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At least 397 records · Page 22Linked to original sources
USGS1998

Thermally induced chronic developmental stress in coho salmon: Integrating measures of mortality, early growth and fluctuating asymmetry

Developmental stability, or homeostasis, facilitates the production of consistent phenotypes by buffering against stress. Fluctuating asymmetry is produced by developmental instability and is manifested as small random departures from bilateral symmetry. Increased fluctuating asymmetry is thought to parallel compromised fitness, in part, because stress promotes energy dissipation. Compensatory energy expenditures within the organism are required to complete development, thus promoting instability through reductions in homeostasis. Increased heterozygosity may enhance developmental stability by reducing energy dissipation from stress through increased metabolic efficiency, possibly by providing greater flexibility in metabolic pathways. Traditionally, fluctuating asymmetry has been used as a bioindicator of chronic stress, provided that selective mortality of less fit individuals did not reduce stress-mediated increases in fluctuating asymmetry to background levels produced by natural developmental error, or create data inconsistencies such as higher asymmetry in groups exposed to lower stress. Unfortunately, absence of selective mortality and its effects, while often assumed, can be difficult to substantiate. We integrated measures of early growth, mortality, fluctuating asymmetry (mandibular pores, pectoral finrays, pelvic finrays, and gillrakers on the upper and lower arms of the first branchial arch) and directional asymmetry (branchiostegal rays) to assess chronic thermal stress (fluctuating temperatures as opposed to ambient temperatures) in developing eggs from two different coho salmon (Oncorhynchus kisutch) stocks and their reciprocal hybrids. Hybridization provided insight on the capacity of heterozygosity to reduce stress during development. Although egg losses were consistently higher in crosses exposed to fluctuating temperatures, egg mortality was predominantly a function of maternal stock of origin. Post-hatch losses were higher in crosses exposed to ambient temperatures than in crosses exposed to fluctuating temperatures during embryogenesis. Observed patterns of early growth revealed no heterosis, but instead reflected maternal effects, with some crosses slowing growth and yolk utilization when exposed to fluctuating temperatures. Analyses of fluctuating asymmetry also showed no effects from heterosis. While analyses of composite asymmetry scores and branchiostegal rays were inconclusive, analyses of individual characters showed significantly higher fluctuating asymmetry in pelvic finray counts and a marginal change in the numbers of fish asymmetric for this character in crosses exposed to chronic thermal stress. In contrast, the fluctuating asymmetry in lower gillraker counts was significantly higher in crosses exposed to ambient temperatures and there were significantly more fish asymmetric for this character. Data on mortalities and fluctuating asymmetry indicate pelvic finray development was thermally stressed, while the heightened fluctuating asymmetry in lower gillraker counts under ambient temperatures was due to a greater frequency of less fit fish that had not been culled by thermal stress. Changes in early growth patterns in response to developmental stress yielded no parallel responses in meristic characters. We conclude that chronic thermal stress produced both selectively lethal and sublethal effects that directly shaped fluctuating asymmetry and fitness profiles in these crosses. Implicit in this conclusion is that developmental instability analyses can detect more than just chronic sublethal stress, thus providing substantial credence for using instability studies as proactive bioassessment methodologies.

Oikos↗
USGS2007

Development and evaluation of a gas chromatographic method for the determination of triazine herbicides in natural water samples

A multi-residue method is described for the determination o triazine herbicides in natural water samples. The technique uses solvent extraction followed by gas chromatographic separation and detection employing nitrogen-selective devices. Seven compounds can be determined simultaneously at a nominal detection limit of 0.1 μg/L in a 1-litre sample. Three different natural water samples were used for error analysis via evaluation of recovery efficiencies and estimation of overall method precision. As an alternative to liquid-liquid partition (solvent extraction) for removal of compounds of interest from water, solid-phase extraction (SPE) techniques employing chromatographic grade silicas with chemically modified surfaces have been examined. SPE is found to provide rapid and efficient concentration with quantitative recovery of some triazine herbicides from natural water samples. Concentration factors of 500 to 1000 times are obtained readily by the SPE technique.

International Journal of Environmental Analytical ↗
USGS1995

Water-quality assessment of the Rio Grande Valley study unit, Colorado, New Mexico, and Texas -- Analysis of selected nutrient, suspended-sediment, and pesticide data

This report contains a summary of data compiled from sources throughout the Rio Grande Valley study unit of the National Water-Quality Assessment program. Information presented includes the sources and types of water-quality data available, the utility of water-quality data for statistical analysis, and a description of recent water-quality conditions and trends and their relation to natural and human factors. Water-quality data are limited to concentrations of selected nutrient species in surface water and ground water, concentrations of suspended sediment and suspended solids in surface water, and pesticides in surface water, ground water, and biota. The Rio Grande Valley study unit includes about 45,900 square miles in Colorado, New Mexico, and Texas upstream from the streamflow-monitoring station Rio Grande at El Paso, Texas. The area also includes the San Luis Closed Basin and the surface-water closed basins east of the Continental Divide and north of the United States-Mexico international border. The Rio Grande drains about 29,300 square miles in these States; the remainder of the study unit area is in closed basins. Concentrations of all nutrients found in surface-water samples collected from the Rio Grande, with the exception of phosphorus, generally remained nearly constant from the northernmost station in the study unit to Rio Grande near Isleta, where concentrations were larger by an order of magnitude. Total nitrogen and total phosphorus loads increased downstream between Lobatos, Colorado, and Albuquerque, New Mexico. Nutrient concentrations remained elevated with slight variations until downstream from Elephant Butte Reservoir, where nutrient concentrations were lower. Nutrient concentrations then increased downstream from the reservoir, as evidenced by elevated concentrations at Rio Grande at El Paso, Texas. Suspended-sediment concentrations were similar at stations upstream from Otowi Bridge near San Ildefonso, New Mexico. The concentration and estimated load were nearly two orders of magnitude larger at this station relative to upstream stations. Cochiti Lake allows suspended sediment to settle, thus the resulting concentration is substantially lower downstream from the reservoir. Downstream from Cochiti Lake, concentrations again increased due to inflow from tributaries, other ephemeral streams and arroyos, and agricultural and urban areas. Two ephemeral tributaries (Rio Puerco and Rio Salado, which are south of Albuquerque) contribute substantial amounts of suspended sediment to the Rio Grande. Suspended-sediment concentrations in the Rio Grande just downstream from Elephant Butte Dam decreased by nearly three orders of magnitude due to settling in the reservoir. Concentrations then increased due to agricultural and urban impacts downstream from the reservoir. Nutrients in ground water in the study unit do not appear to be a widespread problem. However, localized areas that have elevated nitrate concentrations have been documented. The largest median nitrate concentration was found in water from wells located in the Basin and Range-mountains-urban data stratum (3.0 milligrams per liter) and the smallest median nitrate concentration was found in water from wells located in the Southern Rocky Mountainsmountains-forest data stratum (0.08 milligram per liter). Few (3 percent) nitrate concentrations in water from wells in all data strata were greater than 10 milligrams per liter, and most (82 percent) were less than 2 milligrams per liter. Comparison of nitrate concentrations in water from wells located in specific land-use settings across all hydrogeologic settings, with the exception of the Colorado Plateau, indicated that the largest median nitrate concentration was associated with rangeland land use and that larger nitrate concentrations were found in water from shallow wells. Water from wells located in areas of rangeland land use consistently had larger median nutrient concentrations than water from wells in areas of other land uses. The largest median ammonia concentration was in water from wells located in the Colorado Plateau-San Juan Basin-rangeland data stratum (0.27 milligram per liter). Most median ammonia concentrations were less than 0.03 milligram per liter, indicating that elevated ammonia concentrations are not a major issue in the study unit. The largest median orthophosphate concentration was found in water from wells located in the Southern Rocky Mountains-mountains-forest data stratum (0.15 milligram per liter) and the smallest was found in water from wells located in the Basin and Range-mountains-urban data stratum (0.02 milligram per liter). Most orthophosphate concentrations (85 percent) sampled were less than 0.2 milligram per liter, indicating that elevated orthophosphate concentrations are not a major issue in the study unit. Pesticide analyses were available for only 38 ground-water sampling sites in the Rio Grande Valley study unit. Diazinon, at a concentration of 0.01 microgram per liter, was the only pesticide detected and it was detected at only one site. More study is needed to determine if pesticides are affecting ground-water quality in the Rio Grande Valley study unit. Surface-water biological pesticide data were inadequate for in-depth analysis. The primary sources of data were the U.S. Fish and Wildlife Service and the U.S. Geological Survey. In the U.S. Fish and Wildlife Service study p,p'-DDE, a degradation product of DDT, was detected most frequently; highest concentrations were found at Stahman Farms in carp (6.3 micrograms per gram wet-weight) and at Hatch in Western kingbird (5.1 micrograms per gram wet-weight). In the U.S. Geological Survey study of Bosque del Apache National Wildlife Refuge no detectable organochlorine concentrations were found in plants, but detectable levels of p,p'-DDE were found in coot and carp, with a maximum concentration of 0.12 microgram per gram wet-weight found in coot.

Colorado, New Mexico, Texas↗
USGS2021

Technique to estimate generalized skew coefficients of annual peak streamflow for natural watershed conditions in Texas, Oklahoma, and eastern New Mexico

Reliable information about the frequency of annual peak streamflow is needed for floodplain management, objective assessment of flood risk, and cost-effective design of dams, levees, other flood-control structures, and roads, bridges, and culverts. Generalized skew coefficients are among the data needed for log-Pearson type III peak-streamflow frequency analyses of annual peak streamflows. A technique is presented to estimate generalized skew coefficients used for log-Pearson type III peak-streamflow frequency analyses of annual peak streamflow from natural watersheds (minimal regulation and minimal impervious cover). The estimation of generalized skew coefficients was based on annual and historical peak streamflow data from an initial set of 444 selected USGS streamgaging stations (streamgages) with at least 30 years of recorded annual peak streamflows from natural watersheds in Texas, Oklahoma, and the part of New Mexico east of the Great Continental Divide. The primary focus was to obtain information that could be used to update previously published generalized skew coefficients in Texas. Of the 444 candidate streamgages, 341 were used in the final construction of statistical models. Two generalized additive models (GAMs) were used to predict generalized skew based on a 2-dimensional smooth on projected Albers equal area coordinates of either (1) the locations of the centroids of the gaged watersheds or (2) the streamgage locations. To create maps of generalized skew coefficients, predictions were made on a 1-kilometer grid and contour lines were superimposed. The centroid-location map, with a mean-squared error (MSE) of 0.216, is preferred. Generalized skew coefficients from the centroid-location map, along with the MSE, are useful for computing weighted-skew values when conducting frequency analyses of annual peak streamflow following the guidelines set forth in Bulletin 17C. Based on the results of the study, text revision of the TxDOT Hydraulic Design Manual could be made.

New Mexico, Oklahoma, Texas↗
USGS2023

Habitat selection by lake trout at reefs near Drummond Island, Lake Huron: An evaluation of physical characteristics used for spawning

Continued dependence on stocking of hatchery-reared lake trout, Salvelinus namaycush , in the Laurentian Great Lakes indicates recruitment bottlenecks still exist between spawning and the juvenile life stage (age-1). Possible impediments include poor habitat quality and an inability of hatchery-origin adults to select substrates that support successful incubation. Understanding of characteristics of suitable lake trout spawning habitat is limited but has centered on the cobble-contour framework, which identifies sloped reefs with cobble substrate and deep interstices to entrain eggs as spawning habitat. A novel sampling design based on acoustic-telemetry detections was used to evaluate relative importance of cobble-contour habitat characteristics (substrate size, homogeneity, interstitial depth, and slope) for predicting egg presence on two spawning reefs in northern Lake Huron. Fixed effect logistic regression models were used to relate egg presence to all possible combinations of measured physical characteristics. Physical characteristics of sites with naturally spawned eggs present varied, and no single best model predicted egg presence. Model selection and multi-model inference revealed slope to be the only informative predictor. Substrate size, homogeneity, and interstitial depth were not important. Embryo survival-to-hatch was also compared among sampling sites using in situ habitat bioassays seeded with hatchery fertilized embryos. No difference in embryo survival was observed between sites where naturally spawned eggs were present vs. absent. Over half of sites evaluated exceeded 75% survival. Naturally spawned eggs were observed at 25 of 57 sites. We suspect other characteristics such as interstitial flow could be helpful for predicting selection of lake trout spawning habitats.

Michigan↗
USGS2001

Preliminary assessment of streamflow characteristics for selected streams at Fort Gordon, Georgia, 1999-2000

In 1999, the U.S. Geological Survey, in cooperation with the U.S. Army Signal Center and Fort Gordon, began collection of periodic streamflow data at four streams on the military base to assess and estimate streamflow characteristics of those streams for potential water-supply sources. Simple and reliable methods of determining streamflow characteristics of selected streams on the military base are needed for the initial implementation of the Fort Gordon Integrated Natural Resources Management Plan. Long-term streamflow data from the Butler Creek streamflow gaging station were used along with several concurrent discharge measurements made at three selected partial-record streamflow stations on Fort Gordon to determine selected low-flow streamflow characteristics. Streamflow data were collected and analyzed using standard U.S. Geological Survey methods and computer application programs to verify the use of simple drainage area to discharge ratios, which were used to estimate the low-flow characteristics for the selected streams. Low-flow data computed based on daily mean streamflow include: mean discharges for consecutive 1-, 3-, 7-, 14-, and 30-day period and low-flow estimates of 7Q10, 30Q2, 60Q2, and 90Q2 recurrence intervals. Flow-duration data also were determined for the 10-, 30-, 50-, 70-, and 90-percent exceedence flows. Preliminary analyses of the streamflow indicate that the flow duration and selected low-flow statistics for the selected streams averages from about 0.15 to 2.27 cubic feet per square mile. The long-term gaged streamflow data indicate that the streamflow conditions for the period analyzed were in the 50- to 90-percent flow range, or in which streamflow would be exceeded about 50 to 90 percent of the time.

Georgia↗
USGS2008

Determination of Baseline Periods of Record for Selected Streamflow-Gaging Stations in New Jersey for Determining Ecologically Relevant Hydrologic Indices (ERHI)

Hydrologic changes in New Jersey stream basins resulting from human activity can affect the flow and ecology of the streams. To assess future changes in streamflow resulting from human activity an understanding of the natural variability of streamflow is needed. The natural variability can be classified using Ecologically Relevant Hydrologic Indices (ERHIs). ERHIs are defined as selected streamflow statistics that characterize elements of the flow regime that substantially affect biological health and ecological sustainability. ERHIs are used to quantitatively characterize aspects of the streamflow regime, including magnitude, duration, frequency, timing, and rate of change. Changes in ERHI values can occur as a result of human activity, and changes in ERHIs over time at various stream locations can provide information about the degree of alteration in aquatic ecosystems at or near those locations. New Jersey streams can be divided into four classes (A, B, C, or D), where streams with similar ERHI values (determined from cluster analysis) are assigned the same stream class. In order to detect and quantify changes in ERHIs at selected streamflow-gaging stations, a 'baseline' period is needed. Ideally, a baseline period is a period of continuous daily streamflow record at a gaging station where human activity along the contributing stream reach or in the stream's basin is minimal. Because substantial urbanization and other development had already occurred before continuous streamflow-gaging stations were installed, it is not possible to identify baseline periods that meet this criterion for many reaches in New Jersey. Therefore, the baseline period for a considerably altered basin can be defined as a period prior to a substantial human-induced change in the drainage basin or stream reach (such as regulations or diversions), or a period during which development did not change substantially. Index stations (stations with minimal urbanization) were defined as streamflow-gaging stations in basins that contain less than 15 percent urban land use throughout the period of continuous streamflow record. A minimum baseline period of record for each stream class was determined by comparing the variability of selected ERHIs among consecutive 5-, 10-, 15-, and 20-year time increments for index stations. On the basis of this analysis, stream classes A and D were assigned a minimum of 20 years of continuous record as a baseline period and stream classes B and C, a minimum of 10 years. Baseline periods were calculated for 85 streamflow-gaging stations in New Jersey with 10 or more years of continuous daily streamflow data, and the values of 171 ERHIs also were calculated for these baseline periods for each station. Baseline periods were determined by using historical streamflow-gaging station data, estimated changes in impervious surface in the drainage basin, and statistically significant changes in annual base flow and runoff. Historical records were reviewed to identify years during which regulation, diversions, or withdrawals occurred in the drainage basins. Such years were not included in baseline periods of record. For some sites, the baseline period of record was shorter than the minimum period of record specified for the given stream class. In such cases, the baseline period was rated as 'poor'. Impervious surface was used as an indicator of urbanization and change in streamflow characteristics owing to increases in storm runoff and decreases in base flow. Percentages of impervious surface were estimated for 85 streamflow-gaging stations from available municipal population-density data by using a regression model. Where the period of record was sufficiently long, all years after the impervious surface exceeded 10 to 20 percent were excluded from the baseline period. The percentage of impervious surface also was used as a criterion in assigning qualitative ratings to baseline periods. Changes in trends of annual base fl

Scientific Investigations Report↗
USGS2006

Hydrology and water quality in the Green River and surrounding agricultural areas near Green River in Emery and Grand Counties, Utah, 2004-05

Water from the Colorado River and its tributaries is used for municipal and industrial purposes by about 27 million people and irrigates nearly 4 million acres of land in the Western United States. Water users in the Upper Colorado River Basin consume water from the Colorado River and its tributaries, reducing the amount of water in the river. In addition, application of water to agricultural land within the basin in excess of crop needs can increase the transport of dissolved solids to the river. As a result, dissolved-solids concentrations in the Colorado River have increased, affecting downstream water users. During 2004-05, the U.S. Geological Survey, in cooperation with the Natural Resources Conservation Service, investigated the occurrence and distribution of dissolved solids in water from the agricultural areas near Green River, Utah, and in the adjacent reach of the Green River, a principle tributary of the Colorado River. The flow-weighted concentration of dissolved solids diverted from the Green River for irrigation during 2004 and 2005 was 357 milligrams per liter and the mean concentration of water collected from seeps and drains where water was returning to the river during low-flow conditions was 4,170 milligrams per liter. The dissolved-solids concentration in water from the shallow part of the ground-water system ranged from 687 to 55,900 milligrams per liter. Measurable amounts of dissolved solids discharging to the Green River are present almost exclusively along the river banks or near the mouths of dry washes that bisect the agricultural areas. The median dissolved-solids load in discharge from the 17 drains and seeps visited during the study was 0.35 ton per day. Seasonal estimates of the dissolved-solids load discharging from the study area ranged from 2,800 tons in the winter to 6,400 tons in the spring. The estimate of dissolved solids discharging from the study area annually is 15,700 tons. Water samples collected from selected sites within the Green River agricultural areas were analyzed for naturally occurring isotopes of strontium and boron, which can be useful for differentiating dissolved-solids sources. Substantial variations in the delta strontium-87 and delta boron-11 values among the sites were measured. Canal and river samples had relatively low concentrations of strontium and the most positive (heavier) isotopic ratios, while drains and seeps had a wide range of strontium concentrations and isotopic ratios that generally were less positive (lighter). Further study of the variation in strontium and boron concentrations and isotope ratios may provide a means to distinguish end members and discern processes affecting dissolved solids within the Green River study area; however, the results from isotope data collected during this study are inconclusive. Flow and seepage losses were estimated for the three main canals in the study area for May 2 to October 4 in any given year. This period coincides with the frost-free period in the Green River area. Estimated diversion from the Green River into the Thayn, East Side, and Green River Canals is 6,600, 6,070, and 19,900 acre-feet, respectively. The estimated seepage loss to ground water from the Thayn, East Side, and Green River Canals during the same period is 1,550, 1,460, and 4,710 acre-feet, respectively.

Utah↗
USGS2018

Tools for measuring, modelling, and valuing ecosystem services: guidance for Key Biodiversity Areas, natural World Heritage sites, and protected areas

Increasing interest in measuring, modelling and valuing ecosystem services (ES), the benefits that ecosystems provide to people, has resulted in the development of an array of ES assessment tools in recent years. Selecting an appropriate tool for measuring and modelling ES can be challenging. This document provides guidance for practitioners on existing tools that can be applied to measure or model ES provided by important sites for biodiversity and nature conservation, including Key Biodiversity Areas (KBAs), natural World Heritage sites (WHS), and protected areas (PAs). Selecting an appropriate tool requires identifying the specific question being addressed, what sorts of results or outputs are required, and consideration of practical factors such as the level of expertise, time and data required for applying any given tool. This guide builds on existing reviews of ES assessment tools, but has an explicit focus on assessing ES for sites of importance for biodiversity and nature conservation.

Report↗
USGS2006

Volume loss and mass balance for selected physicochemical constituents in Lake Pepin, upper Mississippi River, USA

Lake Pepin is a large, natural riverine lake in the upper Mississippi River downstream of the Twin Cities metropolitan area and the confluence with the Minnesota River, which are sources of suspended sediments and pollutants (nutrients and potentially toxic materials). The lake has a history of water quality problems and has been an efficient trap for suspended sediment and sediment-associated contaminants. Based on bathymetric survey data, the loss of volume in Lake Pepin between 1897 and 1986 was estimated. The mass balance of the lake for total suspended solids, chlorophyll a, total and dissolved reactive phosphorus and total nitrogen for 9 June 1987 to 4 June 1988 was also estimated. Water was sampled at the inflow, mid-reach, and outflow of the lake. Lake Pepin is very eutrophic, based on concentrations of phosphorus, nitrogen and chlorophyll a. The lake volume decreased by approximately 21% between 1897 and 1986. Longitudinally, the greatest fraction of the whole-lake volume loss occurred in the upper lake (45%). Based on mass balance calculations, the lake trapped about half of the suspended solids entering the lake, but it had a small net export of chlorophyll a. The lake was a sink for phosphorus and nitrogen; however, it had a net export of total phosphorus at times during low flows in the summer of 1987. Internal loading of dissolved reactive phosphorus was prevalent during the summer of 1987. The only substantial export of total nitrogen occurred in June 1987 during a bloom of cyanobacteria. The lake should continue to be an efficient trap for suspended sediment and associated contaminants, but its trapping efficiency will continue to decline slowly as lake volume decreases. Lake Pepin will probably continue to experience water quality problems, such as nuisance algal growths and low dissolved oxygen, especially during summer low flows.

Minnesota, Wisconsin↗
USGS1987

In search of the Abrams post office, Trinity County

An understanding of earth history depends in part on stratigraphy, a division of geology in which the distinctive features of natural units or formations of layered rocks are studied and described and names are assigned to them. The procedures for describing and naming rock units in a uniform way are incorporated in documents known as stratigraphic codes. The North American Stratigraphic Code (1983) is currently used by most geologists in the United States when formation names are selected. Rock unit names consist of a geographic name, generally taken from a natural feature near the locality where the unit was first described, followed by a descriptive feature, usually the dominant rock type in the unit. Although the procedure for naming a rock unit seems straightforward, stratigraphic nomenclature can lead to confusion when the principles outlined in the stratigraphic code are ignored or incorrectly applied. This paper traces the naming of the Abrams Mica Schist, one of the major units of the northern California Klamath Mountains. It describes how uncertainty about the location of the geographic feature after which the unit was named has led to conflicting terminology. The search revealed some interesting history of the early days of mining in the Coffee Creek region of the Trinity Alps in Trinity County.

California Geology↗
USGS2024

Development of a hydrogeologic visualization model for western Sarpy County, Nebraska

Population in western Sarpy County, Nebraska, has steadily increased over the last several decades and has led to increased groundwater use for domestic purposes. To meet the increase in demand, the Papio-Missouri River Natural Resources District is seeking to use all available sources of groundwater in western Sarpy County. Additionally, elevated groundwater nitrate plus nitrite as nitrogen concentrations were detected, indicating the need to better understand the groundwater quality of the area. Although the general geology of the area is understood, the area does not have detailed information on the extent of the various aquifers, particularly the Dakota aquifer. To characterize these aquifers, the Papio-Missouri River Natural Resources District invested in airborne electromagnetic surveys of the area to better understand the subsurface geology. Although these surveys improved understanding of the groundwater systems in the area, the Papio-Missouri River Natural Resources District wanted to integrate the subsurface information with available water-quality and groundwater-level data. In response, the U.S. Geological Survey, in cooperation with the Papio-Missouri River Natural Resources District, the Nebraska Natural Resources Commission, and the Nebraska Department of Natural Resources, assembled geologic, hydrogeologic and nitrate plus nitrite as nitrogen information for the selected area into a three-dimensional visualization computer software package called GeoScene3D. The completed GeoScene3D project was assembled to provide a visualization of the groundwater systems and associated water-quality results in Sarpy County and to provide the Papio-Missouri River Natural Resources District managers with information that can be used to make more informed groundwater resource-planning decisions in the future. This report details the development of a three-dimensional model created within GeoScene3D to visualize the subsurface, particularly the Dakota Sandstone in western Sarpy County.

Nebraska↗
USGS2026

Estimating paleotemperature using stable isotopes of soil-formed phyllosilicates from paleosols: A review

Fossilized soils, or paleosols, contain soil-formed phyllosilicates whose stable isotopic compositions may be used to calculate paleotemperature and thus reconstruct ancient terrestrial environments. Though paleosols are common in the geologic record, the use of phyllosilicates as paleotemperature proxies is limited in the literature owing to difficulties with selecting optimal paleosols, isolation from non-clay minerals and organic materials, mixtures of phyllosilicates in natural samples, wide variations of chemical compositions for phyllosilicates, and limited to undefined equilibrium fractionation factors between phyllosilicates-water. Here, we address these challenges by examining and comparing methods used for sample selection, mineral isolation, pretreatments, mineral identification, conventional and developing methods for oxygen and hydrogen isotopic analyses, and determination of phyllosilicate-water equilibrium fractionation factors, concluding with recommendations for best approaches for paleotemperature estimation. Additionally, we discuss how to identify and avoid detrital phyllosilicates, the impacts of diagenesis, comparison of stable isotope and non-isotope paleosol paleotemperature proxies, and challenges and opportunities for broadly using paleosols as paleoclimate archives. With ongoing efforts to refine this multi-faceted paleotemperature approach, the stable isotope geochemistry of soil-formed phyllosilicates continues to be an invaluable proxy system, enhancing our understanding of terrestrial paleoenvironments and paleoclimate.

Kansas↗
USGS2007

Isotopic analysis of N and O in nitrite and nitrate by sequential selective bacterial reduction to N2O

Nitrite is an important intermediate species in the biogeochemical cycling of nitrogen, but its role in natural aquatic systems is poorly understood. Isotopic data can be used to study the sources and transformations of NO 2 - in the environment, but methods for independent isotopic analyses of NO 2 - in the presence of other N species are still new and evolving. This study demonstrates that isotopic analyses of N and O in NO 2 - can be done by treating whole freshwater or saltwater samples with the denitrifying bacterium Stenotrophomonas nitritireducens , which selectively reduces NO 2 - to N 2 O for isotope ratio mass spectrometry. When calibrated with solutions containing NO 2 - with known isotopic compositions determined independently, reproducible δ 15 N and δ 18 O values were obtained at both natural-abundance levels (±0.2−0.5‰ for δ 15 N and ±0.4−1.0‰ for δ 18 O) and moderately enriched 15 N tracer levels (±20−50‰ for δ 15 N near 5000‰) for 5−20 nmol of NO 2 - (1−20 μmol/L in 1−5 mL aliquots). This method is highly selective for NO 2 - and was used for mixed samples containing both NO 2 - and NO 3 - with little or no measurable cross-contamination. In addition, mixed samples that were analyzed with S. nitritireducens were treated subsequently with Pseudomonas aureofaciens to reduce the NO 3 - in the absence of NO 2 - , providing isotopic analyses of NO 2 - and NO 3 - separately in the same aliquot. Sequential bacterial reduction methods like this one should be useful for a variety of isotopic studies aimed at understanding nitrogen cycling in aquatic environments. A test of these methods in an agricultural watershed in Indiana provides isotopic evidence for both nitrification and denitrification as sources of NO 2 - in a small stream.

Indiana↗
USGS2022

Genomic divergence, local adaptation, and complex demographic history may inform management of a popular sportfish species complex

The Neosho Bass ( Micropterus velox ), a former subspecies of the keystone top-predator and globally popular Smallmouth Bass ( M. dolomieu ), is endemic and narrowly restricted to small, clear streams of the Arkansas River Basin in the Central Interior Highlands (CIH) ecoregion, USA. Previous studies have detected some morphological, genetic, and genomic differentiation between the Neosho and Smallmouth Basses; however, the extent of neutral and adaptive divergence and patterns of intraspecific diversity are poorly understood. Furthermore, lineage diversification has likely been impacted by gene flow in some Neosho populations, which may be due to a combination of natural biogeographic processes and anthropogenic introductions. We assessed: (1) lineage divergence, (2) local directional selection (adaptive divergence), and (3) demographic history among Smallmouth Bass populations in the CIH using population genomic analyses of 50,828 single-nucleotide polymorphisms (SNPs) obtained through ddRAD-seq. Neosho and Smallmouth Bass formed monophyletic clades with 100% bootstrap support. We identified two major lineages within each species. We discovered six Neosho Bass populations (two nonadmixed and four admixed) and three nonadmixed Smallmouth Bass populations. We detected 29 SNPs putatively under directional selection in the Neosho range, suggesting populations may be locally adapted. Two populations were admixed via recent asymmetric secondary contact, perhaps after anthropogenic introduction. Two other populations were likely admixed via combinations of ancient and recent processes. These species comprise independently evolving lineages, some having experienced historical and natural admixture. These results may be critical for management of Neosho Bass as a distinct species and may aid in the conservation of other species with complex biogeographic histories.

Ecology and Evolution↗
USGS2018

Communicating information on nature-related topics: Preferred information channels and trust in sources

How information is communicated influences the public’s environmental perceptions and behaviors. Information channels and sources both play an important role in the dissemination of information. Trust in a source is often used as a proxy for whether a particular piece of information is credible. To determine preferences for information channels and trust in various sources for information on nature-related topics, a mail-out survey was sent to randomly selected U.S. addresses ( n = 1,030). Diverse groups of people may have differing communication preferences. Therefore, we explored differences in channel preferences and trust by demographics using regression models. Overall, the most preferred channels were personal experience, reading online content, and watching visual media online. The most trusted sources were science organizations, universities, and friends/family. Channel preferences varied the most by education level and age, while source trust was most influenced by education, race, age, and size of current residence (rural-urban). The influence of demographics varied depending on the individual channel and source, with some groups preferring certain channels or sources but not others. Results are useful to consider when disseminating information on nature-related topics to a general public audience. More broadly, results also suggest spreading information using different channels and sources depending on the specific audience being targeted.

PLoS ONE↗
USGS2008

Spatially explicit decision support for selecting translocation areas for Mojave desert tortoises

Spatially explicit decision support systems are assuming an increasing role in natural resource and conservation management. In order for these systems to be successful, however, they must address real-world management problems with input from both the scientific and management communities. The National Training Center at Fort Irwin, California, has expanded its training area, encroaching U.S. Fish and Wildlife Service critical habitat set aside for the Mojave desert tortoise ( Gopherus agassizii ), a federally threatened species. Of all the mitigation measures proposed to offset expansion, the most challenging to implement was the selection of areas most feasible for tortoise translocation. We developed an objective, open, scientifically defensible spatially explicit decision support system to evaluate translocation potential within the Western Mojave Recovery Unit for tortoise populations under imminent threat from military expansion. Using up to a total of 10 biological, anthropogenic, and/or logistical criteria, seven alternative translocation scenarios were developed. The final translocation model was a consensus model between the seven scenarios. Within the final model, six potential translocation areas were identified.

Biodiversity and Conservation↗
USGS2015

Estimating occupancy dynamics for large-scale monitoring networks: amphibian breeding occupancy across protected areas in the northeast United States

Regional monitoring strategies frequently employ a nested sampling design where a finite set of study areas from throughout a region are selected within which intensive sub-sampling occurs. This sampling protocol naturally lends itself to a hierarchical analysis to account for dependence among sub-samples. Implementing such an analysis within a classic likelihood framework is computationally prohibitive with species occurrence data when accounting for detection probabilities. Bayesian methods offer an alternative framework to make this analysis feasible. We demonstrate a general approach for estimating occupancy when data come from a nested sampling design. Using data from a regional monitoring program of wood frogs (Lithobates sylvaticus) and spotted salamanders (Ambystoma maculatum) in vernal pools, we analyzed data using static and dynamic occupancy frameworks. We analyzed observations from 2004-2013collected within 14 protected areas located throughout the northeast United States . We use the data set to estimate trends in occupancy at both the regional and individual protected area level. We show that occupancy at the regional level was relatively stable for both species. Much more variation occurred within individual study areas, with some populations declining and some increasing for both species. We found some evidence for a latitudinal gradient in trends among protected areas. However, support for this pattern is overestimated when the hierarchical nature of the data collection is not controlled for in the analysis. For both species, occupancy appeared to be declining in the most southern areas, while occupancy was stable or increasing in more northern areas. These results shed light on the range-level population status of these pond-breeding amphibians and our approach provides a framework that can be used to examine drivers of change including among-year and among-site variation in occurrence dynamics, while properly accounting for nested structure of data collection.

Ecology and Evolution↗