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USGS2025

Multispectral red-edge indices accurately estimate nitrogen content in winter cereal cover crops

Winter cover crops reduce erosion and nutrient runoff from agricultural systems. Although cereal cover crops can decrease field nitrate leaching by 50%–95%, the magnitude of this reduction varies within and between fields, making it challenging to monitor the impact of cover crops on nitrate leaching at large spatial extents. Satellite remote sensing using red-edge bands has been shown to effectively estimate crop nitrogen (N) content (kg ha −1 ) in later growth-stage crops with a closed canopy. In this study, we evaluated 15 spectral indices derived from Sentinel-2 imagery to estimate N concentration (%) and content (kg ha −1 ) of cereal cover crops, using 1627 destructive samples collected from 2018 to 2023 in Maryland. Observed N content ranged from 0.1 to 214.7 kg ha −1 , while N concentration ranged from 0.6% to 5.5%. The 15 indices considered were poor predictors of N concentration (adj. R 2 = 0.089, root mean squared error [RMSE] = 0.802%), but were more successful at measuring N content (biomass × N concentration). Delta red-edge (ΔRE) was the best predictor of N content (adj. R 2 = 0.748, RMSE = 13.10 kg ha −1 from cross-validation with 80% train and 20% test splits iterated 100 times) using samples with imagery collected within ±4 days of destructive sampling ( n = 1110). Our findings indicate that longer red-edge wavelengths (783 and 740 nm) are more suited for estimating N content in cereal cover crops compared to shorter red-edge wavelengths, which have been shown to be more sensitive to biomass. Leave-one-year-out cross-validation demonstrated that the relationship between ΔRE and N content was robust across all four cover crop sampling years included in the study (adj. R 2 = 0.700–0.769, RMSE = 10.70–15.40 kg ha −1 ). Regression model performance improved with the addition of multiple predictors, including biomass (estimated from Normalized Difference Vegetation Index), weather variables (adj. R 2 = 0.765, RMSE = 12.37 kg ha −1 ), management variables (species, season, adj. R 2 = 0.772, and RMSE = 12.13 kg ha −1 ), and biophysical variables (height, fractional ground cover, adj. R 2 = 0.818, and RMSE = 10.29 kg ha −1 ). These findings demonstrate the feasibility of quantifying N content in cereal cover crops using a red-edge-based spectral index across large geographic extents and indicate the inclusion of additional predictors, such as weather and management data, improves model accuracy. This work has implications for quantifying reductions in N leaching associated with cover crops, aiding in policymaking and evaluation of conservation programs that impact water bodies such as Chesapeake Bay.

Maryland↗

USGS2020

Sample mounting for organic petrology: No thermal effects from transient exposure to elevated temperatures

For sample mounting, organic petrology laboratories typically use cold-setting epoxy-resin (e.g., 40 °C, used by Oklahoma Geological Survey, OGS) or heat-setting thermoplastic (e.g., 180 °C, used by U.S. Geological Survey, USGS). Previous workers have suggested a systematic huminite/vitrinite reflectance (VR o ) increase was associated with the thermoplastic preparation process, relative to epoxy mounting, which was possibly attributed to moisture loss from organic matter due to the transient high temperatures of plastic mounting. In this study, we evaluated thermal effects to low thermal maturity organic matter from transient exposure to elevated temperatures. A subbituminous coal sample was subjected to long-term (4 to 38 weeks) exposure to temperatures of 85 to 120 °C and afterward evaluated by multiple approaches to test thermal advance [elemental analyses, Rock-Eval pyrolysis, Fourier transform infrared spectroscopy (FTIR), nuclear magnetic resonance (NMR), pyrolysis gas chromatography, and petrographic analyses, including huminite/vitrinite reflectance and spectral fluorescence], all of which showed no detectable systematic (statistically insignificant) changes between the original sample and its heat-treated products. We also compared huminite/vitrinite reflectance of six low thermal maturity samples (those most likely to react to transient heating) mounted via both cold-setting epoxy-resin and heat-setting thermoplastic. Results indicate measured VR o of a sample prepared by one mounting process was within the standard deviation of reflectance for the same sample prepared via the other process. Moreover, VR o results were not systematically higher in thermoplastic mounts. Contrary to previous work, these results suggest thermoplastic mounting or other transient exposure to elevated temperatures does not impact thermal maturity estimates from reflectance measurement for low thermal maturity organic samples. Furthermore, the average interlaboratory difference in measured VR o (between OGS and USGS) for the same sample prepared by either epoxy-resin or thermoplastic mounting was 0.038%, about double the average difference between VR o for the same sample prepared via epoxy-resin versus thermoplastic in a single laboratory (0.024%). This result indicates interlaboratory variability impacts VR o measurement reproducibility to the extent that systematic differences could not be observed between thermoplastic and cold-setting sample preparation approaches, even if such differences were present.

International Journal of Coal Geology↗

USGS1986

In situ and laboratory geotechnical tests of the Pierre Shale near Hayes, South Dakota — A characterization of engineering behavior

A geotechnical investigation of the Pierre Shale near Hayes, South Dakota, was conducted by the U.S. Geological Survey as a basis for evaluating problems in deep excavations into that formation. The physical and mechanical properties of the shale were determined through use of core holes drilled to a maximum depth of 184 m. In situ borehole determinations included a gravimeter survey, pressuremeter testing, thermal profile measurements, and borehole velocity measurements. Onsite and offsite laboratory measurements included rebound measurements, sonic velocity measurements of shear and primary waves, X-ray mineralogy and major element determinations, size analyses, fracture analyses, fabric analyses, and determination of thermal properties.Below 15–22 m, the shale is an unweathered, saturated, overconsolidated, underpressured clay shale with a clay-mineral content ranging between 50 and 100%, dominantly composed of mixed-layer illitic smectites. The physical and mechanical properties vary widely. The variation is related to the clay mineral content (especially in bentonite zones), a large transverse mechanical anisotropy, and zones of fractures and microfractures, which may result from rebound caused by erosion. These may contribute to slope instability over large areas. The thermal and mechanical properties change markedly if the shale is permitted to dry out. The state of stress and overconsolidation appear to be functions of the depositional and erosional history of the deposit. Both are markedly affected by the large fracture zones. The properties of the clay shale indicate problems that may be encountered in excavation and use of deep underground facilities. Key words : anisotropy, characterization, clay shale, consolidation state, physical properties, rebound, relaxation, stress state, thermal properties.

South Dakota↗

USGS2023

Grizzly bear responses to restrictions of recreation in Yellowstone National Park

Avoiding humans will be more difficult and energetically costly for animals as outdoor recreation increases and people venture farther into wildland areas that provide high-quality habitat for wildlife. Restricting human access can be an attractive management tool to mitigate effects of human recreation activities on wildlife; however, the efficacy of such measures is rarely assessed. In 1982, Yellowstone National Park identified areas important to grizzly bears ( Ursus arctos ) to help protect critical grizzly bear habitat and reduce the likelihood of human injuries by bears. Referred to as bear management areas (BMAs), human access is restricted in these areas for 2–8 months each year, with timing and type of restrictions varying by area. We examined 2 datasets to evaluate grizzly bear selection of BMAs and differences of bear density in BMAs and non-BMAs. First, we used 17 years of recent global positioning system telemetry data for grizzly bears to assess their selection of BMAs during periods when human access was allowed, and when access was restricted. We used step-selection functions to test the hypothesis that bears spend time in places that allow them to avoid people and select quality food sources. There was support that grizzly bears differentially select for BMAs regardless of whether human access was restricted at the time, compared with areas outside BMAs, and that selection changed with sex and season. Only males during the summer and hyperphagic seasons changed their selection of BMAs based on whether access restrictions were in place, and overall, male bears preferred unrestricted BMAs (BMAs without restrictions in place). Females preferentially selected BMAs regardless of whether the area had access restrictions in place only during the mating season. Individuals varied widely in their preference for BMAs and access restrictions. Bears likely choose to spend time in BMAs based on available food resources rather than restrictions to human access. Supporting this interpretation, our analyses indicated that a greater proportion of BMA in an area was associated with higher densities of grizzly bear. Thus, restrictions to human access likely help reduce the potential for human–bear interactions, accomplishing one of the original objectives for establishing the BMAs.

Idaho, Montana, Wyoming↗

USGS2010

Interpretation and analysis of planetary structures

Structural geology is an integral part of planetary science. Planetary structures provide the framework for determining the character and sequence of crustal deformation while simultaneously establishing the observational basis required to test geodynamic hypotheses for the deformation of planetary and satellite lithospheres. The availability of datasets that record spatial and topographic information with a resolution that matches or, in many cases, exceeds, what is available for Earth-based studies permits the deformation of several planets and satellites to be investigated down to the local or outcrop scales. The geometry and kinematics of common planetary structures such as joints, igneous dikes, deformation bands, faults, and folds can be determined with confidence from their distinctive morphologic and topographic signatures, enabling the structural histories and deformation magnitudes to be determined. Segmentation, displacement profiles, relay ramps, footwall anticlines, displacement-controlled depocenters, and other well-known characteristics of terrestrial normal fault and graben systems reveal the sequence and processes of fault growth in numerous planetary examples. Systems of thrust faults having both blind and surface-breaking components are important elements on several bodies including Mercury, the Moon, and Mars. Strike-slip faults have been identified on bodies including Mars and Europa with oblique extension found on Ganymede. Using field-based studies of Earth-based structures as a guide, planetary structures provide a means to explore and evaluate the causative stresses. Despite the wide range in structural styles across the solar system, plate tectonics is recognized only on the Earth, with the other planets and satellites deforming in the absence of large-scale horizontal motions and attendant plate recycling.

Journal of Structural Geology↗

USGS2012

Reversion to virulence and efficacy of an attenuated canarypox vaccine in Hawai'i 'Amakihi ( Hemignathus Virens )

Vaccines may be effective tools for protecting small populations of highly susceptible endangered, captive-reared, or translocated Hawaiian honeycreepers from introduced Avipoxvirus , but their efficacy has not been evaluated. An attenuated Canarypox vaccine that is genetically similar to one of two passerine Avipoxvirus isolates from Hawai‘i and distinct from Fowlpox was tested to evaluate whether Hawai‘i ‘Amakihi ( Hemignathus virens ) can be protected from wild isolates of Avipoxvirus from the Hawaiian Islands. Thirty-one (31) Hawai‘i ‘Amakihi were collected from high-elevation habitats on Mauna Kea Volcano, where pox transmission is rare, and randomly divided into two groups. One group was vaccinated with Poximune C®, whereas the other group received a sham vaccination with sterile water. Four of 15 (27%) vaccinated birds developed life-threatening disseminated lesions or lesions of unusually long duration, whereas one bird never developed a vaccine-associated lesion or “take.” After vaccine lesions healed, vaccinated birds were randomly divided into three groups of five and challenged with either a wild isolate of Fowlpox (FP) from Hawai‘i, a Hawai‘i ‘Amakihi isolate of a Canarypox-like virus (PV1), or a Hawai‘i ‘Amakihi isolate of a related, but distinct, passerine Avipoxvirus (PV2). Similarly, three random groups of five unvaccinated ‘Amakihi were challenged with the same virus isolates. Vaccinated and unvaccinated ‘Amakihi challenged with FP had transient infections with no clinical signs of infection. Mortality in vaccinated ‘Amakihi challenged with PV1 and PV2 ranged from 0% (0/5) for PV1 to 60% (3/5) for PV2. Mortality in unvaccinated ‘Amakihi ranged from 40% (2/5) for PV1 to 100% (5/5) for PV2. Although the vaccine provided some protection against PV1, both potential for vaccine reversion and low efficacy against PV2 preclude its use in captive or wild honeycreepers.

Hawaii↗

USGS2008

Decadal-scale changes of nitrate in ground water of the United States, 1988-2004

This study evaluated decadal-scale changes of nitrate concentrations in groundwater samples collected by the USGS National Water-Quality Assessment Program from 495 wells in 24 well networks across the USA in predominantly agricultural areas. Each well network was sampled once during 1988-1995 and resampled once during 2000-2004. Statistical tests of decadal-scale changes of nitrate concentrations in water from all 495 wells combined indicate there is a significant increase in nitrate concentrations in the data set as a whole. Eight out of the 24 well networks, or about 33%, had significant changes of nitrate concentrations. Of the eight well networks with significant decadal-scale changes of nitrate, all except one, the Willamette Valley of Oregon, had increasing nitrate concentrations. Median nitrate concentrations of three of those eight well networks increased above the USEPA maximum contaminant level of 10 mg L-1. Nitrate in water from wells with reduced conditions had significantly smaller decadal-scale changes in nitrate concentrations than oxidized and mixed waters. A subset of wells had data on ground water recharge date; nitrate concentrations increased in response to the increase of N fertilizer use since about 1950. Determining ground water recharge dates is an important component of a ground water trends investigation because recharge dates provide a link between changes in ground water quality and changes in land-use practices. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Journal of Environmental Quality↗

USGS2014

Field-scale sulfur hexafluoride tracer experiment to understand long distance gas transport in the deep unsaturated zone

A gas-tracer test in a deep arid unsaturated zone demonstrates that standard estimates of effective diffusivity from sediment properties allow a reasonable first-cut assessment of gas contaminant transport. Apparent anomalies in historic transport behavior at this and other waste disposal sites may result from factors other than nonreactive gas transport properties. A natural gradient SF 6 tracer experiment provided an unprecedented evaluation of long distance gas transport in the deep unsaturated zone (UZ) under controlled (known) conditions. The field-scale gas tracer test in the 110-m-thick UZ was conducted at the U.S. Geological Survey’s Amargosa Desert Research Site (ADRS) in southwestern Nevada. A history of anomalous (theoretically unexpected) contaminant gas transport observed at the ADRS, next to the first commercial low-level radioactive waste disposal facility in the United States, provided motivation for the SF 6 tracer study. Tracer was injected into a deep UZ borehole at depths of 15 and 48 m, and plume migration was observed in a monitoring borehole 9 m away at various depths (0.5–109 m) over the course of 1 yr. Tracer results yielded useful information about gas transport as applicable to the spatial scales of interest for off-site contaminant transport in arid unsaturated zones. Modeling gas diffusion with standard empirical expressions reasonably explained SF 6 plume migration, but tended to underpredict peak concentrations for the field-scale experiment given previously determined porosity information. Despite some discrepancies between observations and model results, rapid SF 6 gas transport commensurate with previous contaminant migration was not observed. The results provide ancillary support for the concept that apparent anomalies in historic transport behavior at the ADRS are the result of factors other than nonreactive gas transport properties or processes currently in effect in the undisturbed UZ.

California, Nevada↗

USGS2010

Estimates of density, detection probability, and factors influencing detection of burrowing owls in the Mojave Desert

We estimated relative abundance and density of Western Burrowing Owls (Athene cunicularia hypugaea) at two sites in the Mojave Desert (200304). We made modifications to previously established Burrowing Owl survey techniques for use in desert shrublands and evaluated several factors that might influence the detection of owls. We tested the effectiveness of the call-broadcast technique for surveying this species, the efficiency of this technique at early and late breeding stages, and the effectiveness of various numbers of vocalization intervals during broadcasting sessions. Only 1 (3) of 31 initial (new) owl responses was detected during passive-listening sessions. We found that surveying early in the nesting season was more likely to produce new owl detections compared to surveying later in the nesting season. New owls detected during each of the three vocalization intervals (each consisting of 30 sec of vocalizations followed by 30 sec of silence) of our broadcasting session were similar (37, 40, and 23; n 30). We used a combination of detection trials (sighting probability) and double-observer method to estimate the components of detection probability, i.e., availability and perception. Availability for all sites and years, as determined by detection trials, ranged from 46.158.2. Relative abundance, measured as frequency of occurrence and defined as the proportion of surveys with at least one owl, ranged from 19.232.0 for both sites and years. Density at our eastern Mojave Desert site was estimated at 0.09 ?? 0.01 (SE) owl territories/km 2 and 0.16 ?? 0.02 (SE) owl territories/km 2 during 2003 and 2004, respectively. In our southern Mojave Desert site, density estimates were 0.09 ?? 0.02 (SE) owl territories/km 2 and 0.08 ?? 0.02 (SE) owl territories/km 2 during 2004 and 2005, respectively. ?? 2010 The Raptor Research Foundation, Inc.

Journal of Raptor Research↗

USGS2022

An evaluation of transmitter effects on adult and juvenile Common Terns using leg-loop harness attachments

Marking birds with transmitters allows for the collection of data that are critical for fully understanding avian life history, but researchers must also be confident that performing such studies is as safe as possible for transmittered individuals. While much could be learned from tracking juveniles across dependency periods and first migration, doing so would require a harness-based attachment method which has not been evaluated on any species of juvenile tern. Therefore, we monitored the reproductive success and behavior of adult Common Terns ( Sterna hirundo ) and the growth and behavior of juvenile Common Terns after attaching transmitters to adults and juveniles with leg-loop harnesses made of elastic cord. We found that transmittered adults had similar reproductive success to untransmittered controls (hatching success for nests of transmittered adults = 0.553; nests of control adults = 0.665). Transmittered adults also expressed minimal behavioral differences from untransmittered controls when the groups were compared via paired treatment-control nest observations along with observations away from the nest. Transmittered juveniles had similar fledging success and growth rates to untransmittered control juveniles (fledging success for transmittered juveniles = 0.766; control juveniles = 0.817). Transmittered juveniles exhibited slight differences in behavior from controls, with increased rates of preening, although these differences did not appear to be detrimental. Finally, monitoring efforts during the breeding season following transmitter deployment found no difference in the return rate, nesting attempt rate, or hatching success rate based on treatment (P > 0.05). However, despite evidence of an individual retaining its transmitter into fall migration, no individuals retained their transmitters when resighted the following breeding season. While our results show that leg-loop harnesses made of elastic cord present a potential option for transmitter attachment to both adult and juvenile Common Terns, additional testing could provide further insight into potential long-term impacts.

Journal of Field Ornithology↗

USGS2000

Condition bias of hunter-shot ring-necked ducks exposed to lead

We evaluated the condition bias hypothesis for ring-necked ducks ( Aythya collaris ) exposed to lead by testing the null hypothesis that ducks shot by hunters do not differ in physiological condition from those collected randomly from the same location. After adjusting for structural body size and log(e) concentration of blood lead, we found that overall body condition differed significantly between collection types and age classes, and marginally between sexes. Ingesta-free body mass of ring-necked ducks sampled randomly averaged 8.8% greater than those shot over decoys, and 99% of this difference was accounted for by lipid reserves. Ingesta, ash, and protein did not differ between collection types; however, after-hatching-year (AHY) birds had 5.1% more ash and 4.8% more protein than did hatching-year (HY) birds. The only sex difference was that males had 4.1% more protein than did females. Ingesta-free body mass, lipids, and protein were negatively related to concentration of blood lead. Collection type-by-concentration of blood lead and age-by-sex-by-concentration of blood lead interactions were not significant. To the extent that lead pellets persist as a cause of disease or mortality, waterfowl biologists should account for lead exposure as a possible source of condition bias when estimating population parameters and modeling survival of ring-necked ducks and other waterfowl species prone to ingest lead. These findings further underscore the problem that ingested lead shotgun pellets pose for waterfowl.

Louisiana↗

USGS2017

No evidence of infection or exposure to Highly Pathogenic Avian Influenzas in peridomestic wildlife on an affected poultry facility

We evaluated the potential transmission of avian influenza viruses (AIV) in wildlife species in three settings in association with an outbreak at a poultry facility: 1) small birds and small mammals on a poultry facility that was affected with highly pathogenic AIV (HPAIV) in April 2015; 2) small birds and small mammals on a nearby poultry facility that was unaffected by HPAIV; and 3) small birds, small mammals, and waterfowl in a nearby natural area. We live-captured small birds and small mammals and collected samples from hunter-harvested waterfowl to test for active viral shedding and evidence of exposure (serum antibody) to AIV and the H5N2 HPAIV that affected the poultry facility. We detected no evidence of shedding or specific antibody to AIV in small mammals and small birds 5 mo after depopulation of the poultry. We detected viral shedding and exposure to AIV in waterfowl and estimated approximately 15% viral shedding and 60% antibody prevalence. In waterfowl, we did not detect shedding or exposure to the HPAIV that affected the poultry facility. We also conducted camera trapping around poultry carcass depopulation composting barns and found regular visitation by four species of medium-sized mammals. We provide preliminary data suggesting that peridomestic wildlife were not an important factor in the transmission of AIV during the poultry outbreak, nor did small birds and mammals in natural wetland settings show wide evidence of AIV shedding or exposure, despite the opportunity for exposure.

Journal of Wildlife Diseases↗

USGS2024

Structure and morphology of chars and activated carbons obtained from thermal treatment of coal and biomass origin materials, including their wastes: Results from the ICCP Microscopy of Carbon Materials Working Group

This paper describes the evaluation of petrographic textures in char and activated carbon derived from coal, coal by-products and biomass, formed during carbonization and activation processes. This work represents the results of interlaboratory exercises from 2016 to 2022 of the Microscopy of Carbon Materials Working Group in Commission III of the International Committee for Coal and Organic Petrology. The interlaboratory exercises were run on photomicrograph samples. For textural characterization of carbon materials, the existing American Society for Testing and Materials (ASTM) classification system for metallurgical coke was applied. Morphological differences were evaluated in 29 carbon material types, including 22 char samples, and 7 activated carbon (AC) samples obtained experimentally using conventional direct/indirect and microwave heating technologies. This approach gives an extended view on the identification of microporous carbons, and how a certain heat treatment develops a certain optical texture and structure in a raw material. The requested evaluation of carbon materials was related to their porosity, origin, extent, and characteristics, which are particular to each carbon material type. Because carbon matrices can form a wide range of optical textures during heat treatment it is important to demonstrate which carbon occurrences will have a crucial role in industrial applications dominated by adsorption phenomena. The interlaboratory exercises included 17 participants from 14 laboratories. Four sets of digital black and white and colour photomicrographs were distributed, which in total comprised 184 fields of different types of carbon material. The results were evaluated based on four levels: (i) optical texture (isotropic/anisotropic), (ii) optical type and size (punctiform, mosaic, fiber, ribbon, domain), iii) morphology (porous, non-porous/massive), and (iv) particle origin (precursor type). The statistical method applied to evaluate the results was based on “raw agreement indices”. Comparative analyses of the average values of the level of overall agreement showed homogeneity in the results, the mean value was 89%, with a minimum value of 87% and a maximum value of 91% for those who participated in at least three out of four exercises.

International Journal of Coal Geology↗

USGS2026

Testing the efficacy of industrial mitigation measures for caribou in the Arctic

1. Mitigation measures are commonly employed to reduce the negative effects of industrial development on wildlife but are not often evaluated for their efficacy. For example, oil fields in the Arctic typically incorporate design features intended to increase permeability for migratory, barren-ground caribou ( Rangifer tarandus) , even though there is limited empirical evidence of the effectiveness of some of these features. 2. Given expected increases in energy development in the North American Arctic, we examined whether two mitigation measures commonly used for migratory caribou, elevating pipelines and separating roads and pipelines, were effective at increasing the probability caribou would cross infrastructure. 3. We conducted our investigation on adult female caribou in the Central Arctic Herd of Alaska during summer, analyzing movement data from telemetry collars (2015-2020) in conjunction with spatial data on oil field infrastructure. To evaluate whether caribou would cross infrastructure as a function of the mitigation measures, we employed a generalized additive modeling framework capable of detecting non-linear and threshold responses. 4. We found that caribou were more likely to cross a pipeline when the nearest pipeline was elevated (≥1.9-m), a result that supports current mitigation recommendations. We also found that caribou were more likely to cross both a road and pipeline when they were directly adjacent to one another, as opposed to being spatially separated, a result that contradicts recommended mitigation strategies. 5. Synthesis and applications . As new energy projects are designed and implemented in environments around the globe, it is important to ensure that mitigation efforts for wildlife are scientifically validated for their efficacy. In the North American Arctic, such efforts will be critical for minimizing the impacts of expanding industrial development on migratory caribou and on the human communities that rely on them for subsistence.

Alaska↗

USGS2022

Structured decision making to rank North American Wetland Conservation Act proposals within joint venture regions

The North American Wetlands Conservation Act (16 U.S.C. 4401-4412) provided funding and administration for wetland management and conservation projects. The North American Wetland Conservation Fund, enabled in 1989 with the Act, provides financial resources. Resource allocation decisions are based, in part, on regional experts, particularly migratory bird Joint Ventures (JVs) (i.e., partnerships for cooperative planning and coordinated management of the continent’s waterfowl populations and habitats). The JVs evaluate funding proposals submitted with their respective regions each year and make funding recommendations to decision makers. Proposal evaluation procedures differ among JVs, however, it could be helpful to consider a transparent, repeatable, and data-driven framework for prioritization within regions. We used structured decision making and linear additive value models for ranking proposals within JV regions. We used two JVs as case studies and constructed two different value models using JV-specific objectives and weights. The framework was developed through a collaborative process with JV staff and stakeholders. Models were written in Microsoft Excel. To test these models, we used six NAWCA proposals submitted to the Upper Mississippi / Great Lakes Joint Venture in 2016 and seven proposals submitted to the Gulf Coast Joint Venture in 2017. We compared proposal ranks assigned by the value model to ranks assigned by each JV’s management board. Ranks assigned by the value model differed from ranks assigned by the board for the Upper Mississippi / Great Lakes Joint Venture, but not for the Gulf Coast Joint Venture. However, ranks from the value model could change markedly with different objective weights and value functions. The weighted linear value model was beneficial for ranking NAWCA proposals because it allows JVs to treat the ranking as a multiple objective problem and tailor the ranking to their specific regional concerns. We believe a structured decision making approach could be adapted by JV staff to facilitate a systematic and transparent process for proposal ranking by their management boards.

Journal of Fish and Wildlife Management↗

USGS2023

Successful detection of Delta and Omicron Variants of SARS-CoV-2 by veterinary diagnostic laboratory participants in an interlaboratory comparison exercise

Background Throughout the COVID-19 pandemic, veterinary diagnostic laboratories have tested diagnostic samples for SARS-CoV-2 both in animals and over 6 million human samples. An evaluation of the performance of those laboratories is needed using blinded test samples to ensure that laboratories report reliable data to the public. This interlaboratory comparison exercise (ILC3) builds on 2 prior exercises to assess whether veterinary diagnostic laboratories can detect Delta and Omicron variants spiked in canine nasal matrix or viral transport medium. Methods The ILC organizer was an independent laboratory that prepared inactivated Delta variant at levels of 25 to 1000 copies per 50 µL of nasal matrix for blinded analysis. Omicron variant at 1000 copies per 50 µL of transport medium was also included. Feline infectious peritonitis virus (FIPV) RNA was used as a confounder for specificity assessment. Fourteen test samples were prepared for each participant. Participants used their routine diagnostic procedures for RNA extraction and real-time reverse transcriptase-PCR. Results were analyzed according to International Organization for Standardization (ISO) 16140–2:2016. Results Overall, laboratories demonstrated 93% detection for Delta and 97% for Omicron at 1000 copies per 50 µL. Specificity was 97% for blank samples and 100% for blank samples with FIPV. No differences in Cycle Threshold (Ct) values were significant for samples with the same virus levels between N1 and N2 markers, nor between the 2 variants. Conclusions The results indicated that all ILC3 participants were able to detect both Delta and Omicron variants. The canine nasal matrix did not significantly affect SARS-CoV-2 detection.

Journal of Applied Laboratory Medicine↗

USGS2016

Pb-Sr isotopic and geochemical constraints on sources and processes of lead contamination in well waters and soil from former fruit orchards, Pennsylvania, USA: A legacy of anthropogenic activities

Isotopic discrimination can be an effective tool in establishing a direct link between sources of Pb contamination and the presence of anomalously high concentrations of Pb in waters, soils, and organisms. Residential wells supplying water containing up to 1600 ppb Pb to houses built on the former Mohr orchards commercial site, near Allentown, PA, were evaluated to discern anthropogenic from geogenic sources. Pb (n = 144) and Sr (n = 40) isotopic data and REE (n = 29) data were determined for waters from residential wells, test wells (drilled for this study), and surface waters from pond and creeks. Local soils, sediments, bedrock, Zn-Pb mineralization and coal were also analyzed (n = 94), together with locally used Pb-As pesticide (n = 5). Waters from residential and test wells show overlapping values of 206 Pb/ 207 Pb, 208 Pb/ 207 Pb and 87 Sr/ 86 Sr. Larger negative Ce anomalies (Ce/Ce*) distinguish residential wells from test wells. Results show that residential and test well waters, sediments from residential water filters in water tanks, and surface waters display broad linear trends in Pb isotope plots. Pb isotope data for soils, bedrock, and pesticides have contrasting ranges and overlapping trends. Contributions of Pb from soils to residential well waters are limited and implicated primarily in wells having shallow water-bearing zones and carrying high sediment contents. Pb isotope data for residential wells, test wells, and surface waters show substantial overlap with Pb data reflecting anthropogenic actions (e.g., burning fossil fuels, industrial and urban processing activities). Limited contributions of Pb from bedrock, soils, and pesticides are evident. High Pb concentrations in the residential waters are likely related to sediment build up in residential water tanks. Redox reactions, triggered by influx of groundwater via wells into the residential water systems and leading to subtle changes in pH, are implicated in precipitation of Fe oxyhydroxides, oxidative scavenging of Ce(IV), and desorption and release of Pb into the residential water systems. The Pb isotope features in the residences and the region are best interpreted as reflecting a legacy of industrial Pb present in underlying aquifers that currently supply the drinking water wells.

Pennsylvania↗

USGS2020

Bark beetle-affected forests provide elk only a marginal refuge from hunters

For nearly 2 decades, the forests of the Rocky Mountains in the United States experienced a bark-beetle ( Dendoctronus ponderosae ) epidemic. The number of dead and falling trees from this epidemic likely will affect how elk ( Cervus canadensis ) and hunters use the forest and their interactions. Downed trees potentially create a component of refuge habitat that could affect the effectiveness of hunting to regulate abundance of growing elk populations. We evaluated how forests affected by bark beetles in south-central Wyoming, USA, influenced resource selection of 50 female elk and 374 hunters in 2012–2016, and interactions between elk and hunters. We employed global positioning system (GPS) technology on elk and hunters, and developed a satellite-derived land classification specifically depicting beetle-affected forests. We tested the predictions that elk would increase use of beetle-killed areas from summer to the hunting season, and that hunters would avoid beetle-killed areas regardless of elk use. Elk increased use of beetle-killed areas during hunting seasons as did hunters during the archery season; however, during the rifle season, hunters avoided beetle-killed areas. Nevertheless, during the rifle season, areas of beetle-kill with a high probability of elk occurrence dampened the aversion hunters had towards beetle-killed areas. Therefore, in contrast to our expectations, forests that have been altered by the bark-beetle epidemic may only function marginally as a refuge for elk. Our study area was at the beginning of the tree-fall phase (i.e., ~3–7 yr after peak infestation) of the bark-beetle epidemic; thus, future research efforts should focus on how a continued increase in downed trees will influence interactions between elk and hunters. At current levels of tree fall, however, beetle-kill should not limit the ability of managers to regulate elk herds through harvest.

Wyoming↗