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Incorporating uncertainty into mercury-offset decisions with a probabilistic network for National Pollutant Discharge Elimination System permit holders: An interim report

This interim report describes an alternative approach for evaluating the efficacy of using mercury (Hg) offsets to improve water quality. Hg-offset programs may allow dischargers facing higher-pollution control costs to meet their regulatory obligations by making more cost effective pollutant-reduction decisions. Efficient Hg management requires methods to translate that science and economics into a regulatory decision framework. This report documents the work in progress by the U.S. Geological Survey’s Western Geographic Science Center in collaboration with Stanford University toward developing this decision framework to help managers, regulators, and other stakeholders decide whether offsets can cost effectively meet the Hg total maximum daily load (TMDL) requirements in the Sacramento River watershed. Two key approaches being considered are: (1) a probabilistic approach that explicitly incorporates scientific uncertainty, cost information, and value judgments; and (2) a quantitative approach that captures uncertainty in testing the feasibility of Hg offsets. Current fate and transport-process models commonly attempt to predict chemical transformations and transport pathways deterministically. However, the physical, chemical, and biologic processes controlling the fate and transport of Hg in aquatic environments are complex and poorly understood. Deterministic models of Hg environmental behavior contain large uncertainties, reflecting this lack of understanding. The uncertainty in these underlying physical processes may produce similarly large uncertainties in the decisionmaking process. However, decisions about control strategies are still being made despite the large uncertainties in current Hg loadings, the relations between total Hg (HgT) loading and methylmercury (MeHg) formation, and the relations between control efforts and Hg content in fish. The research presented here focuses on an alternative analytical approach to the current use of safety factors and deterministic methods for Hg TMDL decision support, one that is fully compatible with an adaptive management approach. This alternative approach uses empirical data and informed judgment to provide a scientific and technical basis for helping National Pollutant Discharge Elimination System (NPDES) permit holders make management decisions. An Hg-offset system would be an option if a wastewater-treatment plant could not achieve NPDES permit requirements for HgT reduction. We develop a probabilistic decision-analytical model consisting of three submodels for HgT loading, MeHg, and cost mitigation within a Bayesian network that integrates information of varying rigor and detail into a simple model of a complex system. Hg processes are identified and quantified by using a combination of historical data, statistical models, and expert judgment. Such an integrated approach to uncertainty analysis allows easy updating of prediction and inference when observations of model variables are made. We demonstrate our approach with data from the Cache Creek watershed (a subbasin of the Sacramento River watershed). The empirical models used to generate the needed probability distributions are based on the same empirical models currently being used by the Central Valley Regional Water Quality Control Cache Creek Hg TMDL working group. The significant difference is that input uncertainty and error are explicitly included in the model and propagated throughout its algorithms. This work demonstrates how to integrate uncertainty into the complex and highly uncertain Hg TMDL decisionmaking process. The various sources of uncertainty are propagated as decision risk that allows decisionmakers to simultaneously consider uncertainties in remediation/implementation costs while attempting to meet environmental/ecologic targets. We must note that this research is on going. As more data are collected, the HgT and cost-mitigation submodels are updated and the uncertainties may be reduced. Subsequently, the value of using a probabilistic framework for estimating and explicitly stating these uncertainties within a decisionmaking process can be estimated when new data are collected. Future work includes the design and implementation of a Bayesian network decision support system (BN-DSS) to produce mitigation scenarios for offset-project evaluation in the Cache Creek watershed. The decisionmaker, a wastewater-treatment plant, is expected to evaluate potential Hg-offset programs in terms of changes in HgT load changes, MeHg-production potential, project cost, and other suitability criteria. Subsequently, scenarios can be analyzed by performing sensitivity analyses and ranking environmental and economic uncertainties in terms of the decisionmaker’s preferences and risk choices. Such an analysis allows decisionmakers and stakeholders to explore various scenarios and predict the consequences of different stated preferences over outcomes.

Open-File Report

Airborne bacteria in Earth’s lower stratosphere resemble taxa detected in the troposphere: results from a new NASA aircraft bioaerosol collector (ABC)

Airborne microorganisms in the upper troposphere and lower stratosphere remain elusive due to a lack of reliable sample collection systems. To address this problem, we designed, installed, and flight-validated a novel Aircraft Bioaerosol Collector (ABC) for NASA's C-20A that can make collections for microbiological research investigations up to altitudes of 13.7 km. Herein we report results from the first set of science flights—four consecutive missions flown over the United States (US) from 30 October to 2 November, 2017. To ascertain how the concentration of airborne bacteria changed across the tropopause, we collected air during aircraft Ascent / Descent (0.3 to 11 km), as well as sustained Cruise altitudes in the lower stratosphere (~12 km). Bioaerosols were captured on DNA-treated gelatinous filters inside a cascade air sampler, then analyzed with molecular and culture-based characterization. Several viable bacterial isolates were recovered from flight altitudes, including Bacillus sp., Micrococcus sp., Arthrobacter sp., and Staphylococcus sp. from Cruise samples and Brachybacterium sp. from Ascent/Descent samples. Using 16S V4 sequencing methods for a culture-independent analysis of bacteria, the average number of total OTUs was 305 for Cruise samples and 276 for Ascent/Descent samples. Some taxa were more abundant in the flight samples than the ground samples, including OTUs from families Lachnospiraceae, Ruminococcaceae and Erysipelotrichaceae as well as the following genera: Clostridium, Mogibacterium, Corynebacterium, Bacteroides, Prevotella, Pseudomonas , and Parabacteroides . Surprisingly, our results revealed a homogeneous distribution of bacteria in the atmosphere up to 12 km. The observation could be due to atmospheric conditions producing similar background aerosols across the western US, as suggested by modeled back trajectories and satellite measurements. However, the influence of aircraft-associated bacterial contaminants could not be fully eliminated and that background signal was reported throughout our dataset. Considering the tremendous engineering challenge of collecting biomass at extreme altitudes where contamination from flight hardware remains an ever-present issue, we note the utility of using the stratosphere as a proving ground for planned life detection missions across the solar system.

Arizona, California, Colorado, Nevada, Utah

Density matters: Review of approaches to setting organism-based ballast water discharge standards

As part of their effort to develop national ballast water discharge standards under NPDES permitting, the Office of Water requested that WED scientists identify and review existing approaches to generating organism-based discharge standards for ballast water. Six potential approaches were identified and the utility and uncertainties of each approach was evaluated. During the process of reviewing the existing approaches, the WED scientists, in conjunction with scientists at the USGS and Smithsonian Institution, developed a new approach (per capita invasion probability or "PCIP") that addresses many of the limitations of the previous methodologies. THE PCIP approach allows risk managers to generate quantitative discharge standards using historical invasion rates, ballast water discharge volumes, and ballast water organism concentrations. The statistical power of sampling ballast water for both the validation of ballast water treatment systems and ship-board compliance monitoring with the existing methods, though it should be possible to obtain sufficient samples during treatment validation. The report will go to a National Academy of Sciences expert panel that will use it in their evaluation of approaches to developing ballast water discharge standards for the Office of Water.

Report

On glaciers

The changes in the sizes of glaciers has for long attracted the attention of glacialists on account of the scientific interest and the development of water‐power from the streams issuing from the glaciers. The International Congress of Geologists, at its Zurich meeting in 1894, appointed a committee, with members from many countries, to collect and publish information bearing on this subject. Annual reports were published in the Archives des Sciences , Geneva, from 1896 to 1906, after which they appeared in the Zeitschrift für Gletscherkunde until the war. It was not until the Prague meeting of the International Union of Geodesy and Geophysics in 1927 that a new Commission des Glaciers was appointed, which is about to resume publication.

Eos, Transactions, American Geophysical Union

Northern Gulf of Mexico: USGS science contributions to a resilient coast, 2006-2011

The devastating hurricane season of 2005 challenged U.S. Geological Survey (USGS) to develop a science base for resource managers and policy makers that could provide an understanding of the multiple stressors and influence affecting the northern Gulf of Mexico coast and to rack changes in linked coastal systems. The complexity of the Gulf Coast requires a science strategy for data collection and data reporting that is consistent across regional ecosystems and that can be applied to both short-term and long-term responses to stressors.

Gulf Of Mexico

Colored shaded-relief bathymetry, acoustic backscatter, and selected perspective views of the Inner Continental Borderland, southern California

In late 2013, Scripps Institution of Oceanography collected multibeam bathymetry and acoustic-backscatter data of the Inner Continental Borderland Region, Southern California. The U.S. Geological Survey Pacific Coastal and Marine Science Center processed these data, and this report provides the data in a number of different formats in addition to a set of map sheets. The data catalog provides the new bathymetry and acoustic-backscatter data, collected mainly in the Gulf of Santa Catalina and San Diego Trough, as well as this new bathymetry data merged with other publicly available bathymetry data from the region. Sheet 1 displays a colored shaded-relief bathymetry map of the Inner Continental Borderland generated from the merged bathymetry data. Sheet 2 displays the new acoustic-backscatter data along with other available backscatter data in the region. Sheet 3 displays selected perspective views of the bathymetry data highlighting submarine canyon and channel systems, knolls, and tectonic features.

California

Studies by the U.S. Geological Survey in Alaska, 2004

The collection of six papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is the first 'online only' version of Studies by the U.S. Geological Survey in Alaska, reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.

Professional Paper

Studies by the U.S. Geological Survey in Alaska, 2005

Summary The collection of papers that follows continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation’s needs for Earth-science information in Alaska. This professional paper is one of a series of “online only” versions of Studies by the U.S. Geological Survey in Alaska , reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.

Alaska

Studies by the U.S. Geological Survey in Alaska, 2007

The collection of papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is one of a series of 'online only' versions of Studies by the U.S. Geological Survey in Alaska, reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.

Professional Paper

Studies by the U.S. Geological Survey in Alaska, 2008-2009

The collection of papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is one of a series of 'online only' versions of Studies by the U.S. Geological Survey in Alaska, reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.

Professional Paper

Studies by the U.S. Geological Survey in Alaska, 2010

The collection of papers that follows continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation’s needs for Earth-science information in Alaska. This professional paper is one of a series of “online only” versions of Studies by the U.S. Geological Survey in Alaska , reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.

Alaska

Studies by the U.S. Geological Survey in Alaska, 2011

The collection of papers that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series represents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation's needs for Earth-science information in Alaska. This professional paper is one of a series of "online only" versions of Studies by the U.S. Geological Survey in Alaska , reflecting the current trend toward disseminating research results on the World Wide Web with rapid posting of completed reports.

Alaska

Climate Change and Water Resources Management: A Federal Perspective

Many challenges, including climate change, face the Nation's water managers. The Intergovernmental Panel on Climate Change (IPCC) has provided estimates of how climate may change, but more understanding of the processes driving the changes, the sequences of the changes, and the manifestation of these global changes at different scales could be beneficial. Since the changes will likely affect fundamental drivers of the hydrological cycle, climate change may have a large impact on water resources and water resources managers. The purpose of this interagency report prepared by the U.S. Geological Survey (USGS), U.S. Army Corps of Engineers (USACE), Bureau of Reclamation (Reclamation), and National Oceanic and Atmospheric Administration (NOAA) is to explore strategies to improve water management by tracking, anticipating, and responding to climate change. This report describes the existing and still needed underpinning science crucial to addressing the many impacts of climate change on water resources management.

Circular

Community for Data Integration 2016 annual report

The Community for Data Integration (CDI) represents a dynamic community of practice focused on advancing science data and information management and integration capabilities across the U.S. Geological Survey and the CDI community. This annual report describes the various presentations, activities, and outcomes of the CDI monthly forums, working groups, virtual training series, and other CDI-sponsored events in fiscal year 2016. The report also describes the objectives and accomplishments of the 13 CDI-funded projects in fiscal year 2016.

Open-File Report

Water-quality constituent concentrations and loads computed using real-time water-quality data for the Republican River, Clay Center, Kansas, August 2018 through July 2023

Milford Lake, the largest reservoir by surface area in Kansas, has had confirmed harmful algal blooms every summer since reporting began in 2011, except 2018–19. Milford Lake has been listed as impaired and designated hypereutrophic under section 303(d) of the 1972 Clean Water Act. In 2014, the Kansas Department of Health and Environment established a total maximum daily load for eutrophication and dissolved oxygen impairments. In 2018, the Natural Resources Conservation Service funded the Regional Conservation Partnership Program for the Milford Lake Watershed to focus on best management practices in the Lower Republican River Basin. The U.S. Geological Survey, in cooperation with the Kansas Water Office, completed this study to assess and quantify water-quality constituent concentrations and loads for total nitrogen (TN), total phosphorus (TP), and suspended sediment (SS) using previously published models for the Republican River near Clay Center, Kansas (U.S. Geological Survey station 06856600), about 15 miles upstream from Milford Lake, during August 1, 2018, through July 31, 2023. TN, TP, and SS concentrations and loads were monitored because of their relation to water supply and water-quality issues in Milford Lake, including nutrient and sediment transport, taste-and-odor events, potentially toxic cyano-harmful algal bloom events, and subsequent downstream transport of contaminants. Data from this report can be used to evaluate changing conditions, provide science-based information for decision making, and help meet regulatory requirements. The study mean annual loads for TN and TP were greater than the reported mean annual total maximum daily load and exceeded the watershed reduction goals as well as Kansas nonpoint source reduction goals defined by the Watershed Restoration and Protection Strategy for the Lower Republican watershed. TN and TP annual loads during 2019–20 were greater than the defined mean annual total maximum daily load. During 2022, TN and TP annual loads were less than the Kansas nonpoint source reduction goal and during 2023 were less than the watershed reduction goal. SS loads were less than the mean annual sedimentation rate computed from the total maximum daily load for the entirety of the study period, and the study mean annual load was 72 percent less than the designed annual reservoir sedimentation rate for Milford Lake. Data collected during the study period represented a wide range of streamflow and water-quality conditions at the Clay Center site, ranging from low-flow with less frequent runoff during 2023 to high-flow with frequent runoff during 2018. Nutrient reduction goals were only met in the final 2 years of the study period when annual mean flow conditions were lower than normal, indicating that goals may be unattainable during average or high-flow conditions. In all years except 2019, the annual mean SS load was less than the 20-year sediment load reduction target. Although annual SS loads at the Clay Center site generally decreased over time, corresponding reductions in annual streamflow indicated that these reductions may primarily be related to less frequent runoff from the upstream basin. Continued water-quality monitoring and tracking of best management practices are necessary to understand the success of Regional Conservation Partnership Program efforts to reduce nutrient transport in the Milford Lake Watershed.

Kansas

Studies by the U.S. Geological Survey in Alaska, 2001

The collection of 14 studies that follow continues the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. This series presents new and sometimes-preliminary findings that are of interest to Earth scientists in academia, government, and industry; to land and resource managers; and to the general public. The reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State, serving to emphasize the diversity of USGS efforts to meet the Nation’s needs for Earth-science information in Alaska.The chapters in this volume are organized under the topics Geologic Framework, Environment and Climate, and Hazards. This organization is intended to reflect the scope and objectives of current USGS programs in Alaska.

Alaska

U.S. Geological Survey Scientific Activities in the Exploration of Antarctica: Introduction to Antarctica (Including USGS Field Personnel: 1946-59)

INTRODUCTION Antarctica is the planet's fifth largest continent [13.2 million km2 (5.1 million mi2)]; it contains the Earth's largest (of two) remaining ice sheets; it is considered to be one of the most important scientific laboratories on Earth. This report is the introduction to a series that covers 60 years of U.S. Geological Survey (USGS) scientific activity in Antarctica. It will concentrate primarily on three major topics: 1) a brief chronological record of the historical search, discovery, and exploration of the southern continent by humans; 2) early USGS scientific activities in Antarctica, listing expeditions, projects, people and resulting professional publications for Operation Highjump, 1946-47; Operation Windmill, 1947-48; USS Atka Reconnaissance Cruise, 1954-55; and Operation Deep Freeze I, II, III, and IV, 1955-59, including IGY; 3) significant changes that have occurred in Antarctic exploration and research since World War II will be discussed at the end of this report. Subsequent Open-File Reports will provide a year-by-year documentation of USGS scientific activities and accomplishments in Antarctica beginning with the post-IGY, 1959-60 research team. One Open-File Report is planned to be written for each field-based season. For an example of the series format, see Open-File Reports 2006-1113 (Meunier, 2007a) and 2006-1114 (Meunier, 2007b). This report is a companion document to Open-File Report 2006-1116 (Meunier, 2007c). The USGS mapping and science programs in Antarctica are among the longest continuously funded projects in the United States Antarctic Program (USAP). The 2005-06 field season is the 56th consecutive U.S. expedition in which USGS scientists have been participants, starting in 1946. USGS and the National Science Foundation (NSF) cooperation began with the establishment by NSF of the U.S. Antarctic (Research) Program [USA(R)P] in 1958-59 under Operation Deep Freeze IV (DF IV) and was given the responsibility for the principal coordination and management of all U.S. scientific activities in Antarctica in Deep Freeze 60 (DF 60) (1959-60). Financial support from NSF, mostly in the form of Memorandum of Understandings (MOUs) and Cooperative Agreements, extends back to this period and can be attributed to the need for accurate geologic, geophysical, and topographic base maps of specific field areas or regions where NSF-funded science projects were planned. The epoch of Antarctic exploration during the IGY was driven by science and, in a spirit of peaceful cooperation, the international scientific community wanted to limit military activities on the continent to logistical support (Meunier, 1979 [2007], p. 38). The USGS, a Federal civilian science agency in the Department of the Interior, has, since its founding in 1879, carried out numerous field-based national (and some international) programs in biology, geology, geophysics, hydrology, and mapping. Therefore, the USGS was the obvious choice for these tasks, because it already had a professional staff of experienced mapmakers, scientists, and program managers with the foresight, dedication, and understanding of the need for accurate maps to support the science programs in Antarctica when asked to do so by the U.S. National Academy of Sciences. Public Laws 85-743 and 87-626, signed in August 1958, and in September 1962, respectively, authorized the Secretary, U.S. Department of the Interior, through the USGS, to support mapping and scientific work in Antarctica (Meunier, 1979 [2007], appendix A). Open-File Report 2006-1116 includes scanned facsimiles of postal cachets. It has become an international practice to create postal cachets to commemorate special events and projects in Antarctica. A cachet is defined as a seal or commemorative design printed or stamped on an envelope to mark a philatelic or special event. The inked impression illustrates to the scientist, historian, stamp collector, and general public the multidisciplinary science projects staffed by USGS and collaborating scientists during the field season. Since 1960, philatelic cachets have been created by team members for each USGS field season and, in most cases, these cachets depict the specific geographic areas and field season program objectives. The cachets become a convenient documentation of the people, projects, and geographic places of interest for that year. Because the cachets are representative of USGS activities, each year's cachet is included as a digital facsimile in that year's Open-File Report. In the 1980s, multiple USGS cachets were prepared each year, one for use by the winter team at Amundsen-Scott South Pole Station and the other for the project work areas of the austral summer field season programs.

Open-File Report

State of science, gap analysis, and prioritization for southeastern United States water-quality impacts from coastal storms—Fiscal year 2023 program report to the Water Resources Mission Area from the Water Availability Impacts of Extreme Events Program—Hurricanes

Tropical cyclones (coastal storm events that include tropical depressions, tropical storms, and hurricanes) cause landscape-scale disturbances that can lead to impaired water quality and thus reduce water availability for use. Stakeholders and scientists at local and national scales have illustrated a need for understanding these risks to water quality. A regional and comprehensive understanding of the impacts of tropical storms and hurricanes on surface-water and groundwater quality—and thus water availability—is lacking for potentially impacted coastal and inland areas. As the U.S. Geological Survey considers development of tools to predict the extent to which water-quality impacts of hurricanes affect water availability, an assessment of the state of the science of hurricane impacts is needed, including a gap analysis and prioritization of data and science needs. This assessment focuses on the southeastern coastal States.

southeastern United States