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USGS1995

Pesticides in the atmosphere; distribution, trends, and governing factors

A comprehensive review of existing literature on the occurrence and distribution of pesticides in the atmosphere of the United States and adjoining Canadian provinces showed that the atmosphere is an important part of the hydrologic cycle that acts to distribute and deposit pesticides in areas far removed from their application sites. A compilation of existing data shows that pesticides have been detected in the atmosphere throughout the nation. Most of the available information on pesticides in the atmosphere is from small-scale, short-term studies that seldom lasted more than one year. Only two national-scale, multi-year studies were done since the late 1960's that analyzed for a wide variety of pesticides in air that were in current use at the time. Another large-scale study was done during 1990-91, but was limited to the midwestern and northeastern United States and only analyzed for two classes of herbicides in wet deposition. Most of the pesticides analyzed for were detected in either air or rain, and represent about 25 percent of the total number of insecticides, herbicides, and fungicides in current use. The geographical distribution of studies, and the type of sampling and analysis were highly variable with most of the historical study efforts concentrated in the Great Lakes area and California. Air and rain were the main atmospheric matrices sampled, but pesticides were also detected in fog and snow. Reported pesticide concentrations in air and rain were frequently positively correlated to their regional agricultural use. Deviations from this relation could usually be explained by non-agricultural use of pesticides, sampling and analytical difficulties, and environmental persistence. High concentrations of locally used pesticides were found to occur seasonally, usually in conjunction with spring planting of row crops and warm temperatures, but high concentrations also occurred during winter months in those areas where dormant orchards were sprayed. The environmentally more persistent pesticides were detected in the atmosphere at low concen- trations throughout the year. Deposition of airborne pesticides can have significant effects on water quality, but neither the nature of nor the magnitude of these effects can be determined with certainty on the basis of the type of data currently available. The lack of consistent, long-term regional and national monitoring and study of pesticides in atmospheric matrices severely limits assessment capability.

Open-File Report↗

USGS1996

Effects of pesticides on owls in North America

A literature review of the effects of pesticides on owls in North America showed that relatively few studies have been undertaken. Owls used in experiments seem as sensitive to organochlorine pesticides (OCs) as other birds of prey, but wild owls experienced few serious problems, primarily because they were exposed to lower residues in their predominately mammalian or invertebrate prey. For example, the great horned owl ( Bubo virginianus ) and the common barn-owl ( Tyto alba ) neither experienced marked changes in mortality or recruitment rates nor was there any evidence of population decreases even during the maximum period of OC pesticide use. Also, eggshell thinning was not a widespread problem. There were adverse effects on individual owls including verified records of 74 owls of six species that died from secondary or tertiary poisoning related to strychnine, organochlorines, anticholinesterases (antiChEs) and anticoagulants in 16 states within the U.S. and one province in Canada. Most of the pesticide-related deaths occurred during the 1980s, although this probably does not represent a true temporal distribution. Verified mortalities of owls probably represent a small fraction of the actual number that died from pesticides. Incidence of mortality seems biased geographically toward areas such as New York that have active ecotoxicological programs. Burrowing owl ( Speotyto cunicularia ) populations currently are decreasing throughout much of the range in the U.S. and Canada. Studies in Canada indicate that antiChE pesticides, particularly carbofuran, were responsible for the declines there.

Journal of Raptor Research↗

USGS2006

The toxicological geochemistry of Earth materials: An overview of processes and the interdisciplinary methods used to understand them

A broad spectrum of earth materials have been linked to, blamed for, and/or debated as sources for disease. In some cases, the links are clear. For example, excessive exposures to mineral dusts have long been recognized for their role in diseases such as: asbestosis, mesothelioma, and lung cancers (asbestos); silicosis and lung cancer (silica dusts); and coal-workers pneumoconiosis (coal dust). Lead poisoning, particularly in toddlers and young children, has been conclusively linked to involuntary ingestion of soils or other materials contaminated with lead-rich paint particles, leaded gasoline combustion byproducts, and some types of lead-rich mine wastes or smelter particulates. Waters with naturally elevated arsenic contents are common in many regions of the globe, and consumption of these waters has been documented as the source of arsenic-related diseases affecting thousands of people in south Asia and other regions. Exposure to dusts or soils containing pathogens has been documented as the cause of regionally common diseases such as valley fever (coccidioidomycosis) and much rarer diseases such as anthrax. Links between many other earth materials and specific diseases, although suspected, are less clear or are debated. For example, it has been suggested that geographic clusters of diseases such as leukemia are related to exposures to waters or atmospheric particulates containing organic or metal contaminants; however, for many clusters the exact causal relationships between disease and environmental exposure are difficult to prove conclusively. Even for many diseases in which the causal relationship is clear, such as in asbestosis and mesothelioma triggered by asbestos exposure, the minimum exposures needed to trigger disease, the influence of genetic factors, and the exact mechanisms of toxicity are still incompletely understood and are the focus of considerable debate within the public health community. Hence, understanding the health effects resulting from occupational and environmental exposures to a wide variety of earth materials remains a very active and fruitful area of research.

Reviews in Mineralogy and Geochemistry↗

USGS1999

Review of Phosphorus Control Measures in the United States and Their Effects on Water Quality

Historical information on phosphorus loadings to the environment and the effect on water quality are summarized in this report, which was produced as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program. Phosphorus is a water-quality constituent of concern because it is often the limiting nutrient responsible for accelerated eutrophication in water bodies. Phosphorus inputs to the environment have increased since 1950 as the use of phosphate fertilizer, manure, and phosphate laundry detergent increased; however, the manufacture of phosphate detergent for household laundry was ended voluntarily in about 1994 after many States had established phosphate detergent bans. Total phosphorus concentrations in raw wastewater effluent contained about 3 milligrams per liter of total phosphorus during the 1940's, increased to about 11 milligrams per liter at the height of phosphate detergent use (1970), and have currently declined to about 5 milligrams per liter. However, in some cases, tertiary wastewater treatment still is needed to effectively improve water quality of streams. Downward trends in phosphorus concentrations since 1970 have been identified in many streams, but median total phosphorus concentrations still exceed the recommended limit of 0.1 milligram per liter across much of the Nation. Data from the NAWQA Program are representative of a variety of phosphorus-control measures, and, therefore, may be used to evaluate the effects of various control strategies. Current areas of concern include: evaluation of the effects of increased manure loadings of phosphorus on soil phosphorus and, subsequently, on ground water and subsurface runoff; determination of point-source and nonpoint-source components of phosphorus loads by geographic modeling and hydrologic separation techniques; and development of methods or indices to evaluate nutrient impairment in streams and rivers to serve as a basis for developing phosphorus criteria or standards.

Water-Resources Investigations Report↗

USGS2015

Southern Salish Sea Habitat Map Series: Admiralty Inlet

In 2010 the Environmental Protection Agency, Region 10 initiated the Puget Sound Scientific Studies and Technical Investigations Assistance Program, designed to support research in support of implementing the Puget Sound Action Agenda. The Action Agenda was created in response to Puget Sound having been designated as one of 28 estuaries of national significance under section 320 of the U.S. Clean Water Act, and its overall goal is to restore the Puget Sound Estuary's environment by 2020. The Southern Salish Sea Mapping Project was funded by the Assistance Program request for proposals process, which also supports a large number of coastal-zone- and ocean-management issues. The issues include the recommendations of the Marine Protected Areas Work Group to the Washington State Legislature (Van Cleve and others, 2009), which endorses a Puget Sound and coast-wide marine conservation needs assessment, gap analysis of existing Marine Protected Areas (MPA) and recommendations for action. This publication is the first of four U.S. Geological Survey Scientific Investigation Maps that make up the Southern Salish Sea Mapping Project. The remaining three map blocks to be published in the future, located south of Admiralty Inlet, are shown in figure 1. Puget Sound is a deep, fjord-type estuary covering an area of 2,330 km 2 in the Pacific Northwest region of the United States (fig. 1). It is connected to the ocean by the Strait of Juan de Fuca, a turbulent passage approximately 160 km in length and 22 km wide at its west end, expanding to over 40 km wide at its east end (Thomson, 1994). During the Pleistocene, the area was occupied several times by lobes of continental ice, resulting in a complex basin-fill of glacial and interglacial deposits that are locally as thick as 1100 m (Johnson and others, 2001). The last glaciation, called the Fraser glaciation, began after 28,800±740 14 C yr B.P. when ice started a slow expansion (Clague, 1981). At peak advance the westward Juan de Fuca lobe reached the edge of the continental shelf through the Juan de Fuca Strait shortly before 14,460±200 14 C yr B.P. (Herzer and Bornhold, 1982). The southward Puget lobe advanced to its terminal position in Puget Sound by around 14,150 14 C yr B.P. (Porter and Swanson, 1998). Ice retreated from its maximum to northern Whidbey Island by 13,650±350 14 C yr B.P. (Dethier and others, 1995). Retreating glaciers resulted in a thick sequence of ice-contact, glacial-marine sediment, and early post-glacial sediments (Linden and Schurrer, 1988). These deposits have experienced the effects of a marine transgression followed by regression, resulting in a sea-level several tens of meters lower than the present day (Linden and Schurrer, 1988). A second transgression brought sea level to about the present level by around 5,470±120 14 C yr B.P. (Clague and others, 1982) establishing the present oceanographic and geologic environment Puget Sound is separated into four interconnected basins; Whidbey, Central (Main), Hood Canal, and South (Thomson, 1994). The Whidbey, Central, and Hood Canal basins are the three main branches of the Puget Sound estuary and are separated from the Strait of Juan de Fuca by a double sill at Admiralty Inlet. The Admiralty Inlet map area includes the Inlet and a portion of the Whidbey Basin (fig. 1). The shallower South Basin is separated by a sill at Tacoma Narrows and is highly branched with numerous finger inlets. Flow within Puget Sound is dominated by tidal currents of as much as 1 m/s at Admiralty Inlet, reducing to approximately 0.5 m/s in the Central Basin (Lavelle and others, 1988). The lack of silt and clay-sized sediments in the Admiralty Inlet map area is likely a result of the strong currents (see Ground-Truth Studies for the Admiralty Inlet Map Area, sheet 3). The subtidal component of flow reaches approximately 0.1 m/s and is driven by density gradients arising from the contrast in salty ocean water at the entrance and freshwater inputs from stream flow (Lavelle and others, 1988). The total freshwater input to Puget Sound is approximately 3.4 x 10 6 m 3 /day, primarily from the Skagit River (Cannon, 1983). The subtidal circulation mostly consists of a two-layered flow in the basins with fresher water exiting at the surface and saltier water entering at depth (Ebbesmeyer and Cannon, 2001). In general, surface waters flow north and deeper waters flow south; variations arise from wind effects that can drive a surface current in the same direction as the wind, and a baroclinic response in the lower layer to about 100-m depth (Matsuura and Cannon, 1997). Oceanographic properties are influenced by temporal forcing parameters such as reduced stream flow during the 2000-01 drought that increased surface salinity and decreased differences between surface and bottom waters (Newton and others, 2003). On offshore seismic-reflection profiles, Pleistocene strata (excluding latest Pleistocene glacial and post-glacial deposits) form a distinct seismic unit, bounded below by pre-Tertiary or Tertiary basement and above by typically flat-lying latest Pleistocene to Holocene deposits that fill in erosional or depositional relief (Johnson and others, 2001). Cores from central Puget Sound have accumulation rates that range from 85 to 1200 mg/cm 2 /yr, or 0.12 to 2.4 cm/yr; the highest accumulation rates are near the southern end of central Puget Sound (Carpenter and others, 1985). Carpenter and others (1985) un-weighted arithmetic mean of accumulation rates for central Puget Sound deeper stations is 480±340 (± one standard deviation) mg/cm 2 /yr. Lavelle and others (1985) also found rates as high as 1200 mg/cm 2 /yr over the past approximately 70 years in cores in the Central Basin off of and north and south of Elliott Bay. Puget Sound basin rates are comparable to rates in midshelf silt deposits on the Washington coast north of the Columbia River (Nittrouer and others, 1979). The deep subtidal (in other words, below SCUBA depths) habitats of Puget Sound are relatively poorly known. A few subtidal surveys exist for several habitat types from the 1960s and 1970s (reviewed in Dethier, 1990), using grab and box core data. The Dethier (1990) review divides habitat up into Coast and Marine Ecological Classification Standard (CMECS) substrate, water column energy, and depth zones but does not attempt to map these habitats, rather it is an inventory of habitats found in the area and the flora and fauna associated with each habitat. The approach of the Southern Salish Sea Mapping project is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data (the undersea equivalent of satellite remote-sensing data in terrestrial mapping), acoustic backscatter, seafloor video, seafloor photography, and bottom-sediment sampling data. This approach is based in part on methods presented and data collection and product needs identified at the Washington State Seafloor Mapping Workshop (Washington State Seafloor Mapping Workshop Steering Committee, 2008), attended by coastal and marine managers and scientists. The map products display seafloor geomorphology and substrate, and identify potential marine benthic habitats. It is emphasized that the more interpretive habitat and geology maps rely on the integration of multiple, new high-resolution datasets and that mapping at small scales would not be possible without such data. Oceanographic current and wave data is not included in this analysis, however, the accompanying geographic information system (GIS) data set is designed and intended to be combined with oceanographic and biologic data sets assembled by others in the future and some of the GIS data has already been incorporated in the unpublished Nature Conservancy Benthic Habitats of Puget Sound database. This publication includes four map sheets, explanatory text, and a descriptive pamphlet. Each map sheet is published as a portable document format (PDF) file. ESRI ArcGIS compatible geotiffs (for example, bathymetry) and shapefiles (for example video observation points) will be available for download in the data catalog associated with this publication (Cochrane, 2015). An ArcGIS Project File with the symbology used to generate the map sheets is also provided. For those who do not own the full suite of ESRI GIS and mapping software, the data can be read using ESRI ArcReader, a free viewer that is available at http://www.esri.com/software/arcgis/arcreader/index.html .

Washington↗

USGS2022

Highly pathogenic avian influenza is an emerging disease threat to wild birds in North America

Prior to the emergence of the A/goose/Guangdong/1/1996 (Gs/GD) H5N1 influenza A virus, the long-held and well-supported paradigm was that highly pathogenic avian influenza (HPAI) outbreaks were restricted to poultry, the result of cross-species transmission of precursor viruses from wild aquatic birds that subsequently gained pathogenicity in domestic birds. Therefore, management agencies typically adopted a prevention, control, and eradication strategy that included strict biosecurity for domestic bird production, isolation of infected and exposed flocks, and prompt depopulation. In most cases, this strategy has proved sufficient for eradicating HPAI. Since 2002, this paradigm has been challenged with many detections of viral descendants of the Gs/GD lineage among wild birds, most of which have been associated with sporadic mortality events. Since the emergence and evolution of the genetically distinct clade 2.3.4.4 Gs/GD lineage HPAI viruses in approximately 2010, there have been further increases in the occurrence of HPAI in wild birds and geographic spread through migratory bird movement. A prominent example is the introduction of clade 2.3.4.4 Gs/GD HPAI viruses from East Asia to North America via migratory birds in autumn 2014 that ultimately led to the largest outbreak of HPAI in the history of the United States. Given the apparent maintenance of Gs/GD lineage HPAI viruses in a global avian reservoir; bidirectional virus exchange between wild and domestic birds facilitating the continued adaptation of Gs/GD HPAI viruses in wild bird hosts; the current frequency of HPAI outbreaks in wild birds globally, and particularly in Eurasia where Gs/GD HPAI viruses may now be enzootic; and ongoing dispersal of AI viruses from East Asia to North America via migratory birds, HPAI now represents an emerging disease threat to North American wildlife. This recent paradigm shift implies that management of HPAI in domestic birds alone may no longer be sufficient to eradicate HPAI viruses from a given country or region. Rather, agencies managing wild birds and their habitats may consider the development or adoption of mitigation strategies to minimize introductions to poultry, to reduce negative impacts on wild bird populations, and to diminish adverse effects to stakeholders using wildlife resources. The main objective of this review is, therefore, to provide information that will assist wildlife managers in developing mitigation strategies or approaches for dealing with outbreaks of Gs/GD HPAI in wild birds in the form of preparedness, surveillance, research, communications, and targeted management actions. Resultant outbreak response plans and actions may represent meaningful steps of wildlife managers toward the use of collaborative and multi-jurisdictional One Health approaches when it comes to the detection, investigation, and mitigation of emerging viruses at the human-domestic animal-wildlife interface.

Journal of Wildlife Management↗

USGS1999

Computer Program for Point Location And Calculation of ERror (PLACER)

A program designed for point location and calculation of error (PLACER) was developed as part of the Quality Assurance Program of the Federal Highway Administration/U.S. Geological Survey (USGS) National Data and Methodology Synthesis (NDAMS) review process. The program provides a standard method to derive study-site locations from site maps in highwayrunoff, urban-runoff, and other research reports. This report provides a guide for using PLACER, documents methods used to estimate study-site locations, documents the NDAMS Study-Site Locator Form, and documents the FORTRAN code used to implement the method. PLACER is a simple program that calculates the latitude and longitude coordinates of one or more study sites plotted on a published map and estimates the uncertainty of these calculated coordinates. PLACER calculates the latitude and longitude of each study site by interpolating between the coordinates of known features and the locations of study sites using any consistent, linear, user-defined coordinate system. This program will read data entered from the computer keyboard and(or) from a formatted text file, and will write the results to the computer screen and to a text file. PLACER is readily transferable to different computers and operating systems with few (if any) modifications because it is written in standard FORTRAN. PLACER can be used to calculate study site locations in latitude and longitude, using known map coordinates or features that are identifiable in geographic information data bases such as USGS Geographic Names Information System, which is available on the World Wide Web.

Open-File Report↗

USGS2010

Seismology of the continental crust and upper mantle

More seismological studies of the continental crust and sub‐crustal lithosphere of the United States have been completed in the past four years than at any other similar period, and a continued growth in activity is likely to continue for years to come. Several trends account for this phenomenon. First, the interest in seismic reflection studies generated initially by COCORP results in this country [ Brown and others , 1986], and later by the British BIRPS results [ Matthews and Gheadie , 1986], has led to the development of several other seismic reflection programs. Among the most active of these research programs are those of the University of Wyoming [ Smithson and others , 1986], Virginia Polytechnic Institute, CALCRUST [ Henyey , 1986], and the U.S. Geological Survey (USGS) [ Hamilton , 1986]. In Canada, the Lithoprobe program has achieved remarkable results in a variety of geographic locations [ Green et al. , 1986]. A second trend is the resurgence of interest in seismic‐refraction/wide‐angle reflection profiling. The year 1978 marked the beginning of this increased activity when several large projects were conducted in the western U.S., such as the Yellowstone‐Snake River Plain experiment organized by the University of Utah. Since 1979, a large amount of refraction/wide‐angle reflection data has been collected by the USGS and by university groups utilizing large numbers of state‐of‐the‐art industry seismographs in cooperative experiments. A third trend is the increased sophistication of other seismic methods such as teleseismic delay‐time methods, tomography, and receiver‐transfer functions. In these studies, permanent or temporary recording arrays have been used to determine local and regional crustal and upper‐mantle structure with impressive resolution.

Reviews of Geophysics↗

USGS2020

Using advanced population genomics to better understand the relationship between offshore and spawning habitat use for Atlantic Sturgeon

Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) are a large-bodied anadromous fish that historically supported important fisheries along the east coast of the United States. Following years of overharvest and habitat degradation, populations experienced severe declines. In 2012, the National Marine Fisheries Service listed Atlantic Sturgeon under the Endangered Species Act (ESA; 61 FR 4722). Their listing named five Distinct Population Segments (DPSs), predicated on genetic groups composed of geographically proximate populations. Federal management of Atlantic Sturgeon presents challenges, as sturgeon from each of the five DPSs mix extensively in coastal and marine habitats yet take and recovery progress must be evaluated separately for each unit. Genetic assignment testing based on mitochondrial and microsatellite markers allows individuals to be assigned back to their natal river and DPS. However, this approach is not perfect and some individuals may be incorrectly assigned. Recent advances in genomics offer the potential of a higher resolution approach to genetic assignment testing, and thus may reduce uncertainty associated with assignment testing. In addition, genomics allows a greater number of markers to be examined from across a broader portion of the sturgeon genome, thus may provide an enhanced perspective of population structure for the species, and potentially allow other previously intractable questions to be addressed (Bernatchez et al. 2017, Supple and Shapiro 2018). We used next-generation sequencing to develop a draft genome for Atlantic Sturgeon and identify single nucleotide polymorphisms (SNPs) that could be used to resolve the natal river and DPS of individual Atlantic Sturgeon. We identified 1,210 candidate SNPs within the nuclear genome as well as 49 SNPs within the mitochondrial genome. After filtering and review, we selected 161 nuclear SNPs and 39 mitochondrial SNPs for further testing and evaluation. We used genotyping-in-thousands by sequencing (GT-seq) to simultaneously sequence nuclear SNP loci, mitochondrial SNP loci, and the existing panel of twelve microsatellite loci. This effort required a pilot sequencing run on a single sturgeon sample to test marker amplification and refine primer strengths, followed by a series of sequencing runs to generate baseline data for 288 individuals representing nine populations of Atlantic Sturgeon in four DPSs. Using baseline data from the nine populations, we ran a series of genomic analyses to characterize diversity within and among populations, providing a benchmark for this species using the new SNP markers. Allelic richness was similar for all populations, although there was a general trend of more northern population containing greater levels of allelic richness. Interestingly, we observed linkage disequilibrium among many pairs of loci within many populations. This might be the result of physical linkage but could also suggest these populations are recovering from genetic bottlenecks and/or are effectively small, leading to specific haplotypes to be favored by chance. Pairwise differentiation among populations varied among the populations ( F ST range: 0.010-0.098) and was significantly correlated ( r = 0.771; P < 0.001) to pairwise F ST observed using microsatellite markers). Population clustering and ordination techniques using the new genomic data both support an overall population structure that is similar to the current DPS management units (which were developed primarily based on microsatellite genetic data). Overall, this suggests that existing microsatellite markers and the panel of SNP markers developed in this study provide similar information about the populations structure and ecology of Atlantic Sturgeon. Given the observed differences in allele frequencies among populations, our genomic baseline supports previous assertations that Atlantic Sturgeon show natal homing, despite mixing extensively in marine waters during non-breeding periods. Lower levels of differentiation between populations in the South Atlantic DPS suggest that populations in this region may have greater levels of gene flow relative to their more northerly conspecifics, which has also previously been suggested based on microsatellite data. The observed differentiation among populations provides the necessary foundation for determining the natal river and DPS of Atlantic Sturgeon using assignment testing. We tested the utility of our new genomic baseline for resolving the population and DPS of Atlantic Sturgeon. Our nuclear SNP markers showed utility for identifying the origin of unknown Atlantic Sturgeon samples, as 86.5% were assigned to the correct DPS and 66.3% were assigned to the correct natal river. However, since this study was funded the Conservation Genetics and Genomics Laboratory at Leetown Science Center has made significant improvements to their microsatellite genetic baseline, which now performs more effectively than our new genomic approach (the genetic baseline includes 12 populations and 5 DPSs, and correctly assigns 95.8% of individuals to DPS and 84.9% of individuals to their natal population using 12 microsatellite loci). We conducted an ad hoc exploration of how additional microsatellite or nuclear SNP loci may further improve the accuracy of assignment testing. We found that additional microsatellite markers are likely to result in greater improvements in assignment efficiency than additional nuclear SNPs. However, a much larger number of SNP loci (which if identified could be sequenced using other methods that are now available; e.g., the RAD-capture approach published by Ali et al. 2016) could produce assignment efficiencies that are greater than what is currently feasible using microsatellites. In the absence of further research and development of additional SNP markers for Atlantic Sturgeon (possibly using an approach other than GT-seq), the existing microsatellite loci are the most effective means available to determine the natal river and DPS of Atlantic Sturgeon encountered in offshore waters. Because our new genomic markers were less effective than the existing panel of 12 microsatellite markers, we chose to use the existing microsatellite markers to assign Atlantic Sturgeon captured in another BOEM-funded study (cooperative agreement M16AC00003; Monitoring endangered Atlantic Sturgeon and commercial finfish habitat use offshore New York) following consultation with our project officer. Using this approach, we genotyped and assigned 186 Atlantic Sturgeon captured in coastal waters off the Rockaway Peninsula, New York. The vast majority of these sturgeon were assigned to the New York Bight DPS (94.62%), and most appear to belong to the Hudson River population (87.10%) with smaller contributions from the Delaware River population (7.53%). Smaller contributions (2.15%) were observed from six other populations, including those from the James, York, Kennebec, Ogeechee, and Edisto rivers. Although most of the fish we assigned were assigned to the nearest spawning rivers (Hudson and Delaware), the contributions from distant rivers is consistent with the propensity of this species to move long distances and form mixed stock aggregations along the continental shelf. This finding indicates that spawning populations (and their corresponding DPS) from distant locations may potentially be impacted by offshore activities. In fact, activities in this region of the New York Bight could negatively impact Atlantic Sturgeon population from at least four different DPSs. Genetic or genomic assignment testing remains an essential tool to characterize potential impacts to Atlantic Sturgeon populations and should be applied more broadly to better characterize potential impacts of activities in other locations.

Atlantic Coast↗

USGS2009

A historical perspective on the "fish tumors or other deformities" beneficial use impairment at Great Lakes Areas of Concern

The Great Lakes Water Quality Agreement defines Areas of Concern as geographic areas that fail to meet the general or specific objectives of the agreement where such failure has caused or is likely to cause impairment of beneficial use of the area's ability to support aquatic life. One of the beneficial use impairments, fish tumors or other deformities, is defined by the International Joint Commission to occur when the incidence rate of fish tumors and other deformities exceeds rates at unimpacted or control sites, or when survey data confirm the presence of neoplastic or preneoplastic liver tumors in bullhead or suckers. Brown bullhead, a benthic species with a limited home range, have frequently been used as indicator species in U.S. Areas of Concern. While there is strong field evidence for an association between PAH exposure and hepatic neoplasia in brown bullhead, laboratory investigations would strengthen the association. There is less evidence linking specific classes of chemicals in the environment to orocutaneous neoplasia in brown bullhead. Studies on orocutaneous neoplasia of brown bullhead should focus on assessing the presence or absence of viruses and on epidermal exposure to specific chemicals and chemical mixtures. Lastly, the effects of covariates such as length, age, and gender on the prevalence of liver and skin neoplasms should be investigated. This paper reviews the state of science on the fish tumors or other deformities beneficial use impairment. Subsequent papers address specific issues related to this impairment and provide recommendations for standardized criteria.

Journal of Great Lakes Research↗

USGS2019

On the eruption age and provenance of the Old Crow tephra

Tephrochronology is used to correlate and reconstruct geographically disparate sedimentary records of changing environment, climate, and landscape throughout geologic time. Single tephra layers represent isochronous markers across broad regions, thus accurate and precise radiometric constraints on the timing of eruption are critical to their utility. The Old Crow tephra is found throughout eastern Beringia and represents the largest preserved Pleistocene ashfall event in the region. Despite its volume and significance as a stratigraphic marker, the provenance of this tephra is debated, and the interpreted eruption age of marine isotope stage (MIS) 5 at ∼125 ka has vacillated. To investigate provenance and eruption age, we develop a geochemical fingerprint for the Old Crow tephra via titanomagnetite geochemistry, and zircon crystallization/cooling age via coupled U/Pb, U/Th, and (U Th)/He zircon geochronology. Our results indicate that Old Crow oxides are geochemically distinct from the commonly assumed source-caldera system at the Emmons Lake Volcanic Center (ELVC). Zircon crystals from the Old Crow tephra range in age from Proterozoic to Pleistocene, with concordant zircon U/Pb, U/Th, and (U Th)/He dates on the youngest population of grains suggesting crystallization in their parent magma, and in turn eruption, at 202.9 ± 9.5 ka. We discuss strengths and shortcomings of our radiogenic datasets in light of this result and review the far-reaching implications of a change in Old Crow eruption age.

Alaska↗

USGS2015

Final project memorandum: sea-level rise modeling handbook: resource guide for resource managers, engineers, and scientists

Coastal wetlands of the Southeastern United States are undergoing retreat and migration from increasing tidal inundation and saltwater intrusion attributed to climate variability and sea-level rise. Much of the literature describing potential sea-level rise projections and modeling predictions are found in peer-reviewed academic journals or government technical reports largely suited to reading by other Ph.D. scientists who are more familiar or engaged in the climate change debate. Various sea-level rise and coastal wetland models have been developed and applied of different designs and scales of spatial and temporal complexity for predicting habitat and environmental change that have not heretofore been synthesized to aid natural resource managers of their utility and limitations. Training sessions were conducted with Federal land managers with U.S. Fish and Wildlife Service, National Park Service, and NOAA National Estuarine Research Reserves as well as state partners and nongovernmental organizations across the northern Gulf Coast from Florida to Texas to educate and to evaluate user needs and understanding of concepts, data, and modeling tools for projecting sea-level rise and its impact on coastal habitats and wildlife. As a result, this handbook was constructed from these training and feedback sessions with coastal managers and biologists of published decision-support tools and simulation models for sea-level rise and climate change assessments. A simplified tabular context was developed listing the various kinds of decision-support tools and ecological models along with criteria to distinguish the source, scale, and quality of information input and geographic data sets, physical and biological constraints and relationships, datum characteristics of water and land elevation components, utility options for setting sea-level rise and climate change scenarios, and ease or difficulty of storing, displaying, or interpreting model output. The handbook is designed to be a primer to understanding sea-level rise and a practical synthesis of the current state of knowledge and modeling tools as a resource guide for DOl land management needs and facilitating Landscape Conservation Cooperative (LCC) research and conservation initiatives.

Conference Paper↗

USGS2012

User’s guide and metada for the PICES Nonindigenous Species Information System

Introduction Welcome to the PICES Nonindigenous Species Information System, a Microsoft Access database that displays the biogeographic distributions, invasion status, vectors, and key life history attributes of the approximately 740 reported nonindigenous species (NIS) in the estuarine and near-coastal habitats of the North Pacific and Hawaii. This database was developed by the U.S. Environmental Protection Agency and the U.S. Geological Survey under the auspices of Working Group 21 (Invasive Species) of the North Pacific Marine Science Organization (PCIES). The PICES database contains the data used to generate the “Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific” (Lee and Reusser, 2012; herein referred to as the “Atlas”). The User’s Guide provides instructions on how to use the PICES database as well as metadata for the database and the Atlas. We note that for most users, the Atlas provides a simpler approach to accessing key information on NIS in the PICES countries than the database, though the database does provide additional information on species and sources as well as allowing users to extract information on specific taxa and/or locations (see Section 4). The PICES database also includes species reported from the PICES Rapid Assessment Surveys (RAS). PICES sponsored four rapid assessment surveys with the objective of quickly characterizing the native, non-native, and cryptogenic species present in different locations. Surveys were sponsored in Dalian, China in 2008, Jeju, Korea in 2009, Newport, Oregon, USA in 2010, and Peter the Great Bay, near Vladivostok and Nakhodka, Russia in 2011 ( http://www.pices.int/publications/pices_press/volume19/v19_n1/pp_30-31_Kobe-WS_f.pdf , http://www.pices.int/publications/pices_press/volume20/v20_n1/pp_26-29_RAS-2011.pdf ). The PICES database contains the RAS species that were made available in time for inclusion. Thus, the database does not capture all the species found in these surveys. In addition, much of the information on the RAS species was provided by the experts conducting the survey, and their distributions, environmental requirements, and life history attributes were not evaluated to the same level of detail by the PICES authors as the North Pacific NIS. In lieu of the more extensive review as conduced with the Atlas species, the information on the RAS species needs to be considered preliminary. Additionally, it is important to use the “Map All Distributions” option (see Section 3.6.6) when mapping their distribution or conducting a query. The general reference for the RAS surveys in the PICES database is “PICES Working Group 21, YEAR SURVEY”. The overall goal of both the database and Atlas was to simplify and standardize the dissemination of distributional, habitat, and life history characteristics of near-coastal and estuarine nonindigenous species. This database provides a means of querying these data and displaying the information in a consistent format. The specific classes of information the database captures include: Regional and global ranges of native and nonindigenous near-coastal and estuarine species at different hierarchical spatial scales. Habitat and physiological requirements of near-coastal and estuarine species. Life history characteristics of near-coastal and estuarine species. Invasion history and vectors for nonindigenous species. This standardized and synthesized data in the database and the Atlas provide the basic information needed to address a number of managerial and scientific needs. Thus, users will be able to: Create a baseline on the extent of invasion by region in order to assess new invasions. Use existing geographical patterns of invasion to gain some insights into potential new invaders. Use existing geographical patters of invasion to gain some insights into mechanisms affecting relative invasibility of different areas. Use life history attributes and environmental requirements of the reported nonindigenous species to evaluate traits of invaders. Understand the potential spread of invaders based on their habitat and environmental requirements. Understand importance of different vectors of introduction of nonindigenous species by region. The data in the Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific (Lee and Reusser, 2012) are up-to-date as of June 2012. Updates to the PICES database were made in September 2012.

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USGS2015

U.S. Geological Survey National Water Census: Colorado River Basin Geographic Focus Area Study

Introduction The U.S. Geological Survey’s (USGS) concept of a national census (or accounting) of water resources has evolved over the last several decades as the Nation has experienced increasing concern over water availability for multiple competing uses. The implementation of a USGS National Water Census was described in the USGS 2007 science strategy document that identified the highest priority science topics for the decade 2007–17. In 2009, the SECURE Water Act (Public Law 111–11, subtitle F) authorized the USGS to create a Water Availability and Use Assessment Program for the Nation, and in 2012, the Department of the Interior WaterSMART initiative provided funding to begin implementation of the USGS National Water Census (NWC). Generally, the USGS NWC approaches water-availability assessment in terms of a “water budget.” The water-budget approach seeks to better quantify the inflows and outflows of water, as well as the change in storage volume, both nationally and at a regional scale and, by doing so, provides critical information to managers and stakeholders responsible for making water-availability decisions. The NWC has two primary components: Topical Studies and Geographic Focus Area Studies. Topical Studies do research on methods that can provide nationwide estimates of particular water-budget components at the subwatershed scale. Some examples of NWC Topical Studies include estimation of streamflow at ungaged locations; periodic quantification of evapotranspiration; and water use related to development of unconventional oil and gas. These efforts are planned to include additional topics in the future. Geographic Focus Area Studies (FASs) assess water availability and use within a defined geographic area, typically a surface-water drainage basin, to increase the understanding of factors affecting water availability in the region. In the FASs, local stakeholder input helps the USGS identify what components of the water budget are in most need of additional understanding or quantification. Focus Area Studies are planned as 3-year efforts and, typically, three FASs are ongoing in different parts of the country at any given time. The Colorado River Basin (CRB) and the Delaware and Apalachicola-Chattahoochee-Flint (ACF) River Basins were selected by the Department of the Interior for the first round of FASs because of the perceived water shortages in the basins and potential conflicts over water supply and allocations. After gathering input from numerous stakeholders in the CRB, the USGS determined that surface-water resources in the basin were already being closely monitored and that the most important scientific contribution could be made by helping to improve estimates of four water-budget components: evapotranspiration losses, snowpack hydrodynamics, water-use information, and the relative importance of groundwater discharge in supporting streamflow across the basin. The purpose of this fact sheet is to provide a brief summary of the CRB FAS results as the study nears completion. Although some project results are still in the later stages of review and publication, this fact sheet provides an overall description of the work completed and cites the publications in which additional information can be found.

Arizona, California, Colorado, Nevada, New Mexico,↗

USGS2017

The role of the North American Breeding Bird Survey in conservation

The North American Breeding Bird Survey (BBS) was established in 1966 in response to a lack of quantitative data on changes in the populations of many bird species at a continental scale, especially songbirds. The BBS now provides the most reliable regional and continental trends and annual indices of abundance available for >500 bird species. This paper reviews some of the ways in which BBS data have contributed to bird conservation in North America over the past 50 yr, and highlights future program enhancement opportunities. BBS data have contributed to the listing of species under the Canadian Species at Risk Act and, in a few cases, have informed species assessments under the U.S. Endangered Species Act. By raising awareness of population changes, the BBS has helped to motivate bird conservation efforts through the creation of Partners in Flight. BBS data have been used to determine priority species and locations for conservation action at regional and national scales through Bird Conservation Region strategies and Joint Ventures. Data from the BBS have provided the quantitative foundation for North American State of the Birds reports, and have informed the public with regard to environmental health through multiple indicators, such as the Canadian Environmental Sustainability Indicators and the U.S. Environmental Protection Agency's Report on the Environment. BBS data have been analyzed with other data (e.g., environmental, land cover, and demographic) to evaluate potential drivers of population change, which have then informed conservation actions. In a few cases, BBS data have contributed to the evaluation of management actions, including informing the management of Mourning Doves ( Zenaida macroura ), Wood Ducks ( Aix sponsa ), and Golden Eagles ( Aquila chrysaetos ). Improving geographic coverage in northern Canada and in Mexico, improving the analytical approaches required to integrate data from other sources and to address variation in detectability, and completing the database, by adding historical bird data at each point count location and pinpointing the current point count locations would further enhance the survey's value.

Condor↗

USGS1998

Digital Geologic Map of the Rosalia 1:100,000 Quadrangle, Washington and Idaho: A Digital Database for the 1990 S.Z. Waggoner Map

The geologic map of the Rosalia 1:100,000-scale quadrangle was compiled in 1990 by S.Z. Waggoner of the Washington state Division of Geology and Earth Resources. This data was entered into a geographic information system (GIS) as part of a larger effort to create regional digital geology for the Pacific Northwest. The intent was to provide a digital geospatial database for a previously published black and white paper geologic map. This database can be queried in many ways to produce a variety of geologic maps. Digital base map data files are not included: they may be obtained from a variety of commercial and government sources. This database is not meant to be used or displayed at any scale larger than 1:100,000 (e.g., 1:62,500 or 1:24,000) as it has been somewhat generalized to fit the 1:100,000 scale map. The map area is located in eastern Washington and extends across the state border into western Idaho. This open-file report describes the methods used to convert the geologic map data into a digital format, documents the file structures, and explains how to download the digital files from the U.S. Geological Survey public access World Wide Web site on the Internet. We wish to thank J. Eric Schuster of the Washington Division of Geology and Earth Resources for providing the original stable-base mylar and the funding for it to be scanned. We also thank Dick Blank and Barry Moring of the U.S. Geological Survey for reviewing the manuscript and digital files, respectively.

Open-File Report↗

USGS1999

Digital Geologic Map of the Wallace 1:100,000 Quadrangle, Idaho

The geology of the Wallace 1:100,000 quadrangle, Idaho was compiled by Reed S. Lewis in 1997 primarily from published materials including 1983 data from Foster, Harrison's unpublished mapping done from 1975 to 1985, Hietenan's 1963, 1967, 1968, and 1984 mapping, Hobbs and others 1965 mapping, and Vance's 1981 mapping, supplemented by eight weeks of field mapping by Reed S. Lewis, Russell F. Burmester, and Mark D. McFaddan in 1997 and 1998. This geologic map information was inked onto a 1:100,000-scale greenline mylar of the topographic base map for input into a geographic information system (GIS). The resulting digital geologic map GIS can be queried in many ways to produce a variety of geologic maps. Digital base map data files (topography, roads, towns, rivers and lakes, etc.) are not included: they may be obtained from a variety of commercial and government sources. This database is not meant to be used or displayed at any scale larger than 1:100,000 (e.g., 1:62,500 or 1:24,000). The map area is located in north Idaho. The primary sources of map data are shown in figure 2 and additional sources are shown in figure 3. This open-file report describes the geologic map units, the methods used to convert the geologic map data into a digital format, the Arc/Info GIS file structures and relationships, and explains how to download the digital files from the U.S. Geological Survey public access World Wide Web site on the Internet. Mapping and compilation was completed by the Idaho Geological Survey under contract with the U.S. Geological Survey (USGS) office in Spokane, Washington. The authors would like to acknowledge the help of the following field assistants: Josh Goodman, Yvonne Issak, Jeremy Johnson and Kevin Myer. Don Winston provided help with our ongoing study of Belt stratigraphy, and Tom Frost assisted with logistical problems and sample collection. Manuscript reviews by Steve Box, Tom Frost, and Brian White are greatly appreciated. We wish to thank Karen S. Bolm of the USGS for reviewing the digital files.

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USGS2003

Chapter F: Preliminary Bibliography of Lacustrine Diatomite Deposits in the Western United States and Related Topics

Introduction As part of the assessment of lacustrine diatomite resources in the Western United States (fig. 1), U.S. Geological Survey (USGS) project members conducted a review of literature relating to the formation, location, and nature of deposits in the study area. This preliminary bibliography consists of selected publications to identify, locate, and describe the deposits to be studied, to characterize common geologic factors about the deposits, and to better understand the factors that control their formation, preservation, or destruction. The bibliography also serves as a resource for other workers to research the topic. References included in the preliminary bibliography were gathered by searching existing bibliographic data bases and library collections. Project researchers also contributed references that they found during the course of their work. This bibliography should be considered a working document that will grow as research and literature searches continue. Clearly, many significant publications may be missing from this preliminary list; therefore, USGS staff members intend to issue a revised bibliography as project work progresses. To assure completeness, input from other researchers and industry is welcome. Although the focus of this bibliography is lacustrine diatomite deposits of the Western United States, additional references that provide a foundation of knowledge for the study of diatomites, diatoms, and diatom-related processes (ecology, geology, geochemistry) and for the uses and behavior of diatomite have also been included. An index of keywords has been added to this bibliography, designed to help the user locate reports by topic or by geographic location. The letter 'A' following a number indicates that the report referenced is an abstract.

Bulletin↗