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Uncertainty and risk evaluation during the exploration stage of geothermal development

Quantifying and representing uncertainty for geothermal systems is often ignored, in practice, during the exploration phase of a geothermal development project. We propose that this occurs potentially because the task seems so formidable. The primary goal of this paper is to initiate a dialogue within the geothermal community about: which geothermal uncertainties should receive the most attention and which uncertainty analysis methods could provide the greatest benefit for the advancement of the geothermal energy industry. In this paper, we discuss uncertainty quantification techniques that are applicable to geothermal exploration. In general, uncertainty associated with data acquisition/processing (i.e., objective uncertainty) is small compared to the uncertainty in interpretational space (i.e., subjective uncertainty) that lies between data points where extrapolation is required. Therefore, it is important to classify, assess, and quantify uncertainty to help select strategies to reduce uncertainty, and to better gauge the impact that separate uncertainties have on the overall likelihood of project success. In addition, geostatistics provides multiple quantitative methods for producing stochastic models which adhere to measured data and spatial correlation. The petroleum industry has successfully used both geostastistics and decision analysis methods to combine diverse and multiple types of uncertainties. We argue that instead of one single and final interpretation of the geothermal system, numerous interpretations may be more indicative of the possible subsurface scenarios, and these different scenarios can be evaluated using decision analyses and value of information methodologies. Lastly, we recommend that the potential power generation of a geothermal reservoir should be grounded in the geologic data and modeling for a specific field and their estimated uncertainties. In this paper, we provide a brief overview of many of these topics while a more complete review has been recently published in Witter et al. (2019).

Conference Paper

Quantifying the effect of beating inferred from recorded responses of tall buildings

The beating phenomenon observed in recorded earthquake responses of a tall building in Japan and of two others buildings in the U.S. are examined in this paper. The objective of the paper is to discuss the significance of beating and to estimate what percentage of total shaking energy impacting a building is contributed by beating when it occurs. Beating is prominent in the prolonged resonant responses of lightly damped structures and is a periodic vibrational behavior caused by distinctive coupling between translational and torsional modes that typically have close frequencies. Resonances from site effects may also enhance beating. Spectral analyses and system identification techniques are used herein to quantify the periods and amplitudes of the beating from strong-motion recordings of the three buildings. Quantification of beating is a first step towards determining remedial actions to improve building resilience to this phenomenon. It is shown by the analysis presented in this paper that the ratio of additional vibrational energy of a building exhibiting beating with respect to a postulated zero beating status can be as much as 105% depending on the building and the strong shaking record. Hence, beating should be considered during design and analyses process. Alternatively, remedies maybe implemented for existing buildings.

Conference Paper

Standards and specifications for the calibration and stability of amateur digital cameras for close-range mapping applications

Photogrammetry is concerned with the accurate derivation of spatial and descriptive information from imagery that can be used in several applications such as mapping, DEM generation, orthophoto production, construction planning, environmental monitoring, structural analysis, 3D visualization, and change detection. The type of cameras traditionally used for high accuracy projects were large format analogue cameras. In recent years, however, the use of digital cameras for photogrammetric purposes has become more prevalent. The switch by some users from analogue to digital cameras has been fuelled by the ease of use, decreasing cost, and increasing resolution of digital cameras. Digital photogrammetric cameras can be classified into several categories: line cameras (e.g., ADS40 from Leica Geosystems), large format frame cameras (e.g., DMC TM from Zeiss/Intergraph), and medium to small-format digital cameras. More recently, amateur medium-format digital cameras (MFDC) and small-format digital cameras (SFDC) are being used in photogrammetric activities (e.g., in conjunction with LiDAR systems, smaller flight blocks, and for close-range photogrammetric applications). The continuing development in the capabilities of digital photogrammetry coupled with users’ needs has spawned new markets in photogrammetric mapping with amateur digital cameras. With the wide spectrum of designs for amateur digital cameras, several issues have surfaced, including the method and quality of camera calibration, as well as long-term stability. This paper addresses these concerns and outlines possible solutions. First, we will start by introducing an automated methodology for an in-door camera calibration. The main objective of such a procedure is to provide mapping companies using these cameras with a simple calibration procedure that requires an easy-to-establish test field. The paper will then discuss the concept of how to evaluate camera stability, which will be followed by the introduction of a set of tools for its evaluation. Following the discussion on calibration and stability analysis, the paper will deal with several related questions: How to develop meaningful standards for evaluating the outcome from the calibration procedure; How to develop meaningful standards for evaluating the stability of the involved camera; Is there a flexibility in choosing the stability analysis tool based on the geo-referencing procedure; Can the stability analysis be used for evaluating the equivalency of different distortion models. Finally, experimental results are then provided for two small format digital cameras.

Conference Paper

Identification of isopropylbiphenyl, alkyl diphenylmethanes, diisopropylnaphthalene, linear alkyl benzenes and other polychlorinated biphenyl replacement compounds in effluents, sediments and fish in the Fox River System, Wisconsin

Five polychlorinated biphenyl replacement dye solvents and a diluent present in carbonless copy paper were identified by gas chromatography/mass spectrometry in the following matrices: effluents from a de-inking–recycling paper mill and a municipal wastewater treatment plant receiving wastewaters from a carbonless copy paper manufacturing plant; sediments; and fish collected near both discharges in the Fox River System, Wisconsin. An isopropylbiphenyl dye solvent mixture included mono-, di- and triisopropylbiphenyls. Also identified were two dye solvent mixtures marketed under the trade name Santosol. Santosol 100 comprised ethyl-diphenylmethanes (DPMs), benzyl-ethyl-DPMs, and dibenzyl-ethyl-DPMs. Similarly, Santosol 150 comprised dimethyl-DPMs, benzyl-dimethyl-DPMs, and dibenzyl-dimethyl-DPMs. Diisopropylnaphthalenes, widely used as a dye solvent in Japan, were identified for the first time in the US environment. sec -Butylbiphenyls and di- sec -butylbiphenyls, likely constituents of a sec -butylbiphenyl dye solvent mixture, were tentatively identified. Linear alkyl benzenes (C 10 to C 13 -LABs) constituted the Alkylate 215 diluent mixture. Although known to occur as minor constituents in linear alkyl sulfonate detergents, LAB residues have not been previously attributed to commercial use of LABs.

Wisconsin

Long-term persistence of horse fecal DNA in the environment makes equids particularly good candidates for non-invasive sampling

Fecal DNA collected noninvasively can provide valuable information about genetic and ecological characteristics. This approach has rarely been used for equids, despite the need for conservation of endangered species and management of abundant feral populations. We examined factors affecting the efficacy of using equid fecal samples for conservation genetics. First, we evaluated two fecal collection methods (paper bag vs. ethanol). Then, we investigated how time since deposition and month of collection impacted microsatellite amplification success and genotyping errors. Between May and November 2014, we collected feral horse fecal samples of known age each month in a feral horse Herd Management Area in western Colorado and documented deterioration in the field with photographs. Samples collected and dried in paper bags had significantly higher amplification rates than those collected and stored in ethanol. There was little difference in the number of loci that amplified per sample between fresh fecal piles and those that had been exposed to the environment for up to 2 months (in samples collected in paper bags). After 2 months of exposure, amplification success declined. When comparing fresh (0–2 months) and old (3–6 months) fecal piles, samples from fresh piles had more matching genotypes across samples, better amplification success and less allelic dropout. Samples defecated during the summer and collected within 2 months of deposition had highest number of genotypes matching among samples, and lowest rates of amplification failure and allelic dropout. Due to the digestive system and amount of fecal material produced by equids, as well as their occurrence in arid ecosystems, we suggest that they are particularly good candidates for noninvasive sampling using fecal DNA.

Colorado

A guide to environmental DNA extractions for non-molecular trained biologists, ecologists, and conservation scientists

Ecologists, biologists, and conservation scientists are increasingly interested in the use of environmental DNA (eDNA) data for research and potentially decision-making. While commercial DNA extraction kits are typically user-friendly and accessible, they may fail to deliver the desired results with inherently complex eDNA samples, necessitating protocol optimization or educated selection of alternative approaches. To this end, knowledge of the basic steps and principles of DNA extractions is essential, but traditional education tracks in ecology, conservation, and environmental management typically do not include in-depth training in molecular methods. The primary objective of this paper is to enable scientists with an ecological background and limited molecular training to understand the four key steps of eDNA isolations, and to use this expertise to their advantage. We describe the purpose of commonly used reagents and chemicals, point out alternatives for each key step, explain the impact of certain choices regarding isolation approaches on DNA integrity and purity, and highlight the possibility of a tailor-made “mix and match” approach. We anticipate that this paper will enable field ecologists to develop a deeper understanding of the mechanisms and chemistry underlying eDNA extractions, thus allowing them to make informed decisions regarding the best eDNA extraction method for their research goals. Our intention is not to provide comprehensive, step-by-step protocols, but to offer guiding principles while highlighting alternative solutions. Finally, we hope that this paper will act as a useful resource to support knowledge transfer and teaching.

Environmental DNA

Validity of using semipermeable membrane devices for determining aqueous concentrations of freely dissolved PAHs

An in-depth review of the recent contribution to this journal by Gustafson and Dickhut [1] prompts us to share our concerns regarding some of their conclusions. The paper presents data comparing three techniques for determining aqueous concentrations of freely dissolved polycyclic aromatic hydrocarbons (PAHs) gas sparging, lipid-containing semipermeable membrane devices (SPMDs) of the U.S. Geological Survey (USGS) design, and filtration followed by sorption using XAD-2 resin. Space limitations force us to limit our comments to problems resulting from an apparent lack of understanding of how SPMDs function. Several recent publications [2–13] have described the theoretical and practical considerations of SPMD usage. Gustafson and Dickhut fail to cite any papers describing SPMDs published after 1992, even though some 18 papers have been published in American and European journals since then and several SPMD studies have been presented at many major meetings.

Environmental Toxicology and Chemistry

An introduction to Criteria for Reporting and Evaluating Exposure Datasets (CREED) for use in environmental assessments

Risks posed by environmental exposure to chemicals are routinely assessed to inform activities ranging from environmental status reporting to authorization and registration of chemicals for commercial uses. Environmental risk assessment generally relies on two key values generated from exposure data and ecotoxicity data. Data sets of measured concentrations of chemicals in environmental matrices, referred to here as exposure data, are widely used to support environmental risk management, decision-making, and reporting, such as for chemical screening, ecological or human health risk assessments, and establishment of guidelines. Practitioners have developed schemes to determine the suitability of ecotoxicity data for specific purposes, focused on evaluating reliability and relevance, but analogous schemes are not available for exposure data. Moreover, regulatory guidance arguably provides less resolution on reporting and evaluating exposure data sets compared to ecotoxicity data. The evaluation of exposure data sets is subject to limitations from variable or unreported data quality objectives and/or from differences in expert judgments, potentially introducing bias and leading to decisions based on flawed and/or inconsistent information. Exposure data sets should be evaluated for reliability and relevance prior to use in environmental assessments. This paper is the first of a four-paper series detailing the outcomes of a Society of Environmental Toxicology and Chemistry technical workshop that has developed Criteria for Reporting and Evaluating Exposure Datasets (CREED). The workshop participants developed practical, systematic criteria for consistent and transparent evaluation of the reliability (quality) and relevance (fitness for purpose) of exposure data. This guidance should apply to many different (unspecified) purposes of assessment. CREED can be used to evaluate existing data sets, but can also inform data generators interested in improving their data collection and reporting to maximize data utility to other users. This first paper details existing frameworks for the evaluation of exposure data sets and demonstrates the need for CREED, drawing from different regulatory assessments, and describes the technical workshop.

Integrated Environmental Assessment and Management

Rodent-repellent studies. III. Advanced studies in the evaluation of chemical repellents

In order to bridge the gap between preliminary screening of chemicals for potential rodent repellency and the application of these compounds to paper cartons, more advanced studies in the evaluation of promising materials have been carried out. These studies have resulted in: (1) a modification of the food acceptance technique which eliminates doubtful compounds and also provides a closer analogy to the ultimate goal, and (2) a method for rapidly testing chemicals incorporated in paper. When the results of these latter tests are expressed as a function of time, it can be shown that a distinct correlation exists between the deterrency exhibited by treated paper and the repellency of treated food.

Journal of the American Pharmaceutical Association

Introduction: Hazard mapping

Twenty papers were accepted into the session on landslide hazard mapping for oral presentation. The papers presented susceptibility and hazard analysis based on approaches ranging from field-based assessments to statistically based models to assessments that combined hydromechanical and probabilistic components. Many of the studies have taken advantage of increasing availability of remotely sensed data and nearly all relied on Geographic Information Systems to organize and analyze spatial data. The studies used a range of methods for assessing performance and validating hazard and susceptibility models. A few of the studies presented in this session also included some element of landslide risk assessment. This collection of papers clearly demonstrates that a wide range of approaches can lead to useful assessments of landslide susceptibility and hazard.

Book chapter

Recycling of nonmetallics

The first factor determining recyclability is the composition of the material itself. Metals, for example, can be reused with little or no loss in quality. Paper and rubber, by this criterion, are less recyclable. Each time paper is recycled, some cellulose fibers are broken. Shorter fibers can mean weaker paper of perceived lower quality and value. Vulcanizing is an irreversible chemical process that precludes recycling rubber in its original form. Both materials may be reused in other applications often of lower value than the original one. To be recyclable, the discarded material must have a collection infrastructure at the source of waste generation, at a central collection site, or at curbside. The recovered material must also have a market. If it is priced noncompetitively or no market exists, if it does not meet specifications, or if it requires special technology investments which cannot be recovered through future sales, the recovered material may be stockpiled or discarded rather than recycled.

Natural Resources Research

To understand coral disease, look at coral cells

Diseases threaten corals globally, but 40 years on their causes remain mostly unknown. We hypothesize that inconsistent application of a complete diagnostic approach to coral disease has contributed to this slow progress. We quantified methods used to investigate coral disease in 492 papers published between 1965 and 2013. Field surveys were used in 65% of the papers, followed by biodetection (43%), laboratory trials (20%), microscopic pathology (21%), and field trials (9%). Of the microscopic pathology efforts, 57% involved standard histopathology at the light microscopic level (12% of the total investigations), with the remainder dedicated to electron or fluorescence microscopy. Most (74%) biodetection efforts focused on culture or molecular characterization of bacteria or fungi from corals. Molecular and immunological tools have been used to incriminate infectious agents (mainly bacteria) as the cause of coral diseases without relating the agent to specific changes in cell and tissue pathology. Of 19 papers that declared an infectious agent as a cause of disease in corals, only one (5%) used microscopic pathology, and none fulfilled all of the criteria required to satisfy Koch’s postulates as applied to animal diseases currently. Vertebrate diseases of skin and mucosal surfaces present challenges similar to corals when trying to identify a pathogen from a vast array of environmental microbes, and diagnostic approaches regularly used in these cases might provide a model for investigating coral diseases. We hope this review will encourage specialists of disease in domestic animals, wildlife, fish, shellfish, and humans to contribute to the emerging field of coral disease.

EcoHealth

The state of the world’s mangroves in the 21st century under climate change

Concerted mangrove research and rehabilitation efforts over the last several decades have prompted a better understanding of the important ecosystem attributes worthy of protection and a better conservation ethic toward mangrove wetlands globally. While mangroves continue to be degraded and lost in specific regions, conservation initiatives, rehabilitation efforts, natural regeneration, and climate range expansion have promoted gains in other areas, ultimately serving to curb the high mangrove habitat loss statistics from the doom and gloom of the 1980s. We highlight those trends in this article and introduce this special issue of Hydrobiologia dedicated to the important and recurring Mangrove and Macrobenthos Meeting. This collection of papers represents studies presented at the fourth such meeting (MMM4) held in St. Augustine, Florida, USA, on July 18–22, 2016. Our intent is to provide a balanced message about the global state of mangrove wetlands by describing recent reductions in net mangrove area losses and highlighting primary research studies presented at MMM4 through a collection of papers. These papers serve not only to highlight on-going global research advancements, but also provide an overview of the vast amount of data on mangrove ecosystem ecology, biology and rehabilitation that emphasizes the uniqueness of the mangrove community.

Hydrobiologia

More on the alleged 1970 geomagnetic jerk

French and United Kingdom workers have published reports describing a sudden change in the secular acceleration, called an impulse or a jerk, which took place around 1970. They claim that this change took place in a period of a year or two and that the sources of the alleged jerk are internal. An earlier paper by this author questioned their method of analysis pointing out that their method of piecemeal fitting of parabolas to the data will always create a discontinuity in the secular acceleration where the parabolas join and that the place where the parabolas join is an a priori assumption and not a result of the analysis. This paper gives a very brief summary of this first paper and then adds additional reasons for questioning the allegation that there was a worldwide sudden jerk in the magnetic field of internal origin around 1970. These new reasons are based largely on new field models which give cubic approximations of the field right through the 1970 timeframe and therefore have no discontinuities in the second derivative (jerk) around 1970. Some recent Japanese work shows several sudden changes in the secular variation pattern which cover limited areas and do not seem to be closely related to each other or to the irregularity noted in the European area near 1970. The secular variation picture which seems to be emerging is one with many local or limited-regional secular variation changes which appear to be almost unrelated to each other in time or space. A worldwide spherical harmonic model including coefficients up to degree 13 could never properly depict such a situation. ?? 1985.

Physics of the Earth and Planetary Interiors

Stability analysis of Eulerian-Lagrangian methods for the one-dimensional shallow-water equations

In this paper stability and error analyses are discussed for some finite difference methods when applied to the one-dimensional shallow-water equations. Two finite difference formulations, which are based on a combined Eulerian-Lagrangian approach, are discussed. In the first part of this paper the results of numerical analyses for an explicit Eulerian-Lagrangian method (ELM) have shown that the method is unconditionally stable. This method, which is a generalized fixed grid method of characteristics, covers the Courant-Isaacson-Rees method as a special case. Some artificial viscosity is introduced by this scheme. However, because the method is unconditionally stable, the artificial viscosity can be brought under control either by reducing the spatial increment or by increasing the size of time step. The second part of the paper discusses a class of semi-implicit finite difference methods for the one-dimensional shallow-water equations. This method, when the Eulerian-Lagrangian approach is used for the convective terms, is also unconditionally stable and highly accurate for small space increments or large time steps. The semi-implicit methods seem to be more computationally efficient than the explicit ELM; at each time step a single tridiagonal system of linear equations is solved. The combined explicit and implicit ELM is best used in formulating a solution strategy for solving a network of interconnected channels. The explicit ELM is used at channel junctions for each time step. The semi-implicit method is then applied to the interior points in each channel segment. Following this solution strategy, the channel network problem can be reduced to a set of independent one-dimensional open-channel flow problems. Numerical results support properties given by the stability and error analyses.

Applied Mathematical Modelling

The acoustic-Doppler current profiler (ADCP): A comprehensive tool for river-reach hydromorphodynamics

This paper introduces the use of acoustic Doppler current profiler (ADCP) measurements as input for the Acoustic Mapping Velocimetry (AMV) method, a technique for characterizing the dynamics of riverine bedforms. The performance of this new approach, ADCP-AMV, is compared with input from a multibeam echosounder through a field study conducted on the Mississippi River (USA). A virtual ADCP tool has been created to support the ADCP-AMV measurements with optimal data density predictions. To the authors’ knowledge, this is the first time ADCP measurements have been used in conjunction with the AMV dune-tracking method. Subsequently, the paper discusses the coupling of ADCP-AMV measurements with ancillary data extracted from the ADCP. These ancillary data are processed using previously developed protocols to characterize hydrodynamics and the suspended sediment distribution in the water column. This paper emphasizes the capability of ADCPs to characterize open-channel river hydromorphodynamic parameters with high spatiotemporal resolution. Recommendations to accurately and efficiently acquire these multi-variable measurements and derived datasets are discussed.

Tennessee

Contaminants from Cretaceous black shale: II. Effect of geology, weathering, climate, and land use on salinity and selenium cycling, Mancos Shale landscapes, southwestern United States

The Cretaceous Mancos Shale (MS) is a known nonpoint source for a significant portion of the salinity and selenium (Se) loads in the Colorado River in the southwestern United States and northwestern corner of Mexico. These two contaminants pose a serious threat to rivers in these arid regions where water supplies are especially critical. Tuttle et al. (companion paper) investigates the cycling of contaminants in a Colorado River tributary watershed (Uncompahgre River, southwestern Colorado) where the MS weathers under natural conditions. This paper builds on those results and uses regional soil data in the same watershed to investigate the impact of MS geology, weathering intensity, land use, and climate on salt and Se storage in and flux from soils on the natural landscape, irrigated agriculture fields, areas undergoing urban development, and wetlands. The size of salinity and Se reservoirs in the MS soils is quantified. Flux calculations show that during modern weathering, natural landscapes cycle salt and Se; however, little of it is released for transport to the Uncompahgre River (10% of the annual salinity and 6% of the annual Se river loads). When irrigated, salinity and Se loads from the MS soil increase (26% and 57% of the river load, respectively), causing the river to be out of compliance with Federal and State Se standards. During 100 years of irrigation, seven times more Se has been removed from agricultural soil than what was lost from natural landscapes during the entire period of pedogenesis. Under more arid conditions, even less salt and Se are expected to be transported from the natural landscape. However, if wetter climates prevail, transport could increase dramatically due to storage of soluble phases in the non-irrigated soil. These results are critical input for water-resource and land-use managers who must decide whether or not the salinity and Se in a watershed can be managed, what sustainable mitigation strategies are possible, and what landscapes should be targeted. The broader implications include providing a reliable approach for quantifying nonpoint-source contamination from MS and other rock units elsewhere that weather under similar conditions and, together with results from our companion paper, address the complex interplay of geology, weathering, climate, and land use on contaminant cycling in the arid Southwest.

Colorado

Applied Geochemistry Special Issue on Environmental geochemistry of modern mining

Environmental geochemistry is an integral part of the mine-life cycle, particularly for modern mining. The critical importance of environmental geochemistry begins with pre-mining baseline characterization and the assessment of environmental risks related to mining, continues through active mining especially in water and waste management practices, and culminates in mine closure. The enhanced significance of environmental geochemistry to modern mining has arisen from an increased knowledge of the impacts that historical and active mining can have on the environment, and from new regulations meant to guard against these impacts. New regulations are commonly motivated by advances in the scientific understanding of the environmental impacts of past mining. The impacts can be physical, chemical, and biological in nature. The physical challenges typically fall within the purview of engineers, whereas the chemical and biological challenges typically require a multidisciplinary array of expertise including geologists, geochemists, hydrologists, microbiologists, and biologists. The modern mine-permitting process throughout most of the world now requires that potential risks be assessed prior to the start of mining. The strategies for this risk assessment include a thorough characterization of pre-mining baseline conditions and the identification of risks specifically related to the manner in which the ore will be mined and processed, how water and waste products will be managed, and what the final configuration of the post-mining landscape will be. In the Fall 2010, the Society of Economic Geologists held a short course in conjunction with the annual meeting of the Geological Society of America in Denver, Colorado (USA) to examine the environmental geochemistry of modern mining. The intent was to focus on issues that are pertinent to current and future mines, as opposed to abandoned mines, which have been the focus of numerous previous short courses. The geochemical challenges of current and future mines share similarities with abandoned mines, but differences also exist. Mining and ore processing techniques have changed; the environmental footprint of waste materials has changed; environmental protection has become a more integral part of the mine planning process; and most historical mining was done with limited regard for the environment. The 17 papers in this special issue evolved from the Society of Economic Geologists’ short course. The relevant geochemical processes encompass the source, transport, and fate of contaminants related to the life cycle of a mine. Contaminants include metals and other inorganic species derived from geologic sources such as ore and solid mine waste, and substances brought to the site for ore processing, such as cyanide to leach gold. Factors, such as mine-waste mineralogy, hydrologic setting, mine-drainage chemistry, and microbial activity, that affect the hydrochemical risks from mining are reviewed by Nordstrom et al. In another paper, Nordstrom discusses baseline characterization at mine sites in a regulatory framework, and emphasizes the influence of mineral deposits in producing naturally elevated concentrations of many trace elements in surface water and groundwater. Surface water quality in mineralized watersheds is influenced by a number of processes that act on daily (diel) cycles and can produce dramatic variations in trace element concentrations as described by Gammons et al. Pre-mining baseline characterization studies should strive to capture the magnitude of these diel variations. Desbarats et al., using a case study of mine drainage from a gold mine, illustrate how elements that commonly occur as negatively charged species (anions) in solution, such as arsenic as arsenate, behave in an opposite fashion than most metals, which occur as positively charged species (cations). Significant improvement in the understanding of factors that influence the toxicity of metals to aquatic organisms in surface water has highlighted the importance of aqueous chemistry, particularly dissolved organic carbon, as described by Smith et al. Stream sediment contamination is another important pathway for affecting aquatic organisms, as reviewed by Besser et al. Understanding and predicting environmental consequences from mining begins with knowing the mineralogy and mineral reactivity of the ore, the wastes, and of secondary minerals formed later. Jamieson et al. review the importance of mineralogical studies in mine planning and remediation. A number of types of site-specific studies are needed to identify environmental risks related to individual mines. Lapakko reviews the general framework of mine waste characterization studies that are integral to the mine planning process. Hageman et al. present a comparative study of several static tests commonly used to characterize mine waste. The mining and ore processing practices employed at a specific mine site will vary on the basis of the commodities being targeted, the geology of the deposit, the geometry of the deposit, and the mining and ore processing methods used. Thus, these factors, in addition to the waste management practices used, can result in a variety of end-member mine waste features, each of which has its own set of challenges. Open pit mines and underground mines require waste rock to be removed to access ore. Waste rock presents unique problems because the rock is commonly mineralized at sub-economic grades and has not been processed to remove potentially problematic minerals, such as pyrite. Amos et al. examine the salient aspects of the geochemistry of waste rock. Mill tailings – the waste material after ore minerals have been removed – are a volumetrically important solid waste at many mine sites. Their fine grain size and the options for their management make their behavior in the environment distinct from that of waste rock. Lindsay et al. describe some of these differences through three case-study examples. Subaqueous disposal of tailings is another option described by Moncur et al. Cyanide leaching for gold extraction is a common method throughout the world. Johnson describes environmental aspects of cyanidation. Uranium mining presents unique environmental challenges, particularly since in-situ recovery has seen widespread use. Campbell et al. review the environmental geochemistry of uranium mining and current research on bioremediation. Ore concentrates from many types of metal mining undergo a pyrometallurgical technique known as smelting to extract the metal. Slag is the result of smelting, and it may be an environmental liability or a valuable byproduct, as described by Piatak et al. Finally, the open pits that result from surface mining commonly reach below the water table. At the end of mining, these pits may fill to form lakes that become part of the legacy of the mine. Castendyk et al., in two papers, review theoretical aspects of the environmental limnology of pit lakes. They also describe approaches that have been used to model pit lake water balance, wall-rock contributions to pit lake chemistry, pit lake water quality, and limnological processes, such as vertical mixing, through the use of three case studies.

Applied Geochemistry