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At least 379 records · Page 21Linked to original sources

USGS2015

Coral 13C/12C records of vertical seafloor displacement during megathrust earthquakes west of Sumatra

The recent surge of megathrust earthquakes and tsunami disasters has highlighted the need for a comprehensive understanding of earthquake cycles along convergent plate boundaries. Space geodesy has been used to document recent crustal deformation patterns with unprecedented precision, however the production of long paleogeodetic records of vertical seafloor motion is still a major challenge. Here we show that carbon isotope ratios ( ) in the skeletons of massive Porites corals from west Sumatra record abrupt changes in light exposure resulting from coseismic seafloor displacements. Validation of the method is based on the coral response to uplift (and subsidence) produced by the March 2005 M w 8.6 Nias–Simeulue earthquake, and uplift further south around Sipora Island during a M&sim;8.4 megathrust earthquake in February 1797. At Nias, the average step-change in coral was 0.6±0.1&permil;/m for coseismic displacements of +1.8 m and −0.4 m in 2005. At Sipora, a distinct change in Porites microatoll growth morphology marks coseismic uplift of 0.7 m in 1797. In this shallow water setting, with a steep light attenuation gradient, the step-change in microatoll is 2.3&permil;/m , nearly four times greater than for the Nias Porites . Considering the natural variability in coral skeletal , we show that the lower detection limit of the method is around 0.2 m of vertical seafloor motion. Analysis of vertical displacement for well-documented earthquakes suggests this sensitivity equates to shallow events exceeding M w &sim;7.2 in central megathrust and back-arc thrust fault settings. Our findings indicate that the coral paleogeodesy technique could be applied to convergent tectonic margins throughout the tropical western Pacific and eastern Indian oceans, which host prolific coral reefs, and some of the world's greatest earthquake catastrophes. While our focus here is the link between coral , light exposure and coseismic crustal deformation, the same principles could be used to characterize interseismic strain during earthquake cycles over the last several millennia.

Earth and Planetary Science Letters↗

USGS2020

Identifying mangrove-coral habitats in the Florida Keys

Coral reefs are degrading due to many synergistic stressors. Recently there have been a number of global reports of corals occupying mangrove habitats that provide a supportive environment or refugium for corals, sheltering them by reducing stressors such as oxidative light stress and low pH. This study used satellite imagery and manual ground-truthing surveys to search for mangrove-coral habitats in the Florida Keys National Marine Sanctuary and then collected basic environmental parameters (temperature, salinity, dissolved oxygen, pH NBS , turbidity) at identified sites using a multi-parameter water quality sonde. Two kinds of mangrove-coral habitats were found in both the Upper and Lower Florida Keys: (1) prop-root corals, where coral colonies were growing directly on (and around) mangrove prop roots, and (2) channel corals, where coral colonies were growing in mangrove channels under the shade of the mangrove canopy, at deeper depths and not in as close proximity to the mangroves. Coral species found growing on and directly adjacent to prop roots included Porites porites (multiple morphs, including P. divaricata and P. furcata ), Siderastrea radians , and Favia fragum . Channel coral habitats predominantly hosted S. radians and a few S. siderea , although single colonies of Solenastrea bournoni and Stephanocoenia intersepta were observed. Although clear, low-turbidity water was a consistent feature of these mangrove-coral habitats, the specific combination of environmental factors that determine which mangrove habitats are favorable for coral recruitment remains to be defined. Circumstantial evidence suggests additional coral communities existed on mangrove shorelines of oceanside and backcountry islands until destroyed, likely by Hurricane Irma. These mangrove-coral habitats may be climate refugia for corals and could be included in ecosystem management plans and considered for their applications in coral restoration.

Florida↗

USGS2017

Twentieth century warming of the tropical Atlantic captured by Sr-U paleothermometry

Coral skeletons are valuable archives of past ocean conditions. However, interpretation of coral paleotemperature records is confounded by uncertainties associated with single-element ratio thermometers, including Sr/Ca. A new approach, Sr-U, uses U/Ca to constrain the influence of Rayleigh fractionation on Sr/Ca. Here we build on the initial Pacific Porites Sr-U calibration to include multiple Atlantic and Pacific coral genera from multiple coral reef locations spanning a temperature range of 23.15–30.12°C. Accounting for the wintertime growth cessation of one Bermuda coral, we show that Sr-U is strongly correlated with the average water temperature at each location ( r 2 = 0.91, P < 0.001, n = 19). We applied the multispecies spatial calibration between Sr-U and temperature to reconstruct a 96 year long temperature record at Mona Island, Puerto Rico, using a coral not included in the calibration. Average Sr-U derived temperature for the period 1900–1996 is within 0.12°C of the average instrumental temperature at this site and captures the twentieth century warming trend of 0.06°C per decade. Sr-U also captures the timing of multiyear variability but with higher amplitude than implied by the instrumental data. Mean Sr-U temperatures and patterns of multiyear variability were replicated in a second coral in the same grid box. Conversely, Sr/Ca records from the same two corals were inconsistent with each other and failed to capture absolute sea temperatures, timing of multiyear variability, or the twentieth century warming trend. Our results suggest that coral Sr-U paleothermometry is a promising new tool for reconstruction of past ocean temperatures.

Puerto Rico↗

USGS2020

Reestablishing a stepping-stone population of the threatened elkhorn coral Acropora palmata to aid regional recovery

Recovery of the elkhorn coral Acropora palmata is critical to reversing coral reef ecosystem collapse in the western Atlantic, but the species is severely threatened. To gauge potential for the species’ restoration in Florida, USA, we conducted an assisted migration experiment where 50 coral fragments of 5 nursery-raised genetic strains (genets) from the upper Florida Keys were moved to 5 sites across 350 km of the offshore reef. Additionally, 4 fragments from the 1 remaining colony of A. palmata in Dry Tortugas National Park (DRTO) were added to the 2 DRTO experimental sites to test for local adaptation. To measure coral performance, we tracked coral survival, calcification, growth, and condition from May 2018 to October 2019. All 24 corals relocated to the DRTO sites survived and calcified ~85% faster than the fewer surviving corals transplanted to the 2 upper Keys sites. While coral survival across the entire experiment did not depend on genet, there was a weak but statistically significant genetic effect on calcification rate among the corals relocated to DRTO. The DRTO native genet was among the fastest growing genets, but it was not the fastest, suggesting a lack of local adaptation at this scale. Our results indicate that DRTO, a remote reef system inhabited by the species during the Holocene and located at the nexus of major ocean currents, may be a prime location for reestablishing A. palmata . Assisted migration of A. palmata to DRTO could restore a sexually reproducing population in <10 yr, thereby promoting the species’ regional recovery.

Florida↗

USGS2000

Is Acropora palmata (elkhorn coral) making a comeback in the Virgin Islands?

White band disease (WBD) ravaged Acropora palmata (elkhorn coral) on many coral reefs in the Caribbean in the late 1970’s and 1980’s, including those around St. John and St. Croix, U. S. Virgin Islands—USVI (Gladfelter 1982, Rogers 1985). Quantitative data, photographs, and anecdotal observations indicate WBD killed large stands of elkhorn coral in the USVI from about 1976 until sometime in the late 1980’s. Branching Acroporid species, which are most susceptible to WBD, are also the most vulnerable to storm damage (Rogers et al. 1982). Since 1979, eight hurricanes have passed near or over the USVI. Because elkhorn coral contributed most of the living coral and determined the physical structure of many shallow reef zones, its demise dramatically altered many areas. But now, some of the reefs in the Virgin Islands once again have large, actively growing colonies of this important, reef-building species.

Buck Island Reef National Monument, Saint Croix, S↗

USGS2002

Degradation of marine ecosystems and decline of fishery resources in marine protected areas in the US Virgin Islands

The large number of marine protected areas (MPAs) in the Caribbean (over 100) gives a misleading impression of the amount of protection the reefs and other marine resources in this region are receiving. This review synthesizes information on marine resources in two of the first MPAs established in the USA, namely Virgin Islands National Park (1962) and Buck Island Reef National Monument (1961), and provides compelling evidence that greater protection is needed, based on data from some of the longest running research projects on coral reefs, reef fish assemblages, and seagrass beds for the Caribbean. Most of the stresses affecting marine resources throughout the Caribbean (e.g. damage from boats, hurricanes and coral diseases) are also causing deterioration in these MPAs. Living coral cover has decreased and macroalgal cover has increased. Seagrass densities have decreased because of storms and anchor damage. Intensive fishing in the US Virgin Islands has caused loss of spawning aggregations and decreases in mean fish size and abundance. Groupers and snappers are far less abundant and herbivorous fishes comprise a greater proportion of samples than in the 1960s. Effects of intensive fishing are evident even within MPA boundaries. Although only traditional fishing with traps of 'conventional design' is allowed, commercial trap fishing is occurring. Visual samples of fishes inside and outside Virgin Islands National 'Park showed no significant differences in number of species, biomass, or mean size of fishes. Similarly, the number of fishes per trap was statistically similar inside and outside park waters. These MPAs have not been effective because an unprecedented combination of natural and human factors is assaulting the resources, some of the greatest damage is from stresses outside the control of park managers (e.g. hurricanes), and enforcement of the few regulations has been limited. Fully functioning MPAs which prohibit fishing and other extractive uses (e.g. no-take marine reserves) could reverse some of the degradation, allowing replenishment of the fishery resources and recovery of benthic habitats.

Environmental Conservation↗

USGS2024

Re-evaluating Marine Isotope Stage 5a paleo-sea-level trends from across the Florida Keys reef tract

Unraveling how Global Mean Sea Level (GMSL) fluctuated during past warm periods can improve our understanding of linkages between sea-level fluctuations, orbital forcing, and ice-sheet dynamics. Current estimates of GMSL for Marine Isotope Stages (MIS) 5a and 5c — two warm intervals following the relatively well-documented MIS 5e — contain meters of uncertainty and fewer data due to several challenges. These challenges include concealment of datable in-situ coral facies by MIS 1 deposits and inaccessibility due to submergence by modern sea level. We present a comprehensive dataset based on U–Th dating and stratigraphic correlation of 23 cores totaling over 170 m of recovered coral-reef deposits across the tectonically stable Florida Keys Reef Tract (FKRT). Following detailed facies descriptions, 34 in-situ, minimally altered aragonitic coral samples (≤2.7% calcite) below the Holocene-Pleistocene boundary were targeted for U–Th geochronology. Fourteen closed-system coral U–Th ages from MIS 5a include the commonly used sea-level indicator Acropora palmata , but also the massive coral taxa Pseudodiploria strigosa, Siderastrea siderea, Orbicella spp., and Porites astreoides . Dating yielded ages in the range of 88–81 ka (average 2σ uncertainty of less than 200 years). These ages suggest MIS 5a reef initiation at ∼88 ka BP, a peak near 83 ka with minimum elevations between −6.0 ± 0.5 and −5.6 ± 0.5 m MSL (2σ uncertainty and subsidence-corrected), and reef termination and sea-level fall by ∼81 ka BP. Notably, the range of peak MIS 5a relative sea-level estimates of −6.5 to −5.1 m MSL are more than 2 m shallower (higher) than previous estimates of −11 to −9 m. Our higher resolution regional sea-level reconstruction across four subregions of the Florida Keys reef tract aligns with changes in July insolation at 65° N: a trend that most other records, such as deep-sea sediments, do not have the accuracy and precision to resolve. Three massive coral samples from MIS 5c, consisting of Pseudodiploria clivosa , and Orbicella spp., yielded ages in the range of 104 to 99 ka (average 2σ uncertainty less than 200 years); however, because only one sample met the closed-system criteria, our ability to estimate MIS 5c sea level is relatively limited. More empirical estimates of sea-level from the MIS 5a and MIS 5c intervals based on numerical dating of reliable local sea-level constraints are critical for GMSL calculations and relating changes in sea-level amplitude and timing to global ice volume modeling and glacio-isostatic effects, all of which can improve predictions of future sea-level changes in coastal regions.

Florida↗

USGS2009

Net Loss of CaCO3 from a subtropical calcifying community due to seawater acidification: Mesocosm-scale experimental evidence

Acidification of seawater owing to oceanic uptake of atmospheric CO 2 originating from human activities such as burning of fossil fuels and land-use changes has raised serious concerns regarding its adverse effects on corals and calcifying communities. Here we demonstrate a net loss of calcium carbonate (CaCO 3 ) material as a result of decreased calcification and increased carbonate dissolution from replicated subtropical coral reef communities (N=3) incubated in continuous-flow mesocosms subject to future seawater conditions. The calcifying community was dominated by the coral Montipora capitata. Daily average community calcification or Net Ecosystem Calcification (NECC=CaCO 3 production - dissolution) was positive at 3.3 mmol CaCO 3 m -2 h -1 under ambient seawater pCO 2 conditions as opposed to negative at -0.04 mmol CaCO 3 m -2 h -1 under seawater conditions of double the ambient pCO 2 . These experimental results provide support for the conclusion that some net calcifying communities could become subject to net dissolution in response to anthropogenic ocean acidification within this century. Nevertheless, individual corals remained healthy, actively calcified (albeit slower than at present rates), and deposited significant amounts of CaCO 3 under the prevailing experimental seawater conditions of elevated pCO 2 .

Biogeosciences↗

USGS2018

Mechanisms of wave‐driven water level variability on reef‐fringed coastlines

Wave‐driven water level variability (and runup at the shoreline) is a significant cause of coastal flooding induced by storms. Wave runup is challenging to predict, particularly along tropical coral reef‐fringed coastlines due to the steep bathymetric profiles and large bottom roughness generated by reef organisms, which can violate assumptions in conventional models applied to open sandy coastlines. To investigate the mechanisms of wave‐driven water level variability on a reef‐fringed coastline, we performed a set of laboratory flume experiments on an along‐shore uniform bathymetric profile with and without bottom roughness. Wave setup and waves at frequencies lower than the incident sea‐swell forcing (infragravity waves) were found to be the dominant components of runup. These infragravity waves were positively correlated with offshore wave groups, signifying they were generated in the surf zone by the oscillation of the breakpoint. On the reef flat and at the shoreline, the low‐frequency waves formed a standing wave pattern with energy concentrated at the natural frequencies of the reef flat, indicating resonant amplification. Roughness elements used in the flume to mimic large reef bottom roughness reduced low frequency motions on the reef flat and reduced wave run up by 30% on average, compared to the runs over a smooth bed. These results provide insight into sea‐swell and infragravity wave transformation and wave setup dynamics on steep‐sloped coastlines, and the effect that future losses of reef bottom roughness may have on coastal flooding along reef‐fringed coasts.

Journal of Geophysical Research C: Oceans↗

USGS2016

Characterization of available light for seagrass and patch reef productivity in Sugarloaf Key, Lower Florida Keys

Light availability is an important factor driving primary productivity in benthic ecosystems, but in situ and remote sensing measurements of light quality are limited for coral reefs and seagrass beds. We evaluated the productivity responses of a patch reef and a seagrass site in the Lower Florida Keys to ambient light availability and spectral quality. In situ optical properties were characterized utilizing moored and water column bio-optical and hydrographic measurements. Net ecosystem productivity (NEP) was also estimated for these study sites using benthic productivity chambers. Our results show higher spectral light attenuation and absorption, and lower irradiance during low tide in the patch reef, tracking the influx of materials from shallower coastal areas. In contrast, the intrusion of clearer surface Atlantic Ocean water caused lower values of spectral attenuation and absorption, and higher irradiance in the patch reef during high tide. Storms during the studied period, with winds >10 m·s −1 , caused higher spectral attenuation values. A spatial gradient of NEP was observed, from high productivity in the shallow seagrass area, to lower productivity in deeper patch reefs. The highest daytime NEP was observed in the seagrass, with values of almost 0.4 g·O 2 ·m −2 ·h −1 . Productivity at the patch reef area was lower in May than during October 2012 (mean = 0.137 and 0.177 g·O 2 ·m −2 ·h −1 , respectively). Higher photosynthetic active radiation (PAR) levels measured above water and lower light attenuation in the red region of the visible spectrum (~666 to ~699 nm) had a positive correlation with NEP. Our results indicate that changes in light availability and quality by suspended or resuspended particles limit benthic productivity in the Florida Keys.

Florida↗

USGS2011

Patch reefs: Lidar morphometric analysis

Alina Reef is one of several thousand patch reefs that lie across the shallow carbonate platform seaward of Hawk Channel off the northern Florida Keys. The site is near the northern latitudinal fringe of the late Holocene western Atlantic coral reef distribution (Figure 1 ). The area is covered by calcareous sand and discontinuous Thalassia testudinum seagrass meadows and is studded with numerous scattered Holocene patch reefs. Most of the patch reefs are found in water depths of 2–9 m, are subcircular, elliptical, or irregular in plan view, and range up to about 8 m in vertical relief and 700 m in width. Coring has demonstrated thicknesses of 4.5–6 m and has revealed frameworks built by large, massive head corals.

Florida↗

USGS2014

Gross and microscopic pathology of lesions in Pocillopora spp. from the subtropical eastern Pacific

Coral reefs are threatened by a variety of factors including diseases that have caused significant damage in some regions such as in the Caribbean. At present, no data are available on coral diseases in the Mexican Pacific where Pocillopora spp. is a dominant component of coral communities. Here, we describe gross and microscopic morphology of lesions found in pocilloporids at four sites in the Mexican Pacific. Corals were identified and their lesions photographed and quantified in the field. Tissue samples were collected from healthy and affected colonies for histopathology. We recorded seven species of pocilloporids at the study sites with Isla Isabel being the location with the highest coral diversity ( H ′ = 1.27). Lesions were present in 42% of the colonies and included discoloration (32%), predation-induced tissue loss (30%), unexplained tissue loss (3%) and overgrowth by sponges or algae (35%). The most affected species, P . damicornis (50%), was also one of the most common in the region. No species was more prone to a particular lesion, but there was a significant association between location and the presence of lesions. Northern Islas Marietas (61%) and Isla Isabel (41%) had the highest prevalence of lesions, followed by Manzanillo (37%) and Bahías de Huatulco (23%). Histological changes included atrophy of the surface body wall with depletion of zooxanthellae (91%) in corals with discoloration (bleaching). Ablation of tissue from mesoglea (18%) was also observed. Colonies with unexplained tissue loss showed atrophy and thinning of the epidermis (89%), characterized by cuboidal instead of pseudocolumnar cells normally found in healthy pseudocolumnar ciliated epithelium. Bacterial aggregates between the mesoglea and gastrodermis (11%) were very conspicuous in healthy and diseased corals. Lesions produced by fish bites and gastropods were associated with tissue atrophy (40%) and, in some cases, algal overgrowth near the lesion (20%). No infectious agents associated with cell pathology were detected microscopically. Bleaching and overgrowth by algae and sponges, as well as unexplained tissue loss, are common in Pocillopora . These lesions and anatomical changes warrant further study since their incidence is potentially indicative of reef degradation.

Mexican Pacific↗

USGS2019

The circumtropical swarm population of the longspined porcupinefish (Diodon holocanthus Linnaeus)

Evidence is presented that Diodon holocanthus is a circumtropical swarm (not a hybrid swarm because the individuals are not hybrids). Some individuals are so different from one another in both color and morphology that they appear to be different species. Thirty undersea and aquarium photographs from different global localities are provided to demonstrate the variability. The worldwide distribution is achieved by the juvenile that has been found more than 1,000 km offshore as large as 90 mm SL. How can it feed on zooplankton with jaws and dentition designed to crush shelled invertebrates? We believe it draws the prey into the mouth with the same mechanism that it uses to expand its body when threatened; the water with prey is diverted to the pharyngeal cavity, then released from the gill opening on each side. Larger juveniles may seek concentrations of zooplankton for feeding, perhaps collectively. A confirming experiment in an aquarium is advised. Aggregations of pelagic juveniles have been observed at the surface outside barrier reefs and found inshore the following morning, indicating that settlement took place at night to minimize predation. The juveniles soon disperse to inshore habitats of mangrove and sea grass to coral reef. The hybrid Diodon holocanthus x D. hystrix from South Africa is illustrated. The narrative for the present research on D. holocanthus is presented chronologically to show how increasing evidence failed to support the multitude of apparent new species of Diodon , leading to the conclusion of a swarm.

Aqua↗

USGS2009

Science-Based Strategies for Sustaining Coral Ecosystems

Coral ecosystems and their natural capital are at risk. Greenhouse gas emissions, overfishing, and harmful land-use practices are damaging our coral reefs. Overwhelming scientific evidence indicates that the threats are serious, and if they are left unchecked, the ecological and social consequences will be significant and widespread. Although the primary stressors to coral ecosystems are known, science-based strategies are needed to more accurately explain natural processes and forecast human-induced change. Collaborations among managers and scientists and enhanced mapping, monitoring, research, and modeling can lead to effective mitigation plans. U.S. Geological Survey scientists and their partners assess coral ecosystem history, ecology, vulnerability, and resiliency and provide study results to decisionmakers who may devise policies to sustain coral resources and the essential goods and services they provide.

Fact Sheet↗

USGS2019

Immediate effects of hurricanes on a diverse coral/mangrove ecosystem in the U.S. Virgin Islands and the potential for recovery

Hurricanes Irma and Maria, two powerful storms that hit the U.S. Virgin Islands less than 2 weeks apart in September 2017, caused extensive damage to the natural resources on St. John. Damage was particularly severe in a unique mangrove/coral ecosystem in three bays within Virgin Islands Coral Reef National Monument, a National Park Service marine protected area. Many Red Mangrove ( Rhizophora mangle ) trees were uprooted and tossed into the sea, and the prop roots of others were stripped of corals, sponges and other marine life. No other mangrove area in the Caribbean is known to have so many scleractinian corals (about 30 species before the storms). Although many corals were overturned or buried in rubble, colonies of most of the species, including four that are listed as threatened under the U.S. Endangered Species Act, survived. Recovery of this ecosystem will depend on Red Mangrove propagules becoming established and producing prop roots to support rich marine life along with a canopy to provide the shade that was critical to the biodiversity that was present before the storms. Unlike in many situations where major disturbances reduce coral cover, the substrate that must be restored for full recovery to occur is a living substrate—the prop roots of the mangroves. Larvae of corals and sponges will need to recruit on to the roots. Future storms could hinder this process.

Diversity↗

USGS2007

Identifying nutrient sources to three lagoons at Ofu and Olosega, American Samoa using δ15N of benthic macroalgae

Degradation of nearshore habitats is a serious problem in some areas of American Samoa, such as in Pago Pago Harbor on Tutuila Island, and is a smaller but chronic problem in other areas. Sedimentation, pollution, nutrient enrichment from surface runoff or groundwater, and trampling are the major factors causing the changes ( Peshut and Brooks, 2005 ). On the outer islands of Ofu and Olosega (Manu’a Islands; Fig. 1 ), there is an interesting contrast between relatively pristine lagoon habitats not far from comparatively degraded lagoon habitats. To’aga lagoon on the southeast side of Ofu Island ( Fig. 1 ) has clear waters, a high diversity of corals and fishes, no human habitations, and an undeveloped watershed with no streams. To’aga lagoon is within the boundaries of the National Park of American Samoa and is the site of long-term research on coral reef resilience and global climate change. Only 3 km to the east of To’aga is a degraded lagoon that fronts Olosega Village. The Olosega lagoon is similar in size but has significantly less live coral than To’aga, and blooms of filamentous algae have been reported to cover the Olosega lagoon/reef flat bottom (unpublished data, PC; Fig. 2 ). The islands are influenced by the same regional-scale and biogeochemical regimes, and both islands are remnants of a volcanic caldera ( Craig, 2005 ). Thus, local factors operating on the scale of a kilometer or less are thought to be driving the differences observed between lagoons. Land disturbance is limited to a road linking the villages, the clearing of vegetation for buildings, and two village dump sites located on the narrow strip of land between the steep slopes of the islands and the shoreline; there is no industry or associated pollution on either island. Cesspools are used for sewage disposal. Nutrient enrichment (from cesspools) of groundwater and the lagoon, as well as trampling during gleaning of reef organisms, are possible factors affecting the spatial relief and benthic composition of the lagoons. A pristine lagoon site (To’aga) and two that may be influenced by adjacent human populations (Ofu and Olosega Villages) were selected for study.

American Samoa↗

USGS2000

Environmental quality and preservation; bedrock beneath reefs; the importance of geology in understanding biological decline in a modern reef ecosystem

Environmental Quality and Preservation-Bedrock Beneath Reefs: the Importance of Geology in Understanding Biological Decline in a Modern Ecosystem' is a four-page and one-plate full-color discussion of the geologic framework and evolutionary history of the coral reef ecosystem that lines the outer shelf off the Florida Keys.

Open-File Report↗

USGS2022

Unified methods in collecting, preserving, and archiving coral bleaching and restoration specimens to increase sample utility and interdisciplinary collaboration

Coral reefs are declining worldwide primarily because of bleaching and subsequent mortality resulting from thermal stress. Currently, extensive efforts to engage in more holistic research and restoration endeavors have considerably expanded the techniques applied to examine coral samples. Despite such advances, coral bleaching and restoration studies are often conducted within a specific disciplinary focus, where specimens are collected, preserved, and archived in ways that are not always conducive to further downstream analyses by specialists in other disciplines. This approach may prevent the full utilization of unexpended specimens, leading to siloed research, duplicative efforts, unnecessary loss of additional corals to research endeavors, and overall increased costs. A recent US National Science Foundation-sponsored workshop set out to consolidate our collective knowledge across the disciplines of Omics, Physiology, and Microscopy and Imaging regarding the methods used for coral sample collection, preservation, and archiving. Here, we highlight knowledge gaps and propose some simple steps for collecting, preserving, and archiving coral-bleaching specimens that can increase the impact of individual coral bleaching and restoration studies, as well as foster additional analyses and future discoveries through collaboration. Rapid freezing of samples in liquid nitrogen or placing at −80 °C to −20 °C is optimal for most Omics and Physiology studies with a few exceptions; however, freezing samples removes the potential for many Microscopy and Imaging-based analyses due to the alteration of tissue integrity during freezing. For Microscopy and Imaging, samples are best stored in aldehydes. The use of sterile gloves and receptacles during collection supports the downstream analysis of host-associated bacterial and viral communities which are particularly germane to disease and restoration efforts. Across all disciplines, the use of aseptic techniques during collection, preservation, and archiving maximizes the research potential of coral specimens and allows for the greatest number of possible downstream analyses.

PeerJ↗