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At least 379 records · Page 21Linked to original sources

USGS2001

The effects of Myxobolus cerebralis, myxospore dose on triactinomyxon production and biology of Tubifex tubifex from two geographic regions

The aquatic oligochaete Tubifex tubifex is an obligate host of Myxobolus cerebralis, the causative agent of salmonid whirling disease. Tubifex tubifex can become infected by ingesting myxospores of M. cerebralis that have been released into sediments upon death and decomposition of infected salmonids. Infected worms release triactinomyxons into the water column that then infect salmonids. How the dose of myxospores ingested by T. tubifex influences parasite proliferation and the worm host are not well understood. Using replicated laboratory experiments, we examined how differing doses of myxospores (50, 500, 1,000 per worm) influenced triactinomyxon production and biomass, abundance, and individual weight of 2 geographically distinct populations of T. tubifex. Worm populations produced differing numbers of triactinomyxons, but, within a population, the production did not differ among myxospore doses. At the lowest myxospore dose, 1 worm population produced 45 times more triactinomyxons than myxospores received, whereas the other produced only 6 times more triactinomyxons than myxospores. Moreover, total T. tubifex biomass, abundance, and individual weight were lower among worms receiving myxospores than in myxospore-free controls. Thus, T. tubifex populations differ in ability to support the replication of M. cerebralis, and infection has measurable consequences on fitness of the worm host. These results suggest that variability in whirling disease severity observed in wild salmonid populations may partially be attributed to differences in T. tubifex populations.

Journal of Parasitology↗

USGS2010

Recent subsidence-rate reductions in the Mississippi Delta and their geological implications

The Mississippi Delta has long been characterized as an area of rapid subsidence; however, recent subsidence rates are substantially lower than previously reported. Tide-gauge records indicate that rates of relative sea-level rise were slow from 1947 until the mid-1960s, relatively fast from the mid-1960s until the early 1990s, and then slow since the early 1990s. These trends and rates are independently verified by repeat benchmark surveys and height monitoring at continuously operating geographic positioning system stations. Subsidence rates for the slow periods were a few millimeters per year, comparable to rates averaged over geological time scales that are attributed to natural processes such as shallow sediment compaction and deep crustal loading. The decadal pattern of slow, then rapid, then slow subsidence may be caused by natural deep-basin processes ( e.g., gravity gliding and salt migration), but it is more likely related to rates of hydrocarbon production that followed the same temporal trends. If accelerated subsidence was primarily induced by reservoir compaction and fault reactivation associated with fluid withdrawal that also accelerated in the 1960s and 1970s, then the recent reductions in subsidence rates likely reflect a balancing of subsurface stresses and a return to near preproduction conditions.

Arkansas, Louisiana, Mississippi↗

USGS1985

Maceral distributions in Illinois coals and their paleoenvironmental implications

For purposes of assessing the maceral distribution of Illinois (U.S.A.) coals analyses were assembled for 326 face channel and drill core samples from 24 coal members of the Pennsylvanian System. The inertinite content of coals from the Missourian and Virgilian Series averages 16.1% (mineral free), compared to 9.4% for older coals from the Desmoinesian and older Series. This indicates there was generally a higher state of oxidation in the peat that formed the younger coals. This state probably resulted from greater exposure of these peats to weathering as the climate became drier and the water table lower than was the case for the older coals, although oxidation during allochthonous deposition of inertinite components is a genetic factor that needs further study to confirm the importance of the climate. Regional variation of the vitrinite-inertinite ratio (V-I), on a mineral- and micrinite-free basis, was observed in the Springfield (No. 5) and Herrin (No. 6) Coal Members to be related to the geographical position of paleochannel (river) deposits known to have been contemporaneous with the peats that formed these two coal strata. The V-I ratio is highest (generally 12–27) in samples from areas adjacent to the channels, and lower (5–11) some 10–20 km away. We interpret the V-I ratio to be an inverse index of the degree of oxidation to which the original peat was exposed. High V-I ratio coal located near the channels probably formed under more anoxic conditions than did the lower V-I ratio coal some distance away from the channels. The low V-I ratio coal probably formed in areas of the peat swamp where the watertable was generally lower than the channel areas.

International Journal of Coal Geology↗

USGS1999

Use of generalized linear models and digital data in a forest inventory of northern Utah

Forest inventories, like those conducted by the Forest Service's Forest Inventory and Analysis Program (FIA) in the Rocky Mountain Region, are under increased pressure to produce better information at reduced costs. Here we describe our efforts in Utah to merge satellite-based information with forest inventory data for the purposes of reducing the costs of estimates of forest population totals and providing spatial depiction of forest resources. We illustrate how generalized linear models can be used to construct approximately unbiased and efficient estimates of population totals while providing a mechanism for prediction in space for mapping of forest structure. We model forest type and timber volume of five tree species groups as functions of a variety of predictor variables in the northern Utah mountains. Predictor variables include elevation, aspect, slope, geographic coordinates, as well as vegetation cover types based on satellite data from both the Advanced Very High Resolution Radiometer (AVHRR) and Thematic Mapper (TM) platforms. We examine the relative precision of estimates of area by forest type and mean cubic-foot volumes under six different models, including the traditional double sampling for stratification strategy. Only very small gains in precision were realized through the use of expensive photointerpreted or TM-based data for stratification, while models based on topography and spatial coordinates alone were competitive. We also compare the predictive capability of the models through various map accuracy measures. The models including the TM-based vegetation performed best overall, while topography and spatial coordinates alone provided substantial information at very low cost.

Utah↗

USGS2020

Trends and biological effects of environmental contaminants in lamprey

Environmental contamination is of global concern. Lamprey are scientifically, ecologically, culturally, and economically important fishes. Our study represents the first synthesis ever on environmental contamination in lamprey. Objectives of this study include: (1) evaluate lethal and sublethal effects of environmental contaminants on lamprey, thereby providing insight into the potential for environmental contaminants to affect lamprey abundance, (2) highlight the unique characteristics of contaminant accumulation in lamprey, (3) determine whether spatial and temporal trends observed in contaminant concentrations of other top predators of aquatic food webs are reflected in the spatial and temporal trends of contaminant concentrations of lamprey, (4) identify key environmental contaminants affecting consumption advisories for people eating lamprey, and (5) identify important gaps in our knowledge of environmental contamination in lamprey. The geographic scope of this synthesis is worldwide. We conclude that, in general, the environmental contaminant concentrations that have been experienced by lamprey in the wild appear to be nonlethal to lamprey. However, environmental contaminants exert sublethal effects on lamprey. Sea lamprey ( Petromyzon marinus ) and Pacific lamprey ( Entosphenus tridentatus ) are relatively high in total mercury (Hg) concentration compared with other fishes. Compared with other top predators, lamprey are relatively low in polychlorinated biphenyl (PCB) concentration and concentrations of organochlorine pesticides. We also conclude that regulations on the use of PCBs, beginning in the 1970s, were effective in dramatically reducing PCB concentration in lamprey since the 1970s. Emerging contaminants, such as pharmaceuticals, microplastics, and per- and polyfluorinated alkyl substances (PFAS), have yet to be studied in lamprey.

Journal of Great Lakes Research↗

USGS2009

Propagation of the myxozoan parasite Myxobolus cerebralis by different geographic and genetic populations of Tubifex tubifex: An Oregon perspective

Tubifex tubifex are obligate invertebrate hosts in the life cycle of Myxobolus cerebralis, the myxozoan parasite that causes whirling disease in salmonid fishes. This exotic parasite is established to varying degrees across Oregon's Columbia River system (Pacific Northwest, USA) and characteristics of local T. tubifex populations likely play a role in the pattern of disease occurrence. To better understand these patterns, we collected T. tubifex from three Oregon river basins (Willamette, Deschutes, and Grande Ronde), determined their genotype (mitochondrial 16S rDNA lineage and RAPD genotype) and exposed 10 different populations to M. cerebralis in the laboratory. Four mt lineages were identified: I, III, V and VI. Lineage III was found in all river basins but dominated both central and eastern sites. The RAPD assay further divided these lineages into geographic sub-populations; no RAPD genotype was common to all basins. There was a significant difference in prevalence of infection and level of parasite production among the populations we exposed to M. cerebralis that was attributed to genotypic composition. Only lineage III worms released actinospores and only populations dominated by this lineage amplified the parasite. These populations had the lowest survival, however, the lineage dominant before exposure remained dominant despite the high prevalence of infection. The distribution and infection dynamics of susceptible T. tubifex throughout Oregon may contribute to the differences in M. cerebralis occurrence; our studies further support the influence of oligochaete genotypes on the manifestation of whirling disease in salmonid populations. ?? 2009 Elsevier Inc. All rights reserved.

Journal of Invertebrate Pathology↗

USGS2021

The relevance of a type locality: The case of Mephitis interrupta Rafinesque, 1820 (Carnivora: Mephitidae)

For more than 130 years, the type locality of the Plains Spotted Skunk, Spilogale putorius interrupta (Rafinesque, 1820) has been accepted to be along the upper Missouri River. The species’ description was based on a specimen observed by Constantine S. Rafinesque during his 1818 exploration of the Ohio River Valley, but Rafinesque never ventured into the animal’s geographic range west of the Mississippi River, calling into question the type locality and, therefore, the identity of the taxon. We reconstruct Rafinesque’s itinerary from his notes, publications, and correspondence and determine that Rafinesque probably observed the specimen on 20 September in Middletown, Kentucky, while traveling between Louisville and Lexington. He spent the day with John Bradbury, who participated in the 1811 Astor expedition up the Missouri River. On 1 April 1811, Bradbury collected the skin of a skunk, and evidence suggests that it was this skin that Rafinesque described. The type specimen of the Plains Spotted Skunk was obtained on the Missouri River flood plain in southern Chariton County or northern Saline County, Missouri, and this area should be considered the type locality for M. interrupta .

Illinois, Indiana, Kentucky, Missouri, New York, O↗

USGS2025

The relative influence of geographic and environmental factors on rare plant translocation outcomes

Conservation translocations are an established method for reducing the extinction risk of plant species through intentional movement within or outside the indigenous range. Unsuitable environmental conditions at translocation recipient sites and a lack of understanding of species–environment relationships are often identified as critical barriers to translocation success. However, previous syntheses have drawn these inferences from analyses of qualitative feedback rather than quantitative environmental data. In this study, we use a data set of 235 translocations conducted in the US to understand the influences of geographic and environmental factors on three metrics of translocation success: population persistence, next-generation recruitment and next-generation maturity. We use random forest models to quantify the relative importance of geographic and environmental factors that characterize dissimilarity between source and recipient locations, the position of recipient sites relative to species' ranges and niche metrics derived from these ranges. We also compare the importance of these variables with more conventional predictors (e.g. founder population size). Our results indicate that geographic and environmental variables can be as insightful as conventional variables for predicting plant translocation outcomes. The climate suitability of recipient sites, estimated using species distribution models, was the strongest relative predictor of whether a population persisted, with populations situated in more suitable climates displaying greater persistence. Next-generation recruitment and maturity were best predicted by niche metrics; species in more biotically limiting environments, including tropical regions and soils with high relative nutrient retention, as well as species with the broadest precipitation niches, were the least likely to attain these next-generation benchmarks. Synthesis and applications . Our study is one of the first to quantify the important role of spatial and climatic factors in rare plant translocation outcomes. We provide a novel geographic and environmental perspective on outcomes in plant translocations and demonstrate opportunities to improve translocation success not only by adhering to established best practice guidelines but also by integrating spatial modelling approaches into planning and management processes.

Journal of Applied Ecology↗

USGS2015

Detection of Ichthyophonus by chromogenic in situ hybridization

Ichthyophonus hoferi (Plehn & Mulsow 1911 ) is a protistan parasite in the class Mesomycetozoea that infects a large range of marine and freshwater fish (Mendoza, Taylor & Ajello 2002 ; McVicar 2011 ). The broad host and geographic range, which includes both fresh and marine waters of the Northern and Southern Hemispheres, combined with a lack of distinguishing morphological characteristics, have prompted speculation that Ichthyophonus -like organisms in multiple species of fish, as well as reptiles, amphibians, birds and invertebrates, may have been incorrectly classified under a single type species I. hoferi (McVicar 2011 ). At present, only two species, I. hoferi and I. irregularis , are currently recognized within the genus (Rand et al . 2000 ; Mendoza et al . 2002 ). Investigations of ribosomal DNA sequence variation have begun to clarify relationships among Ichthyophonus types (Criscione et al . 2002 ; Rasmussen et al . 2010 ). Here, we will use the term Ichthyophonus to broadly represent all members of the genus regardless of species/subspecies.

Journal of Fish Diseases↗

USGS1991

Inter- and intraspecific mitochondrial DNA variation in North American bears (Ursus)

We assessed mitochondrial DNA variation in North American black bears (Ursus americanus), brown bears (Ursus arctos), and polar bears (Ursus maritimus). Divergent mitochondrial DNA haplotypes (0.05 base substitutions per nucleotide) were identified in populations of black bears from Montana and Oregon. In contrast, very similar haplotypes occur in black bears across North America. This discordance of haplotype phylogeny and geographic distribution indicates that there has been maintenance of polymorphism and considerable gene flow throughout the history of the species. Intraspecific mitochondrial DNA sequence divergence in brown bears and polar bears is lower than in black bears. The two morphological forms of U. arctos, grizzly and coastal brown bears, are not in distinct mtDNA lineages. Interspecific comparisons indicate that brown bears and polar bears share similar mitochondrial DNA (0.023 base substitutions per nucleotide) which is quite divergent (0.078 base substitutions per nucleotide) from that of black bears. High mitochondrial DNA divergence within black bears and paraphyletic relationships of brown and polar bear mitochondrial DNA indicate that intraspecific variation across species' ranges should be considered in phylogenetic analyses of mitochondrial DNA.

Canadian Journal of Zoology↗

USGS2016

Identification of the major capsid protein of erythrocytic necrosis virus (ENV) and development of quantitative real-time PCR assays for quantification of ENV DNA

Viral erythrocytic necrosis (VEN) is a disease of marine and anadromous fish that is caused by the erythrocytic necrosis virus (ENV), which was recently identified as a novel member of family Iridoviridae by next-generation sequencing. Phylogenetic analysis of the ENV DNA polymerase grouped ENV with other erythrocytic iridoviruses from snakes and lizards. In the present study, we identified the gene encoding the ENV major capsid protein (MCP) and developed a quantitative real-time PCR (qPCR) assay targeting this gene. Phylogenetic analysis of the MCP gene sequence supported the conclusion that ENV does not group with any of the currently described iridovirus genera. Because there is no information regarding genetic variation of the MCP gene across the reported host and geographic range for ENV, we also developed a second qPCR assay for a more conserved ATPase-like gene region. The MCP and ATPase qPCR assays demonstrated good analytical and diagnostic sensitivity and specificity based on samples from laboratory challenges of Pacific herring Clupea pallasii . The qPCR assays had similar diagnostic sensitivity and specificity as light microscopy of stained blood smears for the presence of intraerythrocytic inclusion bodies. However, the qPCR assays may detect viral DNA early in infection prior to the formation of inclusion bodies. Both qPCR assays appear suitable for viral surveillance or as a confirmatory test for ENV in Pacific herring from the Salish Sea.

Journal of Veterinary Diagnostic Investigation↗

USGS2015

Evaluating a satellite-based seasonal evapotranspiration product and identifying its relationship with other satellite-derived products and crop yield: A case study for Ethiopia

Satellite-derived evapotranspiration anomalies and normalized difference vegetation index (NDVI) products from Moderate Resolution Imaging Spectroradiometer (MODIS) data are currently used for African agricultural drought monitoring and food security status assessment. In this study, a process to evaluate satellite-derived evapotranspiration (ETa) products with a geospatial statistical exploratory technique that uses NDVI, satellite-derived rainfall estimate (RFE), and crop yield data has been developed. The main goal of this study was to evaluate the ETa using the NDVI and RFE, and identify a relationship between the ETa and Ethiopia’s cereal crop (i.e., teff, sorghum, corn/maize, barley, and wheat) yields during the main rainy season. Since crop production is one of the main factors affecting food security, the evaluation of remote sensing-based seasonal ETa was done to identify the appropriateness of this tool as a proxy for monitoring vegetation condition in drought vulnerable and food insecure areas to support decision makers. The results of this study showed that the comparison between seasonal ETa and RFE produced strong correlation ( R 2 > 0.99) for all 41 crop growing zones in Ethiopia. The results of the spatial regression analyses of seasonal ETa and NDVI using Ordinary Least Squares and Geographically Weighted Regression showed relatively weak yearly spatial relationships ( R 2 < 0.7) for all cropping zones. However, for each individual crop zones, the correlation between NDVI and ETa ranged between 0.3 and 0.84 for about 44% of the cropping zones. Similarly, for each individual crop zones, the correlation ( R 2 ) between the seasonal ETa anomaly and de-trended cereal crop yield was between 0.4 and 0.82 for 76% (31 out of 41) of the crop growing zones. The preliminary results indicated that the ETa products have a good predictive potential for these 31 identified zones in Ethiopia. Decision makers may potentially use ETa products for monitoring cereal crop yields and early warning of food insecurity during drought years for these identified zones.

International Journal of Applied Earth Observation↗

USGS2003

Biodiversity changes in Cretaceous palynofloras of eastern Asia and western North America

Palynology has great potential for providing comparative data and interpretations about changes in biodiversity during the Cretaceous Period. This is especially true for both eastern Asia and western North America because of strong floristic similarities that existed between these regions during Cretaceous time. Also, because palynomorphs of terrestrial origin can be deposited in offshore as well as terrestrial environments, significant potential exists for marine-to-continental palynostratigraphic correlations in both regions. Palynological biostratigraphy can improve the geologic dating of changes in biodiversity. During the Early Cretaceous, eastern Asia and western North America lay within the Cerebropollenites palynofloral province, a circumpolar phytogeographic zone characterized by distinctive palynological assemblages. During most of the Late Cretaceous, these regions lay within the palynofloristically unique Aquilapollenites Province, which was more restricted geographically than the Cerebropollenites Province. The most important development during Cretaceous time that is reflected in palynological assemblages was the rise of the angiosperms as the numerically and ecologically dominant forms of vegetation. The most striking short-term palynofloral event in the two regions was the sudden disappearance of species of Aquilapollenites and associated genera at the Cretaceous-Tertiary (K/T) boundary. Both of these occurrences produced major changes in biodiversity in the terrestrial realm. Geologic research in International Geological Correlation Program Project 434 can benefit from applications of palynostratigraphy. Palynologic research within Project 434 could include development of a comprehensive palynostratigraphic zonation for the Cretaceous, the definition of regional palynostratigraphic datums, and investigation of the record of floral change at the K/T boundary. ?? 2002 Elsevier Science Ltd. All rights reserved.

Journal of Asian Earth Sciences↗

USGS1978

Inventory of land use and land cover of the Puget Sound region using Landsat digital data

Landsat multispectral scanner digital data from four bands were analyzed using computers to produce land use and land cover information of the Puget Sound region, Wash., for use by agencies in that area. The data were first geographically registered to map coordinates. This registration enabled samples of known land cover types to be digitized from the maps. Samples of the same land cover were grouped together and then subdivided by cluster analysis into spectrally similar classes. Spectral categories were associated with specific land cover classes and used to determine spectral signatures for classification of the entire region. Reclustering and reclassification techniques were developed and then employed to minimize certain classification errors. The classified data were displayed in color using a film recorder. This color image was enlarged photographically to a 1:100000 scale to match new base maps of the region. Although the result resembles a conventional polygonal land use and land cover map, certain image-like qualities remain and yield additional information about the landscape.

Washington↗

USGS2018

High‐prevalence and low‐intensity Ichthyophonus infections in Pacific Halibut

Ichthyophonus occurred at high prevalence but low intensity in Pacific Halibut Hippoglossus stenolepis throughout the West Coast of North America, ranging from coastal Oregon to the Bering Sea. Infection prevalence in adults was variable on spatial and temporal scales, with the lowest prevalence typically occurring on the edges of the geographic range and highest prevalence consistently occurring inside Prince William Sound, Alaska (58–77%). Additionally, intra‐annual differences occurred at Albatross–Portlock, Alaska (71% versus 32% within 2012), and interannual differences occurred along coastal Oregon (50% in 2012 versus 12% in 2015). The infection prevalence was influenced by host age, increasing from 3% or less among the youngest cohorts (age ≤ 6) to 39–54% among age‐9–17 cohorts, then decreasing to 27% among the oldest (age‐18+) cohorts. There was little indication of significant disease impacts to Pacific Halibut, as the intensity of infection was uniformly low and length at age was similar between infected and uninfected cohorts. These results suggest that Ichthyophonus in Pacific Halibut currently represents a stable parasite–host paradigm in the North Pacific.

Journal of Aquatic Animal Health↗

USGS2010

Survival of breeding Pacific common eiders on the Yukon-Kuskokwim Delta, Alaska

Populations of Pacific common eiders ( Somateria mollissima v-nigrum ) breeding in Alaska, USA, have declined markedly over the past 40 years. We studied survival of adult female Pacific common eiders using capture—recapture of nesting hens at 3 sites on the Yukon-Kuskokwim Delta (YKD), Alaska from 1994 to 2004. We used data consisting of 268 recapture events from 361 uniquely marked individuals to investigate temporal, geographic, and environmental variation in adult female survival. Our results suggest apparent annual survival of adult eiders from the YKD was high (0.892, SE = 0.022) and spatially and temporally invariant (σ 2 = 0.005), a pattern consistent with other long-lived marine birds. Moreover, our results suggest adult survival may be functionally fixed for Pacific common eiders, and at the present, adult survival may be relatively unresponsive to environmental or management perturbations. Our data did not support hypothesized variation in survival relative to mortality factors such as predation on breeding grounds, physiologic costs of reproduction, and wintering conditions. Although changes in adult survival likely have a large potential effect on prospective population growth, our results suggest viable management actions aimed at increasing survival may be extremely limited.

Journal of Wildlife Management↗

USGS1977

Tertiary and Quaternary deposits at The Palisades, central Alaska

The Palisades of the Yukon River, located near the geographic center of Alaska, has long been an attraction to people traveling along the river. Numerous scientific field parties have viewed or visited the locality and published short accounts of their observations. The river bluffs are as much as 90 meters high and are composed of Tertiary lignite-rich sedimentary rocks and frozen Quaternary sand, silt, and gravel. Resampling and analysis of pollen show that the Tertiary rocks are Miocene rather than Miocene and Pliocene as previously thought. The Miocene flora, possessing a number of conifer and hardwood-tree types, was more varied than the present vegetation and indicates a warmer and wetter climate than at present. The area is frequently referred to as the boneyard because of the common occurrence of large bones of Pleistocene mammals within the frozen silts.

Alaska↗

USGS2026

Evaluating the U.S. Geological Survey’s earthquake shaking hazard forecasts and their implications on seismic risk

We analyze the last six update cycles of the long-term probabilistic earthquake shaking hazard forecast from the U.S. Geological Survey (USGS) and discuss the changes in hazard estimates from the 1996 to the latest 2023 update of the National Seismic Hazard Model (NSHM) for the conterminous U.S. We summarize how our understanding of earthquake hazards has evolved over the last two decades and quantify the implications of changing hazards on people, buildings, and lifeline infrastructure. The net effect of changes in hazard estimates, with reference to the mean hazard from the 2023 NSHM update that has 2% probability of exceedance in 50 years, suggests an overall increase in total geographic areas facing very strong shaking levels (modified Mercalli Intensity (MMI) of VII or more) when compared with any of the previous cycles. This increase puts ~159.2 million people (an increase from 111.8 million when using the 2018 NSHM), ~47.3 million residential buildings (an increase from 32.5 million with the 2018 NSHM), and ~$25.6 trillion of economic exposure of all buildings (an increase from $17.4 trillion when using the 2018 NSHM) at risk from earthquakes. We demonstrate that small changes in hazard estimates do not necessarily imply small changes in risk estimates. Therefore, changes in risk estimates can be used to highlight key USGS NSHM updates for improving risk mitigation efforts.

Earthquake Spectra Journal↗