. 2013), whereas in the Great Smoky Mountains, an annual harvest rate of 40% would be necessary to decrease feral hog populations (Salinas et al. 2015). Many invasive species are known to negatively impact native species and ecosystems; thus, eradication is an ideal outcome. However, there may be opportunity to use harvest to control populations of native (or non-native) species that have some value yet are still overabundant. In this chapter, we explore the process of using harvest to control overabundant populations that have some recreational value, provide two examples to control overabundant populations using harvest, and describe the challenges and effectiveness associated with these efforts and some of the unintended effects of using harvest to control populations.

Book chapter↗
USGS2002

Dynamics of the Lake Michigan food web, 1970-2000

Herein, we document changes in the Lake Michigan food web between 1970 and 2000 and identify the factors responsible for these changes. Control of sea lamprey ( Petromyzon marinus ) and alewife ( Alosa pseudoharengus ) populations in Lake Michigan, beginning in the 1950s and 1960s, had profound effects on the food web. Recoveries of lake whitefish ( Coregonus clupeaformis ) and burbot ( Lota lota ) populations, as well as the buildup of salmonine populations, were attributable, at least in part, to sea lamprey control. Based on our analyses, predation by salmonines was primarily responsible for the reduction in alewife abundance during the 1970s and early 1980s. In turn, the decrease in alewife abundance likely contributed to recoveries of deepwater sculpin ( Myoxocephalus thompsoni ), yellow perch ( Perca flavescens ), and burbot populations during the 1970s and 1980s. Decrease in the abundance of all three dominant benthic macroinvertebrate groups, including Diporeia , oligochaetes, and sphaeriids, during the 1980s in nearshore waters ( 50 m deep) of Lake Michigan, was attributable to a decrease in primary production linked to a decline in phosphorus loadings. Continued decrease in Diporeia abundance during the 1990s was associated with the zebra mussel ( Dreissena polymorpha ) invasion, but specific mechanisms for zebra mussels affecting Diporeia abundance remain unidentified.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2014

Using scenario planning to evaluate the impacts of climate change on wildlife populations and communities in the Florida Everglades

It is uncertain how climate change will impact hydrologic drivers of wildlife population dynamics in freshwater wetlands of the Florida Everglades, or how to accommodate this uncertainty in restoration decisions. Using projections of climate scenarios for the year 2060, we evaluated how several possible futures could affect wildlife populations (wading birds, fish, alligators, native apple snails, amphibians, threatened and invasive species) across the Everglades landscape and inform planning already underway. We used data collected from prior research and monitoring to parameterize our wildlife population models. Hydrologic data were simulated using a spatially explicit, regional-scale model. Our scenario evaluations show that expected changes in temperature, precipitation, and sea level could significantly alter important ecological functions. All of our wildlife indicators were negatively affected by scenarios with less rainfall and more evapotranspiration. Under such scenarios, habitat suitability was substantially reduced for iconic animals such as wading birds and alligators. Conversely, the increased rainfall scenario benefited aquatic prey productivity and apex predators. Cascading impacts on non-native species is speculative, but increasing temperatures could increase the time between cold events that currently limit expansion and abundance of non-native fishes, amphibians, and reptiles with natural ranges in the tropics. This scenario planning framework underscored the benefits of proceeding with Everglades restoration plans that capture and clean more freshwater with the potential to mitigate rainfall loss and postpone impacts of sea level rise.

Florida↗
USGS2020

Evaluating the potential role of bioactive chemicals on the distribution of invasive Asian carp upstream and downstream from river mile 278 in the Illinois waterway

Two non-native carp species have invaded the Illinois Waterway and are a threat to Great Lakes ecosystems. Poor water quality in the upper Illinois Waterway, may be a factor contributing to the stalling of the carp population front near river mile 278. In 2015, the U.S. Geological Survey collected 4 sets of water samples from two sites upstream and 4 sites downstream from river mile 278, and one tributary. Each sample was analyzed for up to 649 unique parameters of which 287 were detected including 96 pesticides, 62 pharmaceuticals, 39 wastewater indicator compounds, 29 metals, 19 volatile organic compounds (VOCs), six disinfection by-products (DBPs), five hormones, and five carboxylic acids. Potential for bioactivity was estimated by comparing chemical concentrations to aquatic life or human health criteria and to in-vitro bioactivity screening results in the U.S EPA ToxCast™ database. The resulting hazard quotients and exposure-activity ratios (EARs) are toxicity indexes, that can be used to rank potential bioactivity of individual chemicals and chemical mixtures. This analysis indicates that several bioactive chemicals (BCs) including: carbendazim, 2,4-D, metolachlor, terbuthylazine, and acetochlor (pesticides); 1,4-dioxane (VOC); metformin, diphenhydramine, sulfamethoxazole, tramadol, fexofenadine, and the anti-depressants (pharmaceuticals); bisphenol A, 4-nonylphenol, galaxolide, 4-tert-octylphenol (wastewater indicator chemical); lead and boron (metals); and estrone (hormone) all occur in the upper Illinois Waterway at concentrations that produce elevated EARs values and may be adversely affecting carp reproduction and health. The clear differences in water quality upstream and downstream from river mile 278 with higher contaminant concentrations and potential bioactivity upstream could represent a barrier to carp range expansion.

Illinois↗
USGS2022

Connecticut and Landsat

Connecticut, the third-smallest State by land area, is the fourth most densely populated in the United States. Connecticut’s tightly packed cities serve as international hubs for the finance and insurance industries. These same urban enclaves host highly regarded institutions of higher learning, such as Yale, the University of Connecticut, and Quinnipiac and Wesleyan Universities. Yet Connecticut has surprisingly varied natural features. Its residents are never far from pristine environments that teem with wildlife and convey the sounds, scents, and scenery of the natural world. The Connecticut River, the longest in New England at 407 miles, cuts through the State’s center and drains into Long Island Sound, as do the Thames and Housatonic Rivers. Together, these rivers form an estuary spawning ground for hundreds of freshwater and saltwater aquatic species. North and east of the coastal lowlands that hug the estuary are the highlands of the Southern Taconic Range and the Berkshires. North and west of the coastline, smaller rivers and valleys weave through densely forested landscapes dotted with State parks and scenic lakes. Imagery from the U.S. Geological Survey Landsat archive, a trusted public resource with more than 50 years of worldwide Earth observations, provides a powerful tool for analyzing the interplay of human habitation and natural landscapes in Connecticut. Landsat data also offer land managers a critical information source for managing damage from invasive species and monitoring the local landscape effects of changing environmental conditions .

Connecticut↗
USGS2014

Lake Michigan offshore ecosystem structure and food web changes from 1987 to 2008

Ecosystems undergo dynamic changes owing to species invasions, fisheries management decisions, landscape modifications, and nutrient inputs. At Lake Michigan, new invaders (e.g., dreissenid mussels ( Dreissena spp.), spiny water flea ( Bythotrephes longimanus ), round goby ( Neogobius melanostomus )) have proliferated and altered energy transfer pathways, while nutrient concentrations and stocking rates to support fisheries have changed. We developed an ecosystem model to describe food web structure in 1987 and ran simulations through 2008 to evaluate changes in biomass of functional groups, predator consumption, and effects of recently invading species. Keystone functional groups from 1987 were identified as Mysis , burbot ( Lota lota ), phytoplankton, alewife ( Alosa pseudoharengus ), nonpredatory cladocerans, and Chinook salmon (Oncorhynchus tshawytscha ). Simulations predicted biomass reductions across all trophic levels and predicted biomasses fit observed trends for most functional groups. The effects of invasive species (e.g., dreissenid grazing) increased across simulation years, but were difficult to disentangle from other changes (e.g., declining offshore nutrient concentrations). In total, our model effectively represented recent changes to the Lake Michigan ecosystem and provides an ecosystem-based tool for exploring future resource management scenarios.

Lake Michigan↗
USGS2012

Data resources for the Wyoming Landscape Conservation Initiative (WLCI) Integrated Assessment (IA)

The data contained in this report were compiled, modified, and analyzed for the Wyoming Landscape Conservation Initiative (WLCI) Integrated Assessment (IA). The WLCI is a long-term science based effort to assess and enhance aquatic and terrestrial habitats at a landscape scale in southwest Wyoming while facilitating responsible energy development through local collaboration and partnerships. The IA is an integrated synthesis and analysis of WLCI resource values based on best available data and information collected from multiple agencies and organizations. It is a support tool for landscape-scale conservation planning and evaluation, and a data and analysis resource that can be used for addressing specific management questions. The IA analysis was conducted using a Geographic Information System in a raster (that is, a grid) environment using a cell size of 30 meters. To facilitate the interpretation of the data in a regional context, mean values were summarized and displayed at the subwatershed unit (WLCI subwatersheds were subset from the National Hydrography Dataset, Hydrologic Unit Code 12/Level 6). A dynamic mapping platform, accessed via the WLCI webpage at http://www.wlci.gov is used to display the mapped information, and to access underlying resource values that were combined to produce the final mapped results. The raster data used in the IA are provided here for use by interested parties to conduct additional analyses and can be accessed via the WLCI webpage. This series contains 74 spatial data sets: WLCI subwatersheds (vector) and 73 geotiffs (raster) that are segregated into the major categories of Multicriteria Index (including Resource Index and Condition), Change Agents, and Future Change. The Total Multicriteria Index is composed of the Aquatic Multicriteria Index and the Terrestrial Multicriteria Index. The Aquatic Multicriteria Index is composed of the Aquatic Resource Index and the Aquatic Condition. The Aquatic Resource Index is composed of the following components: Groundwater, Special Management Areas, and Priority Areas. The Aquatic Condition is composed of the following components: Focal Species, Species of Concern, Focal Ecosystems, and Proper Functioning Condition. The Terrestrial Multicriteria Index is composed of the Terrestrial Resource Index and the Terrestrial Condition. The Terrestrial Resource Index is composed of the following components: Special Management Areas, Agriculture, and Priority Areas. The Terrestrial Condition is composed of the following components: Focal Species, Big Game, Species of Concern, Rare Plants, and Focal Ecosystems. The Change Agents are composed the following components: Roads, Energy, Mines, and Urban. The Future Change is composed of the following components: Oil-Gas-Coal, Wind, Minerals, Climate-Temperature, Invasive Species, and Urban.

Wyoming↗
USGS2013

Identification of metrics to monitor salt marsh integrity on National Wildlife Refuges in relation to conservation and management objectives

Executive Summary Most salt marshes in the US have been degraded by human activities, and threats from physical alterations, surrounding land-use, species invasions, and global climate change persist. Salt marshes are unique and highly productive ecosystems with high intrinsic value to wildlife, and many National Wildlife Refuges (NWRs) have been established in coastal areas to protect large tracts of salt marsh and wetland-dependent species. Various management practices are employed routinely on coastal NWRs to restore and enhance marsh integrity and ensure ecosystem sustainability. Prioritizing NWR salt marshes for application of management actions and choosing among multiple management options requires scientifically-based methods for assessing marsh condition. Monitoring is integral to structured decision-making (SDM), a formal process for decomposing a decision into its essential elements. Within a natural resource context, SDM involves identifying management objectives, alternative management actions, and expected management outcomes. The core of SDM is a set of criteria for measuring system performance and evaluating management responses. Therefore, use of SDM to frame natural resource decisions leads to logical selection of monitoring attributes that are linked explicitly to management needs. We used SDM to guide selection of variables for monitoring the ecological integrity of salt marshes within the National Wildlife Refuge System (NWRS). Our objectives were to identify indicators of salt marsh integrity that are effective across large geographic regions, responsive to a wide range of threats, and feasible to implement within funding and staffing constraints of the NWRS. In April, 2008, we engaged interdisciplinary experts in a week-long rapid prototyping SDM workshop to define the essential elements of salt marsh management decisions on refuges throughout the northeastern, southwestern, and northwestern US, corresponding to respective Regions 5, 2, and 1 of the US Fish and Wildlife Service (FWS). Through this process we identified measurable attributes for monitoring salt marsh ecosystems that are integrated into conservation practice and target management objectives. The following salt marsh attributes were identified through the SDM process either for describing state condition to determine management needs or for evaluating the achievement of management objectives: historical condition and geomorphic setting; ditch density; surrounding land use; ratio of open water area to vegetation area; rate of pesticide application; environmental contaminant concentration; change in marsh surface elevation relative to sea level rise; tidal range and groundwater level; surface topography; salinity; and species composition and abundance of vegetation, invasive species, invertebrates, nekton, and breeding and wintering birds. The identified attributes were too broadly defined to serve as operational monitoring variables. Therefore, we tested specific metrics for quantifying most of these attributes in summers of 2008 and 2009. The first four attributes in the above list can be characterized by office-based analysis of existing GIS data layers. The remaining attributes require field-based methods for assessment. We were forced to exclude a small number of attributes from field tests due to inconsistent data (pesticide application rate, environmental contaminant concentrations) or requirements that exceeded the scope of this project (change in marsh surface elevation; surface topography; benthic invertebrates; wintering birds). We evaluated potential metrics for evaluating all remaining field attributes. In partnership with NWRS biologists, we tested rapid versus intensive metrics for monitoring field attributes (tidal range and groundwater level; marsh surface elevation; salinity; and species composition and abundance of vegetation, invasive species, nekton, and breeding birds) at coastal refuges throughout FWS Region 5. Seven refuges participated in metric testing in 2008: Rachel Carson (ME), Parker River (MA), Wertheim (NY), E. B. Forsythe (NJ), Bombay Hook (DE), Prime Hook (DE), and Eastern Shore of Virginia Complex (VA). These seven and two additional refuges participated in metric testing in 2009: Rhode Island Complex (RI) and Stewart B. McKinney (CT). We based all field metrics on existing protocols for salt marsh assessment. Sampling locations were determined randomly within delineated marsh study units (MSUs) at each refuge. Detailed field methods are provided in appendices to this report. Measurements for individual metrics were averaged across samples within MSUs during each year of sampling. Each year, correlation or regression analysis was conducted on average measurements across MSUs within each attribute set to identify redundant metrics. Statistical redundancy between a pair of metrics within an attribute set (i.e., correlation or regression slopes with p-values < 0.05) was considered justification for eliminating one of the pair from the regional set of monitoring metrics. Decisions regarding metric elimination versus retention were based on feasibility of monitoring, considering such factors as sampling time, resources required, and potential for regional standardization in implementation. The result of these tests is a reduced suite of monitoring metrics that targets NWRS management decisions and is practicable for implementing on a regional scale. Based on these tests, we recommend the following list of metrics for monitoring integrity of NWRS salt marshes (marsh attribute category is in parentheses): (historical condition and geomorphic setting) position of marsh in the landscape, marsh shape, degree of fill and/or fragmentation, degree of tidal flushing, amount of aquatic edge; (ditch density) ranking of ditch density from none to severe; (surrounding land use) relative proportion of agricultural land in a 150-m buffer around the marsh, relative proportion of natural land in a 150-m buffer around the marsh, relative proportion of natural land in a 1-km buffer around the marsh; (ratio of open water area to vegetation area) ratio of open water to emergent herbaceous wetlands within the marsh; (marsh surface elevation) elevation referenced to NAVD88 in a representative area of the marsh; (tidal range and groundwater level) percent of time the marsh surface is flooded during deployment of a continuous water-level monitor at a representative marsh location, mean depth of surface flooding as measured by a continuous water-level monitor at a representative location; (salinity) salinity measured in surface water; (vegetation community) vegetation species richness using the point-intercept method in 100-m diameter survey plots, percent cover of various marsh community types within 100-m diameter survey plots; (invasive species abundance) percent cover of invasive plant species measured using the point-intercept method in 100-m diameter survey plots; (nekton community) nekton density, nekton species richness, length of Fundulus heteroclitus ; (breeding bird community) abundance of Willets counted per point during standard call-broadcast surveys, summed abundance of tidal marsh obligate species (Clapper Rail, Willet, Saltmarsh Sparrow, Seaside Sparrow) counted per point during standard call-broadcast surveys. Metrics describing the historical condition, geomorphic setting, and broad landscape features can be assessed using existing GIS databases. Our results support use of rapid methods to assess the majority of field metrics; only those used to describe the nekton community must be measured using intensive methods (throw traps or ditch nets, dependant on habitat configuration). Implementation of these metrics for quantitative assessment of NWRS salt marsh integrity in FWS Region 5 requires developing sampling designs for each refuge. Additionally, it is important to determine how the monitoring information will be used within a management context. SDM should be used to complete the analysis of salt marsh management decisions. The next steps would involve 1) prioritizing and weighting the management objectives; 2) predicting responses to individual management actions in terms of objectives and metrics; 3) using multiattribute utility theory to convert all measurable attributes to a common utility scale; 4) determining the total management benefit of each action by summing utilities across objectives; and 5) maximizing the total management benefits within cost constraints for each refuge. This process would allow the optimum management decisions for NWRS salt marshes to be selected and implemented based directly on monitoring data and current understanding of marsh responses to management actions. Monitoring the outcome of management actions would then allow new monitoring data to be incorporated into subsequent decisions.

Connecticut, Delaware, Maine, Massachusetts, New J↗
USGS2002

Induction of skin ulcers in Atlantic menhaden by injection and aqueous exposure to the zoospores of Aphanomyces invadans

The infectivity and role of Aphanomyces invadans in the etiology of skin ulcers in Atlantic menhaden Brevoortia tyrannus were investigated with two laboratory challenges. In the first experiment, Atlantic menhaden received subcutaneous injections with secondary zoospores from one of three cultures of Aphanomyces : WIC (an endemic isolate of A. invadans in Atlantic menhaden from the Wicomico River, Maryland), PA7 (an isolate of A. invadans from striped snakehead Channa striata (also known as chevron snakehead), infected with epizootic ulcerative syndrome from Thailand), and ATCC-62427 (an isolate from Atlantic menhaden from North Carolina). Fish were injected with 1.9 × 10 2 (WIC-low), 1.9 × 10 3 (WIC-high), 5.2 × 10 2 (PA7), or 6.0 × 10 2 (ATCC-62427) zoospores and held in static water at 23.5°C (6‰ salinity) for 21 d. Both low and high doses of WIC caused incipient, granulomatous lesions after 5 d. Fish injected with the high-dose WIC died within 7 d. All fish injected with the low-dose WIC were dead after 10 d. Fish injected with zoospores of PA7 developed lesions after 9 d. Fish injected with the ATCC-62427 isolate or those that received subcutaneous injections of sterile water (controls) did not develop lesions. In the second experiment, fish were bath-exposed with zoospores of the WIC isolate after various trauma-inducing treatments. These treatments consisted of handling fish with a net (net stress, exposed for 2 h to either 70 or 700 zoospores/mL), physically removing a few scales (trauma, exposed for 1 h to 700 zoospores/mL), or acclimating fish with less handling (acclimated, untraumatized, exposed for 5.5 h to 110 zoospores/mL). Unexposed fish served as controls. Mortality ranged from 94% to 100% for net-handled and traumatized fish, with the prevalence of ulcerous lesions ranging from 70% to 79% in net-handled fish. However, mortality was 24% for the “untraumatized” fish and the prevalence of lesions was 32%. Fish injected with or exposed to bath challenges of zoospores developed lesions that were grossly and histologically identical to those observed in naturally infected Atlantic menhaden from several estuaries and rivers along the mid-Atlantic coast of the USA. The deeply penetrating ulcers were characterized by dermatitis, myofibrillar degeneration, and deep, necrotizing granulomatous myositis. Experimentally induced lesions, however, exhibited invasiveness, often involving the kidney. Injected or bath-exposed fish developed incipient granulomas after 5 d, which progressed to overt lesions over 7–9 d. We have here demonstrated that ulcerative skin lesions can be experimentally induced in Atlantic menhaden after exposure to oomycete zoospores of an endemic strain of A. invadans .

Journal of Aquatic Animal Health↗
USGS2013

Wyoming Basin Rapid Ecoregional Assessment

The overall goal of the Wyoming Basin Rapid Ecoregional Assessment (REA) is to provide information that supports regional planning and analysis for the management of ecological resources. The REA provides an assessment of baseline ecological conditions, an evaluation of current risks from drivers of ecosystem change (including energy development, fire, and invasive species), and a predictive capacity for evaluating future risks (including climate change). Additionally, the REA may be used for identifying priority areas for conservation or restoration and for assessing cumulative effects of multiple land uses. The Wyoming Basin REA will address Management Questions developed by the Bureau of Land Management and other agency partners for 8 major biomes and 19 species or species assemblages. The maps developed for addressing Management Questions will be integrated into overall maps of landscape-level ecological values and risks. The maps can be used to address the goals of the REA at a number of levels: for individual species, species assemblages, aquatic and terrestrial systems, and for the entire ecoregion. This allows flexibility in how the products of the REA are compiled to inform planning and management actions across a broad range of spatial scales.

Colorado;Idaho;Montana;Utah;Wyoming↗
USGS2021

Climate change effects on North American fish and fisheries to inform adaptation strategies

Climate change is a global persistent threat to fish and fish habitats throughout North America. Climate-induced modification of environmental regimes, including changes in streamflow, water temperature, salinity, storm surges, and habitat connectivity can change fish physiology, disrupt spawning cues, cause fish extinctions and invasions, and alter fish community structure. Reducing greenhouse emissions remains the primary mechanism to slow the pace of climate change, but local and regional management agencies and stakeholders have developed an arsenal of adaptation strategies to help partially mitigate the effects of climate change on fish. We summarize common stressors posed by climate change in North America, including (1) increased water temperature, (2) changes in precipitation, (3) sea level rise, and (4) ocean acidification, and present potential adaptation strategies that fishery professionals may apply to help vulnerable fish and fisheries cope with a changing climate. Although our adaptation strategies are primarily from North America, they have broader geographic applicability to fish and aquatic biota in other jurisdictions. These strategies provide opportunities for managers to mitigate the effects of climate change on fish and fish habitat while needed global policies to reduce greenhouse gas emissions emerge, which may offer more lasting solutions.

Fisheries Magazine↗
USGS2005

Multiple hypotheses testing of fish incidence patterns in an urbanized ecosystem

Ecological and evolutionary theories have focused traditionally on natural processes with little attempt to incorporate anthropogenic influences despite the fact that humans are such an integral part of virtually all ecosystems. A series of alternate models that incorporated anthropogenic factors and traditional ecological mechanisms of invasion to account for fish incidence patterns in urban lakes was tested. The models were based on fish biology, human intervention, and habitat characteristics. However, the only models to account for empirical patterns were those that included fish invasiveness, which incorporated species-specific information about overall tolerance and fecundity. This suggests that species-specific characteristics are more important in general distributional patterns than human-mediated dispersal. Better information of illegal stocking activities is needed to improve human-mediated models, and more insight into basic life history of ubiquitous species is needed to truly understand underlying mechanisms of biotic homogenization. ?? Springer 2005.

Aquatic Ecology↗
USGS2017

Incorporating food web dynamics into ecological restoration: A modeling approach for river ecosystems

Restoration is frequently aimed at the recovery of target species, but also influences the larger food web in which these species participate. Effects of restoration on this broader network of organisms can influence target species both directly and indirectly via changes in energy flow through food webs. To help incorporate these complexities into river restoration planning we constructed a model that links river food web dynamics to in-stream physical habitat and riparian vegetation conditions. We present an application of the model to the Methow River, Washington (USA), a location of on-going restoration aimed at recovering salmon. Three restoration strategies were simulated: riparian vegetation restoration, nutrient augmentation via salmon carcass addition, and side-channel reconnection. We also added populations of nonnative aquatic snails and fish to the modeled food web to explore how changes in food web structure mediate responses to restoration. Simulations suggest that side-channel reconnection may be a better strategy than carcass addition and vegetation planting for improving conditions for salmon in this river segment. However, modeled responses were strongly sensitive to changes in the structure of the food web. The addition of nonnative snails and fish modified pathways of energy through the food web, which negated restoration improvements. This finding illustrates that forecasting responses to restoration may require accounting for the structure of food webs, and that changes in this structure—as might be expected with the spread of invasive species—could compromise restoration outcomes. Unlike habitat-based approaches to restoration assessment that focus on the direct effects of physical habitat conditions on single species of interest, our approach dynamically links the success of target organisms to the success of competitors, predators, and prey. By elucidating the direct and indirect pathways by which restoration affects target species, dynamic food web models can improve restoration planning by fostering a deeper understanding of system connectedness and dynamics.

Washington↗
USGS2018

Great Lakes coastal fish habitat classification and assessment

Basin-scale assessment of fish habitat in Great Lakes coastal ecosystems would increase our ability to prioritize fish habitat management and restoration actions. As a first step in this direction, we identified key habitat factors associated with highest probability of occurrence for several societally and ecologically important coastal fish species as well as community metrics, using data from the Great Lakes Aquatic Habitat Framework (GLAHF), Great Lakes Environmental Indicators (GLEI) and Coastal Wetland Monitoring Program (CWMP). Secondly, we assessed whether species-specific habitat was threatened by watershed-level anthropogenic stressors. In the southern Great Lakes, key habitat factors for determining presence/absence of several species of coastal fish were chlorophyll concentrations, turbidity, and wave height, whereas in the northern ecoprovince temperature was the major habitat driver for most of the species modeled. Habitat factors best explaining fish richness and diversity were bottom slope and chlorophyll a . These models could likely be further improved with addition of high-resolution submerged macrophytecomplexity data which are currently unavailable at the basin-wide scale. Proportion of invasive species was correlated primarily with increasing maximum observed inorganic turbidity and chlorophyll a . We also demonstrate that preferred habitat for several coastal species and high-diversity areas overlap with areas of high watershed stress. Great Lakes coastal wetland fish are a large contributor to ecosystem services as well as commercial and recreational fishery harvest, and scalable basin-wide habitat models developed in this study may be useful for informing management actions targeting specific species or overall coastal fish biodiversity.

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