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At least 37 records · Page 2Linked to original sources

Expansion of intertidal mussel beds following disease-driven reduction of a keystone predator

Disease shapes community composition by removing species with strong interactions. To test whether the absence of keystone predation due to disease produced changes to the species composition of rocky intertidal communities, we leverage a natural experiment involving mass mortality of the keystone predator Pisaster ochraceus from Sea Star Wasting Syndrome. Over four years, we measured dimensions of mussel beds, sizes of Mytilus californianus, mussel recruitment, and species composition on vertical rock walls at six rocky intertidal sites on the central California coast. We also assessed the relationship between changes in mussel cover and changes in sea star density across 33 sites along the North American Pacific coast using data from long-term monitoring. After four years, the lower boundary of the central California mussel beds shifted downward toward the water 18.7 ± 15.8 cm (SD) on the rock and 11.7 ± 11.0 cm in elevation, while the upper boundary remained unchanged. In central California, downward expansion and total area of the mussel bed were positively correlated with mussel recruitment but were not correlated with pre-disease sea star density or biomass. At a multi-region scale, changes in mussel percent cover were positively correlated with pre-disease sea star densities but not change in densities. Species composition of primary substrate holders and epibionts below the mussel bed remained similar across years. Extirpation of the community below the bed did not occur. Instead, this community became limited to a smaller spatial extent while the mussel bed expanded.

California, Oregon↗

Persistence of oiling in mussel beds after the Exxon Valdez oil spill

Persistence and weathering of Exxon Valdez oil in intertidal mussel ( Mytilus trossulus ) beds in Prince William Sound (PWS) and along the Gulf of Alaska was monitored from 1992 to 1995. Beds with significant contamination included most previously oiled areas in PWS, particularly within the Knight Island group and the Kenai Peninsula. In sediments, yearly mean concentrations of total petroleum hydrocarbons ranged from <60 μg/g in reference beds to 62,258 μg/g wet wt., or approximately 0 to 523 μg/g dry wt. total polynuclear aromatic hydrocarbons (TPAHs). In mussels, mean TPAH concentrations ranged up to 8.1 μg/g dry wt. Hydrocarbon concentrations declined significantly with time in some, but not all mussels and sediments, and should reach background levels within three decades of the spill in most beds. In 1995, mean hydrocarbon concentration was greater than twice background concentration in sediments from 27 of 34 sites, and in mussels from 18 of 31 sites.

Alaska↗

Geomorphology, acoustic backscatter, and processes in Santa Monica Bay from multibeam mapping

Santa Monica Bay was mapped in 1996 using a high-resolution multibeam system, providing the first substantial update of the submarine geomorphology since the initial compilation by Shepard and Emery [(1941) Geol. Soc. Amer. Spec. Paper 31]. The multibeam mapping generated not only high-resolution bathymetry, but also coregistered, calibrated acoustic backscatter at 95 kHz. The geomorphology has been subdivided into six provinces; shelf, marginal plateau, submarine canyon, basin slope, apron, and basin. The dimensions, gradients, and backscatter characteristics of each province is described and related to a combination of tectonics, climate, sea level, and sediment supply. Fluctuations of eustatic sea level have had a profound effect on the area; by periodically eroding the surface of Santa Monica plateau, extending the mouth of the Los Angeles River to various locations along the shelf break, and by connecting submarine canyons to rivers. A wetter glacial climate undoubtedly generated more sediment to the rivers that then transported the increased sediment load to the low-stand coastline and canyon heads. The trends of Santa Monica Canyon and several bathymetric highs suggest a complex tectonic stress field that has controlled the various segments. There is no geomorphic evidence to suggest Redondo Canyon is fault controlled. The San Pedro fault can be extended more than 30 km to the northwest by the alignment of a series of bathymetric highs and abrupt changes in direction of channel thalwegs.

California↗

Characterizing benthic substrates of Santa Monica Bay with seafloor photography and multibeam sonar imagery

Seafloor photography from three cruises is combined with multibeam sonar imagery to characterize benthic substrates and associated fauna of Santa Monica Bay, California. The multibeam EM1000 imagery was collected in 1996. Two sampling cruises (in 1998 and 1999) provided photographs at 142 sites throughout the Bay; a final cruise (in 2000) collected still photographs and continuous video along nine transects on the mainland shelf from Pt. Dume to the Palos Verdes peninsula. Muddy substrates (typically low backscatter) were the predominant habitat throughout the Santa Monica Bay, from the 20 m isobath to the adjacent Santa Monica basin floor (780 m). Bioturbation was pervasive as evidenced by abundant open burrows, mounds, and faunal tracks and trails. Sandy substrates (typically intermediate to high backscatter) were restricted to the innermost mainland shelf and a narrow outer shelf band north of Santa Monica Canyon. Cobble and gravel substrates (high backscatter) were restricted to the innermost shelf south of El Segundo and limited parts of the shelf edge. Rocky substrates (high backscatter) with interspersed patches of sand and gravel occurred on the high-relief marginal plateau and along parts of the shelf break offshore of Malibu.

California↗

Clay-mineral suites, sources, and inferred dispersal routes: Southern California continental shelf

Clay mineralogy is useful in determining the distribution, sources, and dispersal routes of fine-grained sediments. In addition, clay minerals, especially smectite, may control the degree to which contaminants are adsorbed by the sediment. We analyzed 250 shelf sediment samples, 24 river-suspended-sediment samples, and 12 river-bed samples for clay-mineral contents in the Southern California Borderland from Point Conception to the Mexico border. In addition, six samples were analyzed from the Palos Verdes Headland in order to characterize the clay minerals contributed to the offshore from that point source. The <2 ??m-size fraction was isolated, Mg-saturated, and glycolated before analysis by X-ray diffraction. Semi-quantitative percentages of smectite, illite, and kaolinite plus chlorite were calculated using peak areas and standard weighting factors. Most fine-grained sediment is supplied to the shelf by rivers during major winter storms, especially during El Nin??o years. The largest sediment fluxes to the region are from the Santa Ynez and Santa Clara Rivers, which drain the Transverse Ranges. The mean clay-mineral suite for the entire shelf sediment data set (26% smectite, 50% illite, 24% kaolinite+chlorite) is closely comparable to that for the mean of all the rivers (31% smectite, 49% illite, 20% kaolinite+chlorite), indicating that the main source of shelf fine-grained sediments is the adjacent rivers. However, regional variations do exist and the shelf is divided into four provinces with characteristic clay-mineral suites. The means of the clay-mineral suites of the two southernmost provinces are within analytical error of the mineral suites of adjacent rivers. The next province to the north includes Santa Monica Bay and has a suite of clay minerals derived from mixing of fine-grained sediments from several sources, both from the north and south. The northernmost province clay-mineral suite matches moderately well that of the adjacent rivers, but does indicate some mixing from sources in adjacent provinces.

Marine Environmental Research↗

Observations of large-amplitude cross-shore internal bores near the shelf break, Santa Monica Bay, CA

Two sets of moorings were deployed along a cross-shelf transect in central Santa Monica bay for four months in the winter of 1998-1999. Both sites had an array of instruments attached to tripods set on the seafloor to monitor currents over the entire water column, surface waves, near-bed temperature, water clarity and suspended sediment. A companion mooring had temperature sensors spaced approximately 10 m apart to measure temperature profiles between the surface and the seafloor. One array was deployed in 70 m of water at a site adjacent to the shelf break, just northwest of a major ocean outfall. The other was deployed on the mid shelf in 35 m of water approximately 6 km from the shelf break site. The subtidal currents in the region flowed parallel to the isobaths with fluctuating time scales around 10 days, a typical coastal-ocean pattern. However, during the falling phase of the barotropic spring tide, sets of large-amplitude, sheared cross-shore current pulses with a duration of 2-5 h were observed at the shelf break site. Currents in these pulses flowed exclusively offshore in a thin layer near the bed with amplitudes reaching 30-40 cm/s. Simultaneously, currents with amplitudes around 15-20 cm/s flowed exclusively onshore in the thicker layer between the offshore flow layer and the sea surface. The net offshore transport was about half the onshore transport. Near-surface isotherms were depressed 30-40 m. These pulses were likely internal bores generated by tidal currents. Bed stresses associated with these events exceeded 3 dynes/cm2. These amplitudes are large enough to resuspend and transport not only fine-grained material, but also medium to coarse sands from the shelf toward the slope. Consequently, the seafloor over the shelf break was swept clear of fine sediments. The data suggest that the internal bores dissipate and are reduced in amplitude as they propagate across this relatively narrow shelf. There is evidence that they reach the 35 m site, but other coastal ocean processes obscure their distinctive characteristics.

Marine Environmental Research↗

Magnitude and variability of Holocene sediment accumulation in Santa Monica Bay, California

The spatial variability of Holocene (past 10,000 years) sediment accumulation in Santa Monica Bay (California) was examined to identify controls sediment trapping in a bathymetrically complex coastal embayment and to provide geologic context for the post-industrial sedimentary record and associated pollution gradients. Sediment chronologies based on downcore AMS 14C dates were used to quantify long-term (millennia) accumulation rates in an effort to elucidate particle-transport pathways and sinks. Sediment accumulation rates for the full range of bayfloor environments (50-630 m water depths) range from 22 to 102 mg/cm2/year (15-88 mm/100 year), have an overall mean of 51??21 mg/cm2/year (1??, n=11), and are comparable to rates reported for adjacent borderland basins. Maximal accumulation rates on the Malibu shelf and within a reentrant to Redondo canyon are interpreted to reflect (1) proximity to sediment sources and (2) localized oceanographic and topographic conditions conducive to sediment trapping and deposition. The 14C-derived accumulation rates are 2-10 times lower than rates determined through 210Pb geochronology for the same sites in a related study, revealing that Holocene sediment accumulation has been non-steady-state. Santa Monica Bay is an important sink for suspended matter; averaged over the past several millennia a mass of sediment equivalent to 10-80% of the modern annual river supply is sequestered yearly. Net influx of suspended matter derived from the adjacent Palos Verdes shelf is evinced by a concentration gradient of p,p???-DDE in bayfloor sediments, whereas the distribution of anthropogenic silver suggests transport from Santa Monica shelf to the southeastern boundary of the bay. The results of this study provide new insight to the long-term fates of particulate matter in Los Angeles coastal waters. ?? 2003 Elsevier Science Ltd. All rights reserved.

Marine Environmental Research↗

Temporal and spatial distributions of contaminants in sediments of Santa Monica Bay, California

Contaminant inputs from wastewater discharge, a major source of contamination to Santa Monica Bay (SMB), have declined drastically during the last three decades as a result of improved treatment processes and better source control. To assess the concomitant temporal changes in the SMB sediments, a study was initiated in June 1997, in which 25 box cores were collected using a stratified random sampling design. Five sediment strata corresponding to the time intervals of 1890-1920, 1932-1963, 1965-1979, 1979-1989, and 1989-1997 were identified using 210Pb dating techniques. Samples from each stratum were analyzed for metals, 1,1,1-Trichloro-2,2-bis(p-chlorophenyl)ethane (DDT) and its metabolites (DDTs), polychlorinated biphenyls (PCBs), and total organic carbon (TOC). Samples from the 1965-1979, 1979-1989, and 1989-1997 strata were also analyzed for polycyclic aromatic hydrocarbons (PAHs) and linear alkylbenzenes (LABs). Sediment metal concentrations increased from 1890-1979 and were similar during the time intervals of 1965-1979, 1979-1989, and 1989-1997, although the mass emissions of trace metals from sewage inputs declined substantially during the same time period. Trace organic contamination in SMB was generally highest in sediments corresponding to deposition during the years of 1965-1979 or 1979-1989 and showed a decline in concentration in the 1989-1997 stratum. Temporal trends of contamination were greatest in sediments collected from areas near the Hyperion Treatment Plant (HTP) outfall system and on the slope of Redondo Canyon. The highest contaminant concentrations were present in sediments near the HTP 7-mile outfall in the 1965-1979 stratum. Elevated trace metal and organic concentrations were still present in the 1989-1997 stratum of most stations, suggesting that sediment contaminants have moved vertically in the sediment column since sludge discharges from the 7-mile outfall (a dominant source of contamination to the bay) ceased in 1987. The widespread distributions of DDTs and PCBs in SMB and highly confined distribution of LABs around the HTP outfall system were indicative of a dispersal mechanism remobilizing historically deposited contaminants to areas relatively remote from the point of discharge. ?? 2003 Elsevier Science Ltd. All rights reserved.

Marine Environmental Research↗

Response of benthic foraminifers to sewage discharge and remediation in Santa Monica Bay, California

Examination of a time series of foraminiferal assemblage distributions on the continental shelf and slope of Santa Monica Bay from 1955 to 1997-1998 suggests that the benthic microfauna have been greatly affected by the quality and character of the municipal sludge and wastewater discharged into the bay over the last half-century by the Hyperion Treatment Plant serving the greater Los Angeles area. Five species dominate both the living and dead foraminiferal assemblages of the 1997-1998 surface samples, including Eggerella advena, Trochammina pacifica, Bulimina denudata, Buliminella elegantissima, and Epistominella bradyana. Temporal patterns of relative species abundances for both living and dead assemblages, as well as toxicity tests measuring amphipod survival and sea urchin fertilization success, show improvement since the sewage treatment program was enhanced in 1986. None of these trends are evident 10 years earlier, coincident with the onset of a Pacific Decadal Oscillation warming trend. This fact suggests that remediation, and not climate change, is responsible for the faunal changes observed. Even with remediation, however, all foraminiferal faunal trends have not returned to early-outfall levels. The organic-waste indicating species T. pacifica shows a slow decline in abundance as sewage treatment and sludge disposal activities have improved, whereas a dramatic increase in the abundance of the pioneer colonizer of impacted regions, E. advena, has occurred, often with a reciprocal response by B. denudata. Also evident is a dramatic shift in the abundance of the once-dominant species Nonionella basispinata and Nonionella stella, which were unable to recolonize Santa Monica Bay since the two major outfalls (5- and 7-mile) began discharging. Temporal variations in species abundances, as well as range expansions, contractions, and the inability to recolonize areas previously, or presently, impacted, suggests that foraminifers are a useful tool in defining areas affected by waste discharge.

Marine Environmental Research↗

Changing anthropogenic influence on the Santa Monica Bay watershed

Santa Monica Bay is an open coastal embayment located directly seaward of Los Angeles, California. The Bay provides vital economic value through its water-dependent activities, such as swimming, diving, boating, and fishing. An increase from 100,000 residents in 1900 to 10 million in 2000 has imposed numerous environmental stressors on the Bay, including urbanization of the watershed. Pollutant discharges into the Bay increased throughout the early part of the century, but declined following passage of the Clean Water Act in 1972. Since that time, the predominant source of pollutant inputs has changed from point sources to non-point urban runoff. To assess how present-day and historical pollution interact to affect the environmental quality of Santa Monica Bay, three organizations collaborated on a multi-disciplinary study in 1997, towards which this volume is focused. This paper details the temporal patterns of anthropogenic influence on Santa Monica Bay to provide context for the papers that follow.

California↗

Effects of arctic temperatures on distribution and retention of the nuclear waste radionuclides 241Am, 57Co, and 137Cs in the bioindicator bivalve Macoma balthica

The disposal of radioactive wastes in Arctic seas has made it important to understand the processes affecting the accumulation of radionuclides in food webs in coldwater ecosystems. We examined the effects of temperature on radionuclide assimilation and retention by the bioindicator bivalve Macoma balthica using three representative nuclear waste components, 241 Am, 57 Co, and 137 Cs. Experiments were designed to determine the kinetics of processes that control uptake from food and water, as well as kinetic constants of loss. 137 Cs was not accumulated in soft tissue from water during short exposures, and was rapidly lost from shell with no thermal dependence. No effects of temperature on 57 Co assimilation or retention from food were observed. The only substantial effect of polar temperatures was that on the assimilation efficiency of 241 Am from food, where 10% was assimilated at 2 °C and 26% at 12 °C. For all three radionuclides, body distributions were correlated with source, with most radioactivity obtained from water found in the shell and food in the soft tissues. These results suggest that in general Arctic conditions had relatively small effects on the biological processes which influence the bioaccumulation of radioactive wastes, and bivalve concentration factors may not be appreciably different between polar and temperate waters.

Marine Environmental Research↗

Metal concentrations in surface sediments of Boston Harbor: Changes with time

The concentrations of metals in surface sediments of Boston Harbor have decreased during the period 1977–1993. This conclusion is supported by analysis of: (1) surface sediments collected at monitoring stations in the outer harbor between 1977 and 1993; (2) metal concentration profiles in sediment cores from depositional areas of the harbor; and (3) historical data from a contaminated-sediment database, which includes information on metal and organic contaminants and sediment texture. The background and matrix-corrected concentrations of lead (Pb) measured in the surficial layer (0–2 cm) of cores decreased by an average of 46%±12% among four locations in the outer harbor during the 16 y period. Chromium (Cr), copper (Cu), mercury (Hg), silver (Ag), and zinc (Zn) exhibited similar trends. Results from our sediment sampling are supported by historical data that were compiled from diverse sources into a regional sediment database. This sediment database contains approximately 3000 samples; of these, about 460 samples were collected and analyzed for Cu, Hg, or Zn and many other sediment parameters in Boston Harbor surface sediments between 1971–1993. The database indicates that the concentrations of these three metals also decreased with time in Boston’s Inner Harbor. The decreases in metal concentrations that are observed in more recent years parallel a general decrease in the flux of metals to the harbor, implemented by: (1) ending the sewage sludge discharge to the Harbor in December, 1991; (2) greater source reduction (e.g. recovery of silver from photographic processing) and closing or moving of industries; (3) improvements in wastewater handling and sewage treatment; and (4) diminishing use of lead in gasoline beginning about 1973. Despite the general decrease in metal concentrations in Boston Harbor surface sediments, the concentrations of Ag and Hg measured at some outer harbor stations in 1993 were still at, or above, the level associated with frequent adverse effects to marine organisms (guidelines are: Ag 3.7 μ g g −1 , Hg 1.17 μ g g −1 , from Long et al., 1995 ). Concentrations of the other metals listed were in the range considered to occasionally induce adverse biological effects.

Massachusetts↗

Quantifying seascape structure: Extending terrestrial spatial pattern metrics to the marine realm

Spatial pattern metrics have routinely been applied to characterize and quantify structural features of terrestrial landscapes and have demonstrated great utility in landscape ecology and conservation planning. The important role of spatial structure in ecology and management is now commonly recognized, and recent advances in marine remote sensing technology have facilitated the application of spatial pattern metrics to the marine environment. However, it is not yet clear whether concepts, metrics, and statistical techniques developed for terrestrial ecosystems are relevant for marine species and seascapes. To address this gap in our knowledge, we reviewed, synthesized, and evaluated the utility and application of spatial pattern metrics in the marine science literature over the past 30 yr (1980 to 2010). In total, 23 studies characterized seascape structure, of which 17 quantified spatial patterns using a 2-dimensional patch-mosaic model and 5 used a continuously varying 3-dimensional surface model. Most seascape studies followed terrestrial-based studies in their search for ecological patterns and applied or modified existing metrics. Only 1 truly unique metric was found (hydrodynamic aperture applied to Pacific atolls). While there are still relatively few studies using spatial pattern metrics in the marine environment, they have suffered from similar misuse as reported for terrestrial studies, such as the lack of a priori considerations or the problem of collinearity between metrics. Spatial pattern metrics offer great potential for ecological research and environmental management in marine systems, and future studies should focus on (1) the dynamic boundary between the land and sea; (2) quantifying 3-dimensional spatial patterns; and (3) assessing and monitoring seascape change.

Marine Ecology Progress Series↗

Sea-floor texture and physiographic zones of the inner continental shelf from Salisbury to Nahant, Massachusetts, including the Merrimack Embayment and Western Massachusetts Bay

A series of maps that describe the distribution and texture of sea-floor sediments and physiographic zones of Massachusetts State waters from Nahant to Salisbury, Massachusetts, including western Massachusetts Bay, have been produced by using high-resolution geophysical data (interferometric and multibeam swath bathymetry, lidar bathymetry, backscatter intensity, and seismic reflection profiles), sediment samples, and bottom photographs. These interpretations are intended to aid statewide efforts to inventory and manage coastal and marine resources, link with existing data interpretations, and provide information for research focused on coastal evolution and environmental change. Marine geologic mapping of the inner continental shelf of Massachusetts is a statewide cooperative effort of the U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management.

Massachusetts↗

Shallow geology, sea-floor texture, and physiographic zones of the inner continental shelf from Aquinnah to Wasque Point, Martha’s Vineyard, and Eel Point to Great Point, Nantucket, Massachusetts

A series of interpretive maps that describe the shallow geology, distribution, and texture of sea-floor sediments, and physiographic zones of the sea floor along the south and west shores of Martha’s Vineyard and the north shore of Nantucket, Massachusetts, were produced by using high-resolution geophysical data (interferometric and multibeam swath bathymetry, light detection and ranging (lidar) bathymetry, backscatter intensity, and seismic-reflection profiles), sediment samples, and bottom photographs. These interpretations are intended to aid statewide efforts to inventory and manage coastal and marine resources, link with existing data interpretations, and provide information for research focused on coastal evolution and environmental change. Marine geologic mapping of the inner continental shelf of Massachusetts is a statewide cooperative effort of the U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management.

Massachusetts↗

Suwannee river basin and estuary integrated science workshop: September 22-24, 2004 Cedar Key, Florida

In response to the growing number of environmental concerns in the mostly pristine Suwannee River Basin and the Suwannee River Estuary system, the States of Florida and Georgia, the Federal government, and other local organizations have identified the Suwannee River as an ecosystem in need of protection because of its unique biota and important water resources. Organizations with vested interests in the region formed a coalition, the Suwannee Basin Interagency Alliance (SBIA), whose goals are to promote coordination in the identification, management, and scientific knowledge of the natural resources in the basin and estuary. To date, an integrated assessment of the physical, biological, and water resources has not been completed. A holistic, multi-disciplinary approach is being pursued to address the research needs in the basin and estuary and to provide supportive data for meeting management objectives of the entire ecosystem. The USGS is well situated to focus on the larger concerns of the basin and estuary by addressing specific research questions linking water supply and quality to ecosystem function and health across county and state boundaries. A strategic plan is being prepared in cooperation with Federal, State, and local agencies to identify and implement studies to address the most compelling research issues and management questions, and to conduct fundamental environmental monitoring studies. The USGS, Suwannee River Water Management District and the Florida Marine Research Institute are co-sponsoring this scientific workshop on the Suwannee River Basin and Estuary to: Discuss current and past research findings, Identify information gaps and research priorities, and Develop an action plan for coordinated and relevant research activities in the future. This workshop builds on the highly successful basin-wide conference sponsored by the Suwannee Basin Interagency Alliance that was held three years ago in Live Oak, Florida. This years workshop will focus on identifying information needs and priorities and developing partnerships. The USGS is seeking to define the role of the USGS Florida Integrated Science Center (FISC) in conducting integrated research in the Suwannee River Basin, and to establish a cooperative program with other agencies. Participants interested in river, floodplain, springs, estuary, or basin-wide issues are encouraged to attend. Topics for this years workshop include: Water quality and geochemistry: nutrient enrichment, reduction of nutrient loading to ground water, contaminants, and land use, Hydrogeology: interactions among ground water, surface water and ecosystem, modeling, and baseline mapping, Ecosystem dynamics: structure, process, species, and habitats (estuarine, riverine, floodplain, and wetland), and Information management: data sharing, database development, geographic information system (GIS), and basin-wide models.

Open-File Report↗

Understanding ocean acidification impacts on organismal to ecological scales

Ocean acidification (OA) research seeks to understand how marine ecosystems and global elemental cycles will respond to changes in seawater carbonate chemistry in combination with other environmental perturbations such as warming, eutrophication, and deoxygenation. Here, we discuss the effectiveness and limitations of current research approaches used to address this goal. A diverse combination of approaches is essential to decipher the consequences of OA to marine organisms, communities, and ecosystems. Consequently, the benefits and limitations of each approach must be considered carefully. Major research challenges involve experimentally addressing the effects of OA in the context of large natural variability in seawater carbonate system parameters and other interactive variables, integrating the results from different research approaches, and scaling results across different temporal and spatial scales.

Oceanography↗

Wave data processing toolbox manual

Researchers routinely deploy oceanographic equipment in estuaries, coastal nearshore environments, and shelf settings. These deployments usually include tripod-mounted instruments to measure a suite of physical parameters such as currents, waves, and pressure. Instruments such as the RD Instruments Acoustic Doppler Current Profiler (ADCP(tm)), the Sontek Argonaut, and the Nortek Aquadopp(tm) Profiler (AP) can measure these parameters. The data from these instruments must be processed using proprietary software unique to each instrument to convert measurements to real physical values. These processed files are then available for dissemination and scientific evaluation. For example, the proprietary processing program used to process data from the RD Instruments ADCP for wave information is called WavesMon. Depending on the length of the deployment, WavesMon will typically produce thousands of processed data files. These files are difficult to archive and further analysis of the data becomes cumbersome. More imperative is that these files alone do not include sufficient information pertinent to that deployment (metadata), which could hinder future scientific interpretation. This open-file report describes a toolbox developed to compile, archive, and disseminate the processed wave measurement data from an RD Instruments ADCP, a Sontek Argonaut, or a Nortek AP. This toolbox will be referred to as the Wave Data Processing Toolbox. The Wave Data Processing Toolbox congregates the processed files output from the proprietary software into two NetCDF files: one file contains the statistics of the burst data and the other file contains the raw burst data (additional details described below). One important advantage of this toolbox is that it converts the data into NetCDF format. Data in NetCDF format is easy to disseminate, is portable to any computer platform, and is viewable with public-domain freely-available software. Another important advantage is that a metadata structure is embedded with the data to document pertinent information regarding the deployment and the parameters used to process the data. Using this format ensures that the relevant information about how the data was collected and converted to physical units is maintained with the actual data. EPIC-standard variable names have been utilized where appropriate. These standards, developed by the NOAA Pacific Marine Environmental Laboratory (PMEL) (http://www.pmel.noaa.gov/epic/), provide a universal vernacular allowing researchers to share data without translation.

Open-File Report↗