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At least 379 records · Page 21Linked to original sources
USGS2009

Geography of Alaska lake districts: Identification, description, and analysis of lake-rich regions of a diverse and dynamic state

Lakes are abundant landforms and important ecosystems in Alaska, but are unevenly distributed on the landscape with expansive lake-poor regions and several lake-rich regions. Such lake-rich areas are termed lake districts and have landscape characteristics that can be considered distinctive in similar respects to mountain ranges. In this report, we explore the nature of lake-rich areas by quantitatively identifying Alaska’s lake districts, describing and comparing their physical characteristics, and analyzing how Alaska lake districts are naturally organized and correspond to climatic and geophysical characteristics, as well as studied and managed by people. We use a digital dataset (National Hydrography Dataset) of lakes greater than 1 hectare, which includes 409,040 individual lakes and represents 3.3 percent of the land-surface area of Alaska. The selection criteria we used to identify lake districts were (1) a lake area (termed limnetic ratio, in percent) greater than the mean for the State, and (2) a lake density (number of lakes per unit area) greater than the mean for the State using a pixel size scaled to the area of interest and number of lakes in the census. Pixels meeting these criteria were grouped and delineated and all groups greater than 1,000 square kilometers were identified as Alaska’s lake districts. These lake districts were described according to lake size-frequency metrics, elevation distributions, geology, climate, and ecoregions to better understand their similarities and differences. We also looked at where lake research and relevant ecological monitoring has occurred in Alaska relative to lake districts and how lake district lands and waters are currently managed. We identified and delineated 20 lake districts in Alaska representing 16 percent of the State, but including 65 percent of lakes and 75 percent of lake area. The largest lake districts identified are the Yukon-Kuskokwim Delta, Arctic Coastal Plain, and Iliamna lake districts with high limnetic ratios of 19, 17, and 21 percent, respectively. The three smallest districts we considered were Tetlin in the eastern interior, Menhiskof on the Alaska Peninsula, and Matanuska–Susitna at the head of Cook Inlet with limnetic ratios of 14, 9, and 9 percent, respectively. Lake density and limnetic ratio were poorly related among lake districts, such that some districts had a few large lakes like Iliamna with Lakes Iliamna and Becharof—the two largest in the State, compared to other districts with many very small lakes like Yukon-Kuskokwim Delta with 111,130 lakes and 63 percent of these less than 10 hectares. Most lake districts are in regions with relatively low precipitation, but temperature regimes varied widely among lake districts. Approximately one-half of lake districts were glaciated during the Pleistocene and similar numbers occur in regions classified as having continuous, discontinuous, and sporadic permafrost, or perennially unfrozen soils. Most districts are at low elevations (less than 250 meters) with two important exceptions being Tetlin with a mean elevation of 530 meters and Ahtna with a mean elevation of 760 meters. These higher elevation districts, particularly Ahtna, had distinct characteristics from other lake districts such as continuous permafrost and Pleistocene glaciation. Several lake districts share similar boundaries to defined ecoregions with lake districts occurring in less than one-half of these 32 ecoregions of Alaska. Most lake districts are lands fully or partly managed by the U.S. Fish and Wildlife Service and the National Park Service, with other land management by the Bureau of Land Management and State and borough government. Much of the U.S. Geological Survey’s lake water-quality sampling efforts has been done in the Arctic Coastal Plain, Matanuska-Susitna, and Iliamna districts but no recorded collections in nine lake districts. Similarly, most lake limnological studies in Alaska were site-specific and represent only a small portion of Alaska’s lake districts. This identification, characterization, and analysis of lake-rich regions may help provide a template to guide future limnological and other scientific research for Alaska.

Alaska↗
USGS2022

Cryptic extinction risk in a western Pacific lizard radiation

Cryptic ecologies, the Wallacean Shortfall of undocumented species’ geographical ranges and the Linnaean Shortfall of undescribed diversity, are all major barriers to conservation assessment. When these factors overlap with drivers of extinction risk, such as insular distributions, the number of threatened species in a region or clade may be underestimated, a situation we term ‘cryptic extinction risk’. The genus Lepidodactylus is a diverse radiation of insular and arboreal geckos that occurs across the western Pacific. Previous work on Lepidodactylus showed evidence of evolutionary displacement around continental fringes, suggesting an inherent vulnerability to extinction from factors such as competition and predation. We sought to (1) comprehensively review status and threats, (2) estimate the number of undescribed species, and (3) estimate extinction risk in data deficient and candidate species, in Lepidodactylus . From our updated IUCN Red List assessment, 60% of the 58 recognized species are threatened (n = 15) or Data Deficient (n = 21), which is higher than reported for most other lizard groups. Species from the smaller and isolated Pacific islands are of greatest conservation concern, with most either threatened or Data Deficient, and all particularly vulnerable to invasive species. We estimated 32 undescribed candidate species and linear modelling predicted that an additional 18 species, among these and the data deficient species, are threatened with extinction. Focusing efforts to resolve the taxonomy and conservation status of key taxa, especially on small islands in the Pacific, is a high priority for conserving this remarkably diverse, yet poorly understood, lizard fauna. Our data highlight how cryptic ecologies and cryptic diversity combine and lead to significant underestimation of extinction risk.

Biodiversity and Conservation↗
USGS2013

Evapotranspiration from marsh and open-water sites at Upper Klamath Lake, Oregon, 2008--2010

Water allocation in the Upper Klamath Basin has become difficult in recent years due to the increase in occurrence of drought coupled with continued high water demand. Upper Klamath Lake is a central component of water distribution, supplying water downstream to the Klamath River, supplying water for irrigation diversions, and providing habitat for various species within the lake and surrounding wetlands. Evapotranspiration (ET) is a major component of the hydrologic budget of the lake and wetlands, and yet estimates of ET have been elusive—quantified only as part of a lumped term including other substantial water-budget components. To improve understanding of ET losses from the lake and wetlands, measurements of ET were made from May 2008 through September 2010. The eddy-covariance method was used to monitor ET at two wetland sites continuously during this study period and the Bowen-ratio energy-balance method was used to monitor open-water lake evaporation at two sites during the warmer months of the 3 study years. Vegetation at one wetland site (the bulrush site) consists of a virtual monoculture of hardstem bulrush (formerly Scirpus acutus, now Schoenoplectus acutus), and at the other site (the mixed site) consists of a mix of about 70 percent bulrush, 15 percent cattail (Typha latifolia), and 15 percent wocus (Nuphar polysepalum). Measured ET at these two sites was very similar (means were ±2.5 percent) and mean wetland ET is computed as a 70 to 30 percent weighted average of the bulrush and mixed sites, respectively, based on community-type distribution estimated from satellite imagery. Biweekly means of wetland ET typically vary from maximum values of around 6 to 7 millimeters per day during midsummer, to minimum values of less than 1 mm/d during midwinter. This strong annual signal primarily reflects life-cycle changes in the wetland vegetation, and the annual variation of radiative input to the surface and resulting temperature. The perennial vegetation begins each growing season submerged, emerges from the dead litter mat around late May or early June, reaches a maximum height of about 2.2 meters (m) during summer, senesces in October, and subsequently lodges over, contributing to the dead litter mat from previous years. Hydroperiods last about 5 to 6 months, typically beginning in January or February and ending in July or August, and have a minor influence on the annual ET cycle. These hydroperiods result from lake levels that typically vary about 1.3 m, from around 0.6 to 0.9 m above the wetland surface, to around 0.4 to 0.7 m below the wetland surface. An estimate of 3-year annual wetland ET, made by substituting early- and late-season data measured during 2009 for the missing periods in early 2008 and late 2010, is 0.938 meter per year (m/yr). Daily values of alfalfa-based reference ET (ET r ) were retrieved from the Bureau of Reclamation AgriMet Web site (http://www.usbr.gov/pn/agrimet/index.html) and are aggregated into biweekly, annual, and 3-year values (for consistency, the 3-year values are also computed using substitute data from 2009 for early 2008 and late 2010). These ET r values are computed from weather data measured at the nearby Agency Lake weather station (AGKO), and are based on the assumption that the alfalfa crop is green and vigorous year-round. The 3-year value of ET r is 1.145 m/yr, about 22 percent greater than wetland ET. A comparison of 2008–2010 alfalfa and pasture growing season actual ET with wetland ET is made using data from the more distant Klamath Falls AgriMet weather station (KFLO) because actual alfalfa and pasture ET are not computed for the AGKO site. During the 190-day average alfalfa growing season, wetland ET (0.779 m) is about 7 percent less than alfalfa ET (0.838 m). During the 195-day average pasture growing season, wetland ET (0.789 m) is about 18 percent greater than pasture ET (0.671 m). Assuming alfalfa and pasture ET are equal to wetland ET during the non-growing season, annual estimates become 0.997 m, 0.938 m, and 0.820 m from alfalfa, wetland, and pasture, respectively. Wetland crop coefficients (K c =ET/ET r ) are computed at daily, biweekly, and annual time steps. Approximate formulas are given to estimate daily values of growing season Kc, thereby allowing computation of daily growing season ET using ET r from the AGKO weather station. Biweekly values of growing season Kc are computed from ensemble average values of ET and ET r during the 3 study period growing seasons, and a single, mean Kc is computed for the non-growing season. Together, these provide relatively accurate estimates of biweekly ET during the study (RMSE=0.396 and 0.347 mm/d, r2 = 62 and 0.971 at the bulrush and mixed sites, respectively). A fourth-order polynomial fit of the biweekly growing season values to day of year provides a more automated form of ET computation. Measured ET at the bulrush wetland site during the current study compares very closely with growing-season ET estimated during a study in 1997 at nearly the same location. During the earlier study, ET was measured four times, using eddy covariance for 1- to 2-day periods, and was estimated between measurement periods using a Penman-Monteith model, calibrated to the measurements. Differences between time series of ET from the two studies are similar to interannual differences within the current study. Compared to the 1997 study, the current study measured larger ET rates in early summer and smaller rates in late summer, resulting in very similar growing-season totals. A study conducted in 2000 estimated ET from nearby fallowed cropland, using the Bowen-ratio energy balance method supplemented with Priestley-Taylor and crop-coefficient ET modeling. Seasonal timing of ET from three different crop types varied considerably, but growing-season totals were remarkably similar, at 0.435 ± 0.009 m. Wetland ET measured during the current study, evaluated over the same growing season was 0.718 m, or about 65 percent greater than the fallowed cropland ET. Open-water evaporation from Upper Klamath Lake was measured at two locations during the warmer months of 2008–2010 using the Bowen-ratio energy balance method. Measured rates were in general agreement with those measured in 2003 using the same method. Open-water evaporation and wetland ET were nearly equal during late June through early August, when wetland vegetation was green and abundant. As expected, open-water evaporation consistently exceeded wetland ET during late summer, as wetland ET responded to vegetation senescence while open water evaporation responded to extra available energy in the form of heat previously stored in the lake. Overall, open-water evaporation was 20 percent greater than wetland ET during the same period.

Oregon↗
USGS2015

Distribution and dynamics of mangrove forests of South Asia

Mangrove forests in South Asia occur along the tidal sea edge of Bangladesh, India, Pakistan, and Sri Lanka. These forests provide important ecosystem goods and services to the region's dense coastal populations and support important functions of the biosphere. Mangroves are under threat from both natural and anthropogenic stressors; however the current status and dynamics of the region's mangroves are poorly understood. We mapped the current extent of mangrove forests in South Asia and identified mangrove forest cover change (gain and loss) from 2000 to 2012 using Landsat satellite data. We also conducted three case studies in Indus Delta (Pakistan), Goa (India), and Sundarbans (Bangladesh and India) to identify rates, patterns, and causes of change in greater spatial and thematic details compared to regional assessment of mangrove forests. Our findings revealed that the areal extent of mangrove forests in South Asia is approximately 1,187,476 ha representing ∼7% of the global total. Our results showed that from 2000 to 2012, 92,135 ha of mangroves were deforested and 80,461 ha were reforested with a net loss of 11,673 ha. In all three case studies, mangrove areas have remained the same or increased slightly, however, the turnover was greater than the net change. Both, natural and anthropogenic factors are responsible for the change and turnover. The major causes of forest cover change are similar throughout the region; however, specific factors may be dominant in specific areas. Major causes of deforestation in South Asia include (i) conversion to other land use (e.g. conversion to agriculture, shrimp farms, development, and human settlement), (ii) over-harvesting (e.g. grazing, browsing and lopping, and fishing), (iii) pollution, (iv) decline in freshwater availability, (v) floodings, (vi) reduction of silt deposition, (vii) coastal erosion, and (viii) disturbances from tropical cyclones and tsunamis. Our analysis in the region's diverse socio-economic and environmental conditions highlights complex patterns of mangrove distribution and change. Results from this study provide important insight to the conservation and management of the important and threatened South Asian mangrove ecosystem.

Journal of Environmental Management↗
USGS2019

Biotic interactions are the dominant drivers of phylogenetic and functional structure in bird communities along a tropical elevational gradient

Understanding how biotic and abiotic interactions influence community assembly and composition is a fundamental goal in community ecology. Addressing this issue is particularly tractable along elevational gradients in tropical mountains that feature substantial abiotic gradients and rates of species turnover. We examined elevational patterns of avian community structure on 2 mountains in Malaysian Borneo to assess changes in the relative strength of biotic interactions and abiotic constraints. In particular, we used metrics based on (1) phylogenetic relatedness and (2) functional traits associated with both resource acquisition and tolerance of abiotic challenges to identify patterns and causes of elevational differences in community structure. High elevation communities were composed of more phylogenetically and functionally similar species than would be expected by chance. Resource acquisition traits, in particular, were clustered at high elevations, suggesting low resource and habitat diversity were important drivers of those communities. Traits typically associated with tolerance of cold temperatures and low atmospheric pressure showed no elevational patterns. All traits were neutral or overdispersed at low elevations suggesting an absence of strong abiotic filters or an increased influence of interspecific competition. However, relative bill size, which is important for thermoregulation, was larger in low elevation communities, suggesting abiotic factors were also influential there. Regardless of metric, clustered and neutral communities were more frequent than overdispersed communities overall, implying that interspecific competition among close relatives may not be a pervasive driver of elevational distribution and community structure of tropical birds. Overall, our analyses reveal that a diverse set of predominantly biotic factors underlie elevational variation in community structure on tropical mountains.

Kinabalu Park, Mt. Kinabalu, Mt. Tambuyukon↗
USGS2020

Genetic diversity, population structure, and historical demography of a highly vagile and human‐impacted seabird in the Pacific Ocean: The red‐tailed tropicbird, Phaethon rubricauda

Many seabird breeding colonies have recovered from heavy anthropogenic disturbance after conservation actions. The widely distributed red‐tailed tropicbird, Phaethon rubricauda , was used as a model species to assess potential anthropogenic impacts on the genetic diversity of breeding colonies in the Pacific Ocean. Cytochrome c oxidase subunit I and control region sequences analyses were conducted across the range of the species in the Pacific Ocean. The study sites were at islands without human‐related disturbance (non‐impacted islands) and with human‐related disturbance (impacted islands). We hypothesized that (i) breeding colonies of the red‐tailed tropicbird on impacted islands have lower genetic diversity compared with colonies on non‐impacted islands, and (ii) breeding colonies of the red‐tailed tropicbird show significant fine and broad‐scale genetic structure across the Pacific Ocean. Bayesian skyline analyses were conducted to infer past changes in population sizes. Genetic diversity was similar between impacted and non‐impacted islands. There was significant broad‐scale genetic structure among colonies separated by over 6,000 km, but a lack of significant fine‐scale genetic structure within Australasia and Hawai'i, although a significant level of differentiation was found within Chile with Φ ST analyses. Skyline analyses showed that effective population sizes remained relatively constant through time, but experienced either a slight decrease or the end of an expansion event through the last 1,000 years. These changes may be related to the arrival of humans on Pacific islands. Impacted islands may have received immigrants from other relatively close islands, buffering the loss of genetic diversity. However, it is also possible that colonies have retained ancestral variation or that a large effective population size coupled with a long generation time (13 years) has prevented the loss of genetic diversity in human‐impacted islands. Future research using higher‐resolution markers is needed to resolve the population genetic structure of the red‐tailed tropicbird in an ecological time‐scale.

Hawaii↗
USGS2015

Establishing conservation baselines with dynamic distribution models for bat populations facing imminent decline

Aim Bat mortality rates from white-nose syndrome and wind power development are unprecedented. Cryptic and wide-ranging behaviours of bats make them difficult to survey, and population estimation is often intractable. We advance a model-based framework for making spatially explicit predictions about summertime distributions of bats from capture and acoustic surveys. Motivated by species-energy and life-history theory, our models describe hypotheses about spatio-temporal variation in bat distributions along environmental gradients and life-history attributes, providing a statistical basis for conservation decision-making. Location Oregon and Washington, USA. Methods We developed Bayesian hierarchical models for 14 bat species from an 8-year monitoring dataset across a ~430,000 km 2 study area. Models accounted for imperfect detection and were temporally dynamic. We mapped predicted occurrence probabilities and prediction uncertainties as baselines for assessing future declines. Results Forest cover, snag abundance and cliffs were important predictors for most species. Species occurrence patterns varied along elevation and precipitation gradients, suggesting a potential hump-shaped diversity–productivity relationship. Annual turnover in occurrence was generally low, and occurrence probabilities were stable among most species. We found modest evidence that turnover covaried with the relative riskiness of bat roosting and migration. The fringed myotis ( Myotis thysanodes ), canyon bat ( Parastrellus hesperus ) and pallid bat ( Antrozous pallidus ) were rare; fringed myotis occurrence probabilities declined over the study period. We simulated anticipated declines to demonstrate that mapped occurrence probabilities, updated over time, provide an intuitive way to assess bat conservation status for a broad audience. Main conclusions Landscape keystone structures associated with roosting habitat emerged as regionally important predictors of bat distributions. The challenges of bat monitoring have constrained previous species distribution modelling efforts to temporally static presence-only approaches. Our approach extends to broader spatial and temporal scales than has been possible in the past for bats, making a substantial increase in capacity for bat conservation.

Oregon, Washington↗
USGS2024

How, what, and where you sample environmental DNA affects diversity estimates and species detection

Environmental DNA (eDNA) is a complex mixture of DNA, varying in particle sizes and distributed heterogeneously in aquatic systems. Optimizing eDNA sampling is crucial for maximizing species detection, particularly in high-risk scenarios like invasive species management. In this study, we compare two eDNA sampling methods - namely tow net and grab sample, where the tow nets process large volumes of water (3500–7000 L) through a 64 μm pore size and the grab samples process 1 L sample at a single point through 0.45–1.2 μm pore size membranes. We compared these methods to ascertain what most influences (1) the detection of invasive species ( Dreissena mussels and Burmese pythons) using qPCR or ddPCR and (2) total diversity monitoring of metazoan, protist, and fungi community using a COI marker and plant communities using the ITS marker. Sampling was conducted across a wide geography and diverse aquatic environments in Minnesota and Florida, USA, and Switzerland. The tow net samples had significantly higher eDNA yield compared to grab samples; however, they exhibited equal or lower alpha diversity of OTUs (Operational Taxonomic Units). The two sampling methods measured different beta diversity of communities detected with the COI marker across all three regions, highlighting the impact of the sampling method on the diversity of eDNA captured. In comparison, the beta diversity of plant eDNA was less impacted by the sampling method. We found no clear difference in detection for the invasive species targets based on the eDNA sampling method. These results underscore the need for pilot studies before conducting biodiversity inventory and monitoring, and a need for a greater understanding of not just how much, but also what, eDNA is captured depending on method choice, considering both spatial and particle size heterogeneity.

Florida, Minnesota↗
USGS2024

Fewer bowl traps and more hand netting can increase effective number of bee species and reduce excessive captures

Reports increasingly point to substantial declines in wild bee abundance and diversity, yet there is uncertainty about how best to measure these attributes in wild bee populations. Two commonly used methods are passive trapping with bee bowls or active netting of bees on flowers, but each of these has drawbacks. Comparing the outcomes of the two methods is complicated by their uncomparable units of effort. The abundance distribution of bee species is also typically highly skewed, making it difficult to accurately assess diversity when rarer species are unlikely to be caught. The effective number of species, or Hill numbers, provides a way forward by basing the response metric on the number of equally abundant species. Our goal is to compare the effective number of bee species captured between hand netting and bowl trapping in wheatgrass prairie in South Dakota and tallgrass prairie in Minnesota, USA. Species overlap between the two methods ranged from ~40% to ~60%. Emphasis placed on rare species was important, so that 95% confidence limits overlapped between the two methods for species richness but netting exceeded trapping for Shannon's and Simpson's diversities. Netting always captured more bee species with fewer bee individuals than trapping. In most cases, the number of bees captured in bowl traps indicated substantial over-sampling, with little increase in bee species detected. Correlations between bee and floral abundance, richness, and diversity differed between netted and trapped samples. We conclude that netting and trapping together produce a more complete account of species richness, but shifting sampling emphasis from trapping to netting will result in fewer bees, but more bee species captured. Due to the different relationships between bee and floral diversities that depended on sampling method, it is unwise to compare habitat associations determined by netting with those determined by trapping.

Ecology and Evolution↗
USGS2022

Evolutionary ecology of fire

Fire has been an ecosystem process since plants colonized land over 400 million years ago. Many diverse traits provide a fitness benefit following fires, and these adaptive traits vary with the fire regime. Some of these traits enhance fire survival, while others promote recruitment in the postfire environment. Demonstrating that these traits are fire adaptations is challenging, since many arose early in the paleontological record, although increasingly better fossil records and phylogenetic analysis make timing of these trait origins to fire more certain. Resprouting from the base of stems is the most widely distributed fire-adaptive trait, and it is likely to have evolved under a diversity of disturbance types. The origins of other traits like serotiny, thick bark, fire-stimulated germination, and postfire flowering are more tightly linked to fire. Fire-adaptive traits occur in many environments: boreal and temperate forests, Mediterranean-type climate (MTC) shrublands, savannas, and other grasslands. MTC ecosystems are distinct in that many taxa in different regions have lost the resprouting ability and depend solely on postfire recruitment for postfire recovery. This obligate seeding mode is perhaps the most vulnerable fire-adaptive syndrome in the face of current global change, particularly in light of increasing anthropogenic fire frequency.

Annual Review of Ecology, Evolution, and Systemati↗
USGS2011

Factors affecting the occurrence of saugers in small, high-elevation rivers near the western edge of the species' natural distribution

Factors affecting the occurrence of saugers Sander canadensis were studied throughout the Wind River basin, a high-elevation watershed (> 1,440 m above mean sea level) on the western periphery of the species' natural distribution in central Wyoming. Adult saugers appeared to have a contiguous distribution over 170 km of streams among four rivers in the watershed. The upstream boundaries of sauger distribution were influenced by summer water temperatures and channel slopes in two rivers and by water diversion dams that created barriers to upstream movement in the other two rivers. Models that included summer water temperature, maximum water depth, habitat type (pool or run), dominant substrate, and alkalinity accounted for the variation in sauger occurrence across the watershed within the areas of sauger distribution. Water temperature was the most important basin-scale habitat feature associated with sauger occurrence, and maximum depth was the most important site-specific habitat feature. Saugers were found in a larger proportion of pools than runs in all segments of the watershed and occurred almost exclusively in pools in upstream segments of the watershed. Suitable summer water temperatures and deep, low-velocity habitat were available to support saugers over a large portion of the Wind River watershed. Future management of saugers in the Wind River watershed, as well as in other small river systems within the species' native range, should involve (1) preserving natural fluvial processes to maintain the summer water temperatures and physical habitat features needed by saugers and (2) assuring that barriers to movement do not reduce upstream boundaries of populations.

Transactions of the American Fisheries Society↗
USGS1996

Taxonomic structure and productivity of phytoplankton assemblages in Crater Lake, Oregon

Interactions among physical, chemical, and biological components and processes in Crater Lake result in a complex and dynamic ecosystem. In winter and spring, wind energy mixes the lake to a depth of about 200 m. During this period, episodic sinking of cold water below the depth of 200 m produces an upwelling of nutrient-rich water from the deep lake, a process that has a strong influence on the concentrations of nutrients available to phytoplankton in the euphotic zone. Patterns of upwelling are variable from year to year, and physical data indicate that water from the deep lake is completely mixed with surface water every 1–4 years. Phytoplankton cell biovolume and total chlorophyll are distributed uniformly to the depth of 200 m in winter and spring, at which time maximum rates of primary production occur in the upper 60 m of the water column. The onset of thermal stratification in July is associated with development of a chlorophyll maximum at depths between 100 and 140 m and a downward shift of the primary production maximum to depths between 60 and 100 m. Thermal stratification also is accompanied by a stratified distribution of phytoplankton populations that is characterized by assemblages with low species diversity and high dominance in the epilimnion and assemblages with higher diversity and lower dominance in the metalimnion and upper hypolimnion. Therefore, the thermal properties of the upper 200 m of Crater Lake, and associated changes in light and nutrients with increasing depth, are closely related to structural and functional attributes of phytoplankton assemblages in the water column.

Journal of Lake and Reservoir Management↗
USGS2016

Wetlands: Tidal

Tidal wetlands are some of the most dynamic areas of the Earth and are found at the interface between the land and sea. Salinity, regular tidal flooding, and infrequent catastrophic flooding due to storm events result in complex interactions among biotic and abiotic factors. The complexity of these interactions, along with the uncertainty of where one draws the line between tidal and nontidal, makes characterizing tidal wetlands a difficult task. The three primary types of tidal wetlands are tidal marshes, mangroves, and freshwater forested wetlands. Tidal marshes are dominated by herbaceous plants and are generally found at middle to high latitudes of both hemispheres. Mangrove forests dominate tropical coastlines around the world while tidal freshwater forests are global in distribution. All three wetland types are highly productive ecosystems, supporting abundant and diverse faunal communities. Unfortunately, these wetlands are subject to alteration and loss from both natural and anthropogenic causes.

Book chapter↗
USGS2006

An integrated chronostratigraphic data system for the twenty-first century

Research in stratigraphy is increasingly multidisciplinary and conducted by diverse research teams whose members can be widely separated. This developing distributed-research process, facilitated by the availability of the Internet, promises tremendous future benefits to researchers. However, its full potential is hindered by the absence of a development strategy for the necessary infrastructure. At a National Science Foundation workshop convened in November 2001, thirty quantitative stratigraphers and database specialists from both academia and industry met to discuss how best to integrate their respective chronostratigraphic databases. The main goal was to develop a strategy that would allow efficient distribution and integration of existing data relevant to the study of geologic time. Discussions concentrated on three major themes: database standards and compatibility, strategies and tools for information retrieval and analysis of all types of global and regional stratigraphic data, and future directions for database integration and centralization of currently distributed depositories. The result was a recommendation to establish an integrated chronostratigraphic database, to be called Chronos, which would facilitate greater efficiency in stratigraphic studies (http://www.chronos.org/) . The Chronos system will both provide greater ease of data gathering and allow for multidisciplinary synergies, functions of fundamental importance in a variety of research, including time scale construction, paleoenvironmental analysis, paleoclimatology and paleoceanography. Beyond scientific research, Chronos will also provide educational and societal benefits by providing an accessible source of information of general interest (e.g., mass extinctions) and concern (e.g., climatic change). The National Science Foundation has currently funded a three-year program for implementing Chronos.. ?? 2006 Geological Society of America. All rights reserved.

Special Paper of the Geological Society of America↗
USGS2012

Molecular detection of hematozoa infections in tundra swans relative to migration patterns and ecological conditions at breeding grounds

Tundra swans ( Cygnus columbianus ) are broadly distributed in North America, use a wide variety of habitats, and exhibit diverse migration strategies. We investigated patterns of hematozoa infection in three populations of tundra swans that breed in Alaska using satellite tracking to infer host movement and molecular techniques to assess the prevalence and genetic diversity of parasites. We evaluated whether migratory patterns and environmental conditions at breeding areas explain the prevalence of blood parasites in migratory birds by contrasting the fit of competing models formulated in an occupancy modeling framework and calculating the detection probability of the top model using Akaike Information Criterion (AIC). We described genetic diversity of blood parasites in each population of swans by calculating the number of unique parasite haplotypes observed. Blood parasite infection was significantly different between populations of Alaska tundra swans, with the highest estimated prevalence occurring among birds occupying breeding areas with lower mean daily wind speeds and higher daily summer temperatures. Models including covariates of wind speed and temperature during summer months at breeding grounds better predicted hematozoa prevalence than those that included annual migration distance or duration. Genetic diversity of blood parasites in populations of tundra swans appeared to be relative to hematozoa prevalence. Our results suggest ecological conditions at breeding grounds may explain differences of hematozoa infection among populations of tundra swans that breed in Alaska.

Alaska↗
USGS2019

Where has turtle ecology been, and where is it going?

Over 9000 articles have been published on turtles and tortoises (excluding sea turtles) since 1950 according to the Web of Science, including over 8000 contained in a personal bibliography that we analyze in this paper. Research had a slow start from 1900 to 1950, with mostly anecdotal additions to our knowledge until the contributions of F. Cagle and A. Carr took turtle research to new levels as the cofathers of turtle ecology in the middle of the last century. Books written in 1939, 1952, and 1972 that compiled existing literature on turtles in the United States and Canada set the stage for growing interest in turtles. The first global compilation of turtle species did not become available until 1961. Publication frequency increased in the 1960s and especially the 1970s as interest in turtles grew, and a wave of turtle biologists emerged from doctoral degree programs. We briefly review the contributions of scientists who published extensively on turtle ecology in those and later decades up to the present. We also review advances in our knowledge of various topics, including the global distribution of turtle research efforts; changes in our perceptions of turtle species diversity over time; turtle community ecology; sex ratios, sex-determination, and climate change; overwintering behavior; sexual size dimorphism and sexual dichromatism; analyses of population genetics; turtles and vocalization; and the emergence of turtle conservation biology efforts. We conclude with a discussion of future opportunities and challenges for working with turtles.

Herpetologica↗
USGS2026

Strategic approach for bird restoration evaluation - FY 2025 annual report

The Deepwater Horizon oil spill (hereafter “ spill ”) resulted in an estimated loss of 56,141–102,399 birds across 93 species along the U.S. Gulf of America coast. Injured species included those that nest locally along the northern Gulf of America coast as well as species that nest hundreds or thousands of kilometers outside of the region. The breadth of injury and the expansive geographic distribution of birds affected by the spill necessitated implementation of numerous and diverse projects designed to restore the injury of all affected bird species. As of September 2025, the Trustees, who are authorized to act on behalf of the public to restore injuries caused by the spill , have approved 39 projects, amounting to >60% of the total funds specifically allocated for bird restoration (i.e., Bird Restoration Type funding). Strategic allocation of remaining Bird Restoration Type funding is necessary to ensure that restoration of all injured bird species is achieved. An essential component of planning for future restoration is understanding the progress made from restoration actions conducted to date. The purpose of this project is to develop a plan that assesses the current restoration progress for each of the 93 injured species based on available data. The restoration assessment plan will be derived from a data gap analysis that identifies species for which data may be insufficient to assess restoration progress. This project will also allow Trustees to review and update the indicators of restoration success developed for injured bird species (e.g., population counts, reproduction metrics) that are used to evaluate restoration progress.

Annual Report↗