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Thiamine Deficiency Complex Workshop final report: November 6-7, 2008, Ann Arbor, MI

Fry mortality which was first observed in the late 1960s in Great Lakes salmonines and in Baltic Sea salmon in 1974 has now been linked to thiamine deficiency (historically referred to as Early Mortality Syndrome, or EMS and M74, respectively). Over the past 14 years significant strides have been made in our understanding of this perplexing problem. It is now known that thiamine deficiency causes embryonic mortality in these salmonids. Both overt mortality and secondary effects of thiamine deficiency are observed in juvenile and adult animals. Collectively the morbidity and mortality (fry and adult mortality, secondary metabolic and behavior affects in juveniles and adult fish) are referred to as Thiamine Deficiency Complex (TDC). A workshop was held in Ann Arbor, MI on 6-7 November 2008 that brought together 38 federal, state, provincial, tribal and university scientists to share information, present data and discuss the latest observations on thiamine status of aquatic animals with thiamine deficiency and the causative agent, thiaminase. Twenty presentations (13 oral and 7 posters) detailed current knowledge. In Lake Huron, low alewife Alosa pseudoharengus abundance has persisted and egg thiamine concentrations in salmonines continue to increase, along with evidence of natural reproduction in lake trout Salvelinus namaycush. Lake Michigan Chinook salmon Oncorhynchus tshawytscha appear to have a lower thiamine requirement than other salmonids in the lake. Lake Ontario American eel Anguilla rostrata foraging on alewife have approximately one third the muscle thiamine compared to eels not feeding on alewife, suggesting that eels may be suffering from thiamine deficiency. Secondary effects of low thiamine exist in Great Lakes salmonines and should not be ignored. Thiaminase activity in dreissenid mussels is extremely high but a connection to TDC has not been made. Thiaminase in net plankton was found more consistently in lakes Michigan and Ontario than other lakes evaluated. The biological role of thiaminase I, associated with thiamine deficiency, remains to be determined whereas thiaminase II has been reported to be part of a salvage pathway leading to thiamine synthesis. The use of gene array technology and 3-dimensional histology is adding new understanding to the affects of thiamine deficiency. Research is needed to determine the thiamine status of species feeding on dreissenids, the environmental sources of thiaminase and the biological role of thiaminase I.

Research Status Report

Magnitude and frequency of Iowa floods, part one

Iowa stream-gaging station records at 147 regular gaging stations and partial-record sites were analyzed to produce flood magnitude and frequency relations. An index flood which is the mean annual flood and two composite frequency curves are used to predict the flood-frequency curve for interior streams of the State. The index flood was determined by a multiple correlation. The independent variables found to be significant are size of drainage basin, stream slope, and the normal annual precipitation for the 1931–60 period. The regression equations for two areas were determined—a large central area and a combination of areas in the northeastern and southwestern parts of the State. All three independent variables were used in the central area. Only area and slope were found necessary in the remainder of the State. The ratio to the index flood at selected recurrence intervals was determined from each of the gaging-station flood-frequency curves. The median of the ratios for the long term period (1916–65) is used to define the two composite curves. Maximum flood discharges at gaging stations and miscellaneous sites are tabulated and related to their frequency of occurrence. Together with the analysis previously described they form part one of a two part report. Basic data in the form of flood peak stages and discharges for each year of record at each gaging station are published in part two of the report.

Iowa

Assessment of regional earthquake hazards and risk along the Wasatch Front, Utah; Volume IV

Translation and transfer of complex scientific and engineering studies to nontechnical users are necessary for their use in reducing earthquake hazards in Utah. Three elements are needed for effective translation: likelihood of occurrence, location, and severity of potential hazards. Several examples of translated information for Utah are described and illustrated. Three elements are needed for effective transfer to nontechnical users: delivery, assistance, and encouragement. Numerous examples of transfer techniques in Utah are described and illustrated. The importance of evaluating and revising earthquake-hazard reduction programs and their components is emphasized. Over thirty evaluations of various natural-hazard reduction programs and techniques are introduced. This report was prepared for research managers, funding sources, and evaluators of the Utah earthquake-hazard reduction program who are concerned about effectiveness. It provides an overview of the Utah program for those researchers, engineers, planners, and decisionmakers --public and private -- who are committed to reducing human casualties, property damage, and interruptions of socioeconomic systems.

Utah

Knowledge gaps and opportunities for understanding water-quality processes affecting water availability for beneficial uses

This report describes scientific gaps that limit our ability to predict water-quality effects on water availability for beneficial uses across the United States. Water-quality constituents considered in the report include salinity, geogenic constituents, contaminants of emerging concern, and nitrogen. For each constituent, there is a selection of scientific gaps, approaches, and outcomes to help guide portions of the U.S. Geological Survey Water Mission Area ( https://www.usgs.gov/mission-areas/water-resources ) research portfolio and other national research efforts. Although the report is not comprehensive, and new issues are likely to emerge, it does provide an assessment of many of the major challenges and opportunities concerning water-quality effects on water availability for beneficial uses. Due to the changing nature of water-quality concerns, and to deal with issues not described in this report, it will be important to maintain broad-based expertise and flexibility to address the full spectrum of long-term water-quality issues facing the Nation’s water resources.

Open-File Report

Groundwater quality and simulation of sources of water to wells in the Marsh Creek valley at the U.S. Geological Survey Northern Appalachian Research Laboratory, Tioga County, Pennsylvania

This report provides a November 2010 snapshot of groundwater quality and an analysis of the sources of water to wells at the U.S. Geological Survey (USGS) Northern Appalachian Research Laboratory (NARL) near Wellsboro, Pennsylvania. The laboratory, which conducts fisheries research, currently (2011) withdraws 1,000 gallons per minute of high-quality groundwater from three wells completed in the glacial sand and gravel aquifer beneath the Marsh Creek valley; a fourth well that taps the same aquifer provides the potable supply for the facility. The study was conducted to document the source areas and quality of the water supply for this Department of Interior facility, which is surrounded by the ongoing development of natural gas from the Marcellus Shale. Groundwater samples were collected from the four wells used by the NARL and from two nearby domestic-supply wells. The domestic-supply wells withdraw groundwater from bedrock of the Catskill Formation. Samples were analyzed for major ions, nutrients, trace metals, radiochemicals, dissolved gases, and stable isotopes of oxygen and hydrogen in water and carbon in dissolved carbonate to document groundwater quality. Organic constituents (other than hydrocarbon gases) associated with hydraulic fracturing and other human activities were not analyzed as part of this assessment. Results show low concentrations of all constituents. Only radon, which ranged from 980 to 1,310 picocuries per liter, was somewhat elevated. These findings are consistent with the pristine nature of the aquifer in the Marsh Creek valley, which is the reason the laboratory was sited at this location. The sources of water and areas contributing recharge to wells were identified by the use of a previously documented MODFLOW groundwater-flow model for the following conditions: (1) withdrawals of 1,000 to 3,000 gallons per minute from the NARL wells, (2) average or dry hydrologic conditions, and (3) withdrawals of 1,000 gallons per minute from a new well 3,500 feet to the southwest that was drilled to provide water for Marcellus gas-well operations. Results of simulations indicate that during average hydrologic conditions, infiltration from Straight Run, a tributary to Marsh Creek, provides nearly all the water to the NARL wells. During dry conditions, the areas contributing recharge expand such that Asaph Run contributes about half of the water to the NARL wells when withdrawals are 1,000 or 2,000 gallons per minute. The addition of a simulated withdrawal of 1,000 gallons per minute from the nearby new well does not substantially affect the sources of water captured by the NARL wells. These results are subject to some limitations. The water-quality samples represent a snapshot of groundwater chemistry for only one hydrologic condition; the concentrations of some constituents may change temporally. In addition, samples were collected and analyzed for hydrocarbon gases, but not organic constituents associated with hydraulic fracturing; additional sampling for these constituents would provide a more complete water-quality baseline. The sources contributing water to the NARL wells and the new well were simulated by use of a simplified one-layer model of the glacial sand and gravel aquifer for steady-state conditions that in reality are never achieved. Steady-state simulations of dry hydrologic conditions show that it is possible for the NARL wells to capture water from Asaph Run; however, maps of simulated groundwater time-of-travel indicate that a dry period of unusually long duration would be required. A better analysis could be done by recalibrating the groundwater-flow model with a finite-difference grid having multiple layers, cells smaller than the 200-foot by 200-foot cells used in this study, and transient stress periods.

Pennsylvania

Geological Survey research 1972, Chapter C

This collection of 37 short papers is the second published chapter of "Geological Survey Research 1972." The papers report on scientific and economic results of current work by members of the Conservation, Geologic, and Water Resources Divisions of the U.S. Geological Survey. Chapter A, to be published later in the year, will present a summary of significant results of work done ~n fiscal year 1972, together with lists of investigations in progress, cooperating agencies, and Geological Survey offices. "Geological Survey Research 1972" is the thirteenth volume of the annual series Geological Survey Research. The twelve volumes already published are listed below, with their series designations.

Professional Paper

Effects of summer flow augmentation on the migratory behavior and survival of juvenile Snake River fall Chinook salmon. Annual report 2005

This report summarizes results of research activities conducted in 2004 and years previous to aid in the management and recovery of fall Chinook salmon Oncorhynchus tshawytscha in the Columbia River basin. For detailed summaries, we refer the reader to the abstracts given on the second page of each chapter. The Annual Reporting section includes information provided to fishery managers in-season and post-season, and it contains a detailed summary of life history and survival statistics on wild Snake River fall Chinook salmon juveniles for the years 1992-2004. Publication is a high priority of our staff. Publication provides our results to a wide audience, and it insures that our work meets high scientific standards. The Bibliography of Published Journal Articles section provides citations for peer-reviewed papers co-authored by personnel of project 1991-02900 that were written or published from 1998 to 2005.

Idaho, Washington

Concentrations of glyphosate, its degradation product, aminomethylphosphonic acid, and glufosinate in ground- and surface-water, rainfall, and soil samples collected in the United States, 2001-06

The U.S. Geological Survey conducted a number of studies from 2001 through 2006 to investigate and document the occurrence, fate, and transport of glyphosate, its degradation product, aminomethylphosphonic acid (AMPA), and glufosinate in 2,135 ground- and surface-water samples, 14 rainfall samples, and 193 soil samples. Analytical methods were developed to detect and measure glyphosate, AMPA, and glufosinate in water, rainfall, and soil. Results show that AMPA was detected more frequently and occurred at similar or higher concentrations than the parent compound, glyphosate, whereas glufosinate was seldom found in the environment. Glyphosate and AMPA were detected more frequently in surface water than in ground water. Trace levels of glyphosate and AMPA may persist in the soil from year to year. The methods and data described in this report are useful to researchers and regulators interested in the occurrence, fate, and transport of glyphosate and AMPA in the environment.

Scientific Investigations Report

Biodiversity and Habitat Markets—Policy, Economic, and Ecological implications of Market-Based Conservation

This report is a primer on market-like and market-based mechanisms designed to conserve biodiversity and habitat. The types of markets and market-based approaches that were implemented or are emerging to benefit biodiversity and habitat in the United States are examined. The central approaches considered in this report include payments for ecosystem services, conservation banks, habitat exchanges, and eco-labels. Based on literature reviews and input from experts and practitioners, the report characterizes each market-based approach including policy context and structure; the theoretical basis for applying market-based approaches; the ecological effectiveness of practices and tools for measuring performance; and the future outlook for biodiversity and habitat markets. This report draws from previous research and serves as a summary of pertinent information associated with biodiversity and habitat markets while providing references to materials that go into greater detail on specific topics.

Circular

Geological Survey research 1972

This collection of 30 short papers is the third published chapter of "Geological Survey Research 1972." The papers report on scientific and economic results of current work by members of the Geologic and Water Resources Divisions of the U.S. Geological Survey. Chapter A, to be published later in the year, will present a summary of significant results of work done in fiscal year 1972, together with lists of investigations in progress, cooperating agencies, and Geological Survey offices. "Geological Survey Research 1972" is the thirteenth and last volume of the annual series Geological Survey Research. The short-papers chapters (B, C, and D) will be replaced in 197 3 by the "Journal of Research of the U.S. Geological Survey," and the summary chapter (A) will be published as a separate professional paper. The twelve volumes already published are listed below, with their series designations.

Professional Paper

Population Dynamics of Adult Lost River (Deltistes luxatus) and Shortnose (Chasmistes brevirostris) Suckers in Clear Lake Reservoir, California, 2006-08

We report results from ongoing research into the population dynamics of endangered Lost River and shortnose suckers in Clear Lake Reservoir, California. Results are included for sampling that occurred from fall 2006 to spring 2008. We summarize catches and passive integrated transponder tagging efforts from trammel net sampling in fall 2006 and fall 2007, and report on detections of tagged suckers on remote antennas in the primary spawning tributary, Willow Creek, in spring 2007 and spring 2008. Results from trammel net sampling were similar to previous years, although catches of suckers in fall 2006 were lower than in 2007 and past years. Lost River and shortnose suckers combined made up about 80 percent of the sucker catch in each year, and more than 2,000 new fish were tagged across the 2 years. Only a small number of the suckers captured in fall sampling were recaptures of previously tagged fish, reinforcing the importance of remote detections of fish for capture-recapture analysis. Detections of tagged suckers in Willow Creek were low in spring 2007, presumably because of low flows. Nonetheless, the proportions of tagged fish that were detected were reasonably high and capture-recapture analyses should be possible after another year of data collection. Run timing for Lost River and shortnose suckers was well described by first detections of individuals by antennas in Willow Creek, although we may not have installed the antennas early enough in 2008 to monitor the earliest portion of the Lost River sucker migration. The duration and magnitude of the spawning runs for both species were influenced by flows and water temperature. Flows in Willow Creek were much higher in 2008 than in 2007, and far more detections were recorded in 2008 and the migrations were more protracted. In both years and for both species, migrations began in early March at water temperatures between 5 and 6 deg C and peaks were related to periods of increasing water temperature. The sex ratio of Lost River suckers detected in Willow Creek was skewed toward males, despite consistently more females having been tagged in fall sampling. This pattern indicates that some tagged female Lost River suckers may be spawning elsewhere in the system, and we intend to investigate this possibility to verify or alter the representativeness of our spring monitoring. Length frequency analysis of fall trammel net catches showed that the populations of both species in Clear Lake Reservoir have undergone major demographic transitions during the last 15 years. In the mid-1990s, the populations were dominated by larger fish and showed little evidence of recent recruitment. These larger fish apparently disappeared in the late 1990s and early 2000s, and the populations are now dominated by fish that recruited into the adult populations in the late 1990s. The length frequencies from the last 4 years provide evidence of consistent recruitment into the Lost River sucker population, but provide no such evidence for the shortnose sucker population. Overall, annual growth rates for both species in Clear Lake were 2-4 times greater than growth rates for conspecifics in Upper Klamath Lake. However, little or no growth occurred for either species in Clear Lake between 2006 and 2007. Based on available evidence, we are unable to fully explain differences in growth rates between systems or among years within Clear Lake.

Open-File Report

Geochemical data from produced water contamination investigations: Osage-Skiatook Petroleum Environmental Research (OSPER) sites, Osage County, Oklahoma

We report chemical and isotopic analyses of 345 water samples collected from the Osage-Skiatook Petroleum Environmental Research (OSPER) project. Water samples were collected as part of an ongoing multi-year USGS investigation to study the transport, fate, natural attenuation, and ecosystem impacts of inorganic salts and organic compounds present in produced water releases at two oil and gas production sites from an aging petroleum field located in Osage County, in northeast Oklahoma. The water samples were collected primarily from monitoring wells and surface waters at the two research sites, OSPER A (legacy site) and OSPER B (active site), during the period March, 2001 to February, 2005. The data include produced water samples taken from seven active oil wells, one coal-bed methane well and two domestic groundwater wells in the vicinity of the OSPER sites.

Oklahoma

Geological sampling data and benthic biota classification: Buzzards Bay and Vineyard Sound, Massachusetts

Sea-floor sample collection is an important component of a statewide cooperative mapping effort between the U.S. Geological Survey (USGS) and the Massachusetts Office of Coastal Zone Management (CZM). Sediment grab samples, bottom photographs, and video transects were collected within Vineyard Sound and Buzzards Bay in 2010 aboard the research vessel Connecticut . This report contains sample data and related information, including analyses of surficial-sediment grab samples, locations and images of sea-floor photography, survey lines along which sea-floor video was collected, and a classification of benthic biota observed in sea-floor photographs and based on the Coastal and Marine Ecological Classification Standard (CMECS). These sample data and analyses information are used to verify interpretations of geophysical data and are an essential part of geologic maps of the sea floor. These data also provide a valuable inventory of benthic habitat and resources. Geographic information system (GIS) data, maps, and interpretations, produced through the USGS and CZM mapping cooperative, are intended to aid efforts to manage coastal and marine resources and to provide baseline information for research focused on coastal evolution and environmental change.

Massachusetts

U.S. Geological Survey research in radioactive waste disposal - Fiscal years 1983, 1984, and 1985

The report summarizes progress on geologic and hydrologic research related to the disposal of radioactive wastes. The research is described according to whether it is related most directly to: (1) high-level and transuranic wastes, (2) low-level wastes, or (3) uranium mill tailings. Included is research applicable to the identification and geohydrologic characterization of waste-disposal sites, to investigations of specific sites where wastes have been stored, and to studies of regions or environments where waste-disposal sites might be located. A significant part of the activity is concerned with techniques and methods for characterizing disposal sites and studies of geologic and hydrologic processes related to the transport and (or) retention of waste radionuclides.

Water-Resources Investigations Report

Applications of research from the U.S. Geological Survey program, assessment of regional earthquake hazards and risk along the Wasatch Front, Utah

INTERACTIVE WORKSHOPS: ESSENTIAL ELEMENTS OF THE EARTHQUAKE HAZARDS RESEARCH AND REDUCTION PROGRAM IN THE WASATCH FRONT, UTAH: Interactive workshops provided the forum and stimulus necessary to foster collaboration among the participants in the multidisciplinary, 5-yr program of earthquake hazards reduction in the Wasatch Front, Utah. The workshop process validated well-documented social science theories on the importance of interpersonal interaction, including interaction between researchers and users of research to increase the probability that research will be relevant to the user's needs and, therefore, more readily used. REDUCING EARTHQUAKE HAZARDS IN UTAH: THE CRUCIAL CONNECTION BETWEEN RESEARCHERS AND PRACTITIONERS: Complex scientific and engineering studies must be translated for and transferred to nontechnical personnel for use in reducing earthquake hazards in Utah. The three elements needed for effective translation, likelihood of occurrence, location, and severity of potential hazards, and the three elements needed for effective transfer, delivery, assistance, and encouragement, are described and illustrated for Utah. The importance of evaluating and revising earthquake hazard reduction programs and their components is emphasized. More than 30 evaluations of various natural hazard reduction programs and techniques are introduced. This report was prepared for research managers, funding sources, and evaluators of the Utah earthquake hazard reduction program who are concerned about effectiveness. An overview of the Utah program is provided for those researchers, engineers, planners, and decisionmakers, both public and private, who are committed to reducing human casualties, property damage, and interruptions of socioeconomic systems. PUBLIC PERCEPTIONS OF THE IMPLEMENTATION OF EARTHQUAKE MITIGATION POLICIES ALONG THE WASATCH FRONT IN UTAH: The earthquake hazard potential along the Wasatch Front in Utah has been well defined by a number of scientific and engineering studies. Translated earthquake hazard maps have also been developed to identify areas that are particularly vulnerable to various causes of damage such as ground shaking, surface rupturing, and liquefaction. The implementation of earthquake hazard reduction plans are now under way in various communities in Utah. The results of a survey presented in this paper indicate that technical public officials (planners and building officials) have an understanding of the earthquake hazards and how to mitigate the risks. Although the survey shows that the general public has a slightly lower concern about the potential for economic losses, they recognize the potential problems and can support a number of earthquake mitigation measures. The study suggests that many community groups along the Wasatch Front, including volunteer groups, business groups, and elected and appointed officials, are ready for action-oriented educational programs. These programs could lead to a significant reduction in the risks associated with earthquake hazards. A DATA BASE DESIGNED FOR URBAN SEISMIC HAZARDS STUDIES: A computerized data base has been designed for use in urban seismic hazards studies conducted by the U.S. Geological Survey. The design includes file structures for 16 linked data sets, which contain geological, geophysical, and seismological data used in preparing relative ground response maps of large urban areas. The data base is organized along relational data base principles. A prototype urban hazards data base has been created for evaluation in two urban areas currently under investigation: the Wasatch Front region of Utah and the Puget Sound area of Washington. The initial implementation of the urban hazards data base was accomplished on a microcomputer using dBASE III Plus software and transferred to minicomputers and a work station. A MAPPING OF GROUND-SHAKING INTENSITIES FOR SALT LAKE COUNTY, UTAH: This paper documents the development of maps showing a

Professional Paper

Fifth special report of the Hawaiian Volcano Observatory of the Hawaiian Volcano Research Association and the U.S. Geological Survey: Abrasion hardness

After reviewing the work of sclerometry, this paper shows that yielding and relative softness are the mechanical basis of what should be called malacometry. The experiments have been made with diamond drills, ring cuts, end millers and grinding wheels. Auerbach's "limited scope of the Mohs list" is quantitatively confirmed. The wear of diamonds is examined. A program is carried out, for rotary or annular abrasion by diamond under three applications of energy, each progressively slower. A selected commercial talc is the control substance of softness value 100. The instruments used are synchronous motors, drill presses, wheel grinders, and watchmaker lathes. Some 200 minerals, woods, metals, glasses and plastics were originally measured. Hardness tables and curves are shown for comparison with volumetric abradability. For a Mohs succession the softer substances abrade relatively more under higher energy of contact friction, and any one substance shows higher relative values under lower energy of attrition; in other words, under slower scratching. An artificially cut diamond octahedron gives more consistent results than a natural crystal, under light pressures. Standard successions of relative abradability measurements do not hold good under different energies of attack. Functions of plasticity, brittleness, cleavage, powder lubricity, ductility and the like introduce various anomalies, and constancy of pressure varies with variable yielding. The supposition that rhythmic instrumental abrading will hold its mechanical constants, while the substance attacked yields in accord with its own surface molecular mobility relative to a control substance, is only approximately true. At low energies the approximation is better than at high, but at high speeds the wear of tool is less. Hence the advantage of using with slow speed a replaceable tool. Substances of different categories such as steels and woods, differ in behavior from minerals. The Mohs System has the great advantage of extending the controls from mineral to mineral up through the whole scale, and is purely qualitative. It is not numerically quantitative at all in terms of equal units. A principal result of this investigation is that 80 per cent of the Mohs Scale, Numbers 3 to 10, are by common consent within 1 per cent of a malacometric scale numbered 1 to 100. The scientists who determined this relation were the sclerometry investigators of the nineteenth century, who mistakenly thought that the wide intervals of sclerometry are between the hard minerals. They used the reciprocals of the measures of yielding. The simple scratch tester finally arrived at is quite different from the instruments of Parts II and III. It eliminates diamond drilling, retains the Mohs controls and utilizes a dental grinding wheel and a modern low speed motor. The object of this research has been to design a simple instrument for many uses, especially for the mechanic's shop. It is planned for manufacture at an early date. The author is indebted to Dr. Earl Ingerson, Chief, Geochemistry and Petrology Branch, for critical correction and approval of this paper, by authority of the Director, U. S. Geological Survey.

Report of the Hawaiian Volcano Observatory