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At least 361 records · Page 20Linked to original sources
USGS2024

Diet of Dermatemys mawii, an aquatic turtle that relies heavily on terrestrial vegetation

Dermatemys mawii is a critically endangered freshwater turtle endemic to Central America. In the wild, these turtles are thought to be wholly herbivorous as adults and feed on a variety of vegetation; however, no studies have quantitatively assessed potential dietary differences based on biotic and abiotic factors. The purpose of our study was to describe and quantify the wild diet of D. mawii and assess differences based on habitat, maturity, and sex. We evaluated the stomach contents of 66 turtles legally harvested by local hunters for personal consumption throughout the country of Belize. Percent volume (by displacement) and percent frequency of each stomach item were used to calculate an index of relative importance (IRI). One algal and 6 plant families contributed to an overall diet composition consisting of leaves, flowers, stems, seedpods, seeds, and fruit. Rocks and invertebrates were also consumed, although we believe these to be incidental consumption. The leaves of the riparian tree Inga edulis were present in 73.1% of turtle stomachs and accounted for almost half of the total volume of all stomach contents combined. We used Spearman rank correlation coefficients to test the null hypothesis that there was no correlation in the rankings of stomach items (i.e., there were differences) when comparing turtles by habitat, age, and sex. There were significant differences in the ranking of food items between river and lagoon habitats, with lagoon turtles relying heavily on the algae Nitella sp.; however, the stomach contents from both habitats were equally diverse (H rivers = 1.68, H lagoons = 1.64). There were no differences in IRIs between adults and juveniles or between males and females. Our results emphasize the importance of habitat in D. mawii diet selection and the importance of leaves from riparian plants species that are shed into their aquatic habitats.

Chelonian Conservation and Biology↗
USGS2015

Diet of yellow-billed loons ( Gavia adamsii ) in Arctic lakes during the nesting season inferred from fatty acid analysis

Understanding the dietary habits of yellow-billed loons ( Gavia adamsii ) can give important insights into their ecology, however, studying the diet of loons is difficult when direct observation or specimen collection is impractical. We investigate the diet of yellow-billed loons nesting on the Arctic Coastal Plain of Alaska using quantitative fatty acid signature analysis. Tissue analysis from 26 yellow-billed loons and eleven prey groups (nine fish species and two invertebrate groups) from Arctic lakes suggests that yellow-billed loons are eating high proportions of Alaska blackfish ( Dallia pectoralis ), broad whitefish ( Coregonus nasus ) and three-spined stickleback ( Gasterosteus aculeatus ) during late spring and early summer. The prominence of blackfish in diets highlights the widespread availability of blackfish during the early stages of loon nesting, soon after spring thaw. The high proportions of broad whitefish and three-spined stickleback may reflect a residual signal from the coastal staging period prior to establishing nesting territories on lakes, when loons are more likely to encounter these species. Our analyses were sensitive to the choice of calibration coefficient based on data from three different species, indicating the need for development of loon-specific coefficients for future study and confirmation of our results. Regardless, fish that are coastally distributed and that successfully overwinter in lakes are likely key food items for yellow-billed loons early in the nesting season.

Alaska↗
USGS2022

Environmental filtering controls soil biodiversity in wet tropical ecosystems

The environmental factors controlling soil biodiversity along resource gradients remain poorly understood in wet tropical ecosystems. Aboveground biodiversity is expected to be driven by changes in nutrient availability in these ecosystems, however, much less is known about the importance of nutrient availability in driving soil biodiversity. Here, we combined a cross-continental soil survey across tropical regions with a three decades' field experiment adding nitrogen (N) and phosphorus (P) (100 kg N ha −1 y −1 and 100 kg P ha −1 y −1 ) to Hawai'ian tropical forests with contrasting substrate ages (300 and 4,100,000 years) to investigate the influence of nutrient availability to explain the biodiversity of soil bacteria, fungi, protists, invertebrates and key functional genes. We found that soil biodiversity was driven by soil acidification during long-term pedogenesis and across environmental gradients, rather than by nutrient limitations. In fact, our results showed that experimental N additions caused substantial acidification in soils from Hawai'i. These declines in pH were related to large decreases in soil biodiversity from tropical ecosystems in four continents. Moreover, the microbial activity did not change in response to long-term N and P additions. We concluded that environmental filtering drives the biodiversity of multiple soil organisms, and that the acidification effects associated with N additions can further create substantial undesired net negative effects on overall soil biodiversity in naturally tropical acid soils. This knowledge is integral for the understanding and management of soil biodiversity in tropical ecosystems globally.

Hawai'i↗
USGS2016

Detecting significant change in stream benthic macroinvertebrate communities in wilderness areas

A major challenge in the biological monitoring of stream ecosystems in protected wilderness areas is discerning whether temporal changes in community structure are significantly outside of a reference condition that represents natural or acceptable annual variation in population cycles. Otherwise sites could erroneously be classified as impaired. Long-term datasets are essential for understanding these trends, to ascertain whether any changes in community structure significantly beyond the reference condition are permanent shifts or with time move back to within previous limits. To this end, we searched for long-term (>8 years) quantitative data sets of macroinvertebrate communities in wadeable rivers collected by similar methods and time of year in protected wilderness areas with minimal anthropogenic disturbance. Four geographic areas with datasets that met these criteria in the USA were identified, namely: McLaughlin Nature Reserve in California (1 stream), Great Smoky Mountains National Park in Tennesse-North Carolina (14 streams), Wind River Wilderness Areas in Wyoming (3 streams) and Denali National Park and Preserve in Alaska (6 streams). Two statistical approaches were applied: Taxonomic Distinctness (TD) to describe changes in diversity over time and non-metric multidimensional scaling (MDS) to describe changes over time in community persistence (Jaccards Index) and community stability (Bray–Curtis Index). Control charts were used to determine if years in MDS plots were significantly outside a reference condition. For Hunting Creek, TD showed three years outside natural variation which could be attributed to severe hydrological events but years outside the natural-variation funnel at sites in other geographical areas were inconsistent and could not be explained by environmental variables. TD identified simulated severe pollutant events which caused the removal of entire invertebrate assemblages but not simulated water temperature shifts. Within a region, both MDS analyses typically identified similar years as exceeding reference condition variation, illustrating the utility of the approach for identifying wider spatial scale effects that influence more than one stream. MDS responded to both simulated water temperature stress and a pollutant event, and generally outlying years on MDS plots could be explained by environmental variables, particularly higher precipitation. Multivariate control charts successfully identified whether shifts in community structure identified by MDS were significant and whether the shift represented a press disturbance (long-term change) or a pulse disturbance. We consider a combination of TD and MDS with control charts to be a potentially powerful tool for determining years significantly outside of a reference condition variation.

Alaska, California, North Carolina, Tennesse, Wyom↗
USGS2003

Relations of biological indicators to nutrient data for lakes and streams in Pennsylvania and West Virginia, 1990-98

The Clean Water Action Plan of 1998 provides a blueprint for federal agencies to work with states, tribes, and other stakeholders to protect and restore the Nation's water resources. The plan includes an initiative that addresses the nutrient-enrichment problem of lakes and streams across the United States. The U.S. Environmental Protection Agency (USEPA) is working to set nutrient criteria by nationwide nutrient ecoregions that are an aggregation of the Omernik level III ecoregions. Because low levels of nutrients are necessary for healthy streams and elevated concentrations can cause algal blooms that deplete available oxygen and kill off aquatic organisms, criteria levels are to be set, in part, using the relation between chlorophyll a and concentrations of total nitrogen and total phosphorus. Data from Pennsylvania and West Virginia, collected between 1990 and 1998, were analyzed for relations between chlorophyll a , nutrients, and other explanatory variables. Both phytoplankton and periphyton chlorophyll a concentrations from lakes and streams were analyzed separately within each of the USEPA nutrient ecoregions located within the boundaries of the two states. These four nutrient ecoregions are VII (Mostly Glaciated Dairy), VIII (Nutrient Poor, Largely Glaciated Upper Midwest and Northeast), IX (Southeastern Temperate Forested Plains and Hills), and XI (Central and Eastern Forested Uplands). Phytoplankton chlorophyll a concentrations in lakes were related to total nitrogen, total phosphorus, Secchi depth, concentration of dissolved oxygen, pH, water temperature, and specific conductivity. In nutrient ecoregion VII, nutrients were not significant predictors of chlorophyll a concentrations. Total nitrogen, Secchi depth, and pH were significantly related to phytoplankton chlorophyll a concentrations in nutrient ecoregion IX. Lake periphyton chlorophyll a concentrations from nutrient ecoregion XI were related to total phosphorus rather than total nitrogen, Secchi depth, and pH. In all cases, Secchi depth was inversely related to the chlorophyll a concentrations in a lake. Nutrient ecoregion VIII had too few samples for any type of analysis. Streams within the different nutrient ecoregions had many variables that were significantly related to periphyton chlorophyll a concentrations. These variables consisted of total nitrogen, total phosphorus, drainage area, percent forest cover, several macroinvertebrate indices, pH, basin slope, total residue, total suspended solids, and water temperature. Nutrients were not significantly related to periphyton chlorophyll a in streams within nutrient ecoregions VII or IX but were in nutrient ecoregion XI. Drainage area, percent forest cover, and several invertebrate indices were significant variables in nutrient ecoregion VII. Percent forest cover and several invertebrate indices had a negative relation with chlorophyll a concentrations in these streams. Percent forest cover and basin slope had a negative effect on periphyton in nutrient ecoregion IX streams. Light availability was more critical to periphyton growth in streams than nutrients. Ecoregion XI had enough samples to do seasonal analyses. Summer-season periphyton chlorophyll a concentrations in nutrient ecoregion XI streams were positively related to total phosphorus and drainage area but negatively related to percent forest cover. Summer-season phytoplankton in streams was related to different variables within the same nutrient ecoregion. Both total nitrogen and total phosphorus were positively related with chlorophyll a concentrations as well as basin slope, total residue, and total suspended solids but negatively related to pH. The winter stream phytoplankton chlorophyll a concentrations were related to water temperature only.

Water-Resources Investigations Report↗
USGS2016

Observations of recruitment and colonization by tunicates and associated invertebrates using giant one-meter 2 recruitment plates at Woods Hole, Massachusetts

Large recruitment plates measuring 1 × 1 m were deployed over an 18-month period from September 2013 to March 2015 for the purpose of documenting recruitment and colonization processes of marine invertebrate species at Woods Hole, Massachusetts. Each side of two plates was subdivided into 16 subareas (25 × 25 cm), and an observational strategy was developed whereby, at approximately two-week intervals, a different subarea was cleaned. Using this approach, we were able to photographically document species recruitment and growth interactions. Water temperature records from the site show that steady warming and cooling between 3 and 20° C changed at a mean rate of 0.2 ° C d -1 . However, temperature changes during the coolest and warmest parts of the temperature cycle were highly variable. In 2014, between the first and last occurrence of 0° C, temperatures were ≤0° C 15 percent of the time, but in 2015 temperatures were ≤0° C 93 percent of the time. In 2014, between the first and last occurrence of 21° C, temperatures were ≥21° C 88 percent of the time, and this warm period correlated with the disappearance of the hydroid Ectopleura crocea , the solitary tunicates Ascidiella aspersa and Ciona intestinalis , and the 2013 generation of Botrylloides violaceus . In Woods Hole, large plates provided enough space to accommodate both fast- and slow-colonizing species, resulting in the establishment of a diverse assemblage that was observed over a long time period. The most successful colonizing species had relatively long reproductive and recruitment periods, grew rapidly, repelled settlement onto their surfaces by larvae of any species, defended themselves against overgrowth by any species, overwintered, and lived a long time. Of the three dominant species observed in this study, the colonial tunicates Didemnum vexillum and Botrylloides violaceus had these qualities; the encrusting colonial bryozoan Schizoporella unicornis had all but one, it grew more slowly than the others. Barnacles constituted the only biological substrate that was effectively colonized by other species, both by larval recruitment and overgrowth. In Woods Hole, after a substrate had become fully colonized, there was very little opportunity for new recruitment or colony growth until new substrate opened after the death of colonies and individuals and the disappearance of biogenic structures such as amphipod tubes. An understanding of colonization processes utilized by invasive species allows prediction of their potential effects on ecosystems in areas where they are not yet present.

Massachusetts↗
USGS2017

Asynchrony in craniomandibular development and growth in Enhydra lutris nereis (Carnivora: Mustelidae): Are southern sea otters born to bite?

Weaning represents a major ontogenetic dietary shift in southern sea otters ( Enhydra lutris nereis ), as juveniles must transition from depending on mother’s milk to independently processing hard-shelled invertebrates. When the skulls of juveniles have reached sufficient maturity to transition to a durophagous diet remains to be investigated. Here, we conducted a comprehensive analysis of skull development and growth and sexual dimorphism using geometric morphometric approaches in 204 southern sea otter skulls. We found that southern sea otters of both sexes exhibit dramatic changes in cranial and mandibular shape and size over ontogeny. Although the majority of these changes occur in the pup stage, full development and growth of the skull does not occur until well after weaning. We hypothesize that the slower maturation of the crania of newly weaned juveniles serves as a handicap by constraining jaw adductor muscle size, biting ability and feeding on hard-shelled prey. In our analysis of sexual dimorphism, we found significant sexual shape and size dimorphism in adult craniomandibular morphology that arose through differences in developmental and growth rates and duration. We postulate that males are selected to attain mature crania faster to presumably reach adult biting ability sooner, gaining a competitive advantage in obtaining food and in male–male agonistic interactions.

Biological Journal of the Linnean Society↗
USGS2023

Integrated science strategy for assessing and monitoring water availability and migratory birds for terminal lakes across the Great Basin, United States

Executive Summary In 2022, the U.S. Geological Survey (USGS) established the Saline Lake Ecosystems Integrated Water Availability Assessment (IWAAs) to monitor and assess the hydrology of terminal lakes in the Great Basin and the migratory birds and other wildlife dependent on those habitats. Scientists from across the USGS (with specialties in water quantity, water quality, limnology, avian biology, data science, landscape ecology, and science communication) formed the Saline Lake Ecosystems IWAAs Team. The team has developed this regional strategic science plan to guide data collection and assessment activities at terminal lakes in the Great Basin. The U.S. Congress requested the USGS to establish the Saline Lake Ecosystems IWAAs in response to historically low water levels at terminal lakes and associated wetlands across the Great Basin. Not all Great Basin terminal lakes have high salinity; however, all terminal lakes occur in endorheic, closed, basins with no surface-water outflow. Low lake levels across the Great Basin are the result of increased water use for agriculture and municipalities, drought conditions, and a warming climate. Great Basin terminal lake water extents have decreased by as much as 90 percent over the last 150 years, and terminal lake wetlands have decreased in area by as much as 47 percent since 1984. Lake elevations and wetland areas are primarily supported by freshwater inputs from snowmelt feeding upgradient rivers, streams, and springs. These freshwater inputs have been severely reduced because of continued and increased surface-water diversions and surface-water capture through groundwater pumping for agriculture, mining, and public supply as well as unprecedented drought conditions and warming temperatures related to climate change. Water quality, specifically salinity, is highly variable for terminal lakes of the Great Basin, and this variability is a result of the balance between freshwater inflow and evaporation. Variability of salinity at each of the terminal lakes can be affected by lake morphology, hydrogeologic features of the basin, annual variability in weather patterns, and changes in upgradient water use. Hypersaline terminal lakes provide abundant food resources such as brine shrimp and brine flies that support nesting and migrating birds. The density and composition of invertebrates are closely tied to lake salinity. Increased salinity can exceed the tolerance of invertebrates, severely limiting their biomass. In contrast, decreased salinity can lead to altered invertebrate community composition, reducing the abundance of optimal avian prey resources. Great Basin terminal lake ecosystems, including open-water and adjacent aquatic and terrestrial environments, provide resources necessary to sustain many animal populations throughout the year. Although a variety of taxa use terminal lakes, these ecosystems are of acute importance for the millions of migratory waterbirds (for example, shorebirds, wading birds, and waterfowl) dependent on the network of terminal lakes and their associated wetlands. Migratory birds transiting the Pacific and Central Flyways use Great Basin terminal lake ecosystems throughout the year to feed, nest, and transit between wintering and breeding ranges. As such, successful conservation of birds and their habitats requires coordinated management of water and habitats across the Great Basin network of terminal lakes and wetlands. The linkages between water availability and ecosystem vulnerability of terminal lakes in the Great Basin are not well understood. The vulnerability of terminal lakes is related to the factors driving change and adaptive capacity of the lake ecosystem. Saline lake ecosystems are vulnerable when changes in water quantity affect ecosystem function. Water quantity affects salinity, which affects food webs and habitat; these linkages can be investigated with water-quality and food web monitoring. Water quantity also affects inundated habitat, which can be quantified through remote sensing. It is necessary to quantify hydroclimatic and water use controls on water availability to terminal lakes to assess the response of the ecosystems. Remotely sensed data can provide a broad-scale and long-term synoptic view of terminal lake hydrologic characteristics, but ground observations are required to interpret changes in water quality and ecological functions. Some terminal lake basins have ongoing monitoring and modeling efforts within the Great Basin (for example, Great Salt Lake, Carson River Basin), yet most monitoring locations are hydrologically upgradient and too far away from lake inflows to provide an accurate assessment of hydrological trends for the lake ecosystems. Other terminal lakes have no long-term hydrological monitoring in their respective watersheds (for example, Lake Abert). Ecological data collection in the Great Basin is also insufficient to understand how many birds exist on the landscape, how birds use the mosaic of terminal-lake habitats as an interconnected system, and how Great Basin terminal lakes are linked to the larger continental system of the Pacific and Central Flyways. Across agencies and organizations, tracking bird movement, abundance, and diversity is inconsistent, with some lakes having once- or twice-a-year bird survey efforts and a few locations having more intensive ecological data-gathering efforts (for example, Great Salt Lake, Lake Abert). Bridging hydrological and ecological information gaps will improve understanding of the trends in water supply and water quality, habitat availability and usage, and impacts on vulnerable waterbird species, all of which would be used by managers in coordinated conservation of this unique network of terminal-lake habitats. The terminal lakes of the Great Basin are part of the Basin and Range physiographic province that extends from the Colorado Plateau on the east to the Sierra Nevada on the west, and from the Snake River Plain on the north to the Garlock fault and the Mojave block on the south. The Great Basin is larger than 650,000 square kilometers and encompasses most of the State of Nevada but also extends to western Utah, eastern California, southeastern Idaho, southwestern Wyoming, and southeastern Oregon. The climate is arid to semiarid with a hydrologic regime that is snowmelt dominated, providing as much as 75 percent of total annual runoff for the region. Terminal lakes of the Great Basin occupy the lowest areas of closed (endorheic) drainage basins, such that lake levels and water quality respond rapidly to surface-water inflow. Terminal lakes provide local and regional economic value to the States in the Great Basin, including mineral extraction, aquaculture, public works, and recreational uses. As an example, assessments of Great Salt Lake’s ecological health and economic impact find hemispheric importance for the former and regional importance for the latter. Great Salt Lake creates about 7,000 jobs and $2 billion of economic output per year, most of which would be lost with further declines in lake level. The objectives of this Science Strategy are threefold: (1) to identify how changing water availability affects the quality, diversity, and abundance of habitats supporting continental waterbird populations; (2) to highlight the scientific monitoring and assessment needs of Great Basin terminal lakes; and (3) to support coordinated management and conservation actions to benefit those ecosystems, migratory birds, and other wildlife. There are long-term hydrological, ecological, and societal challenges associated with terminal lakes ecosystems in the Great Basin. This Science Strategy benefits partners by providing a conceptual model, nested at different spatial extents, that identifies key scientific information needs to inform coordinated implementation of management and conservation plans within and among hydrologic basins to address these complex challenges.

California, Idaho, Nevada, Oregon, Utah, Wyoming↗
USGS2004

The elusive baseline of marine disease: Are diseases in ocean ecosystems increasing?

Disease outbreaks alter the structure and function of marine ecosystems, directly affecting vertebrates (mammals, turtles, fish), invertebrates (corals, crustaceans, echinoderms), and plants (seagrasses). Previous studies suggest a recent increase in marine disease. However, lack of baseline data in most communities prevents a direct test of this hypothesis. We developed a proxy to evaluate a prediction of the increasing disease hypothesis: the proportion of scientific publications reporting disease increased in recent decades. This represents, to our knowledge, the first quantitative use of normalized trends in the literature to investigate an ecological hypothesis. We searched a literature database for reports of parasites and disease (hereafter “disease”) in nine marine taxonomic groups from 1970 to 2001. Reports, normalized for research effort, increased in turtles, corals, mammals, urchins, and molluscs. No significant trends were detected for seagrasses, decapods, or sharks/rays (though disease occurred in these groups). Counter to the prediction, disease reports decreased in fishes. Formulating effective resource management policy requires understanding the basis and timing of marine disease events. Why disease outbreaks increased in some groups but not in others should be a priority for future investigation. The increase in several groups lends urgency to understanding disease dynamics, particularly since few viable options currently exist to mitigate disease in the oceans.

PLoS Biology↗
USGS2005

The introduced ribbed mussel (Geukensia demissa) in Estero de Punta Banda, Mexico: Interactions with the native cord grass, Spartina foliosa

Introduced populations of Guekensia demissa occur on the west coast of North America. They have been reported in San Francisco Bay, four southern California wetlands, and in Estero de Punta Banda (EPB), Baja California Norte, Mexico. We randomly sampled benthic invertebrates in four habitat types within EPB: marsh, channel, mudflat and pan. Geukensia demissa was the most abundant bivalve in the wetland at EPB. It was significantly associated with the native cordgrass, Spartina foliosa, and occurred at higher average densities in vegetated marsh sites (24/m2) and Spartina-dominated tidal channels (35/m2), compared to mudflat (0/m2), and pan (0/m 2) sites. We estimated that the total biomass of this invader was over four times that of the next most abundant bivalve, Tagelus spp., in EPB. We examined G. demissa for parasites and found that only a few native parasites colonized this introduced host at very low prevalences and intensities. We performed bird surveys to determine the habitat overlap and potential impact of this mussel on the EPB population of light-footed clapper rails (Rallus longirostrus levipes), an endangered species in the United States. The high abundance of G. demissa in EPB, its presence in clapper rail habitat, and its known effects on salt marsh habitat in it's native range, warrant further investigations of the impact of this invader in EPB and elsewhere. ?? Springer 2005.

Biological Invasions↗
USGS2002

Wildlife association with human‐altered water sources in semiarid vegetation communities

Based on common use in wildlife management, we hypothesized that human‐constructed water sources influence faunal communities detectably compared to similar habitats that lack water. We examined 20 wildlife water units and 20 paired comparison sites without water from April to August 1992 in semiarid southern New Mexico to assess animal species associations. We sampled sites by using small‐mammal live traps, herpetofaunal and invertebrate pitfall arrays, and 30‐minute time‐area counts. We compared animal species richness and species concordance among water units (rain catchments, earthen tanks, and windmills) and comparison sites in three vegetation communities (mixed scrub, grassland, and pinyon‐juniper). We detected 134 animal taxa during field sampling. Animal species richness did not differ between water units and comparison sites among vegetation communities. Amphibians were found only at water units but occur far from units during seasonal wet periods. Greater numbers of individual small mammals and herpetofauna at water units versus comparison sites likely related to debris and disturbed soil present near water units. Taxa detected at water units and comparison sites were 65% concordant overall; discordant taxa were those rarely detected. Our data implied that definitive effects of artificial water sources on native wildlife species were not detectable. Providing water sources may be a strategic management tool but must be viewed critically regarding effect on distribution of native, feral, and exotic animals. Water units should be developed only when and where clear objectives have been stated, natural water sources have been quantified, commitment exists to ensure continued function, and feral and exotic animals will not benefit to the detriment of native species.

New Mexico↗
USGS2008

Biomedical and veterinary science can increase our understanding of coral disease

A balanced approach to coral disease investigation is critical for understanding the global decline of corals. Such an approach should involve the proper use of biomedical concepts, tools, and terminology to address confusion and promote clarity in the coral disease literature. Investigating disease in corals should follow a logical series of steps including identification of disease, systematic morphologic descriptions of lesions at the gross and cellular levels, measurement of health indices, and experiments to understand disease pathogenesis and the complex interactions between host, pathogen, and the environment. This model for disease investigation is widely accepted in the medical, veterinary and invertebrate pathology disciplines. We present standard biomedical rationale behind the detection, description, and naming of diseases and offer examples of the application of Koch's postulates to elucidate the etiology of some infectious diseases. Basic epidemiologic concepts are introduced to help investigators think systematically about the cause(s) of complex diseases. A major goal of disease investigation in corals and other organisms is to gather data that will enable the establishment of standardized case definitions to distinguish among diseases. Concepts and facts amassed from empirical studies over the centuries by medical and veterinary pathologists have standardized disease investigation and are invaluable to coral researchers because of the robust comparisons they enable; examples of these are given throughout this paper. Arguments over whether coral diseases are caused by primary versus opportunistic pathogens reflect the lack of data available to prove or refute such hypotheses and emphasize the need for coral disease investigations that focus on: characterizing the normal microbiota and physiology of the healthy host; defining ecological interactions within the microbial community associated with the host; and investigating host immunity, host-agent interactions, pathology, pathogenesis, and factors that promote the pathogenicity of the causative agent(s) of disease.

Journal of Experimental Marine Biology and Ecology↗
USGS2012

Terrestrial and marine trophic pathways support young-of-year growth in a nearshore Arctic fish

River discharge supplies nearshore communities with a terrestrial carbon source that is often reflected in invertebrate and fish consumers. Recent studies in the Beaufort Sea have documented widespread terrestrial carbon use among invertebrates, but only limited use among nearshore fish consumers. Here, we examine the carbon source and diet of rapidly growing young-of-year Arctic cisco ( Coregonus autumnalis ) using stable isotope values (δ 13 C and δ 15 N) from muscle and diet analysis (stomach contents) during a critical and previously unsampled life stage. Stable isotope values (δ 15 N and δ 13 C) may differentiate between terrestrial and marine sources and integrate over longer time frames (weeks). Diet analysis provides species-specific information, but only from recent foraging (days). Average δ 13 C for all individuals was −25.7 ‰, with the smallest individuals possessing significantly depleted δ 13 C values indicative of a stronger reliance of terrestrial carbon sources as compared to larger individuals. Average δ 15 N for all individuals was 10.4 ‰, with little variation among individuals. As fish length increased, the proportion of offshore Calanus prey and neritic Mysis prey increased. Rapid young-of-year growth in Arctic cisco appears to use terrestrial carbon sources obtained by consuming a mixture of neritic and offshore zooplankton. Shifts in the magnitude or phenology of river discharge and the delivery of terrestrial carbon may alter the ecology of nearshore fish consumers.

Polar Biology↗
USGS2015

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2014

In 2014, the USGS LEBS successfully completed large vessel surveys in all three of Lake Erie’s basins. Lake Erie Biological Station’s primary vessel surveys included the Western Basin Forage Fish Assessment and East Harbor Forage Fish Assessment as well as contributing to the cooperative multi-agency Central Basin Hydroacoustics Assessment, the Eastern Basin Coldwater Community Assessment, and LTLA (see FTG, CWTG, and FTG reports, respectively). Results from the surveys contribute to Lake Erie Committee Task Group data needs and analyses of trends in Lake Erie’s fish communities. The cruise survey schedule in 2014 was greatly increased by LEBS’s participation in the Lake Erie CSMI, which consisted of up-to two weeks of additional sampling per month from April to October. CSMI is a bi-national effort that occurs at Lake Erie every five years with the purpose of addressing data and knowledge gaps necessary to management agencies and the Lake Erie LaMP. LEBS deepwater science capabilities also provided a platform for data collection by Lake Erie investigators from multiple agencies and universities including: the USGS GLSC, ODW, KSU, OSU, UM, PU, UT, and the USNRL. Samples from this survey are being processed and a separate report of the findings will be made available in a separate document. Our 2014 vessel operations were initiated in mid-April, as soon after ice-out as possible, and continued into early December. During this time, crews of the R/V Muskie and R/V Bowfin deployed 196 bottom trawls covering 48.5 km of lake-bottom, nearly 6 km of gillnet, collected data from 60 hydroacoustics transects, 285 lower trophic (i.e., zooplankton and benthos) samples, and 330 water quality measures (e.g., temperature profiles, water samples). Thus, 2014 was an intensive year of field activity. Our June and September bottom trawl surveys in the Western Basin were numerically dominated by Emerald Shiner, White Perch, and Yellow Perch; however, Freshwater Drum were dominant by biomass. Age-2+ Yellow Perch and White Perch diets from our western basin trawl had highest occurrences of benthic invertebrates in spring and fall. Hexagenia spp. accounted for >25% of Yellow Perch and White Perch diet composition (dry weight) in spring. We conducted an analysis using data from the past 6 years of our East Harbor survey to determine to what degree our new research vessel and trawl is affecting our ability to detect trends across the 50+ year time series. We also evaluated trends in water temperatue, dissolved oxygen, secchi depth and total Phosphorus from our LTLA sites near Vermilion, Ohio. Within the following report sections, we describe specific results from our primary surveys conducted in 2014.

Report↗
USGS2020

Impact of smallmouth bass predation on subyearling fall Chinook salmon over a broad river continuum

Smallmouth bass ( Micropterus dolomieu ) predation on subyearling fall Chinook salmon ( Oncorhynchus tshawytscha ) was examined in the Snake River (USA) to identify seasonal and habitat-related changes in bass diets, and associated subyearling consumption and loss in various riverine and impounded reaches. Smallmouth bass diets reflected opportunistic foraging that at times showed predation on subyearlings is influenced by the consumption of other prey such as crayfish, sand roller ( Percopsis transmontana ), and smaller invertebrates. Estimated loss of subyearlings was influenced by bass abundance and consumption rates. The highest bass abundances (> 1,000 bass/river kilometer) were observed in the upper reach of Hells Canyon early in April and May, and in Lower Granite Reservoir. Peak consumption rates of subyearlings (≥ 0.12 subyearlings/bass/day) occurred in the upper reach of Hells Canyon during May and in most reservoir reaches in June. Predation losses accumulated evenly along the river continuum from riverine to reservoir habitats. We estimated that 869,371 subyearlings could be lost to smallmouth bass predation between riverine production areas and Lower Granite Dam in a given year. To provide a context for this estimated loss, we provide an illustration of its potential effect on the adult population. Assuming no juvenile mortality occurred downstream of the dam and depending on smolt-to-adult return rates, this represented up to 3.9–16.0% of the potential adult run that could have returned to Lower Granite Dam had no subyearling predation by smallmouth bass occurred upstream of the dam. Although this study was limited by a number of assumptions and constraints, it does provide an illustration of how predation affects juvenile and adult salmon loss over a broad, changing river landscape.

Idaho, Oregon, Washington↗
USGS2020

Estimation of vital population rates to assess the relative health of mussel assemblages in the Upper Mississippi River

Native freshwater mussels are a guild of benthic, filter feeding invertebrates that perform important ecological functions in rivers. Because of their long lifespans (30–50 years or longer), mussels are slow to respond to human‐induced alterations. Thus, development of sensitive indicators of mussel population responses to river conditions and management would be beneficial. Compared to marine species, estimation of vital rates (e.g. survival, growth) in freshwater mussels has received little attention. We placed passively integrated transponder tags on 578 mussels of four species ( Amblema plicata , Cyclonaias pustulosa , Obliquaria reflexa , and Pleurobema sintoxia ) in a well‐studied mussel assemblage in a side channel of the upper Mississippi River. Growth and survival of tagged mussels were assessed annually for 4 years across core (high density) and peripheral (low density) areas of the assemblage. Overall survival was highly variable, ranging from c . 15 to 90%, and was related to life history, habitat quality, and hydrologic events. Survival, which varied significantly among species and over time, was consistently higher in the dense and species‐rich core of the mussel assemblage, relative to the periphery because substrates were consistently more stable in the core of the mussel bed relative to the periphery. Substrate movement during low flows was an order of magnitude lower in the core relative to the periphery, and survival was inversely related to stability of river substrates. Patterns in habitat‐specific survival indicate source–sink population dynamics such that mussels in the core habitat provide recruitment to the periphery, but mussels in the periphery are subject to unsustainably low survival; additional studies to track the source of recruitment in the periphery are needed to test this hypothesis. Growth rate did not vary significantly between core and peripheral areas but did vary by species. Growth rate (proportional change per year) declined with age, and was similar at mean age for A. plicata (0.016 per year), P. sintoxia (0.015 per year), and C. pustulosa (0.013 per year), but much lower for O. reflexa (0.008 per year). Effective management decisions for mussels requires a better understanding of how vital rates govern populations and how they vary across a suite of physical and biological factors. Information on how population vital rates vary among species and over time gives managers another tool to understand how mussels may respond to management actions such as habitat restoration projects. Given the importance of substrate stability inferred from this study, management actions that maintain or increase substrate stability are likely to result in high quality mussel assemblages and may restore a valuable component of ecosystem function in this region.

Minnesota, Wisconsin↗
USGS1998

Cyclopoid and harpacticoid copepods of the Laurentian Great Lakes

Historical collections of cyclopoid and harpacticoid copepod crustaceans in the Great Lakes have mainly been based on samples taken with plankton nets in deeper waters (>5 m). Of the non-calanoid copepod species known from the Great Lakes, 58 or 64 live primarily on or in the sediments and rarely are collected in plankton samples. Because of their small size, they are rarely retained in the coarse sieves used to concentrate samples of benthic invertebrates. Thus, the abundance and distribution of most species of these two groups of copepods have never been adequately documented in the Great Lakes. We examined the stomach contents of small, bottom-feeding fishes such as slimy sculpin which feed on benthic copepods that live in deep, inaccessible rocky areas of the Great Lakes to collect some of the material. We also collected in shallow nearshore habitats, including wetlands. We present an annotated checklist of cyclopoid and harpacticoid copepods based on published records and our recent collections in the Great Lakes. We have added 14 species of cyclopoid copepods to the Great Lakes record, increasing the total to 30. Because we probably have accounted for most of the cyclopoid species, we provide a key to the identification of this group. We have added 19 species of harpacticoid copepods to the 15 previously known to the Great Lakes, and suspect that additional species remain to be discovered. In individual lakes, there were approximately as many species of cyclopoids as harpacticoids; the total number of species per lake ranged from 35 to 57. The most speciose genera were Bryocamptus (7), Canthocamptus (5), and Moraria (5) in the Harpacticoida, and Diacyclops (6) and Acanthocyclops (5) in the Cyclopoida. The origin of introduced species, our ability to classify copepod habitat, and the ecological significance of copepods are discussed.

Ohio Biological Survey Bulletin New Series↗
USGS2005

Leaf litter breakdown, microbial respiration and shredder production in metal-polluted streams

1. If species disproportionately influence ecosystem functioning and also differ in their sensitivities to environmental conditions, the selective removal of species by anthropogenic stressors may lead to strong effects on ecosystem processes. We evaluated whether these circumstances held for several Colorado, U.S.A. streams stressed by Zn. 2. Benthic invertebrates and chemistry were sampled in five second-third order streams for 1 year. Study streams differed in dissolved metal concentrations, but were otherwise similar in chemical and physical characteristics. Secondary production of leaf-shredding insects was estimated using the increment summation and size-frequency methods. Leaf litter breakdown rates were estimated by retrieving litter-bags over a 171 day period. Microbial activity on leaf litter was measured in the laboratory using changes in oxygen concentration over a 48 h incubation period. 3. Dissolved Zn concentrations varied eightfold among two reference and three polluted streams. Total secondary production of shredders was negatively associated with metal contamination. Secondary production in reference streams was dominated by Taenionema pallidum. Results of previous studies and the current investigation demonstrate that this shredder is highly sensitive to metals in Colorado headwater streams. Leaf litter breakdown rates were similar between reference streams and declined significantly in the polluted streams. Microbial respiration at the most contaminated site was significantly lower than at reference sites. 4. Our results supported the hypothesis that some shredder species contribute disproportionately to leaf litter breakdown. Furthermore, the functionally dominant taxon was also the most sensitive to metal contamination. We conclude that leaf litter breakdown in our study streams lacked functional redundancy and was therefore highly sensitive to contaminant-induced alterations in community structure. We argue for the necessity of simultaneously measuring community structure and ecosystem function in anthropogenically stressed ecosystems.

Freshwater Biology↗