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USGS2018

Beta diversity response to stress severity and heterogeneity in sensitive versus tolerant stream diatoms

Aim Severity and heterogeneity of stress are major constraints of beta diversity, but their relative influence is poorly understood. Here, we addressed this question by examining the patterns of beta diversity in stress‐sensitive versus stress‐tolerant stream diatoms and their response to local versus regional factors along gradients of stress severity and heterogeneity. Location The Adirondack region of New York. Methods Beta diversity was measured as multivariate dispersion of communities across high stress, low stress, and high + low stress (heterogeneous) environments, encompassing 200 stream samples. Null models were implemented to assess community similarity relative to randomly assembled communities and the importance of local assembly processes versus the regional species pool. Results The overall beta diversity was influenced by a combination of severity and heterogeneity of stress, while beta diversity of sensitive species increased with heterogeneity. Beta diversity of tolerant species did not vary with either severity or heterogeneity of stress. Heterogeneity decreased community similarity relative to the null expectation in all groups of species. Stress reduced the importance of local assembly mechanisms for the overall beta diversity and sensitive species beta diversity. In contrast, the importance of local assembly mechanisms increased with stress regarding beta diversity of tolerant species. Main conclusions Beta diversity responded to both severity and heterogeneity of stress, but turnover along these gradients was mostly driven by sensitive species. The overall beta diversity and beta diversity of sensitive species became more constrained by the depauperate regional species pool, as opposed to local assembly mechanisms. While heterogeneous stress contributed to beta diversity, severe stress suppressed beta diversity through elimination of sensitive species. Therefore, an increase in beta diversity in an environmentally‐stressed region may serve as a forewarning for future loss of sensitive species, should the stress continue to intensify.

New York↗

USGS2018

Drivers of chaparral plant diversity

Chaparral diversity has marked spatial and temporal variation. Evolutionary diversity at the genetic, specific, and lineage level contribute to a very diverse flora. Ecological diversity is evident in life histories that comprise a range of physiological and morphological strategies for dealing with drought, and demographic patterns centered around different seedling recruitment strategies. Community or alpha diversity varies markedly through time. Mature chaparral ranges from monotypic stands of chamise ( Adenostoma fasciculatum ) to mixed chaparral often with up to a dozen shrub species. The understory contributes relatively little other than a few diminutive annuals and occasional herbaceous perennial resprouts. However, after fire, diversity increases dramatically and is often dominated by annuals that arise from a dormant seedbank with significant contribution of geophytes resprouting and flowering from dormant bulbs and corms. This flora has very diverse life histories, with some present only a year or two and then existing as a dormant seedbank or bulbs until the next fire. Others may persist much longer, often in gaps in the shrub canopy. Postfire dominance-diversity patterns fit a geometric model as most communities are dominated by a few species and the bulk of the flora comprise subordinates that occupy specific microhabitats. Postfire community assembly is a result of competitive interactions and environmental filtering effects. Beta diversity plays a role in community assembly for as heterogeneity of communities in the landscape increases, the potential species pool for a community increases. Gamma diversity is particularly high because species turnover across latitudinal and elevational gradients is high. The role of diversity in conferring community resilience is complex and a function of the life history of shrub dominants and the historical patterns of fires. Under some circumstances low diversity may be more resilient than high diversity, for example under high fire frequency monotypic stands of Adenostoma fasciculatum may resist change better than diverse stands that include obligate seeding shrubs sensitive to short interval fires. Postfire annuals also are sensitive to short interval fires as these disturbances enhance the invasion by more competitive non-native grasses. Expected increases in anthropogenic ignitions due to population growth are the biggest threat to biodiversity in chaparral.

Book chapter↗

USGS2012

Low-flow characteristics of streams under natural and diversion conditions, Waipiʻo Valley, Island of Hawaiʻi, Hawaiʻi

Over the past 100 years, natural streamflow in Waipiʻo Valley has been reduced by the transfer of water out of the valley by Upper and Lower Hāmākua Ditches. The physical condition and diversion practices along the two ditch systems have varied widely over the years, and as a result, so have their effects on natural streamflow in Waipiʻo Valley. Recent renovation and improvements to Lower Hāmākua Ditch system, along with proposals for its future operation and water-diversion strategies, have unknown implications. The purpose of this report is to quantify the availability of streamflow and to determine the effects of current and proposed diversion strategies on the low-flow hydrology in Waipiʻo Valley. In this report, the low-flow hydrology of Waipiʻo Valley is described in terms of flow-duration statistics. Flow-duration statistics were computed for three locations in the Waipiʻo Valley study area where long-term surface-water gaging stations have been operated. Using a variety of streamflow record-extension techniques, flow-duration statistics were estimated at an additional 13 locations where only few historical data are available or where discharge measurements were made as part of this study. Flow-duration statistics were computed to reflect natural conditions, current (2000-2005) diversion conditions, and proposed future diversion conditions at the 16 locations. At the downstream limit of the study area, on Wailoa Stream at an altitude of 190 feet, a baseline for evaluating the availability of streamflow is provided by computed flow-duration statistics that are representative of natural, no-diversion conditions. At the Wailoa gaging station, 95- and 50-percentile discharges under natural conditions were determined to be 86 and 112 cubic feet per second, respectively. Under 1965-1969 diversion conditions, natural 95- and 50-percentile discharges were reduced by 52 and 53 percent, to 41 and 53 cubic feet per second, respectively. Under current (2000-2005) diversion conditions, natural 95- and 50-percentile discharges were reduced by 21 and 24 percent, to 68 and 85 cubic feet per second, respectively. Under proposed future diversion conditions, natural 95- and 50-percentile discharges would be reduced by 33 and 24 percent, to 58 and 85 cubic feet per second, respectively. Compared to discharges that reflect current (2000-2005) diversion conditions, proposed future diversion conditions would reduce 95-percentile discharges, which are representative of moderate drought levels in the stream, by 15 percent. No change would be expected in 50-percentile discharges, which are representative of normal conditions. The effects of current (2000-2005) and proposed future diversion conditions on the natural flow of streams in the Waipiʻo Valley study area differ, depending on the location. Under current (2000-2005) diversion conditions, reductions in natural 95- or 50-percentile discharges of greater than 30 percent were found in Kawainui Stream downstream from Upper Hamakua Ditch to an altitude of about 1,435 feet and in the reach of Waimā Stream between Upper and Lower Hāmākua Ditches. Under proposed future diversion conditions, reductions in natural 95- or 50-percentile discharges of greater than 30 percent were found in Kawainui Stream downstream from Upper Hamakua Ditch to an altitude of about 1,435 feet, in the reach of Waimā Stream between Upper and Lower Hāmākua Ditches, and along most stream reaches downstream from Lower Hāmākua Ditch, except for Waimā Stream.

Hawai?i↗

USGS2023

Sediment and nutrient deposition over a reconnected floodplain during large-scale river diversions, the Bonnet Carré spillway in 2011, 2016, and 2019

In hopes of reversing or slowing the decline of the river delta, water diversions have been built and planned, and natural diversions have formed and been allowed to develop along the lower Mississippi River. In addition to the possibility of building land, these diversions allow for the storage of nutrients within the deposited sediments and provide a buffer from coastal storm surge flooding. Deposition from diversions reduces nutrient loading to the receiving waterbodies. Along the Mississippi River delta in Louisiana, modern planned diversions after 2017 (CPRA 2017) seek to bring sediment-laden water from the river to a receiving area that may once have been part of the historic delta floodplain. Many of the existing diversions discharge directly into open-water bays of the subaqueous delta, however some flood diversions outflow to the subaerial floodplain (Kroes et al. 2015). The effects of diversion outflows to bays are difficult to physically analyze and quantify due to the complex hydrodynamics of subaqueous sites, such as storm-driven resuspension, and tidal currents that mobilize deposited fine sediments downcoast or off the continental shelf. In contrast, flood diversions that outflow to subaerial floodplains offer clear and numerous sediment deposition measurement opportunities and clearly identifiable material to analyze. Flood diversions, while similar, may not exhibit identical depositional environments due to hydraulic gradient and vegetation differences. Because flood diversions draw water from the river at a greater height above the riverbed, they may entrain less bed sediment than non-flood diversions (Karmaker et al. 2010). Previous studies indicate that the large discharges through flood diversion control structures deposit large masses of sediment (Nittrouer et al. 2012) and nutrients and can provide depositional curves that may be extrapolated to other diversions (Kroes et al. 2015).

Louisiana↗

USGS2018

Effects of the proposed California WaterFix North Delta Diversion on survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin River Delta, northern California

The California Department of Water Resources and Bureau of Reclamation propose new water intake facilities on the Sacramento River in northern California that would convey some of the water for export to areas south of the Sacramento-San Joaquin River Delta (hereinafter referred to as the Delta) through tunnels rather than through the Delta. The collection of water intakes, tunnels, pumping facilities, associated structures, and proposed operations are collectively referred to as California WaterFix. The water intake facilities, hereinafter referred to as the North Delta Diversion (NDD), are proposed to be located on the Sacramento River downstream of the city of Sacramento and upstream of the first major river junction where Sutter Slough branches from the Sacramento River. The NDD can divert a maximum discharge of 9,000 cubic feet per second (ft3 /s) from the Sacramento River, which reduces the amount of Sacramento River inflow into the Delta. In this report, we conduct four analyses to investigate the effect of the NDD and its proposed operation on survival of juvenile Chinook salmon (Oncorhynchus tshawytscha). All analyses used the results of a Bayesian survival model that allowed us to simulate travel time, migration routing, and survival of juvenile Chinook salmon migrating through the Delta in response to NDD operations, which affected both inflows to the Delta and operation of the Delta Cross Channel (DCC). For the first analysis, we evaluated the effect of the NDD bypass rules on salmon survival. The NDD bypass rules are a set of operational rule curves designed to provide adaptive levels of fish protection by defining allowable diversion rates as a function of (1) Sacramento River discharge as measured at Freeport, and (2) time of year when endangered runs requiring the most protection are present. We determined that all bypass rule curves except constant low-level pumping (maximum diversion of 900 ft3 /s) could cause a sizeable decrease in survival by as much as 6–10 percentage points. The maximum decrease in survival occurred at an intermediate Sacramento River flow of about 20,000–30,000 ft3 /s. Diversion rates increased rapidly as Sacramento River flows increased from 20,000 ft3 /s to 30,000 ft3 /s, until a maximum diversion rate was reached at 9,000 ft3 /s. Because through-Delta survival increases sharply over this range of Sacramento River flow before beginning to level off with further flow increases, increasing diversion rates over this flow range causes a large decrease in survival relative to no diversion. For the second analysis, we applied the survival model to 82 years of daily simulated flows under the Proposed Action (PA) and No Action Alternative (NAA). The PA includes operation of the Central Valley Project/State Water Project with implementation of the NDD and its operations prescribed by the NDD bypass rules, whereas the NAA assumes system operations without implementation of the NDD. We also evaluated a “Level 1” (L1) scenario, which was similar to the PA scenario but applied the most protective bypass rule known as Level 1 post-pulse operations. We noted a high probability that survival under the PA scenario was lower than under the NAA scenario, and that travel time was longer under PA relative to NAA in most simulation years. However, the largest survival differences between the PA and NAA scenarios occurred during October–November and May–June. Although bypass rules are less restrictive during these periods, we determined that more frequent use of the DCC under PA led to the largest differences in survival between the two scenarios. Additionally, we noted no difference in median survival decreases between the PA and L1 scenarios, although in some years the L1 scenario had a lower survival decrease than the PA scenario. For the third analysis, we proposed a quantitative approach for developing NDD rule curves (that is, prescribed diversion flows for given inflows) by using the survival model to identify diversion rates that meet a criterion of a having a small probability of exceeding a given decrease in survival. We examined diversion rates that led to a 10% chance of exceeding a given decrease in survival for a range of absolute and relative decreases in survival. To maintain a given constant level of protection across the range of river flows, our analysis indicated that diversions had to increase at a much slower rate with respect to Sacramento River flow relative to the rule curves defined in the NDD bypass table. Additionally, we determined that diversion rates could be higher than under the bypass table rule curves at river flows less than 20,000 ft3 /s, but diversions had to be less than defined by NDD bypass rules at higher flows. For the fourth analysis, we simulated the effect of “real-time operations” on salmon survival, where bypass flow rates were determined by the presence of juvenile salmon entering the Delta, as indicated by juvenile salmon catch in a rotary screw trap upstream of the Delta. For this analysis, we evaluated NDD operations as defined by the L1 scenario and an additional scenario (Unlimited Pulse Protection [UPP]) that provided protection to an unlimited number of fish pulses. This analysis indicated that the highest catches occurred during flow pulses when daily survival was high, which caused annual survival to be weighted towards periods of high daily survival, resulting in a high annual survival. We determined that the mean annual survival decreased by 1–4 percentage points, and annual survival decreases were more frequently smaller for the UPP scenario. Additionally, because the UPP scenario protected an unlimited number of fish pulses, decreases in daily survival under the UPP scenario were less than under the L1 scenario.

California↗

USGS2006

Effects of Surface-Water Diversion and Ground-Water Withdrawal on Streamflow and Habitat, Punaluu Stream, Oahu, Hawaii

The surface- and ground-water resources of the Punaluu area of northeast Oahu, Hawaii, have been and continue to be important for cultural, domestic, agricultural, recreational, and aesthetic purposes. Punaluu Stream flows perennially because rain falls frequently in the area and ground water discharges to the stream. Flow in Punaluu Stream is reduced by the direct diversion of water for off-stream uses and possibly from the withdrawal of ground water near the stream. Punaluu Ditch diverts water from Punaluu Stream near an altitude of 210 feet. During the recent period 1995-2004, discharge in Punaluu Stream that was equaled or exceeded 50 percent of the time (median or Q50 discharge) and discharge that was equaled or exceeded 95 percent of the time (Q95 discharge) measured immediately upstream from the Punaluu Ditch diversion intake, respectively, were 18 and 13 cubic feet per second, whereas the Q50 and Q95 discharges measured immediately downstream from the diversion intake, respectively, were 7.0 and 1.3 cubic feet per second. Thus, near an altitude of 210 feet, diversion of surface water by the Punaluu Ditch caused the Q50 discharge in Punaluu Stream to be reduced to 39 percent of the natural Q50 discharge, and the Q95 discharge was reduced to 10 percent of the natural value. The relative effects of the Punaluu Ditch diversion on flow in Punaluu Stream decreased in a downstream direction, mainly because of the compensating effects of tributary inflows and ditch return flows. At an altitude of 10 feet, the Q50 discharge in Punaluu Stream was 82 percent of the natural Q50 discharge, and the Q95 discharge was 69 percent of the natural value. Changes in streamflow affect the quantity and quality of physical habitat used by native stream fauna. The Physical Habitat Simulation System (PHABSIM) approach was used to evaluate the effects of different diversion scenarios on physical habitat for selected native species in Punaluu Stream. Habitat-suitability criteria developed for streams in northeast Maui, Hawaii, were used to determine the effects of incremental changes in streamflow on physical habitat, in terms of weighted usable area (WUA) in Punaluu Stream. The effects of different diversion conditions on WUA for Neritina granosa and Awaous guamensis were evaluated by determining the average number of days per year for which WUA values are less than a specified reference value (during periods when discharge is less than or equal to the median natural discharge). For recent diverted conditions (1995-2004), the average number of days per year that WUA values are less than 50 or 75 percent of the WUA value at median natural discharge generally (1) decreases in a downstream direction, reflecting the effects of tributary inflows and ditch return flows, (2) is less than the corresponding number of days for constant diversion rates greater than about 4-5 cubic feet per second at a stream altitude of 10 feet, and (3) is greater than the corresponding number of days for a constant diversion rate of 10 cubic feet per second at stream altitudes of 40, 100, and 140 feet. The number of days that WUA values are less than 75 percent of the WUA value at median natural discharge generally increases substantially for constant diversion rates exceeding about 4-5 cubic feet per second. At stream altitudes of 10, 40, 100, and 200 feet and for constant diversion rates of up to 4 cubic feet per second, WUA values are less than 75 percent of the WUA value at median natural discharge for fewer than 13 days per year. At stream altitudes above 40 feet and for a constant diversion rate of 10 cubic feet per second, WUA values are less than 75 percent of the WUA value at median natural discharge for 131 to 183 days per year. Stream temperature is a factor that potentially could affect the abundance and distribution of native aquatic species. Measured stream temperatures immediately upstream and downstream from the diversion intake did not indicat

Scientific Investigations Report↗

USGS2016

Do the rich get richer? Varying effects of tree species identity and diversity on the richness of understory taxa

Understory herbs and soil invertebrates play key roles in soil formation and nutrient cycling in forests. Studies suggest that diversity in the canopy and in the understory are positively associated, but these studies often confound the effects of tree species diversity with those of tree species identity and abiotic conditions. We combined extensive field sampling with structural equation modeling to evaluate the simultaneous effects of tree diversity on the species diversity of understory herbs, beetles, and earthworms. The diversity of earthworms and saproxylic beetles was directly and positively associated with tree diversity, presumably because species of both these taxa specialize on certain species of trees. Tree identity also strongly affected diversity in the understory, especially for herbs, likely as a result of interspecific differences in canopy light transmittance or litter decomposition rates. Our results suggest that changes in forest management will disproportionately affect certain understory taxa. For instance, changes in canopy diversity will affect the diversity of earthworms and saproxylic beetles more than changes in tree species composition, whereas the converse would be expected for understory herbs and detritivorous beetles. We conclude that the effects of tree diversity on understory taxa can vary from positive to negative and may affect biogeochemical cycling in temperate forests. Thus, maintaining high diversity in temperate forests can promote the diversity of multiple taxa in the understory.

Ecology↗

USGS2004

A water-budget analysis of Medina and Diversion Lakes and the Medina/Diversion Lake system, with estimated recharge to Edwards aquifer, San Antonio area, Texas

In January 2001, the U.S. Geological Survey—in cooperation with the Edwards Aquifer Authority—began a study to refine and, if possible, extend previously derived (1995–96) relations between the stage in Medina Lake and recharge to the Edwards aquifer to include the effects of reservoir stages below 1,018 feet and greater than 1,046 feet above National Geodetic Vertical Datum of 1929. The principal objective of this present (2001–02) study was to estimate ground-water outflow (seepage) from Medina Lake, Diversion Lake, and from the Medina/Diversion Lake system through the calculation of water budgets representing steady-state conditions over as wide a range as possible in the stages of Medina and Diversion Lakes. The water budgets were compiled for selected periods during which time the water-budget components were inferred to be relatively stable and the influence of precipitation, stormwater runoff, and changes in storage were presumably minimal. Water budgets for the Medina/Diversion Lake system were compiled for 127 water-budget periods ranging from 8 to 78 days from daily hydrologic data collected during March 1955–September 1964, October 1995–September 1996, and February 2001–June 2002. Budgets for Medina and Diversion Lakes were compiled for 14 periods ranging from 8 to 23 days from daily hydrologic data collected only during October 1995–September 1996 and April 2001–June 2002. Linear equations were developed to relate the stage in Medina Lake to ground-water outflow from Medina Lake, Diversion Lake, and the Medina/Diversion Lake system. The computed mean rates of outflow from Medina Lake ranged from about 18 to 182 acre-feet per day between stages of 1,019 and 1,064 feet above National Geodetic Vertical Datum of 1929. The computed rates of outflow from Diversion Lake ranged from about -85 to 52 acre-feet per day. The rates of outflow from the entire lake system ranged from about 5 to 178 acre-feet per day between Medina Lake stages of 963 to 1,064 feet. It is assumed that all outflow from the lake system enters the ground-water system as recharge to the Edwards aquifer. During the time that the stage in Medina Lake was greater than about 1,040 feet, Diversion Lake gained more water than it lost to the ground-water system and the rate of ground-water outflow from Medina Lake increased sharply while its stage was between about 1,043 and 1,045 feet. The observed outflow from Diversion Lake during this time decreased sharply to the extent that a net gain resulted—indicating that a substantial amount of the additional outflow from Medina Lake returned to Diversion Lake. When the stage in Medina Lake is at the spillway elevation of 1,064 feet, Diversion Lake appears to gain as much as 40 percent of the concurrent ground-water outflow from Medina Lake. An indication of water moving from the lake system into the ground-water system and back to the surface-water system was observed in the most downstream reach of the Medina River, between Diversion Lake and the Medina River near Riomedina. During conditions of no flow over Diversion Dam, this reach of the Medina River gained from about 32 to 94 acre-feet per day, with the gain increasing with increasing stage in Diversion Lake. The average of the monthly recharge to the Edwards aquifer from the Medina/Diversion Lake system—as estimated by the present study for the October 1995–September 2002 period—is 3,083 acre-feet, or about 56 percent of recharge computed for this period with a previously used (Lowry) method. The present study’s estimates of recharge for months with rising-lake stage conditions are about 44 percent of those computed with the previously used method, compared to about 60 percent for months with steady or falling-stage conditions. For stages greater than 1,045 feet, the present study estimated recharge to be about 52 percent of that computed with the previously used method, compared to about 64 percent at stages below 1,045 feet.

Texas↗

USGS2023

Effects of environment and metacommunity delineation on multiple dimensions of stream fish beta diversity

Introduction: Beta diversity represents changes in community composition among locations across a landscape. While the effects of human activities on beta diversity are becoming clearer, few studies have considered human effects on the three dimensions of beta diversity: taxonomic, functional, and phylogenetic. Including anthropogenic factors and multiple dimensions of biodiversity may explain additional variation in stream fish beta diversity, providing new insight into how metacommunities are structured within different spatial delineations. Methods: In this study, we used a 350 site stream fish abundance dataset from South Carolina, United States to quantify beta diversity explainable by spatial, natural environmental, and anthropogenic variables. We investigated three spatial delineations: (1) a single whole-state metacommunity delineated by political boundaries, (2) two metacommunities delineated by a natural geomorphic break separating uplands from lowlands, and (3) four metacommunities delineated by natural watershed boundaries. Within each metacommunity we calculated taxonomic, functional, and phylogenetic beta diversity and used variation partitioning to quantify spatial, natural environmental, and anthropogenic contributions to variations in beta diversity. Results: We explained 25–81% of the variation in stream fish beta diversity. The importance of these three factors in structuring metacommunities differed among the diversity dimensions, providing complementary perspectives on the processes shaping beta diversity in fish communities. The effect of spatial, natural environmental, and anthropogenic factors varied among the spatial delineations, which indicate conclusions drawn from variation partitioning may depend on the spatial delineation chosen by researchers. Discussion: Our study highlights the importance of considering human effects on metacommunity structure, quantifying multiple dimensions of beta diversity, and careful consideration of user-defined metacommunity boundaries in beta diversity analyses.

South Carolina↗

USGS2025

Low genetic diversity in populations of a clonal invasive plant limits sexual reproduction

Premise Clonality, a form of asexual reproduction and spread, is common among invasive plants, though sexual reproduction via seeds is often still important for their long-range dispersal. In small populations, clonality has been hypothesized to interfere with sexual reproduction by limiting outcrossing opportunities of a plant. Methods We developed a structural equation model based on estimates of genetic diversity and seed production of Lepidium draba , a problematic invasive clonal plant, at 26 sites in Colorado to test whether site characteristics relating to small founder populations resulted in low genetic diversity and sexual reproduction. The next year, in pollen supplementation experiments at six sites (three with high genetic diversity, three with low), we tested whether populations with low genetic diversity were limited by non-self pollen. Results Large populations and populations associated with rivers tended to have higher genetic diversity. Percentage seed fill and total seed production were considerably higher at sites with higher genetic diversity. At populations with low genetic diversity, supplementation with pollen from outside of the site, but not from within the site, increased seed production. At populations with high genetic diversity, pollen supplementation from off-site did not increase seed production. Conclusions Our study shows that, in low-diversity populations that are dominated by a few large clones, L. draba produces few seeds compared to high-diversity populations and that this appears to be due to limited availability of non-self pollen. The data indicate that low genetic diversity decreases sexual reproduction, which may greatly reduce long-distance dispersal from these populations.

Colorado↗

USGS2022

Genetic diversity and mate selection in a reintroduced population of gray wolves

The genetic composition of an individual can markedly affect its survival, reproduction, and ultimately fitness. As some wildlife populations become smaller, conserving genetic diversity will be a conservation challenge. Many imperiled species are already supported through population augmentation efforts and we often do not know if or how genetic diversity is maintained in translocated species. As a case study for understanding the maintenance of genetic diversity in augmented populations, I wanted to know if genetic diversity (i.e., observed heterozygosity) remained high in a population of gray wolves in the Rocky Mountains of the U.S. > 20 years after reintroduction. Additionally, I wanted to know if a potential mechanism for such diversity was individuals with below average genetic diversity choosing mates with above average diversity. I also asked whether there was a preference for mating with unrelated individuals. Finally, I hypothesized that mated pairs with above average heterozygosity would have increased survival of young. Ultimately, I found that females with below average heterozygosity did not choose mates with above average heterozygosity and wolves chose mates randomly with respect to genetic relatedness. Pup survival was not higher for mated pairs with above average heterozygosity in my models. The dominant variables predicting pup survival were harvest rate during their first year of life and years pairs were mated. Ultimately, genetic diversity was relatively unchanged > 20 years after reintroduction. The mechanism for maintaining such diversity does not appear related to individuals preferentially choosing more genetically diverse mates. Inbreeding avoidance, however, appears to be at least one mechanism maintaining genetic diversity in this population.

Idaho↗

USGS2015

Genetic diversity is related to climatic variation and vulnerability in threatened bull trout

Understanding how climatic variation influences ecological and evolutionary processes is crucial for informed conservation decision-making. Nevertheless, few studies have measured how climatic variation influences genetic diversity within populations or how genetic diversity is distributed across space relative to future climatic stress. Here, we tested whether patterns of genetic diversity (allelic richness) were related to climatic variation and habitat features in 130 bull trout ( Salvelinus confluentus ) populations from 24 watersheds (i.e., ~4–7th order river subbasins) across the Columbia River Basin, USA. We then determined whether bull trout genetic diversity was related to climate vulnerability at the watershed scale, which we quantified on the basis of exposure to future climatic conditions (projected scenarios for the 2040s) and existing habitat complexity. We found a strong gradient in genetic diversity in bull trout populations across the Columbia River Basin, where populations located in the most upstream headwater areas had the greatest genetic diversity. After accounting for spatial patterns with linear mixed models, allelic richness in bull trout populations was positively related to habitat patch size and complexity, and negatively related to maximum summer temperature and the frequency of winter flooding. These relationships strongly suggest that climatic variation influences evolutionary processes in this threatened species and that genetic diversity will likely decrease due to future climate change. Vulnerability at a watershed scale was negatively correlated with average genetic diversity ( r = −0.77; P < 0.001); watersheds containing populations with lower average genetic diversity generally had the lowest habitat complexity, warmest stream temperatures, and greatest frequency of winter flooding. Together, these findings have important conservation implications for bull trout and other imperiled species. Genetic diversity is already depressed where climatic vulnerability is highest; it will likely erode further in the very places where diversity may be most needed for future persistence.

Global Change Biology↗

USGS1973

Species diversity: Patterns in modern and Miocene foraminifera of the eastern margin of North America

Patterns of foraminiferal species diversity were examined along the eastern margin of North America by utilizing the number of species, S, the information function, H(S), and species equitability, E. The 350 modern samples we studied extended from the Arctic to the Gulf of Mexico at depths ranging from a few meters to more than 5,000 m. In addition, 29 samples from Miocene strata of the Atlantic Coastal Plain and continental shelf were studied. Modern species diversity as measured by S and H(S) generally increases as depth increases and latitude decreases. Some notable exceptions occur, however, which are difficult to explain. For example, species diversity in the Arctic depth interval of 0 to 100 m is as high or higher than that found immediately south of Nova Scotia, in the Gulf of Maine, on Browns and Georges Banks, and even off the Gulf of Mexico deltas. At the moderate depth interval of 100 to 1,000 m, however, the entire margin north of Browns and Georges Banks has lower diversities than that to the south. The highest diversity by far in this depth interval occurs in the northeastern Gulf of Mexico. At the depth interval greater than 1,000 m, the more southern areas studied generally have a higher species diversity than the more northern Cape Cod to Maryland area. An exception to this is the northwestern Gulf of Mexico; this area is also an exception in that species diversity is significantly lower in the deeper waters than in the shallower waters in the same area. The measure of species equitability, E, showed no clear pattern with depth or latitude. This may be so because no simple pattern of species proportions exists or because the sampling was inadequate to measure it. Samples from the Miocene strata show a striking resemblance in species diversity to modern samples at similar depths and latitudes. Our observations indicate that species diversity and equitability have not increased during the last 15 × 10 6 yrs. The fossil and modern data indicate that each environment has its own carrying capacity and that this capacity is reached rather quickly. Although time and environmental stability are undoubtedly important in determining species diversity, as presently defined they are inadequate to explain all observed patterns. Long-term observations in various environments will be required to determine the relative importance of variables that affect species diversity.

Geological Society of America Bulletin↗

USGS2023

Genetic diversity and IUCN Red List status

The International Union for Conservation of Nature (IUCN) Red List is an important and widely used tool for conservation assessment. The IUCN uses information about a species’ range, population size, habitat quality and fragmentation levels, and trends in abundance to assess extinction risk. Genetic diversity is not considered, although it affects extinction risk. Declining populations are more strongly affected by genetic drift and higher rates of inbreeding, which can reduce the efficiency of selection, lead to fitness declines, and hinder species’ capacities to adapt to environmental change. Given the importance of conserving genetic diversity, attempts have been made to find relationships between red-list status and genetic diversity. Yet, there is still no consensus on whether genetic diversity is captured by the current IUCN Red List categories in a way that is informative for conservation. To assess the predictive power of correlations between genetic diversity and IUCN Red List status in vertebrates, we synthesized previous work and reanalyzed data sets based on 3 types of genetic data: mitochondrial DNA, microsatellites, and whole genomes. Consistent with previous work, species with higher extinction risk status tended to have lower genetic diversity for all marker types, but these relationships were weak and varied across taxa. Regardless of marker type, genetic diversity did not accurately identify threatened species for any taxonomic group. Our results indicate that red-list status is not a useful metric for informing species-specific decisions about the protection of genetic diversity and that genetic data cannot be used to identify threat status in the absence of demographic data. Thus, there is a need to develop and assess metrics specifically designed to assess genetic diversity and inform conservation policy, including policies recently adopted by the UN's Convention on Biological Diversity Kunming-Montreal Global Biodiversity Framework.

Conservation Biology↗

USGS1996

Genetic diversity of North American isolates of Renibacteriumsalmoninarum

Genetic diversity of Renibacterium salmoninarum was evaluated by multilocus enzyme electrophoresis (MEE). Whole cell lysates were prepared for 40 isolates representing 5 groups based on host and geographic area. Each lysate was assessed for activity of 44 enzymes with a pH 6.5 amine-citrate and a pH 8.0 buffer. Genetic variation was scored at 26 loci. Two zones of activity (presumptive loci) were scored each for esterase (EC 3.1.1.1) and glycyl-leucine peptidase (EC 3.4.11.x). There were no monomorphic loci and there was an average of 2.65 electromorphs per locus. There were 21 electrophoretic types. Mean genetic diversity ( H T ) was 0.161 and the percentage of this explained by diversity between groups was G st = 8.1%; thus 91.9% of the genetic diversity was due to heterogeneity between individual isolates. The 2 groups with the highest genetic diversity were from chinook Oncorhynchus tshawytscha and coho O . kisutch salmon, both from the Manistee Weir, Michigan, USA; i.e. 0.270 and 0.298, respectively. The highest genetic diversity for a locus ( h T ) was 0.587 for EST-1. At this locus, diversity between groups explained a higher percentage of the total diversity ( G st = 36.5%). Other loci with relatively high genetic diversity were succinate dehydrogenase (0.385; EC 1.3.99.1), cytochrome c oxidase (0.273; EC 1.9.3.1) and aconitase (0.311; EC 4.2.1.3). The results of this study indicate relatively low genetic diversity of R . salmoninarum .

Diseases of Aquatic Organisms↗

USGS2026

Relative influence of flow regime, natural and anthropogenic environment on multidimensional stream fish diversity

The flow regime is considered a ‘master variable’ in riverine ecology because it directly influences stream geomorphology and biological communities. However, other environmental and anthropogenic factors have direct and synergistic effects with flow on fish diversity, complicating estimates of the flow regime's true importance. Moreover, most flow-ecology studies focus only on taxonomic diversity (i.e., species), without considering functional (trait-focused) or phylogenetic (evolution-focused) dimensions of diversity. In this study, we used linear regression with variation partitioning to parse out the independent and shared roles of the flow regime, physical environmental factors (e.g., soil characteristics) and the anthropogenic environment (e.g., developed land cover) for structuring multidimensional diversity of 365 stream fish communities in two biogeographic regions across South Carolina, USA. These variables explained between 8% and 18% of total variation of the local diversity. The flow regime contributed to diversity in all cases, but frequently covaried with physical and/or anthropogenic environmental variables. This covariation indicated that the independent role of flow would have been inflated if other environmental variables were not considered. The three dimensions of stream fish diversity were weakly correlated with one another and were associated with different environmental variables, indicating that each of them represents unique and complimentary facets of fish diversity. Accordingly, only considering the independent effects of instream flow on fish diversity may miss meaningful interactions between the flow regime and the other components of the environment that influence biodiversity patterns, leading to over simplified flow–ecology relationships.

South Carolina↗

USGS2021

Global commitments to conserving and monitoring genetic diversity are now necessary and feasible

Global conservation policy and action have largely neglected protecting and monitoring genetic diversity—one of the three main pillars of biodiversity. Genetic diversity (diversity within species) underlies species’ adaptation and survival, ecosystem resilience, and societal innovation. The low priority given to genetic diversity has largely been due to knowledge gaps in key areas, including the importance of genetic diversity and the trends in genetic diversity change; the perceived high expense and low availability and the scattered nature of genetic data; and complicated concepts and information that are inaccessible to policymakers. However, numerous recent advances in knowledge, technology, databases, practice, and capacity have now set the stage for better integration of genetic diversity in policy instruments and conservation efforts. We review these developments and explore how they can support improved consideration of genetic diversity in global conservation policy commitments and enable countries to monitor, report on, and take action to maintain or restore genetic diversity.

BioScience↗

USGS2012

Patterns and controlling factors of species diversity in the Arctic Ocean

Aim The Arctic Ocean is one of the last near-pristine regions on Earth, and, although human activities are expected to impact on Arctic ecosystems, we know very little about baseline patterns of Arctic Ocean biodiversity. This paper aims to describe Arctic Ocean-wide patterns of benthic biodiversity and to explore factors related to the large-scale species diversity patterns. Location Arctic Ocean. Methods We used large ostracode and foraminiferal datasets to describe the biodiversity patterns and applied comprehensive ecological modelling to test the degree to which these patterns are potentially governed by environmental factors, such as temperature, productivity, seasonality, ice cover and others. To test environmental control of the observed diversity patterns, subsets of samples for which all environmental parameters were available were analysed with multiple regression and model averaging. Results Well-known negative latitudinal species diversity gradients (LSDGs) were found in metazoan Ostracoda, but the LSDGs were unimodal with an intermediate maximum with respect to latitude in protozoan foraminifera. Depth species diversity gradients were unimodal, with peaks in diversity shallower than those in other oceans. Our modelling results showed that several factors are significant predictors of diversity, but the significant predictors were different among shallow marine ostracodes, deep-sea ostracodes and deep-sea foraminifera. Main conclusions On the basis of these Arctic Ocean-wide comprehensive datasets, we document large-scale diversity patterns with respect to latitude and depth. Our modelling results suggest that the underlying mechanisms causing these species diversity patterns are unexpectedly complex. The environmental parameters of temperature, surface productivity, seasonality of productivity, salinity and ice cover can all play a role in shaping large-scale diversity patterns, but their relative importance may depend on the ecological preferences of taxa and the oceanographic context of regions. These results suggest that a multiplicity of variables appear to be related to community structure in this system.

Journal of Biogeography↗