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Metaproteomics and metagenomics reveal microbial pathways of organic matter degradation and methanogenesis in a marginally producing natural gas well

The expansion of natural gas production and utilization worldwide has led to the decline of many once-productive wells, eventually resulting in costly well-plugging and unused infrastructure. However, in areas like the Michigan basin, MI, where the majority of natural gas is biogenically produced, microbial communities could potentially be stimulated to generate additional methane, increasing gas supply and reducing the need to drill new wells. In this study, we performed metaproteomic, metagenomic, and geochemical analyses of Antrim Shale formation water from a marginally producing natural gas well to evaluate resident microbial community functions in the context of potential bioenergy production. Functional proteins involved in methanogenesis, degradation/catabolism (including organic matter degradation), biosynthesis, energy utilization, transmembrane transport, and stress response were among the most commonly identified groups. Three metagenome-assembled genomes (MAGs) were characterized, including Methanomicrobiaceae, Methanothrix , and Smithella . For each, the identified proteins involved in methanogenesis and the degradation of diverse organic compounds, strongly suggest their role in utilizing shale-derived organic matter. These findings provide an increased understanding of the microorganisms and their metabolisms generating natural gas in the Antrim Shale and establish a foundation for future stimulation efforts aimed at enhancing biogenic methane production in marginal gas wells.

Michigan

Development of a hydrogeologic visualization model for western Sarpy County, Nebraska

Population in western Sarpy County, Nebraska, has steadily increased over the last several decades and has led to increased groundwater use for domestic purposes. To meet the increase in demand, the Papio-Missouri River Natural Resources District is seeking to use all available sources of groundwater in western Sarpy County. Additionally, elevated groundwater nitrate plus nitrite as nitrogen concentrations were detected, indicating the need to better understand the groundwater quality of the area. Although the general geology of the area is understood, the area does not have detailed information on the extent of the various aquifers, particularly the Dakota aquifer. To characterize these aquifers, the Papio-Missouri River Natural Resources District invested in airborne electromagnetic surveys of the area to better understand the subsurface geology. Although these surveys improved understanding of the groundwater systems in the area, the Papio-Missouri River Natural Resources District wanted to integrate the subsurface information with available water-quality and groundwater-level data. In response, the U.S. Geological Survey, in cooperation with the Papio-Missouri River Natural Resources District, the Nebraska Natural Resources Commission, and the Nebraska Department of Natural Resources, assembled geologic, hydrogeologic and nitrate plus nitrite as nitrogen information for the selected area into a three-dimensional visualization computer software package called GeoScene3D. The completed GeoScene3D project was assembled to provide a visualization of the groundwater systems and associated water-quality results in Sarpy County and to provide the Papio-Missouri River Natural Resources District managers with information that can be used to make more informed groundwater resource-planning decisions in the future. This report details the development of a three-dimensional model created within GeoScene3D to visualize the subsurface, particularly the Dakota Sandstone in western Sarpy County.

Nebraska

Biogeochemical and community ecology responses to the wetting of non-perennial streams

Transitions between dry and wet hydrologic states are the defining characteristic of non-perennial rivers and streams, which constitute the majority of the global river network. Although past work has focused on stream drying characteristics, there has been less focus on how hydrology, ecology and biogeochemistry respond and interact during stream wetting. Wetting mechanisms are highly variable and can range from dramatic floods and debris flows to gradual saturation by upwelling groundwater. This variation in wetting affects ecological and biogeochemical functions, including nutrient processing, sediment transport and the assembly of biotic communities. Here we synthesize evidence describing the hydrological mechanisms underpinning different types of wetting regimes, the associated biogeochemical and organismal responses, and the potential scientific and management implications for downstream ecosystems. This combined multidisciplinary understanding of wetting dynamics in non-perennial streams will be key to predicting and managing for the effects of climate change on non-perennial ecosystems.

Nature Water

Using stable oxygen isotope dual-inlet isotope-ratio mass spectrometry to elucidate uranium transport and mixed 230Th/U calcite formation ages at the seminal Devils Hole, Nevada, natural laboratory

Rationale Vein calcite in Devils Hole has been precipitating continuously in oxygen-isotope equilibrium at a constant temperature for over 500 000 years, providing an unmatched δ 18 O paleoclimate time series. A substantial issue is that coeval calcite (based on matching δ 18 O values) has uranium-series ages differing by 12 000 years. Methods An unparalleled high-accuracy δ 18 O chronology series from continuously submerged calcite was used to correct the published uranium-series ages of non-continuously formed calcite in two cores, cyclically exposed by water-table decline during glacial–interglacial transitions. This method relies on the premise that the δ 18 O values of coevally precipitated calcite are identical, allowing matching calcite δ 18 O values to establish formation ages. Results Exposed calcite can have apparent ages that are 12 000 years too young due to unrecognized uranium mobility and resulting mixed ages identified in over 50 mixed uranium-series ages from previous studies. Secondary uranium in fluids, sourced from the formation or dissolution of porous carbonate deposits (folia) with high uranium-238 ( 238 U) concentrations, has migrated up to 10 mm into vein calcite. Conclusions The continuously submerged Devils Hole δ 18 O chronology is not explained by orbital forcing. Rather, this chronology represents a regional climate record in the southern Great Basin of sea-surface-temperature (SST) variations off California, variations that preceded the last and penultimate deglaciations by 5000 to approximately 10 000 years. Temporal discrepancies between the continuously submerged Devils Hole chronology and other regional δ 18 O records (e.g., the Leviathan chronology) can be explained by unrecognized cryptic, pernicious uranium mobility, leading to model estimations that may be thousands of years younger than actual ages. Consequently, paleo-moisture availability, water-table, and groundwater recharge models based on these mixed uranium-series ages are too young by as much as 12 000 years. The potential for post-formation uranium addition in subaerial cores and speleothems underscores the need for caution in uranium-series dating, highlighting δ 18 O time-series comparisons as a method for identifying mixed ages.

Nevada

Participatory engagement to reduce communication gaps

Underserved communities, especially those in coastal areas in Puerto Rico, face significant threats from natural hazards such as hurricanes and rising sea levels. Limited funding hinders the investment in costly mitigation measures, increasing exposure to natural disasters. Providing coastal resources and data products through effective communication mechanisms is fundamental to improving the well-being of these underserved coastal communities. The overall objectives of the pilot effort to engage and connect with underserved coastal communities in Puerto Rico were the following: (1) compile a comprehensive database of the projects and resources relevant to natural hazards in Puerto Rico; (2) foster connections with Puerto Rican interested parties to better understand their priorities regarding coastal hazards and provide them with pertinent U.S. Geological Survey (USGS) resources; and (3) identify knowledge gaps to guide future USGS projects in Puerto Rico. Here we outline our participatory engagement framework and process, along with two specific resources developed with the information collected from this effort. These resources are available in English and Spanish and consist of user-friendly, non-technical information products. Among them are: (1) a website where users can learn about USGS research on landslides, hurricanes, earthquakes, water resources, coastal hazards, tsunamis, and ecosystem hazards and environmental contaminants, and (2) a geonarrative highlighting shoreline changes in Puerto Rico with sections on historical shoreline trends, hurricane impacts, and potential solutions that could help protect communities and mitigate coastal hazards. Continuing participatory engagement in future projects could enhance the accessibility and usability of natural hazards resources within the community.

San Juan

The saline groundwater legacy of a large buried coastal paleo-estuary

Elevated groundwater salinity in coastal regions threatens the beneficial use of fresh groundwater. Coastal groundwater management typically focuses on preventing intrusion from modern sources of seawater; however, past geological processes can also leave a legacy of saline groundwater now hidden in the subsurface. Here, multiple extensive airborne electromagnetic surveys provide detailed evidence of residual salinity from a paleo-estuary filling a late Pleistocene incised valley impacting more than 10,000 km 2 that is now hidden beneath coastal Louisiana’s deltaic plain. Our results show that the three-dimensional pattern of saline groundwater beneath Louisiana mimics that of near-surface aquifers surrounding the modern Delaware Bay estuary, fingerprinting the signature of the past drowning of a large, incised valley of the Mississippi River following post-glacial sea-level rise. These findings demonstrate a new framework for understanding legacy sources of saltwater critical for managing stressed water resources along global coastlines.

Louisiana

Characterizing the scale of regional landslide triggering from storm hydrometeorology

Rainfall strongly affects landslide triggering; however, understanding how storm characteristics relate to the severity of landslides at the regional scale has thus far remained unclear, despite the societal benefits that would result from defining this relationship. As mapped landslide inventories typically cover a small region relative to a storm system, here we develop a dimensionless index for landslide-inducing rainfall, A * , based on extremes of modeled soil water relative to its local climatology. We calibrate A * using four landslide inventories, comprising over 11 000 individual landslides over four unique storm events, and find that a common threshold can be applied to estimate regional shallow-landslide-triggering potential across diverse climatic regimes in California (USA). We then use the spatial distribution of A * , along with topography, to calculate the landslide potential area (LPA) for nine landslide-inducing storm events over the past 20 years, and we test whether atmospheric metrics describing the strength of landfalling storms, such as integrated water vapor transport, correlate with the magnitude of hazardous landslide-inducing rainfall. We find that although the events with the largest LPA do occur during exceptional atmospheric river (AR) storms, the strength of landfalling atmospheric rivers does not scale neatly with landslide potential area, and even exceptionally strong ARs may yield minimal landslide impacts. Other factors, such as antecedent soil moisture driven by storm frequency and mesoscale precipitation features within storms, are instead more likely to dictate the patterns of landslide-generating rainfall throughout the state.

California

Restoring dryland water cycles for precipitation feedback and climate stability; a review

Drylands across the globe are experiencing intensifying water scarcity, land degradation, and hydroclimatic extremes. This review integrates evidence from multidecadal field studies, hydrologic monitoring, geomorphic and ecological assessments, remote sensing, and land–atmosphere science to evaluate how restoration influences key components of the terrestrial water cycle. Low-tech natural infrastructure in dryland streams (NIDS)—including check dams, leaky weirs, one-rock dams, and gabions—has emerged as a promising but under-synthesized nature-based solution for restoring hydrologic function in these environments. We describe the mechanisms through which these interventions modify runoff detention, infiltration, sediment and alluvial storage, shallow-groundwater recharge, vegetation recovery, and surface-energy partitioning, and we summarize outcomes across diverse dryland settings. Findings consistently show increased water residence time, enhanced soil-moisture storage, expanded riparian vegetation, extended flow duration, and shifts toward greater latent-heat flux—producing localized cooling and strengthened ecohydrological feedbacks. Building on these localized effects, we articulate a hypothesis that links the spatial extent of restoration, the density of NIDS per unit drainage area, and the magnitude of the latent-to-sensible-heat contrast generated by wetter post-rainfall conditions. Specifically, we hypothesize that when NIDS are implemented at densities permitted by topography and across areas large enough to maintain elevated soil moisture after storm events, the resulting increases in latent heat flux, surface cooling, and boundary-layer moistening may enhance moisture convergence and boundary-layer development, potentially increasing the likelihood or stability of convective precipitation, analogous to how reductions in these processes have contributed to regional drought intensification. These land–atmosphere feedbacks remain untested at scale but represent an important research Frontier. By integrating hydrologic, geomorphic, ecological, and atmospheric perspectives, this review provides a comprehensive framework for considering how low-tech, landscape-scale interventions can strengthen watershed resilience and contribute to climate-relevant nature-based solutions.

Arizona

Assessing potential effects of oil and gas development activities on groundwater quality near and overlying the Elk Hills and North Coles Levee Oil Fields, San Joaquin Valley, California

Groundwater resources are utilized near areas of intensive oil and gas development in California’s San Joaquin Valley. In this study, we examined chemical and isotopic data to assess if thermogenic gas or saline water from oil producing formations have mixed with groundwater near the Elk Hills and North Coles Levee Oil Fields in the southwestern San Joaquin Valley. Major ion concentrations and stable isotope compositions were largely consistent with natural processes, including mixing of different recharge sources and water-rock interactions. Trace methane concentrations likely resulted from microbial rather than thermogenic sources. Trace concentrations of benzene and other dissolved hydrocarbons in three wells had uncertain sources that could occur naturally or be derived from oil and gas development activities or other anthropogenic sources. In the mid-1990s, two industrial supply wells had increasing Cl and B concentrations likely explained by mixing with up to 15 percent saline oil-field water injected for disposal in nearby injection disposal wells. Shallow groundwater along the western margin of Buena Vista Lake Bed had elevated Cl, B, and SO 4 concentrations that could be explained by accumulation of salts during natural wetting and drying cycles or, alternatively, legacy surface disposal of saline oil-field water in upgradient ephemeral drainages. This study showed that groundwater had relatively little evidence of thermogenic gas or saline water from oil and gas sources in most parts of the study area. However, the evidence for groundwater mixing with injected disposal water, and possibly legacy surface disposal water, demonstrates produced water management practices as a potential risk factor for groundwater-quality degradation near oil and gas fields. Additional studies in the San Joaquin Valley and elsewhere could improve understanding of such risks by assessing the locations, volumes, and types of produced water disposal practices used during the life of oil fields.

California

Potential climate and human water-use effects on water-quality trends in a semiarid, western U.S. watershed: Fountain Creek, Colorado, USA

Nutrients, total dissolved solids (TDS), and trace elements affect the suitability of water for human and natural needs. Here, trends in such water-quality constituents are analyzed for 1999–2022 for eight nested monitoring sites in the 24,000 km 2 Fountain Creek watershed in Colorado, USA, by using the weighted regressions on time, discharge, and season (WRTDS) methodology. Fountain Creek shares characteristics with other western U.S. watersheds: (1) an expanding but more water-efficient population, (2) a heavy reliance on imported water, (3) a semiarid climate trending towards warmer and drier conditions, and (4) shifts of water from agricultural to municipal uses. The WRTDS analysis found both upward and downward trends in the concentrations of nutrients that reflected possible shifts in effluent management, instream uptake, and water conservation by a watershed population that grew by about 40%. Selenium, other trace elements, and TDS can pose water-quality challenges downstream and their concentrations were found to have a downwards trend. Those trends could be driven by either a warming and drying of the local climate or decreased agricultural irrigation, as both would reduce recharge and subsequent mobilization from natural geologic sources via groundwater discharge. The patterns illustrate how changes in climate and water use may have affected water quality in Fountain Creek and demonstrate the patterns to look for in other western watersheds.

Colorado

Guidelines for collection and field analysis of ground-water samples for selected unstable constituents

The unstable nature of many chemical and physical constituents in ground water requires special collection procedures and field analysis immediately after collection. This report describes the techniques and equipment commonly used in the collection and field analysis of samples for pH, temperature, carbonate, bicarbonate, specific conductance, Eh, and dissolved oxygen.

Open-File Report

Controls on natural hydrogen generation during serpentinization of mantle rocks

Mantle rocks undergoing serpentinization can generate significant amounts of natural hydrogen, yet the rates and controlling processes remain poorly understood. Here, we constrain the possible hydrogen generation rates in two distinct mantle rock types, the fertile lherzolites of the Western Pyrenees and the depleted harzburgites of Northern California, to relatively low rates of ~0.1 to ~0.5 tonnes H₂ yr⁻¹ km⁻³ of reactive rock. When integrated over the full reactive volumes, this corresponds to total production rates of ~300 to ~600 tonnes H₂ yr⁻¹. By combining three-dimensional geophysical inversion with numerical modelling of fluid-rock processes, we show that hydrogen generation rates are mainly limited by H₂ saturation in the fluid and reaction kinetics. Under these constraints, hydrogen generation in mantle-derived serpentinization systems proceeds slowly, making rapid large-scale replenishment unlikely and suggesting that large, economically relevant accumulations, would require timescales of thousands to tens of thousands of years to develop.

northern California, western Pyrenees

Distinguishing natural sources from anthropogenic events in seismic data

As seismic data are increasingly used to investigate a diverse range of subsurface phenomena beyond regular fast-rupturing earthquakes (Peng and Gomberg, 2010; Beroza and Ide, 2011), it is important to acknowledge that human-generated ground vibrations may be mistaken for naturally generated subsurface processes (Larose et al., 2015; Li et al., 2018). Correct discrimination of natural processes from anthropogenic noise is especially pressing given the trend in seismic detection research toward automated algorithms and machine learning methods (Yoon et al., 2015; Kong et al., 2019;Mousavi and Beroza, 2022) and the growth in seismic data collection in new environments such as urban and industry settings (e.g., Díaz et al.,2017).

Seismological Research Letters

Factors influencing landslide occurrence in low-relief formerly glaciated landscapes: Landslide inventory and susceptibility analysis in Minnesota, USA

In landscapes recently impacted by continental glaciation, landslides may occur where topographic relief has been generated by the drainage of glacial lakes and ensuing post-glacial fluvial network development into unconsolidated glacially derived sediments and exhumed bedrock. To investigate linkages among environmental variables, post-glacial landscape development, and landslides, we created a landslide inventory of nearly 10,000 landslides in five regions of the formerly glaciated low-relief state of Minnesota, USA. Multivariate logistic regression indicates the importance of slope angle, lithology, and the development of stream valleys to landslide distribution. Areas underlain by fine-grained glaciolacustrine and nearshore deposits that are incised by streams are particularly prone to shallow (<1-2 m depth) landslides. Landslides also occur in a wide range of glacial and fluvial deposits, and as rockfall in layered Paleozoic sedimentary rocks in central and southern Minnesota and Precambrian igneous and sedimentary rocks in northeastern Minnesota. Although no more than 1-2% of the studied regions are susceptible to landslides, they can pose risk to life and safety, damage infrastructure, and impact water quality. The combination of recently generated low-relief steep slopes, extensive unconsolidated sediments, and layered sedimentary bedrock make this formerly glaciated landscape more susceptible to landslides than current national-scale models indicate.

Minnesota

Beaver dam analogs as nature-based solutions to mitigate snowpack loss in northern New Mexico

Reductions in snow have left many streams in northern New Mexico dry or with very low flows during the summer. Base flow, defined as the contribution of groundwater to streamflow, can sustain streamflow during the summer and during drought conditions. Beaver dam analogs can be used to “slow the flow,” or increase the infiltration of rain-based runoff to replenish shallow groundwater reservoirs and increase base flow and potentially increase summertime streamflow.

New Mexico