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USGS2000

Nearshore fish distributions in an Alaskan estuary in relation to stratification, temperature, and salinity

Fish were sampled with beach seines and small-meshed beam trawls in nearshore ( < 1 km) and shallow ( < 25 m) habitats on the southern coast of Kachemak Bay, Cook Inlet, Alaska, from June to August, 1996-1998. Fish distributions among habitats were analysed for species composition, catch-per-unit-effort (CPUE) and frequency of occurrence. Two oceanographically distinct areas of Kachemak Bay were sampled and compared: the Outer Bay and the Inner Bay. Outer Kachemak Bay is exposed and receives oceanic, upwelled water from the Gulf of Alaska, whereas the Inner Bay is more estuarine. Thermohaline properties of bottom water in the Outer and Inner Bay were essentially the same, whereas the Inner Bay water-column was stratified with warmer, less saline waters near the surface. Distribution and abundance of pelagic schooling fish corresponded with area differences in stratification, temperature and salinity. The Inner Bay supported more species and higher densities of schooling and demersal fish than the Outer Bay. Schooling fish communities sampled by beach seine differed between the Outer and Inner Bays. Juvenile and adult Pacific sand lance (Ammodytes hexapterus), Pacific herring (Clupea harengus pallasi), osmerids (Osmeridae) and sculpins (Cottidae) were all more abundant in the Inner Bay. Gadids (Gadidae) were the only schooling fish taxa more abundant in the Outer Bay. Thermohaline characteristics of bottom water were similar throughout Kachemak Bay. Correspondingly, bottom fish communities were similar in all areas. Relative abundances (CPUE) were not significantly different between areas for any of the five demersal fish groups: flatfishes (Pleuronectidae), ronquils (Bathymasteridae), sculpins (Cottidae), gadids (Gadidae) and pricklebacks (Stichaeidae).

Estuarine, Coastal and Shelf Science↗

USGS2001

Combined use of remote sensing and continuous monitoring to analyse the variability of suspended-sediment concentrations in San Francisco Bay, California

Analysis of suspended-sediment concentration data in San Francisco Bay is complicated by spatial and temporal variability. In situ optical backscatterance sensors provide continuous suspended-sediment concentration data, but inaccessibility, vandalism, and cost limit the number of potential monitoring stations. Satellite imagery reveals the spatial distribution of surficial-suspended sediment concentrations in the Bay; however, temporal resolution is poor. Analysis of the in situ sensor data in conjunction with the satellite reflectance data shows the effects of physical processes on both the spatial and temporal distribution of suspended sediment in San Francisco Bay. Plumes can be created by large freshwater flows. Zones of high suspended-sediment concentrations in shallow subembayments are associated with wind-wave resuspension and the spring-neap cycle. Filaments of clear and turbid water are caused by different transport processes in deep channels, as opposed to adjacent shallow water.

Estuarine, Coastal and Shelf Science↗

USGS1982

Nutrient exchange across the sediment-water interface in the Potomac River estuary

The flux of ammonia, phosphate, silica and radon-222 from Potomac tidal river and estuary sediments is controlled by processes occurring at the sediment-water interface and within surficial sediment. Calculated diffusive fluxes range between 0·6 and 6·5 mmol m −2 day −1 for ammonia, 0·020 and 0·30 mmol m −2 day −1 for phosphate, and 1·3 and 3·8 mmol m −2 day −1 for silica. Measured in situ fluxes range between 1 and 21 mmol m −2 day −1 for ammonia, 0·1 and 2·0 mmol m −2 day −1 for phosphate, and 2 and 19 mmol m −2 day −1 for silica. The ratio of in situ fluxes to diffusive fluxes (flux enhancement) varied between 1·6 and 5·2 in the tidal river, between 2·0 and 20 in the transition zone, and from 1·3 to 5·1 in the lower estuary. The large flux enhancements from transition zone sediments are attributed to macrofaunal irrigation. Nutrient flux enhancements are correlated with radon flux enhancements, suggesting that fluxes may originate from a common region and that nutrients are regenerated within the upper 10–20 cm of the sediment column. The low fluxes of phosphate from tidal viver sediments reflect the control benthic sediment exerts on phosphorus through sorption by sedimentary iron oxyhydroxides. In the tidal river, benthic fluxes of ammonia and phosphate equal one-half and one-third of the nutrient input of the Blue Plains sewage treatment plant. In the tidal Potomac River, benthic sediment regeneration supplies a significant fraction of the nutrients utilized by primary producers in the water column during the summer months.

Maryland, Virginia↗

USGS1983

Characteristics of resuspended sediment from Georges Bank collected with a sediment trap

A sediment trap was deployed 3 m from the bottom at a water depth of 62 m on the southern flank of Georges Bank (41°02·2′N, 67°33·5′W) from 30 September 1978 to 10 March 1979 to qualitatively determine the size of sediments resuspended from the bottom by winter storms and to determine if seasonal changes in the phytoplankton could be observed in the trapped sediment. Bulk X-ray analyses of the trapped sediment showed layers of distinctly different textures preserved in the collection vessel. The median grain size of sampled layers ranged from 2·7 to 6·5 φ (fine sand to silt), but all layers contained a pronounced mode in the 3 φ (fine sand) range. Nine layers containing relatively large amounts of sand were present. The sand content was 75% in the coarest layers and about 32% in the fine layers. The median grain size of bottom sediments at the deployment site was considerably coarser than the trap samples, although the dominant grain size was also 3 φ. Average bottom-current speeds during the deployment period were about 30 cm s −1 with a range of 10 to 50 cm s −1 . Bottom stress, computed from the observed currents and waves, suggest that 11 storms caused sufficient stress to resuspend 3 φ-sized sediments, in good agreement with the nine layers of relatively coarse sediments collected in the trap. Surface waves had to be included in the calculation of bottom stress because the bottom currents alone were insufficient to cause the resuspension of 3 φ-sized sediment. The trapped sediments contain numerous diatoms and coccoliths that are typical of late fall and winter assemblages. No clear seasonal difference in the flora was noted among sampled layers, probably due to the large influx of resuspended material and a reduced primary flux during this period. An undescribed species of Thalassiosira (G. Fryxell, personal communication), and siliceous scales of unknown systematic position were observed at all levels.

Georges Bank↗

USGS1983

Transport and distribution of bacteria and diatoms in the aqueous surface micro-layer of a salt marsh

The effects of tide and wind upon the distribution and transport of bacteria and diatoms in the aqueous surface microlayers of a Massachusetts and San Francisco Bay salt marsh were examined. The compression of the surface films by both tide and wind resulted in significant enrichments of bacterioneuston. At the San Francisco Bay site, significant numbers of diatoms were transported within the microlayer over a tidal cycle.

Estuarine, Coastal and Shelf Science↗

USGS1983

River discharge controls phytoplankton dynamics in the northern San Francisco Bay estuary

Phytoplankton dynamics in the upper reach of the northern San Francisco Bay estuary are usually characterized by low biomass dominated by microflagellates or freshwater diatoms in winter, and high biomass dominated by neritic diatoms in summer. During two successive years of very low river discharge (the drought of 1976-77), the summer diatom bloom was absent. This is consistent with the hypothesis that formation of the diatom population maximum is a consequence of the same physical mechanisms that create local maxima of suspended sediments in partially-mixed estuaries: density-selective retention of particles within an estuarine circulation cell. Because the estuary is turbid, calculated phytoplankton growth rates are small in the central deep channel but are relatively large in lateral shallow embayments where light limination is less severe. When river discharge falls within a critical range (100–350 m 3 s −1 ) that positions the suspended particulate maximum adjacent to the productive shallow bays, the population of neritic diatoms increases. However, during periods of high discharge (winter) or during periods of very low discharge (drought), the suspended particulate maximum is less well-defined and is uncoupled (positioned downstream or upstream) from the shallow bays of the upper estuary, and the population of neritic diatoms declines. Hence, the biomass and community composition of phytoplankton in this estuary are controlled by river discharge.

California↗

USGS1984

Numerical simulation of phytoplankton productivity in partially mixed estuaries

A two-dimensional steady-state model of light-driven phytoplankton productivity and biomass in partially mixed estuaries has been developed. Effects of variations in river flow, suspended sediment concentration, phytoplankton sinking, self-shading and growth rates on distributions of phytoplankton biomass and productivity are investigated. Numerical simulation experiments show that biomass and productivity are particularly sensitive to variations in suspended sediment concentrations typical of natural river sources and to variations in loss rates assumed to be realistic but poorly known for real systems. Changes in the loss rate term within the range of empirical error (such as from dark bottle incubation experiments) cause phytoplankton biomass to change by a factor of two. In estuaries with adequate light penetration in the water column, it could be an advantage for phytoplankton to sink. Species that sink increase their concentration and form a phytoplankton maximum in a way similar to the formation of the estuarine turbidity maximum. When attenuation is severe, however, sinking species have more difficulty in maintaining their population.

Estuarine, Coastal and Shelf Science↗

USGS1984

Chemical determination of particulate nitrogen in San Francisco Bay. A comparison of two estimates

Particulate nitrogen was measured by both the ultra-violet light-catalyzed peroxide method and the high temperature combustion method. The difference between values obtained with the two methods (combustion minus UV) was found to be linearly correlated with the concentration of total suspended particulate matter (SPM) in the sample. The slope of this correlation was taken to be the concentration of refractory nitrogen associated with the suspended matter, which may be ammonium ions fixed in lattices of clay minerals or organic nitrogen compounds did not vary significantly with SPM, location, water depth or salinity. Refractory nitrogen concentration were possibly related to concentrations of chlorophyll a and to cruise date, but in neither case was the evidence conclusive. Based on the indirect evidence presented, the UV method appears to provide a good measure of biologically reactive nitrogen in this system.

California↗

USGS1985

Subtidal sea level and current variations in the northern reach of San Francisco Bay

Analyses of sea level and current-meter data using digital filters and a variety of statistical methods show a variety of phenomena related to non-local coastal forcing and local tidal forcing in the northern reach of San Francisco Bay, a partially mixed estuary. Low-frequency variations in sea level are dominated by non-local variations in coastal sea level and also show a smaller influence from tidally induced fortnightly sea level variations. Low-frequency currents demonstrate a gravitational circulation which is modified by changes in tidal-current speed over the spring-neap tidal cycle. Transients in gravitational circulation induce internal oscillations with periods of two to four days.

California↗

USGS1985

Harmonic analysis of tides and tidal currents in South San Francisco Bay, California

Water level observations from tide stations and current observations from current-meter moorings in South San Francisco Bay (South Bay), California have been harmonically analysed. At each tide station, 13 harmonic constituents have been computed by a least-squares regression without inference. Tides in South Bay are typically mixed; there is a phase lag of approximately 1 h and an amplification of 1·5 from north to south for a mean semi-diurnal tide. Because most of the current-meter records are between 14 and 29 days, only the five most important harmonics have been solved for east-west and north-south velocity components. The eccentricity of tidal-current ellipse is generally very small, which indicates that the tidal current in South Bay is strongly bidirectional. The analyses further show that the principal direction and the magnitude of tidal current are well correlated with the basin bathymetry. Patterns of Eulerian residual circulation deduced from the current-meter data show an anticlockwise gyre to the west and a clockwise gyre to the east of the main channel in the summer months due to the prevailing westerly wind. Opposite trends have been observed during winter when the wind was variable.

California↗

USGS1985

Increased benthic grazing: An alternative explanation for low phytoplankton biomass in northern San Francisco Bay during the 1976-1977 drought

Among the consequences of extremely low river flow into northern San Francisco Bay during a two-year drought were (1) a gradual increase in salinity, (2) an unusual decline in chlorophyll a concentration, and (3) the upstream migration of estuarine benthic invertebrates to the normally brackish area of the bay. Total abundance in the benthos at a shallow monitoring site increased from a normal 2000 to greater than 20 000 individuals m −2 during the summer of 1977, presumably in response to the increased salinity. Estimated filtration rates derived from equations in the literature for one of the species, the suspended-feeding bivalve Mya arenaria ranged from 1 to 4 m 3 m −2 day −1 during 1977 depending on abundance and mean size on sampling dates. Because water depth at this site is less than 2 m, Mya could have filtered all of the particles (including diatoms) from the water column on the order of once per day. Several other immigrant species undoubtedly contributed to the removal of particles from the near-bottom water as well. Increased benthic grazing, therefore, could have accounted for the anomalously low phytoplankton biomass observed during the drought. These results suggest that during periods of prolonged low river flow and increased salinity benthic food webs could become more important than planktonic food webs in the upper part of the estuary.

California↗

USGS1987

The vertical attenuation of light in Charlotte Harbor, a shallow, subtropical estuary, south-western Florida

The relative contribution of different components to the attenuation of photosynthetically active radiation was determined in the Charlotte Harbor estuarine system based on laboratory and in situ measurements. Agreement between laboratory and in situ measurements of the attenuation coefficient ( k t ) was good ( r 2 = 0·92). For all in situ measurements ( n = 100 ), suspended, non-chlorophyll matter accounted for an average of 72% of k t , dissolved matter accounted for 21%, suspended chlorophyll for 4%, and water for the remaining 3%. For individual determinations, suspended non-chlorophyll matter, dissolved matter, suspended chlorophyll, and water, each accounted for as much as 99%, 79%, 21%, and 18% of k t . Attenuation by suspended matter was greatest near the mouth of the northern tidal rivers and was variable over the rest of the estuarine system. Attenuation by dissolved matter was greatest in the brackish tidal rivers and decreased with increasing salinity. Attenuation due to dissolved matter was positively correlated with water color. The source of the color was basin runoff. Wavelength transmittance changed along the salinity gradient. Maximum transmittance shifted from 500 to 600 nm in gulf waters to 650 to 700 nm in colored, brackish waters. Dissolved matter was primarily responsible for the large attenuation at short wavelengths (400–500 nm).

Florida↗

USGS1987

The distribution of nitrogen species and adsorption of ammonium in sediments from the tidal Potomac River and estuary

The distribution of dissolved ammonium, adsorbed ammonium and residual, organic and total nitrogen was measured in Potomac River tidal, transition zone and lower estuary sediments to a depth of 66 cm. For these sediments, exchangeable ammonium, and thereby adsorbed ammonium concentrations, were determined directly using an ammonia electrode in alkaline sediment suspensions. Ammonia electrode data were comparable to data obtained by KCl extraction of fresh sediment. The conventional unitless ammonium adsorption coefficient, calculated as the slope of the regression line drawn when sediment-adsorbed ammonium (μmol g −1 dry wt of sediment) is plotted against interstitial water ammonium (μmol g −1 dry wt sediment), is 1·5 for this system. When a modified ammonium adsorption coefficient is calculated from sediment-adsorbed ammonium concentrations and a ratio of interstitial water ammonium and potassium concentrations, the regression equation through the data has a zero intercept and is more nearly linear than the regression equation of data based on conventional calculations. The use of a ratio including ammonium and potassium concentrations in the interstitial water term takes into account ionic strength variations in the estuary and competition between ammonium and potassium for adsorption sites.

Maryland, Virginia↗

USGS1987

A study of metal ion adsorption at low suspended-solid concentrations

A procedure for conducting adsorption studies at low suspended solid concentrations in natural waters (<50 mg l −1 ) is described. Methodological complications previously associated with such experiments have been overcome. Adsorption of zinc ion onto synthetic colloidal titania (TiO 2 ) was studied as a function of pH, supporting electrolyte (NaCl) concentration (0·1-0·002 m ) and particle concentration (2–50 mg l −1 ). The lack of success of the Davis Leckie site bonding model in describing Zn(II) adsorption emphasizes the need for further studies of adsorption at low suspended-solid concentrations.

Estuarine, Coastal and Shelf Science↗

USGS1987

Phytoplankton productivity in relation to light intensity: A simple equation

A simple exponential equation is used to describe photosynthetic rate as a function of light intensity for a variety of unicellular algae and higher plants where photosynthesis is proportional to (1-e −β1 ). The parameter β ( =I k −1 "> =I k −1 ) is derived by a simultaneous curve-fitting method, where I is incident quantum-flux density. The exponential equation is tested against a wide range of data and is found to adequately describe P vs. I curves. The errors associated with photosynthetic parameters are calculated. A simplified statistical model (Poisson) of photon capture provides a biophysical basis for the equation and for its ability to fit a range of light intensities. The exponential equation provides a non-subjective simultaneous curve fitting estimate for photosynthetic efficiency ( a ) which is less ambiguous than subjective methods: subjective methods assume that a linear region of the P vs. I curve is readily identifiable. Photosynthetic parameters β and a are used widely in aquatic studies to define photosynthesis at low quantum flux. These parameters are particularly important in estuarine environments where high suspended-material concentrations and high diffuse-light extinction coefficients are commonly encountered.

Estuarine, Coastal and Shelf Science↗

USGS1987

The chemical, physical and structural properties of estuarine ice in Great Bay, New Hampshire

The purpose of this study was to provide general information on the chemical, physical and structural properties of estuarine ice and show how it compares with sea ice found at higher latitudes in order to determine whether the ice in Great Bay can be used as an analog in the study of arctic sea ice. Ice cores and water samples were collected during the 1983–1984 winter season at Adams Point in Great Bay, New Hampshire. Concentrations of chloride, nitrogen (as nitrate and nitrite), bromide, phosphate, sulfate and silicate were determined for samples chosen on the basis of identifiable stratigraphic layers (i.e. bubble size and shape, sediment layers, etc.). Similarities between ice formation in Great Bay and those in the arctic regions include the nature of the freezing process and the ice types produced. In addition, the distribution and concentration of chemical constituents were found to be similar to those observed in arctic sea ice. Factors affecting the chemistry of the ice in Great Bay include rainfall during the freezing season, the presence of sediment layers in the ice cores, the nature of incorporation of brine into the crystal structure of the ice and the drainage of brine.

New Hampshire↗

USGS1988

Nitrogen cycling between sediment and the shallow-water column in the transition zone of the Potomac River and estuary. I. Nitrate and ammonium fluxes

A three-year study of seasonal variation in water-column and sediment nitrogen species was conducted in the transition zone of the Potomac River 35 m from the Virginia shore at a site with an average water-column depth of approximately 1 m over sandy sediment. A diffusion-controlled sampler was used to collect water samples from the water column, at the interface between the water column and sediment, and at several tens of centimeters into the sediment. Nitrate was the predominant dissolved nitrogen species in the water column. The importance of denitrification was inferred by nitrate fluxes which were directed into the sediment from the water column during approximately 75% of the sampling periods and ranged from 0·02 to 0·69 mmol m −2 day −1 . Flux of nitrate from the sediment into the water column, ⩾0·1 mmol m −2 day −1 , due possibly to nitrification in surficial sediment, occurred during one spring and two summer sampling periods. Ammonium fluxes were less than 0·1 mmol m −2 day −1 during 90% of the sampling periods. Of the ammonium fluxes that were >0·05 mmol m −2 day −1 , all were fluxes into the sediment during sampling periods when sediment resuspension occurred, and all were into the water column during periods of calm. The mean value of ammonium flux (0·005 ± 0·05 mmol m −2 day −1 ) from the sandy, shallow-water sediments was two orders of magnitude less than the ammonium fluxes from the deeper, silty channel sediments in the same reach of the river. Diffusive flux calculations suggest that approximately one order of magnitude more nitrate than ammonium is cycled between the shallow-water column and the sandy sediment in the transition zone of the Potomac River.

Maryland, Virginia↗

USGS1988

Columbia Bay, Alaska: An 'upside down' estuary

Circulation and water properties within Columbia Bay, Alaska, are dominated by the effects of Columbia Glacier at the head of the Bay. The basin between the glacier terminus and the terminal moraine (sill depth of about 22 m) responds as an ‘upside down’ estuary with the subglacial discharge of freshwater entering at the bottom of the basin. The intense vertical mixing caused by the bouyant plume of freshwater creates a homogeneous water mass that exchanges with the far-field water through either a two- or a three-layer flow. In general, the glacier acts as a large heat sink and creates a water mass which is cooler than that in fjords without tidewater glaciers. The predicted retreat of Columbia Glacier would create a 40 km long fjord that has characteristics in common with other fjords in Prince William Sound.

Alaska↗