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Environment, taxonomy, and socioeconomics predict non-imperilment in freshwater fishes

Freshwater fishes are among the most threatened taxa, yet conservation assessments remain incomplete for many species. Freshwater fishes provide essential ecosystem services such as food security, recreational opportunities, and cultural significance. Despite heavy alterations to freshwater ecosystems, the reasons for species’ sensitivity and resistance to imperilment are unclear. To address this need, we develop a machine learning framework to predict global imperilment status for 10,631 freshwater fish species using a comprehensive set of environmental, socioeconomic, and intrinsic species-level predictors. Using updated IUCN Red List data, we train and validate Random Forest classifiers to distinguish imperiled (Vulnerable, Endangered, Critically Endangered) from non-imperiled species. We examine the relative influence of 52 variables derived from 12 global sources describing extrinsic environmental and socioeconomic factors and intrinsic species-specific characteristics. Our models achieve higher accuracy for non-imperiled species (90.1%) compared to imperiled species (81.8%), reflecting the greater heterogeneity of threats and conditions driving imperilment. Across models, key predictors include habitat variables, taxonomic order, hydrological characteristics, and disturbance indicators, underscoring the interplay between ecology, geography, and human pressures. This integrative, reproducible approach demonstrates the utility of machine learning for guiding proactive conservation and provides a scalable framework for global biodiversity risk assessment.

Nature Communications

Gopherus agassizii (Cooper 1861) – Agassiz’s Desert Tortoise, Mojave Desert Tortoise

The Mojave Desert Tortoise, Gopherus agassizii (Family Testudinidae), is a large terrestrial species that can reach >370 mm in straight midline carapace length (CL) but most individuals are smaller. Both sexes reach adulthood at 12 to 21 years and ca. 180 mm CL. The species is sexually dimorphic, with males typically larger than females; sexual characteristics of males become more obvious with increasing size and age. Females lay from 1 to 10 eggs per clutch and from 0 to 3 clutches annually, with eggs hatching after 67 to 104 days. Populations of G. agassizii have declined rapidly over the last several decades. Habitat throughout the geographic range has experienced major losses, degradation, and fragmentation as a result of urban and agricultural development, livestock grazing, military activities, transportation and utility corridors, high levels of visitor use, vehicle-oriented recreation, and energy development. Disturbed habitats were vulnerable to invading non-native grasses and forbs, creating an unnatural and destructive grass-fire cycle. When consumed by tortoises as their only diet, non-native (and native) grasses are harmful because of limited nutrients. Additionally, subsidized predators (Common Ravens, Coyotes, and dogs), infectious diseases, drought, and vandalism, add to the catastrophic effects of habitat loss and degradation. Tortoise populations have declined rapidly in density, and most populations are below viability, with fewer than 3.9 adults/km2. These declines occurred despite protections afforded by federal and state laws and regulations, ca. 26,000 km2 of federally designated critical habitat units, two Recovery Plans, and efforts to reduce the negative impacts of human activities. As noted by Allison and McLuckie (2018), the negative population trends in most of the critical habitat units suggest that under current conditions G. agassizii is on the path to extinction. Distribution. – USA. Distributed in parts of the southern Great Basin, Mojave, and western Sonoran deserts in southeastern California, southern Nevada, northwestern Arizona, and southwestern Utah, north and west of the Grand Canyon/Colorado River complex, with the exception of a small population east of the Colorado River. Synonymy. – Xerobates agassizii Cooper 1861, Testudo agassizii, Gopherus agassizii, Gopherus polyphemus agassizii, Scaptochelys agassizii, Xerobates lepidocephalus Ottley and Velázques Solis 1989. Subspecies . – None currently recognized. Status. – IUCN 2019 Red List: Vulnerable (VU A1acde+2cde; assessed 1996) ; TFTSG Provisional Red List: Critically Endangered (CR; assessed 2011, 2018); CITES: Appendix II (Testudinidae spp.); US ESA: Threatened.

Arizona, California, Nevada, Utah