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Chemical and biological consequences of using carbon dioxide versus acid additions in ocean acidification experiments

Use of different approaches for manipulating seawater chemistry during ocean acidification experiments has confounded comparison of results from various experimental studies. Some of these discrepancies have been attributed to whether addition of acid (such as hydrochloric acid, HCl) or carbon dioxide (CO 2 ) gas has been used to adjust carbonate system parameters. Experimental simulations of carbonate system parameter scenarios for the years 1766, 2007, and 2100 were performed using the carbonate speciation program CO2SYS to demonstrate the variation in seawater chemistry that can result from use of these approaches. Results showed that carbonate system parameters were 3 percent and 8 percent lower than target values in closed-system acid additions, and 1 percent and 5 percent higher in closed-system CO 2 additions for the 2007 and 2100 simulations, respectively. Open-system simulations showed that carbonate system parameters can deviate by up to 52 percent to 70 percent from target values in both acid addition and CO 2 addition experiments. Results from simulations for the year 2100 were applied to empirically derived equations that relate biogenic calcification to carbonate system parameters for calcifying marine organisms including coccolithophores, corals, and foraminifera. Calculated calcification rates for coccolithophores, corals, and foraminifera differed from rates at target conditions by 0.5 percent to 2.5 percent in closed-system CO 2 gas additions, from 0.8 percent to 15 percent in the closed-system acid additions, from 4.8 percent to 94 percent in open-system acid additions, and from 7 percent to 142 percent in open-system CO 2 additions.

Scientific Investigations Report

Limnological data for the major streams in Chester County, Pennsylvania

Limnological data on major streams in Chester County, Pennsylvania are tabulated to provide a base line as to the present stream conditions. As land-use patterns change and further urbanization takes place, it is anticipated that these data will serve as a basis for comparison of conditions in the future. The 13 basins encompass a total drainage area of 1,812 km2 (697 mi2) of the 1,976 km2 (760 mi2) within Chester County. Four of the streams are tributaries to the Schuylkill River and include Pickering, Stony Run, Pigeon, and French Creek. Tributaries to the Delaware River include Darby, Crum, Ridley, Chester, Red Clay, and White Clay Creeks. The Elk Creeks flow into the Chesapeake Bay. The Brandywine is a tributary to the Christiana River, itself a tributary to the Delaware. The Octoraro Creek is a tributary to the Susquehanna River. Chester County, which is located in the Piedmont area of Pennsylvania, is undergoing rapid transition from a rural to suburban condition as the population increases. This basic-data report contains the chemical, physical, and biological information collected for the period fall 1969 through fall 1974. The network of 50 stations is shown in figure 1, which is followed by a listing (table 1) of station numbers and a brief description of station locations. Table 2 shows the physical, chemical, and bacteriological data collected by station and date. Table 3 shows the benthic invertebrate data collected by station and date.

Pennsylvania

A preliminary assessment of mouflon abundance at the Kahuku Unit of Hawaii Volcanoes National Park

Hawaii Volcanoes National Park (HAVO) recently acquired the 115,653 acre Kahuku Ranch unit adjacent to the existing Mauna Loa section of HAVO. Kahuku contains numerous exceptional natural resources including many federally listed threatened and endangered species. An apparently large and growing population of alien mouflon sheep (Ovis gmelini musimon), however, threatens sensitive native plants and forest bird habitats. Population composition and abundance estimates were urgently needed to determine the magnitude of resources required to manage this species and justify costs. We surveyed 32,433 acres from helicopter over 2 days in November 2004 during breeding to determine the abundance and population structure. We estimated that there were more than 2,586 ? 705 (90% CI) mouflon at Kahuku. Overall, group sizes averaged 7.8 and the sex ratio was 1:2.4 rams:ewes, but approximately 44% of the population was concentrated in forested areas near ranching operations where group sizes averaged >15 and the sex ratio was 1:3.9 rams:ewes. The remaining 56% of the population occurred widely dispersed in subalpine shrubland and barren lava flows. Abundance estimates are likely to be conservative because they were not adjusted for detection probability. Ground-based surveys of lambs suggest upper biological limit to annual population increase of 33.1% under existing environmental conditions. Historical information used to calculate population trends indicated the apparent rate of population increase to be 21.1%. In the absence of removals, the population increment for 2004-2005, would be more than 546-856, and the population doubling time with these growth rates is 3-4 years.

Hawai'i

An oilspill risk analysis for the western Gulf of Alaska (Kodiak Island) Outer Continental Shelf lease area

An oilspill risk analysis was conducted to determine relative environmental hazards of developing oil in different regions of the Western Gulf of Alaska Outer Continental Shelf lease area. The study analyzed probability of spill occurrence, likely path of pollutants from spills, and locations in space and time of recreational and biological resources likely to be vulnerable. These results are combined to yield estimates of the overall oilspill risk associated with development of the lease area. While the analysis includes estimates of weathering rates and slick dispersion, the methodology has not yet been developed to analyze the mitigating effects of cleanups which if taken into account would reduce the impact probabilities.

Alaska

Nest-site selection and nest success of an Arctic-breeding passerine, Smith's Longspur, in a changing climate

Despite changes in shrub cover and weather patterns associated with climate change in the Arctic, little is known about the breeding requirements of most passerines tied to northern regions. We investigated the nesting biology and nest habitat characteristics of Smith's Longspurs ( Calcarius pictus ) in 2 study areas in the Brooks Range of Alaska, USA. First, we examined variation in nesting phenology in relation to local temperatures. We then characterized nesting habitat and analyzed nest-site selection for a subset of nests ( n = 86) in comparison with paired random points. Finally, we estimated the daily survival rate of 257 nests found in 2007–2013 with respect to both habitat characteristics and weather variables. Nest initiation was delayed in years with snow events, heavy rain, and freezing temperatures early in the breeding season. Nests were typically found in open, low-shrub tundra, and never among tall shrubs (mean shrub height at nests = 26.8 ± 6.7 cm). We observed weak nest-site selection patterns. Considering the similarity between nest sites and paired random points, coupled with the unique social mating system of Smith's Longspurs, we suggest that habitat selection may occur at the neighborhood scale and not at the nest-site scale. The best approximating model explaining nest survival suggested a positive relationship with the numbers of days above 21°C that an individual nest experienced; there was little support for models containing habitat variables. The daily nest survival rate was high (0.972–0.982) compared with that of most passerines in forested or grassland habitats, but similar to that of passerines nesting on tundra. Considering their high nesting success and ability to delay nest initiation during inclement weather, Smith's Longspurs may be resilient to predicted changes in weather regimes on the breeding grounds. Thus, the greatest threat to breeding Smith's Longspurs associated with climate change may be the loss of low-shrub habitat types, which could significantly change the characteristics of breeding areas.

Alaska

Using Molecular Genetic Markers to Resolve a Subspecies Boundary: The Northern Boundary of the Southwestern Willow Flycatcher in the Four-Corner States

*Executive Summary* The northern boundary of the endangered Southwestern Willow Flycatcher (Empidonax traillii extimus) is currently approximated as running through southern Colorado and Utah, but the exact placement is uncertain because this subspecies shares a border with the more northern and non-endangered E. t. adastus. To help resolve this issue, we evaluated the geographic distribution of mitochondrial and nuclear DNA by sampling breeding sites across the four-corner states (Arizona, Colorado, New Mexico, and Utah). We found that breeding sites clustered into two major groups generally consistent with the currently designated boundary, with the exception of three sites situated along the current boundary. However, delineating a precise boundary that would separate the two subspecies is made difficult because (1) we found evidence for a region of intergradation along the boundary area, suggesting the boundary is not discreet, and (2) the boundary region is sparsely populated, with too few extant breeding populations to precisely locate a boundary. The boundary region encompasses an area where elevation changes markedly over relatively short distances, with low elevation deserts to the south and more mesic, higher elevation habitats to the north. We hypothesized that latitudinal and elevational differences and their concomitant ecological effects could form an ecological barrier that inhibited gene flow between the subspecies, forming the basis for the subspecies boundary. We modeled changes in geographic patterns of genetic markers as a function of latitude and elevation finding significant support for this relationship. The model was brought into a GIS environment to create multiple subspecies boundaries, with the strength of each predicted boundary evaluated on the basis of how much genetic variation it explained. The candidate boundary that accounted for the most genetic variation was situated generally near the currently recognized subspecies boundary, but should be more biologically meaningful because it incorporates the landscape features that may be driving separation of the subspecies. Even so, we caution that using any narrow boundary line as an indicator of subspecies identity could be misleading because biologically the boundary is a region of intergradation rather than a discrete line. Designating, a boundary ultimately becomes a regulatory and management decision based on how much of the genetic variation unique to a subspecies should be protected. We discuss how the results of this study can help guide this decision process by wildlife policy makers.

Open-File Report

Geology, hydrology, and water quality in the vicinity of a Brownfield redevelopment site in East Moline, Illinois

An investigation of the geology, hydrology, and water quality in the vicinity of a Brownfield redevelopment site in East Moline, Illinois, was designed to determine if metals and organic compounds detected in the fill deposits in this area posed a threat to the water resources. The hydrologic features of concern at the site are surface water at a pond and surrounding wetland, the Mississippi River, and an unnamed stream and ground water in the shallow aquifer. The shallow aquifer is composed of saturated fill, sand and gravel, and weathered bedrock. The overall direction of surface- and ground-water flow in the study area is toward the Mississippi River. In the eastern part of the pond and wetland, ground water discharges to surface water. In the western part of the pond and wetland, surface water recharges to ground water. Everyday during the period for which water-level data were available, between 4.7 ' 10-4 and 1.4 ' 10-1 cubic feet of water flowed across a 1 square foot area of aquifer. Variations in values for oxidation-reduction potential and specific conductance may be affected by heterogeneity in the chemical composition of the fill and unconsolidated deposits and the bedrock units. Chemical and biological processes are altering the chemistry of the water in the pond relative to its ground-water source. Concentrations of iron and manganese in water samples appear to be affected by the local geochemical environment in the aquifer. The data do not indicate that contaminants in the fill material are having a substantial adverse affect on surface- or ground-water quality in the study area.

Illinois

Comparisons of Water Quality and Biological Variables from Colorado River Shoreline Habitats in Grand Canyon, Arizona, under Steady and Fluctuating Discharges from Glen Canyon Dam

Glen Canyon Dam operations are known to affect mainstem Colorado River temperature and shoreline habitats for native fish. Options for ameliorating the impacts that operations have on young native fish include changing release volumes and/or changing the daily range of releases. Long-term alterations of operations that may produce a measurable biological response can be costly, particularly if the treatment involves reduced power generation. In September and October 2005, a series of two-week releases occurred that alternated between daily fluctuations that varied by 76 m3 s-1 and steady releases. The purpose of these short-term experiments was to study the effect of daily operations on water quality parameters and biotic constituents (phytoplankton, macroinvertebrates, and fishes) of associated shoreline habitats. Our results indicate that measured biological and physical parameters were, in general, unaffected by flow treatments. However, results should be interpreted cautiously as time within and between treatments was likely insufficient to affect measured parameters. These results lead to the recommendation that studies like this may be more amenable to laboratory experiments first and then applied to a large-scale setting, preferably for longer duration.

Open-File Report

Chemical data for rock, sediment, biological, precipitate, and water samples from abandoned copper mines in Prince William Sound, Alaska

Introduction In the early 20th century, approximately 6 million metric tons of copper ore were mined from numerous deposits located along the shorelines of fjords and islands in Prince William Sound, Alaska. At the Beatson, Ellamar, and Threeman mine sites (fig. 1), rocks containing Fe, Cu, Zn, and Pb sulfide minerals are exposed to chemical weathering in abandoned mine workings and remnant waste piles that extend into the littoral zone. Field investigations in 2003 and 2005 as well as analytical data for rock, sediment, precipitate, water, and biological samples reveal that the oxidation of sulfides at these sites is resulting in the generation of acid mine drainage and the transport of metals into the marine environment (Koski and others, 2008; Stillings and others, 2008). At the Ellamar and Threeman sites, plumes of acidic and metal-enriched water are flowing through beach gravels into the shallow offshore environment. Interstitial water samples collected from beach sediment at Ellamar have low pH levels (to ~3) and high concentrations of metals including iron, copper, zinc, cobalt, lead, and mercury. The abundant precipitation of the iron sulfate mineral jarosite in the Ellamar gravels also signifies a low-pH environment. At the Beatson mine site (the largest copper mine in the region) seeps containing iron-rich microbial precipitates drain into the intertidal zone below mine dumps (Foster and others, 2008). A stream flowing down to the shoreline from underground mine workings at Beatson has near-neutral pH, but elevated levels of zinc, copper, and lead (Stillings and others, 2008). Offshore sediment samples at Beatson are enriched in these metals. Preliminary chemical data for tissue from marine mussels collected near the Ellamar, Threeman, and Beatson sites reveal elevated levels of copper, zinc, and lead compared to tissue in mussels from other locations in Prince William Sound (Koski and others, 2008). Three papers presenting results of this ongoing investigation of sulfide oxidation in Prince William Sound are in press. Koski and others (2008) provide an overview of rock alteration, surface water chemistry, and the distribution of metals at the Ellamar, Threeman, and Beatson mine sites. Based on a 60-day, stream-discharge experiment at Beatson in 2005, Stillings and others (2008) analyze changes in water chemistry during storm events and the flux of metals to the shoreline. Foster and others (2008) investigate the biomass and diversity of microbial communities present in surface waters (streams, seeps, pore waters) using fatty acid methyl ester (FAMES) data and principal component analysis. The publications cited above contain a subset of the total chemical data for rock, sediment, biological, precipitate, and water samples collected from the three mine sites in 2003 and 2005. The purpose of this report is the presentation of complete chemical data sets for all samples collected during the two field periods of fieldwork. Data for a small number of samples collected at two other mines (Schlosser and Fidalgo, fig. 1), visited in 2003, are also included in the tables.

Alaska

Chemical data for rock, sediment, biological, precipitate, and water samples from abandoned copper mines in Prince William Sound, Alaska

In the early 20th century, approximately 6 million metric tons of copper ore were mined from numerous deposits located along the shorelines of fjords and islands in Prince William Sound, Alaska. At the Beatson, Ellamar, and Threeman mine sites (fig. 1), rocks containing Fe, Cu, Zn, and Pb sulfide minerals are exposed to chemical weathering in abandoned mine workings and remnant waste piles that extend into the littoral zone. Field investigations in 2003 and 2005 as well as analytical data for rock, sediment, precipitate, water, and biological samples reveal that the oxidation of sulfides at these sites is resulting in the generation of acid mine drainage and the transport of metals into the marine environment (Koski and others, 2008; Stillings and others, 2008). At the Ellamar and Threeman sites, plumes of acidic and metal-enriched water are flowing through beach gravels into the shallow offshore environment. Interstitial water samples collected from beach sediment at Ellamar have low pH levels (to ~3) and high concentrations of metals including iron, copper, zinc, cobalt, lead, and mercury. The abundant precipitation of the iron sulfate mineral jarosite in the Ellamar gravels also signifies a low-pH environment. At the Beatson mine site (the largest copper mine in the region) seeps containing iron-rich microbial precipitates drain into the intertidal zone below mine dumps (Foster and others, 2008). A stream flowing down to the shoreline from underground mine workings at Beatson has near-neutral pH, but elevated levels of zinc, copper, and lead (Stillings and others, 2008). Offshore sediment samples at Beatson are enriched in these metals. Preliminary chemical data for tissue from marine mussels collected near the Ellamar, Threeman, and Beatson sites reveal elevated levels of copper, zinc, and lead compared to tissue in mussels from other locations in Prince William Sound (Koski and others, 2008). Three papers presenting results of this ongoing investigation of sulfide oxidation in Prince William Sound are in press. Koski and others (2008) provide an overview of rock alteration, surface water chemistry, and the distribution of metals at the Ellamar, Threeman, and Beatson mine sites. Based on a 60-day, stream-discharge experiment at Beatson in 2005, Stillings and others (2008) analyze changes in water chemistry during storm events and the flux of metals to the shoreline. Foster and others (2008) investigate the biomass and diversity of microbial communities present in surface waters (streams, seeps, pore waters) using fatty acid methyl ester (FAMES) data and principal component analysis. The publications cited above contain a subset of the total chemical data for rock, sediment, biological, precipitate, and water samples collected from the three mine sites in 2003 and 2005. The purpose of this report is the presentation of complete chemical data sets for all samples collected during the two field periods of fieldwork. Data for a small number of samples collected at two other mines (Schlosser and Fidalgo, fig. 1), visited in 2003, are also included in the tables.

Alaska

Determination and analysis of bearing capacity of calcarenites off the Florida Keys

A specially designed instrument was used to determine the in situ bearing capacity at 12 sites in the carbonate sand seaward of the Florida Keys. The resulting data set not only represents unique information in such an environment, but also provided an opportunity to determine whether bearing capacity is controlled by any specific property of the calcarenites, or, conversely, whether the bearing-capacity value could be used as an index of a particular substrate characteristic. The in sltu measurements were made in several subenvironments in order to bracket the variability of sediment properties throughout the area. Samples were collected at each bearing-capacity test site and w .ere analyzed for selected geological and geotechnical properties, including texture, grain shapes, and biological constituents. No relationship was found between bearing capacity and any of the analyzed properties of the sediment. Although many salient characteristics of calcarenites exist, at the stress levels used in this study their influence is either masked owing to the complex interaction of properties that leads to a specific bearing-capacity value or, at least in these sediments, is absent.

Open-File Report

Water temperatures in select nearshore environments of the Colorado River in Grand Canyon, Arizona, during the Low Steady Summer Flow experiment of 2000

Water releases from Glen Canyon Dam, Arizona, are the primary determinant of streamflow, sediment transport, water quality, and aquatic and riparian habitat availability in the Colorado River downstream of the dam in Grand Canyon. The presence and operation of the dam have transformed the seasonally warm Colorado River into a consistently cold river because of hypolimnetic, or deep-water, releases from the penstock withdrawal structures on the dam. These releases have substantially altered the thermal regime of the downstream riverine environment. This, in turn, has affected the biota of the river corridor, particularly native and nonnative fish communities and the aquatic food web. In the spring and summer of 2000, a Low Steady Summer Flow experiment was conducted by the U.S. Geological Survey and the Bureau of Reclamation to evaluate the effects of the experimental flow on physical and biological resources of the Colorado River ecosystem downstream from Glen Canyon Dam to Lake Mead on the Arizona-Nevada border. This report describes the water temperatures collected during the experimental flow from 14 nearshore sites in the river corridor in Grand Canyon to assess the effects of steady releases on the thermal dynamics of nearshore environments. These nearshore areas are characterized by low-velocity flows with some degree of isolation from the higher velocity flows in the main channel and are hypothesized to be important rearing environments for young native fish. Water-temperature measurements were made at 14 sites, ranging from backwater to open-channel environments. Warming during daylight hours, relative to main-channel temperatures, was measured at all sites in relation to the amount of isolation from the main-channel current. Boat traffic, amount of direct solar radiation, and degree of isolation from the main-channel current appear to be the primary factors affecting the differential warming of the nearshore environment.

Arizona

EverVIEW: a visualization platform for hydrologic and Earth science gridded data

The EverVIEW Data Viewer is a cross-platform desktop application that combines and builds upon multiple open source libraries to help users to explore spatially-explicit gridded data stored in Network Common Data Form (NetCDF). Datasets are displayed across multiple side-by-side geographic or tabular displays, showing colorized overlays on an Earth globe or grid cell values, respectively. Time-series datasets can be animated to see how water surface elevation changes through time or how habitat suitability for a particular species might change over time under a given scenario. Initially targeted toward Florida's Everglades restoration planning, EverVIEW has been flexible enough to address the varied needs of large-scale planning beyond Florida, and is currently being used in biological planning efforts nationally and internationally.

Computers & Geosciences

The snag’s the limit: Habitat selection modeling for the western purple martin in a managed forest landscape

The western purple martin ( Progne subis arboricola ), an avian insectivore, is a species of conservation concern throughout the Pacific Northwest. Compared to the well-studied eastern subspecies ( Progne subis subis ), little is known of the life history and biology of the western subspecies. Availability of breeding habitat is believed to be a major limiting factor for western purple martins in forested habitat, but fundamental information on their current distribution and selection of nesting habitat is deficient. To fill this gap, we compared habitat characteristics at three spatial scales (snag-level, stand-level [48.6 ha], landscape-level [314 ha]) surrounding nest snags occupied by purple martins in western Oregon to unoccupied sites. We found habitat for nesting purple martins was defined by the presence of moderately decayed snags with nest cavities, located well away from closed-canopy forest in sufficiently large (>15 ha) open areas. Our modeling efforts suggested suitable habitat was rare within the study region because: 1) snags were scarce on private industrial forest lands and 2) large disturbed patches were uncommon on federal lands. We conclude that a disturbance regime characterized by infrequent but major stand-replacing events, such as fire or timber harvest, is likely the key to maintaining breeding habitat for purple martins in upland forests in western Oregon.

Oregon

Soil organic carbon on lands of the Department of the Interior

The stocks of soil organic carbon (SOC) on the landscape are an important element in the global carbon cycle. Changes in soil carbon can change the concentrations of greenhouse gases in the atmosphere. If carbon dioxide from the atmosphere, captured through photosynthesis, is ultimately stored in the soil to an enhanced degree, the resulting soil carbon sequestration may help delay some of the undesirable consequences of global warming. If the conditions affecting the balance of photosynthesis and decomposition are changed to favor decomposition, then soil carbon can be released to the atmosphere as carbon dioxide or methane, contributing to greenhouse warming. The Department of the Interior (DOI) is the largest land management agency in the United States, with jurisdiction influencing more than 2 million square kilometers of land--about 22 percent of the total land area of the country. Estimates using available data indicate that the DOI lands have nearly 18 petagrams (Pg; 1 Pg = 1015 g = 1 gigaton) of SOC, which is about 22 percent of the estimate for the country (81 Pg). The distribution is not uniform, and few areas of DOI lands reflect “average” conditions. Large areas of land with low biological productivity occur in the conterminous U.S. part of the DOI lands, and substantial areas with high SOC occur in Alaska. About 74 percent of the SOC on DOI lands is in Alaska. Details on amounts of SOC by DOI Bureau and location are shown in a series of tables and maps. For the conterminous United States, statistics are given by land cover type and soil depth ranges.

Open-File Report

Permeability of roads to movement of scrubland lizards and small mammals

A primary objective of road ecology is to understand and predict how roads affect connectivity of wildlife populations. Road avoidance behavior can fragment populations, whereas lack of road avoidance can result in high mortality due to wildlife-vehicle collisions. Many small animal species focus their activities to particular microhabitats within their larger habitat. We sought to assess how different types of roads affect the movement of small vertebrates and to explore whether responses to roads may be predictable on the basis of animal life history or microhabitat preferences preferences. We tracked the movements of fluorescently marked animals at 24 sites distributed among 3 road types: low-use dirt, low-use secondary paved, and rural 2-lane highway. Most data we collected were on the San Diego pocket mouse ( Chaetodipus fallax ), cactus mouse ( Peromyscus eremicus ), western fence lizard ( Sceloporus occidentalis ), orange-throated whiptail ( Aspidoscelis hyperythra ), Dulzura kangaroo rat ( Dipodomys simulans ) (dirt, secondary paved), and deer mouse (Peromyscus maniculatus) (highway only). San Diego pocket mice and cactus mice moved onto dirt roads but not onto a low-use paved road of similar width or onto the highway, indicating they avoidpaved road substrate. Both lizard species moved onto the dirt and secondary paved roads but avoided the rural 2-lane rural highway, indicating they may avoid noise, vibration, or visual disturbance from a steady flow of traffic. Kangaroo rats did not avoid the dirt or secondary paved roads. Overall, dirt and secondary roads were more permeable to species that prefer to forage or bask in open areas of their habitat, rather than under the cover of rocks or shrubs. However, all study species avoided the rural 2-lane highway. Our results suggest that microhabitat use preferences and road substrate help predict species responses to low-use roads,but roads with heavy traffic may deter movement of a much wider range of small animal species.

California

Vegetation cover, tidal amplitude and land area predict short-term marsh vulnerability in Coastal Louisiana

The loss of coastal marshes is a topic of great concern, because these habitats provide tangible ecosystem services and are at risk from sea-level rise and human activities. In recent years, significant effort has gone into understanding and modeling the relationships between the biological and physical factors that contribute to marsh stability. Simulation-based process models suggest that marsh stability is the product of a complex feedback between sediment supply, flooding regime and vegetation response, resulting in elevation gains sufficient to match the combination of relative sea-level rise and losses from erosion. However, there have been few direct, empirical tests of these models, because long-term datasets that have captured sufficient numbers of marsh loss events in the context of a rigorous monitoring program are rare. We use a multi-year data set collected by the Coastwide Reference Monitoring System (CRMS) that includes transitions of monitored vegetation plots to open water to build and test a predictive model of near-term marsh vulnerability. We found that despite the conclusions of previous process models, elevation change had no ability to predict the transition of vegetated marsh to open water. However, we found that the processes that drive elevation change were significant predictors of transitions. Specifically, vegetation cover in prior year, land area in the surrounding 1 km2 (an estimate of marsh fragmentation), and the interaction of tidal amplitude and position in tidal frame were all significant factors predicting marsh loss. This suggests that 1) elevation change is likely better a predictor of marsh loss at time scales longer than we consider in this study and 2) the significant predictive factors affect marsh vulnerability through pathways other than elevation change, such as resistance to erosion. In addition, we found that, while sensitivity of marsh vulnerability to the predictive factors varied spatially across coastal Louisiana, vegetation cover in prior year was the best single predictor of subsequent loss in most sites followed by changes in percent land and tidal amplitude. The model’s predicted land loss rates correlated well with land loss rates derived from satellite data, although agreement was spatially variable. These results indicate 1) monitoring the loss of small scale vegetation plots can inform patterns of land loss at larger scales 2) the drivers of land loss vary spatially across coastal Louisiana, and 3) relatively simple models have potential as highly informative tools for bioassessment, directing future research, and management planning.

Louisiana

Conservation, biodiversity and infectious disease: scientific evidence and policy implications

Habitat destruction and infectious disease are dual threats to nature and people. The potential to simultaneously advance conservation and human health has attracted considerable scientific and popular interest; in particular, many authors have justified conservation action by pointing out potential public health benefits . One major focus of this debate—that biodiversity conservation often decreases infectious disease transmission via the dilution effect—remains contentious. Studies that test for a dilution effect often find a negative association between a diversity metric and a disease risk metric, but how such associations should inform conservation policy remains unclear for several reasons. For one, diversity and infection risk have many definitions, making it possible to identify measures that conform to expectations. Furthermore, the premise that habitat destruction consistently reduces biodiversity is in question, and disturbance or conservation can affect disease in many ways other than through biodiversity change. To date, few studies have examined the broader set of mechanisms by which anthropogenic disturbance or conservation might increase or decrease infectious disease risk to human populations. Due to interconnections between biodiversity change, economics and human behaviour, moving from ecological theory to policy action requires understanding how social and economic factors affect conservation. This Theme Issue arose from a meeting aimed at synthesizing current theory and data on ‘biodiversity, conservation and infectious disease’ (4–6 May 2015). Ecologists, evolutionary biologists, economists, epidemiologists, veterinary scientists, public health professionals, and conservation biologists from around the world discussed the latest research on the ecological and socio-economic links between conservation, biodiversity and infectious disease, and the open questions and controversies in these areas. By combining ecological understanding with insights from the social and economic sciences, the papers in this Theme Issue address the complex relationships, patterns and ecological mechanisms that influence conservation, infectious disease, and the policy options available to protect nature and human health.

Philosophical Transactions of the Royal Society B: