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Urbanization and host relatedness shape virome composition in a widespread, generalist carnivore

Urban wildlife species have the potential to serve as links in disease transmission between wildlife, humans and domestic animals at the wildland–urban interface (WUI), contributing to both sustained cross-species transmission of pathogens and the emergence of diseases in susceptible populations. However, the relative roles of host and environmental factors in shaping the composition of pathogen communities in urban wildlife is understudied. In this study, we integrated DNA and RNA virome data with host genomic and GPS datasets to investigate factors shaping virome composition in bobcats ( Lynx rufus ) at the WUI in the Tucson Mountains, Arizona, USA. Using a hybrid-capture approach for 31 scats and 17 buccal swabs, we identified multiple viruses that could affect carnivore health at the WUI, including canine parvovirus, feline astrovirus, Felis catus papillomaviruses 2 and 3 and Lyon-IARC polyomavirus. Models of virome composition and distribution of viral taxa indicated contributions of host genetic relatedness and factors relating to urbanisation (such as percentages of urban land cover, road and building densities and distances to roads). Genetic associations with virome compositions were particularly influenced by females. While females exhibit significant isolation by distance, partial Mantel tests revealed a significant correlation between beta diversity and host genetic distance in females only. To our knowledge, this study represents the first assessment of factors shaping virome composition in a wild felid. Our finding of known feline and canine pathogens in bobcats underscores the potential of the WUI to facilitate cross-species transmission between wild and domestic animals.

Arizona

Effects of land use and hydrogeology on the water quality of alluvial aquifers in eastern Iowa and southern Minnesota, 1997

Ground-water samples were collected from monitoring wells at 31 agricultural and 30 urban sites in the Eastern Iowa Basins study unit during June–August 1997 to evaluate the effects of land use and hydrogeology on the water quality of alluvial aquifers. Ground-water samples were analyzed for common ions, nutrients, dissolved organic carbon, tritium, radon-222, pesticides and pesticide metabolites, volatile organic compounds, and environmental isotopes. Calcium, magnesium, and bicarbonate were the dominant ions in most samples and were likely derived from solution of carbonate minerals (calcite and dolomite) present in alluvial detrital deposits. Chloride and nitrate were dominant anions in samples from several wells. Sodium and chloride concentrations were significantly higher in samples from urban areas, where roads are more numerous and road salts may be more frequently applied, than in agricultural areas. Nitrate was detected in 94 percent of samples from agricultural areas and 77 percent of samples from urban areas. Nitrate concentrations were significantly higher in agricultural areas than in urban areas and exceeded the U.S. Environmental Protection Agency maximum ontaminant level for drinking water (10 milligrams per liter as N) in 39 percent of samples from agricultural areas. Nitrate concentrations in samples from urban areas did not exceed the maximum contaminant level. Greater use of fertilizers in agricultural areas most likely contributes to higher nitrate concentrations in samples from those areas. Tritium-based ages indicate ground water was most likely recharged after the 1950’s at all but one sampling site. Agricultural and urban land-use areas have remained relatively stable in the study area since the 1950’s; therefore, the effects of current land use should be reflected in ground water sampled during this study. Radon-222 was detected in all samples and exceeded the U.S. Environmental Protection Agency’s previously proposed maximum contaminant level for drinking water (300 picocuries per liter) in 71 percent of samples. Pesticides were detected in 84 percent of samples from agricultural areas and 70 percent from urban areas. Atrazine and metolachlor were the most frequently detected pesticides in samples from agricultural areas; atrazine and prometon were the most frequently detected pesticides in samples from urban areas. None of the pesticide oncentrations exceeded U.S. Environmental Protection Agency maximum contaminant levels or lifetime health advisories for drinking water. Pesticide metabolites were detected in 94 percent of samples from agricultural areas and 53 percent from urban areas. Metolachlor ethane sulfonic acid and deethylatrazine were the most frequently detected metabolites in samples from agricultural areas; metolachlor ethane sulfonic acid and alachlor ethane sulfonic acid were the most frequently detected metabolites in samples from urban areas. Total metabolite concentrations were significantly higher in samples from agricultural areas than in samples from urban areas. Total pesticide concentrations (parent compounds) tended to be higher in samples from agricultural areas; however, this difference was not statistically significant. Metabolites constituted the major portion of the total residue concentration in the alluvial aquifer. Volatile organic compounds were detected in 40 percent of samples from urban areas and 10 percent from agricultural areas. Methyl tertbutyl ether was the most commonly detected volatile organic compound and was present in 23 percent of samples from urban areas. Elevated concentrations (greater than 30 micrograms per liter) of methyl tert-butyl ether and BTEX compounds (benzene, toluene, ethylbenzene, and xylene) in two samples from urban areas suggest the possible presence of point-source gasoline leaks or spills. Factors other than land use may contribute to observed differences in water quality between and within agricultural and urban areas. Nitrate, atrazine, deethylatrazine, and deisopropylatrazine concentrations were significantly higher in shallow wells with sample intervals nearer the water table and in wells with thinner cumulative clay thickness above the sample intervals. These relations suggest that longer flow paths allow for greater residence time and increase opportunities for sorption, degradation, and dispersion, which may contribute to decreases in nutrient and pesticide concentrations with depth. Nitrogen speciation was influenced by redox conditions. Nitrate concentrations were significantly higher in ground water with dissolved-oxygen concentrations in excess of 0.5 milligram per liter. Ammonia concentrations were higher in ground water with dissolved-oxygen concentrations of 0.5 milligram per liter or less; however, this relation was not statistically significant. The amount of available organic matter may limit denitrification rates. Elevated nitrate concentrations (greater than 2.0 mg/L) were significantly related to lower dissolved organic carbon concentrations in water samples from both agricultural and urban areas. A similar relation between nitrate concentrations (in water) and organic carbon concentrations (in aquifer material) also was observed but was not statistically significant.

Iowa, Minnesota

Chapter B. Physical, Chemical, and Biological Responses of Streams to Increasing Watershed Urbanization in the Piedmont Ecoregion of Georgia and Alabama, 2003

As part of the U.S. Geological Survey National Water-Quality Assessment Program?s effort to assess the physical, chemical, and biological responses of streams to urbanization, 30 wadable streams were sampled near Atlanta, Ga., during 2002?2003. Watersheds were selected to minimize natural factors such as geology, altitude, and climate while representing a range of urban development. A multimetric urban intensity index was calculated using watershed land use, land cover, infrastructure, and socioeconomic variables that are highly correlated with population density. The index was used to select sites along a gradient from low to high urban intensity. Response variables measured include stream hydrology and water temperature, instream habitat, field properties (pH, conductivity, dissolved oxygen, turbidity), nutrients, pesticides, suspended sediment, sulfate, chloride, Escherichia coli (E. coli) concentrations, and characterization of algal, invertebrate and fish communities. In addition, semipermeablemembrane devices (SPMDs)?passive samplers that concentrate hydrophobic organic contaminants such as polycyclicaromatic hydrocarbons (PAHs)?were used to evaluate water-quality conditions during the 4 weeks prior to biological sampling. Changes in physical, chemical, and biological conditions were evaluated using both nonparametric correlation analysis and nonmetric multidimensional scaling (MDS) ordinations and associated comparisons of dataset similarity matrices. Many of the commonly reported effects of watershed urbanization on streams were observed in this study, such as altered hydrology and increases in some chemical constituent levels. Analysis of water-chemistry data showed that specific conductance, chloride, sulfate, and pesticides increased as urbanization increased. Nutrient concentrations were not directly correlated to increases in development, but were inversely correlated to percent forest in the watershed. Analyses of SPMD-derived data showed that bioassays and certain chemical constituents such as pyrene and benzophenanthrene, both PAHs found in coal tar, were strongly correlated with measures of watershed urbanization. Hydrologic variability metrics indicated that as urban development increased, streams became flashier, with characteristic high flows having shorter duration. The hydrologic effects associated with urbanization were greatest during the fall and least apparent during the winter. No correlations were observed between increasing urbanization and stream temperature or changes in stream habitat. Algal, invertebrate, and fish communities exhibited statistically significant changes as watersheds became increasingly urban, with the strongest responses observed in the invertebrate community followed by fishes, then algal diatom communities. Invertebrate communities were the most responsive to increasing urbanization with Ephemeroptera, Plecoptera, and Tricoptera taxa, especially Plecoptera (stoneflies) responding negatively and most strongly to increasing urbanization. Invertebrate communities were influenced more significantly by water quality, although significant responses to altered hydrology also were noted. In terms of the fish community, the percentage of cyprinids present in the stream was the only Index of Biotic Integrity metric that responded negatively to increases in watershed urbanization. Fish community response to urbanization was intermediate relative to algae and invertebrates with respect to significant metric responses as well as the overall community response to increasing urbanization. Measures of hydrologic variability were the most influential environmental variables affecting the algal community. Although sites were originally chosen to represent a gradient of increasing urbanization, a cluster analysis performed on the component metrics of the urban index categorized sites into four distinct groups. Multivariate analysis based on nonmetric MDS and related analyses of data ma

Alabama, Georgia

An assessment of flow data from Klamath River sites between Link River Dam and Keno Dam, south-central Oregon

Records of diversion and return flows for water years 1961?2004 along a reach of the Klamath River between Link River and Keno Dams in south-central Oregon were evaluated to determine the cause of a water-balance inconsistency in the hydrologic data. The data indicated that the reach was losing flow in the 1960s and 1970s and gaining flow in the 1980s and 1990s. The absolute mean annual net water-balance difference in flows between the first and second half of the 44-year period (1961-2004) was approximately 103,000 acre-feet per year (acre-ft/yr). The quality of the diversion and return-flow records used in the water balance was evaluated using U.S. Geological Survey (USGS) criteria for accuracy. With the exception of the USGS Klamath River at Keno record, which was rated as 'good' or 'excellent,' the eight other flow records, all from non-USGS flow-measurement sites, were rated as 'poor' by USGS standards due to insufficient data-collection documentation and a lack of direct discharge measurements to verify the rating curves. The record for the Link River site, the most upstream in the study area, included both river and westside power canal flows. Because of rating curve biases, the river flows might have been overestimated by 25,000 acre-ft/yr on average from water years 1961 to 1982 and underestimated by 7,000 acre-ft/yr on average from water years 1983 to 2004. For water years 1984-2004, westside power canal flows might have been underestimated by 11,000 acre-ft/yr. Some diversion and return flows (for mostly agricultural, industrial, and urban use) along the Klamath River study reach, not measured continuously and not included in the water-balance equation, also were evaluated. However, the sum of these diversion and return flows was insufficient to explain the water-balance inconsistency. The possibility that ground-water levels in lands adjacent to the river rose during water years 1961-2004 and caused an increase in ground-water discharge to the river also was evaluated. However, water-level data from local wells did not have a rising trend during the period. The most likely cause of the water-balance inconsistency was flow measurement error in the eight non-USGS flow records. Part of the water-balance inconsistency can be explained by a 43,000 acre-foot error in the river and canal flow portions of the Link River flow record. A remaining 60,000 acre-foot error might have been distributed among the seven other flow records, or much of the remaining 60,000 acre-foot error might have been in the Link River flow record because flows in that record had a greater magnitude than flows in the seven other records. As an additional analysis of the water-balance issue, flow records used in the water balance were evaluated for trends and compared to known changes in water management in the Bureau of Reclamation Klamath Project and Lower Klamath and Tule Lake National Wildlife Refuges over the 44-year period. Many of the water-management changes were implemented in the early 1980s. For three diversion flow records, 1983-2004 mean annual flows were 16,000, 8,000, and 21,000 acre-ft/yr greater than their 1961-82 mean annual flows. Return flows to the Klamath River at two flow-measurement sites decreased by 31,000 and 27,000 acre-ft/yr for 1983-2004 compared with the 1961-82 period.

Scientific Investigations Report

Associations between urban sprawl and life expectancy in the United States

In recent years, the United States has had a relatively poor performance with respect to life expectancy compared to the other developed nations. Urban sprawl is one of the potential causes of the high rate of mortality in the United States. This study investigated cross-sectional associations between sprawl and life expectancy for metropolitan counties in the United States in 2010. In this study, the measure of life expectancy in 2010 came from a recently released dataset of life expectancies by county. This study modeled average life expectancy with a structural equation model that included five mediators: annual vehicle miles traveled (VMT) per household, average body mass index, crime rate, and air quality index as mediators of sprawl, as well as percentage of smokers as a mediator of socioeconomic status. After controlling for sociodemographic characteristics, this study found that life expectancy was significantly higher in compact counties than in sprawling counties. Compactness affects mortality directly, but the causal mechanism is unclear. For example, it may be that sprawling areas have higher traffic speeds and longer emergency response times, lower quality and less accessible health care facilities, or less availability of healthy foods. Compactness affects mortality indirectly through vehicle miles traveled, which is a contributor to traffic fatalities, and through body mass index, which is a contributor to many chronic diseases. This study identified significant direct and indirect associations between urban sprawl and life expectancy. These findings support further research and practice aimed at identifying and implementing changes to urban planning designed to support health and healthy behaviors.

International Journal of Environmental Research an

High frequency of extra-pair paternity in an urban population of Cooper's Hawks

Raptors exhibit some of the highest rates of intra-pair copulations among birds, perhaps in an attempt by males to reduce the risk of being cuckolded. Indeed, the frequency of extra-pair fertilizations reported in studies of raptors to date is relatively low (0-11.2%). Socially monogamous Cooper's Hawks ( Accipiter cooperii ) exhibit one of the highest copulation rates among birds, yet there are no published accounts of extra-pair copulations (or paternity). We studied a population of Cooper's Hawks in Milwaukee, Wisconsin, during three breeding seasons (2003, 2004, and 2007), examining the possible effects of age (1 yr old vs. ≥ 2 yr old), adult mass, and brood size on the frequency of extra-pair paternity (EPP). We found that 19.3% of nestlings ( N = 27/140) were extra-pair young (EPY), and 34% of all broods ( N = 15/44) had at least one EPY. The sires of the EPY in our study were identified for only two broods, suggesting that floater males may have engaged in extra-pair copulations with territorial females. We found that brood size was a good predictor of the occurrence of EPP (EPP) in nests, but adult mass and female age were not. To our knowledge, these possible correlates of the occurrence of EPP in raptors had not previously been investigated. Male Cooper's Hawks provide food for females during the pre-nesting period, and delivery of food is, in contrast to other raptor species, typically followed by copulation. Thus, one possible explanation of the relatively high rates of EPP in our study is that females might accept or even solicit extra-pair copulations from males other than their mates as a means of maximizing energy intake for egg production. Such behavior might be particularly likely in our study area, i.e., a food-rich urban setting with a high breeding density of Cooper's Hawks.

Wisconsin

Land-use controls on sources and processing of nitrate in small watersheds: Insights from dual isotopic analysis

Studies have repeatedly shown that agricultural and urban areas export considerably more nitrogen to streams than forested counterparts, yet it is difficult to identify and quantify nitrogen sources to streams due to complications associated with terrestrial and in-stream biogeochemical processes. In this study, we used the isotopic composition of nitrate (??15N-NO3- and ??18O- NO3-) in conjunction with a simple numerical model to examine the spatial and temporal variability of nitrate (NO3-) export across a land-use gradient and how agricultural and urban development affects net removal mechanisms. In an effort to isolate the effects of land use, we chose small headwater systems in close proximity to each other, limiting the variation in geology, surficial materials, and climate between sites. The ??15N and ??18Oof stream NO 3- varied significantly between urban, agricultural, and forested watersheds, indicating that nitrogen sources are the primary determinant of the ??15N-NO3-, while the ??18O-NO3- was found to reflect biogeochemical processes. The greatest NO3- concentrations corresponded with the highest stream ??15N-NO3- values due to the enriched nature of two dominant anthropogenic sources, septic and manure, within the urban and agricultural watersheds, respectively. On average, net removal of the available NO3- pool within urban and agricultural catchments was estimated at 45%. The variation in the estimated net removal of NO3- from developed watersheds was related to both drainage area and the availability of organic carbon. The determination of differentiated isotopic land-use signatures and dominant seasonal mechanisms illustrates the usefulness of this approach in examining the sources and processing of excess nitrogen within headwater catchments. ?? 2010 by the Ecological Society of America.

Ecological Applications

Survival and cause-specific mortality of translocated female mule deer in southern New Mexico, USA

Context: Many mule deer ( Odocoileus hemionus ) populations in New Mexico have failed to recover from previous population declines, while some populations near urban areas have increased, resulting in more frequent human–wildlife conflicts. Translocations were used in an effort to simultaneously reduce an urban mule deer population and augment two low-density populations in south-western New Mexico, USA. Aims: Because of insufficient monitoring, the efficacy of many ungulate translocations is unknown. Our goal was to monitor cause-specific mortality and 1 year post-release survival of mule deer translocated during 2013 and 2014. We compared survival rates of mule deer released with a hard- versus soft-release during the 2014 translocation. Methods: . We translocated 218 mule deer in 2013 and 2014 into the Peloncillo Mountains (PM) and San Francisco River Valley (SFRV); 106 adult female mule deer were fitted with telemetry collars to determine cause-specific mortality and estimate survival 1 year post-release. All deer were hard-released in 2013. In 2014, translocated mule deer were either held in a soft-release pen (0.81 ha) for approximately 3 weeks or hard-released into their new environment. We used a Kaplan–Meier approach to estimate survival of translocated mule deer at each release area and to compare survival of mule deer translocated using each release method (i.e. hard- versus soft-release). Key results: In 2013–14, survival of hard-released deer in the PM was 0.627 (s.e. = 0.09), compared with 0.327 (s.e. = 0.10) in the SFRV. In 2014–15, survival of hard–released deer in the PM was 0.727 (s.e. = 0.13) and survival of soft-released deer was 0.786 (s.e. = 0.11). In the SFRV, survival of hard- and soft-released deer was 0.656 (s.e. = 0.14) and 0.50 (s.e. = 0.16), respectively. Causes of mortality were predation (51%), potential disease (9%; blue tongue or epizootic haemorrhagic disease), accident (5%), poaching (5%) and unknown (20%). Conclusions: Translocations can be an effective management tool to augment populations of mule deer while reducing overabundant urban populations. Soft-released mule deer did not have higher survival than hard-released mule deer, although the length and conditions of the acclimation period were limited in our study. Implications: Overabundant mule deer populations in urban areas may serve as sources of animals to bolster declining populations. Soft-release pens of smaller size and short period of acclimation did not influence survival.

New Mexico

The effect of urban growth on landscape-scale restoration for a fire-dependent songbird

A landscape-scale perspective on restoration ecology has been advocated, but few studies have informed restoration with landscape metrics or addressed broad-scale threats. Threats such as urban growth may affect restoration effectiveness in a landscape context. Here, we studied longleaf pine savanna in the rapidly urbanizing southeastern United States where a habitat-specialist bird, Bachman's sparrow ( Peucaea aestivalis ), is closely associated with savanna vegetation structure and frequent fire. Our objectives were to construct a species distribution model for Bachman's sparrow, determine the relationship between fire and urbanization, quantify the urban growth effect (2010–2090), identify potential restoration areas, and determine the interaction between restoration potential and urban growth by 2050. Number of patches, patch size, and isolation metrics were used to evaluate scenarios. The species distribution model was 88% accurate and emphasized multiscale canopy cover characteristics, fire, and percent habitat. Fires were less common <600 m from urban areas, and this fire suppression effect exacerbated urban growth effects. For restoration scenarios, canopy cover reduction by 30% resulted in nearly double the amount of habitat compared to the prescribed fire scenario; canopy cover reduction resulted in larger patch sizes and less patch isolation compared to current conditions. The effect of urban growth on restoration scenarios was unequal. Seventy-four percent of restoration areas from the prescribed fire scenario overlapped with projected urban growth, whereas the canopy cover reduction scenario only overlapped by 9%. We emphasize the benefits of simultaneously considering the effects of urban growth and landscape-scale restoration potential to promote a landscape with greater patch sizes and less isolation.

North Carolina

Nutrient and biological conditions of selected small streams in the Edwards Plateau, central Texas, 2005-06, and implications for development of nutrient criteria

During the summers of 2005 and 2006 the U.S. Geological Survey, in cooperation with the Texas Commission on Environmental Quality, evaluated nutrient and biological conditions in small streams in parts of the Edwards Plateau of Central Texas. Land-cover analysis was used to select 15 small streams that represented a gradient of conditions with the potential to affect nutrient concentrations across the study area, which comprises two of four subregions of the Edwards Plateau ecoregion. All 15 streams were sampled for water properties, nutrients, algae, benthic invertebrates, and fish in summer 2005, and eight streams were resampled in summer 2006. Streams that did not receive wastewater effluent had relatively low nutrient concentrations and were classified as oligotrophic; streams receiving wastewater effluent had relatively high nutrient concentrations and were classified as eutrophic. Nutrient concentrations measured in the least-disturbed streams closely matched the U.S. Environmental Protection Agency nutrient criteria recommendations based on estimated reference concentrations. Nitrogen/phosphorus ratios indicated streams not affected by wastewater effluent might be limited by phosphorus concentrations. Algal indicators of nutrient condition were closely related to dissolved nitrogen concentrations and streamflow conditions. Ambient dissolved nitrogen concentrations (nitrite plus nitrate) were positively correlated with benthic algal chlorophyll-a concentrations. The correlation of benthic algal chlorophyll-a with instantaneous nitrite plus nitrate load was stronger than correlations with ambient nutrients. Increased nutrient concentrations were associated with increased macroalgae cover, wider diel dissolved oxygen ranges, and reduced diel dissolved oxygen minimums. Benthic invertebrate aquatic life use scores generally were classified as High to Exceptional in study streams despite the influence of urbanization or wastewater effluent. Reductions in aquatic life use scores appeared to be related to extremely low flow conditions and the loss of riffle habitats. Benthic invertebrate aquatic life use scores and several of the metrics used to compute composite aquatic life use scores tended to increase with increasing total nitrogen concentrations. Fish community aquatic life use scores generally were classified as High or Exceptional with the exception of a few samples collected from streams receiving wastewater effluent that were classified as Intermediate. Fish community aquatic life use scores and several fish community metrics were positively correlated with nutrient concentrations and macroalgae cover. The majority of the positive correlations among nutrient concentrations, macroalgae cover, and fish metrics were strongly influenced by relatively high nutrient concentrations. Both benthic and planktonic chlorophyll-a measures were related to nutrients, but this study indicates that benthic chlorophyll-a was the better choice for monitoring nutrient enrichment because (1) the relation between benthic chlorophyll-a and nutrients was stronger, and (2) a strong relation between benthic chlorophyll-a and nutrients persisted after removal of the sites influenced by wastewater effluent, which indicates superior ability of benthic chlorophyll-a to discriminate between conditions at lower nutrient concentrations. The transect-based algal abundance estimate technique is a useful tool for identifying eutrophic conditions, assessing nuisance algal growth, and making broad comparisons among sites, but it appears to lack the fine resolution to identify lesser degrees of nutrient enrichment. Several individual benthic invertebrate and fish metrics were correlated with nutrient conditions, but correlations were generally positive and the reverse of what would be expected when nutrient enrichment causes a proliferation of algal growth and stream degradation. However, the benthic invertebrate functional feeding group metrics showed some

Scientific Investigations Report

Occurrence and distribution of pesticides in streams of the Eastern Iowa Basins, 1996-98

The U.S. Geological Survey began collection of water samples in streams of the Eastern Iowa Basins in 1996 for the analysis of pesticides and pesticide degradates as part of the National Water Quality Assessment Program (NAWQA). This study provides some of the first large scale monitoring data on pesticides and pesticide degradates in Eastern Iowa. Three hundred and forty-four samples were collected from 1996-98 to document the occurrence, distribution, and transport of pesticide compounds. Pesticide analysis included 80 pesticide compounds and 10 pesticide degradates. The Eastern Iowa Basins study encompasses about 50,500 square kilometers (19,500 square miles) and is drained by four major rivers--the Wapsipinicon, Cedar, Iowa, and Skunk. Agriculture accounts for approximately 93 percent of the land use in the study area. The most commonly detected pesticides were those most heavily used on crops. The triazine (atrazine and cyanazine) and chloroacetanilide (alachlor, acetochlor, and metolachlor) pesticides are some of the most heavily used (by weight) historically and during the period of data collection 1996-98. Atrazine and metolachlor were detected in all samples. Acetochlor, alachlor, and cyanazine were detected in more than 70 percent of all surface-water samples. Few non-agricultural herbicides were detected. One exception, prometon was detected in more than 80 percent of the samples at very low concentrations (less than 0.1 micrograms per liter). Pesticide degradates were some of the most frequently detected pesticide compounds in the study. Four pesticide degradates--metolachlor ethane sulfonic acid (metolachlor ESA), alachlor ethane sulfonic acid (alachlor ESA), metolachlor oxanilic acid (metolachlor OA), and acetochlor ethane sulfonic acid (acetochlor ESA) were detected in more than 75 percent of the samples. A few insecticides that may pose potential risk to aquatic invertebrates were detected in streams from May through September, the months when most application normally occurs. Carbofuran was the most commonly detected insecticide (16 percent of all samples). Although detected in less than 20 percent of all samples, carbofuran was detected in 68 percent of the samples in June. When present, carbofuran concentrations were generally less than 0.80 micrograms per liter. Chloropyrifos was detected in about seven percent of the samples. As with other insecticides, chlorpyrifos was detected most frequently in June (30 percent). The highest concentration was 0.06 micrograms per liter. Diazinon, a common urban insecticide found in other NAWQA studies throughout the Nation, was detected in only 2 percent of the samples in the Eastern Iowa Basins study. Pesticides were found to occur in mixtures with several compounds rather than individually. Four or more parent pesticide compounds were detected in 91 percent of the water samples and seven or more parent compounds were detected in 46 percent of the water samples. Four or more pesticide degradates were detected in 93 percent of the water samples and seven or more pesticide degradates were detected in 46 percent of the water samples. Commonly applied parent pesticide compounds (acetochlor, alachlor, atrazine, cyanazine, and metolachlor) were generally detected at low concentrations with median concentrations ranging from 0.01 to 0.22 micrograms per liter. The median concentrations for the pesticide degradates were larger than their parent compounds. Median concentrations for the pesticide degradates ranged from 0.07 to 3.7 micrograms per liter. Acetochlor, alachlor, atrazine, cyanazine and metolachlor pesticides compounds were present at least an order of magnitude or higher in the late spring and summer than at other times of the year. The maximum measured concentrations for acetochlor, atrazine, cyanazine and metolachor were approximately 11 to 48 micrograms per liter (the maximum for alachlor was 0.56 micrograms per liter). In contrast, maximum measured concentrations for the total pesticide degradates were lower than their parent compounds and ranged from approximately 0.7 to 12 micrograms per liter. The maximum measured concentration of a single pesticide compound was for atrazine at 48 micrograms per liter. Seasonal patterns of atrazine, acetochlor, alachlor, cyanazine, and metolachlor generally show peak concentrations following application in May and June and decreasing during remainder of the growing season. In addition, a small secondary peak in atrazine, acetochlor, alachlor, cyanazine, and metolachlor concentrations occurred at all sites in late winter. This secondary peak may be attributed to early "winter thaw" that can release pesticide residue from soil, making pesticides available to be transported to surface water by snowmelt and early spring rains. Pesticide degradates account for a significant portion of the total pesticide load at all sites. Eighty-one percent of the total pesticide load in samples from Iowa River near Rowan, Wolf Creek near Dysart, and the Iowa River at Wapello were as pesticide degradates. The pesticide degradates for the triazine compounds tended to follow the load pattern of the parent pesticide compounds closely throughout the year. In general, the degradate loads calculated for the triazine compounds were smaller than loads calculated for their parent pesticides. The loads for the chloroacetanilide degradate compounds were larger than those for the parent pesticides. The loads for alachlor were found to be small or nonexistent. Alachlor has been heavily used in the past, but since 1995 has been largely replaced by acetochlor or other herbicides. The loads for all degradates were higher than the parent compounds during the winter months. Overland flow may be diminished during the winter months, but shallow sub-soil drainage and ground-water flow may be a source of many pesticide degradates during the late fall and winter. Occurrence of pesticide compounds varied by landform region. The triazine herbicides, atrazine and cyanazine and their degradates were present in significantly greater concentrations in the Southern Iowa Drift Plain (predominantly loess soils) than either the Des Moines Lobe or the Iowan Surface (predominantly till soils). Less atrazine and cyanazine are applied to till soils because of pH and organic carbon content. Alachlor, metolachlor, and acetochlor have often been used to offset triazine pesticide reductions in area with till soils.

Iowa

The southern megalopolis: using the past to predict the future of urban sprawl in the Southeast U.S.

The future health of ecosystems is arguably as dependent on urban sprawl as it is on human-caused climatic warming. Urban sprawl strongly impacts the urban ecosystems it creates and the natural and agro-ecosystems that it displaces and fragments. Here, we project urban sprawl changes for the next 50 years for the fast-growing Southeast U.S. Previous studies have focused on modeling population density, but the urban extent is arguably as important as population density per se in terms of its ecological and conservation impacts. We develop simulations using the SLEUTH urban growth model that complement population-driven models but focus on spatial pattern and extent. To better capture the reach of low-density suburban development, we extend the capabilities of SLEUTH by incorporating street-network information. Our simulations point to a future in which the extent of urbanization in the Southeast is projected to increase by 101% to 192%. Our results highlight areas where ecosystem fragmentation is likely, and serve as a benchmark to explore the challenging tradeoffs between ecosystem health, economic growth and cultural desires.

PLoS ONE

Evaluation of osprey habitat suitability and interaction with contaminant exposure

Ospreys (Pandion haliaetus) have been the focus of conservation efforts since their dramatic population decline attributed to dichlorodiphenyltrichloroethane and related chemicals in the 1960s. Several recent studies of ospreys nesting in the United States have indicated improved reproduction. However, the density of breeding ospreys varies greatly among locations, with some areas seemingly habitable but not occupied. Because of concerns about pollution in the highly industrialized portions of the Delaware River and Bay, USA, we evaluated contaminant exposure and productivity in ospreys nesting on the Delaware River and Bay in 2002. We characterized habitat in the coastal zone of Delaware, USA, and the area around the river in Pennsylvania, USA, using data we collected as well as extant information provided by state and federal sources. We characterized habitat based on locations of occupied osprey nests in Delaware and Pennsylvania. We evaluated water clarity, water depth, land use and land cover, nest availability, and contaminants in sediment for use in a nest-occupancy model. Our results demonstrated that the presence of occupied nests was associated with water depth, water clarity, distance to an occupied osprey nest, and presence of urban land use, whereas a companion study demonstrated that hatching success was associated with the principal components derived from organochlorine-contaminant concentrations in osprey eggs (total polychlorinated biphenyls, p,p'-dichlorodiphenylethylene, chlordane and metabolites, and heptachlor epoxide). Our study provides guidelines for resource managers and local conservation organizations in management of ospreys and in development of habitat models that are appropriate for other piscivorous and marsh-nesting birds.

Journal of Wildlife Management

Spatial and temporal variation in dissolved organic matter in urban streams in metropolitan Boston, Massachusetts (USA)

Urban riverine systems are heterogeneous, and the substantial variability in impervious cover, riparian cover, wetlands, and wastewater and stormwater infrastructure affect sources and transport of dissolved organic matter (DOM), of which dissolved organic C (DOC) is a substantial component. An understanding of the quantity, bioavailability, and timing of DOM inputs (a key energy source for food webs and a component of nutrient cycling) to streams within cities can help to better evaluate drivers of DOM variability. We sampled 100 stream sites in the greater Boston (Massachusetts, USA) area spanning a range of land cover, riparian vegetation, stream size, housing and infrastructure age, and sociodemographic characteristics. Water samples collected during 4 seasonal synoptic events in 2021 and 2022 were analyzed for DOC concentration and DOM characteristics (using fluorescence excitation–emission matrices and absorbance spectra). Temporally, we observed more-autochthonous DOM and lower DOC concentrations in the summer, possibly due to low precipitation and streamflow disconnecting streams from humic wetland and soil C sources. Consistent with other studies, we observed that more-urbanized streams had DOM that was less humic and more autotrophic. Higher wetland cover was associated with more-humic, higher-molecular-weight DOM and was the strongest predictor of DOM characteristics, suggesting that managers should consider the impacts of development on DOM, stream ecological functions, and CO 2 emissions. Interestingly, except during the very dry summer, sites downstream of combined sewer outfalls showed distinctly higher concentrations of protein-like DOM, suggesting the influence of sewage overflows and highlighting the potential for monitoring wastewater contamination using protein-like DOM. Although sociodemographic variables were not strong predictors of DOM composition, we observed a possible association between lower-income areas with less canopy cover and more-autochthonous DOM and between areas with older housing, more canopy cover, and more-humic DOM. These patterns suggest that equitable repair of wastewater infrastructure and restoration of riparian vegetation is needed.

Massachusetts

Assessing the link between coastal urbanization and the quality of nekton habitat in mangrove tidal tributaries

To assess the potential influence of coastal development on habitat quality for estuarine nekton, we characterized body condition and reproduction for common nekton from tidal tributaries classified as undeveloped, industrial, urban or man-made (i.e., mosquito-control ditches). We then evaluated these metrics of nekton performance, along with several abundance-based metrics and community structure from a companion paper (Krebs et al. 2013) to determine which metrics best reflected variation in land-use and in-stream habitat among tributaries. Body condition was not significantly different among undeveloped, industrial, and man-made tidal tributaries for six of nine taxa; however, three of those taxa were in significantly better condition in urban compared to undeveloped tributaries. Palaemonetes shrimp were the only taxon in significantly poorer condition in urban tributaries. For Poecilia latipinna, there was no difference in body condition (length–weight) between undeveloped and urban tributaries, but energetic condition was significantly better in urban tributaries. Reproductive output was reduced for both P. latipinna (i.e., fecundity) and grass shrimp (i.e., very low densities, few ovigerous females) in urban tributaries; however a tradeoff between fecundity and offspring size confounded meaningful interpretation of reproduction among land-use classes for P. latipinna. Reproductive allotment by P. latipinna did not differ significantly among land-use classes. Canonical correspondence analysis differentiated urban and non-urban tributaries based on greater impervious surface, less natural mangrove shoreline, higher frequency of hypoxia and lower, more variable salinities in urban tributaries. These characteristics explained 36 % of the variation in nekton performance, including high densities of poeciliid fishes, greater energetic condition of sailfin mollies, and low densities of several common nekton and economically important taxa from urban tributaries. While variation among tributaries in our study can be largely explained by impervious surface beyond the shorelines of the tributary, variation in nekton metrics among non-urban tributaries was better explained by habitat factors within the tributary and along the shorelines. Our results support the paradigm that urban development in coastal areas has the potential to alter habitat quality in small tidal tributaries as reflected by variation in nekton performance among tributaries from representative land-use classes.

Florida

Water-quality variability and constituent transport and processes in streams of Johnson County, Kansas, using continuous monitoring and regression models, 2003-11

The population of Johnson County, Kansas increased by about 24 percent between 2000 and 2012, making it one of the most rapidly developing areas of Kansas. The U.S. Geological Survey, in cooperation with the Johnson County Stormwater Management Program, began a comprehensive study of Johnson County streams in 2002 to evaluate and monitor changes in stream quality. The purpose of this report is to describe water-quality variability and constituent transport for streams representing the five largest watersheds in Johnson County, Kansas during 2003 through 2011. The watersheds ranged in urban development from 98.3 percent urban (Indian Creek) to 16.7 percent urban (Kill Creek). Water-quality conditions are quantified among the watersheds of similar size (50.1 square miles to 65.7 square miles) using continuous, in-stream measurements, and using regression models developed from continuous and discrete data. These data are used to quantify variability in concentrations and loads during changing streamflow and seasonal conditions, describe differences among sites, and assess water quality relative to water-quality standards and stream management goals. Water quality varied relative to streamflow conditions, urbanization in the upstream watershed, and contributions from wastewater treatment facilities and storm runoff. Generally, as percent impervious surface (a measure of urbanization) increased, streamflow yield increased. Water temperature of Indian Creek, the most urban site which is also downstream from wastewater facility discharges, was higher than the other sites about 50 percent of the time, particularly during winter months. Dissolved oxygen concentrations were less than the Kansas Department of Health and Environment minimum criterion of 5 milligrams per liter about 15 percent of the time at the Indian Creek site. Dissolved oxygen concentrations were less than the criterion about 10 percent of the time at the rural Blue River and Kill Creek sites, and less than 5 percent of the time at the other sites. Low dissolved oxygen at all sites generally coincided with lowest streamflow and warmer water temperatures. Hourly dissolved oxygen concentrations less than 5 milligrams per liter were measured at all sites every year, indicating that even under normal climate conditions in non-urban watersheds such as Kill Creek, dissolved oxygen concentrations may not meet State aquatic-life criterion. Specific conductance was nearly always highest in Indian and Mill Creeks, which were the most urban streams with the largest upstream discharges from wastewater treatment facilities. The largest chloride concentrations and variability were recorded at urban sites and during winter. Each winter during the study period, chloride concentrations in the most urban site, Indian Creek, exceeded the U.S. Environmental Protection Agency-recommended criterion of 230 milligrams per liter for at least 10 consecutive days. The U.S. Environmental Protection Agency-recommended ecoregion criterion for turbidity was exceeded 30 (Indian Creek) to 50 (Blue River) percent of the time. The highest average annual streamflow-weighted suspendedsediment concentration during the study period was in Mill Creek, which has undergone rapid development that likely contributed to higher sediment concentrations. One of the largest suspended-sediment load events in Indian Creek was recorded in early May 2007 when about 25 percent of the total annual sediment load was transported during a period of about 2.25 days. A simultaneous load event was recorded in Kill Creek, when about 75 percent of the total annual sediment load was transported. Sediment yields generally increased as percent impervious surface increased. Computed hourly total nitrogen and total phosphorus concentrations and yields and streamflow-weighted concentrations generally were largest in Indian and Mill Creeks. Annual percent contribution of total nitrogen in the Blue River from wastewater treatment facility discharges ranged from 19 percent in 2010 to 60 percent in 2006. Annual percent contribution of total nitrogen in Indian Creek from wastewater treatment facility discharges ranged from 35 percent in 2010 to 93 percent in 2006. The largest percent nutrient contributions from wastewater discharges coincided with the smallest annual precipitation and streamflow volume, resulting in less contribution originating from runoff. Fecal indicator bacteria Escherichia coli density at the urban Indian Creek site was usually the largest of the five monitoring sites, with an annual median density that consistently exceeded the State primary contact criterion value but was less than the secondary contact criterion. Less than 1 percent of the total annual bacteria load in the Blue River and Indian Creek originated from wastewater discharges, except during 2006 when about 6 percent of the Indian Creek load originated from wastewater. Continuous water-quality monitoring provides a foundation for comprehensive evaluation and understanding of variability and loading characteristics in streams in Johnson County. Because several directly measured parameters are strongly correlated with particular constituents of interest, regression models provide a valuable tool for evaluating variability and loading on the basis of computed continuous data. Continuous data are particularly useful for characterizing nonpoint-source contributions from stormwater runoff. Transmission of continuous data in real-time makes it possible to rapidly detect and respond to potential environmental concerns. As monitoring technologies continue to improve, so does the ability to monitor additional constituents of interest, with smaller measurement error, and at lower operational cost. Continuous water-quality data including model information and computed concentrations and loads during the study period are available at http://nrtwq.usgs.gov/ks/ .

Kansas

Abundance fluctuations among benthic invertebrates in two pacific estuaries

Long-term studies were used to examine (1) contrasting time scales and mechanisms of structural variations within two benthic communities and (2) the usefulness of long data sets for evaluating human impact. A 10-year study of a San Francisco Bay mudflat, the details of which are reported elsewhere, has revealed large short-term (on the order of months) variations in species abundances within a community composed predominantly of opportunistic species. The study site, located in a highly urbanized estuary, is subject to the influence of a nearby sewage-treatment facility. However, rapid changes in population size of the common species, in part due to periodic natural habitat disturbance, impedes the detection of anthropogenic influences on community composition. Only a very long-term data set may provide evidence of progressive change. Data collected for a 20-year period on the benthic community at 200 m depth in the main basin of Puget Sound, an environment subject to little apparent habitat disturbance show that numerical abundance of the common species can also change markedly. Here, however, numerical dominance shifts from one species to another at irregular, multiyear intervals. Recent increases in two heretofore rare species, and a significant increase in total numbers of individuals suggest that long-term changes may be occurring in this community. These two long-term data sets demonstrate the importance of measuring both the amplitude and the periodicity of fluctuations in population size of aquatic species as well as long-term fluctuations and patterns in environmental factors before attempting to demonstrate the effect of anthropogenic influences on aquatic communities. The results of these studies also demonstrate the usefulness of long-term data sets for revealing the potential importance of interactions among species in determining abundance patterns in the soft-bottom benthos.

Estuaries

Hydroclimatic and land-use factors affecting peak streamflow in Illinois, Iowa, Michigan, Minnesota, Missouri, Montana, North Dakota, South Dakota, and Wisconsin

Flood-frequency analysis provides the basis for flood risk estimates used by water-resource managers in land-use planning, and it informs the design of essential infrastructure such as bridges and culverts. Federal guidelines for flood-frequency analysis do not offer guidance on addressing changing climate and land-use conditions when estimating floods. However, failing to consider climatic and land-use changes that cause abrupt or gradual changes in flood regimes can result in a poor representation of the true flood risk. In response to concerns about changing flood regimes, the U.S. Geological Survey, in cooperation with nine State agencies (Illinois Department of Transportation, Iowa Department of Transportation, Michigan Department of Transportation, Minnesota Department of Transportation, Missouri Department of Transportation, Montana Department of Natural Resources and Conservation, North Dakota Department of Water Resources, South Dakota Department of Transportation, and Wisconsin Department of Transportation) began a study to examine variability and change in hydrology and climate and the effects of urbanization and tile drainage on flooding. The analyses of patterns and changes in hydrology and climate were reported in a multichapter Scientific Investigations Report, the findings of which are summarized in this U.S. Geological Survey Circular. Additional analyses documenting changes in seasonality of flooding and the effects of urbanization and tile drainage were completed and published as separate studies and are also summarized in this Circular. These studies provide extensive exploratory analysis of peak streamflow, daily streamflow, and climate data, setting the stage for advancements in flood-frequency analysis.

Illinois, Iowa, Michigan, Minnesota, Missouri, Mon