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USGS2021

The Confocal Laser Scanning Microscopy Working Group of the ICCP: Final report 2021

This report summarizes the activities and results of the Confocal Laser Scanning Microscopy (CLSM) working group (WG) of the International Committee for Coal and Organic Petrology (ICCP), from its inception in September, 2015, to the present day (September, 2021). The purpose of this report is to document the history of the working group and to compile and evaluate its results. The CLSM WG examined an immature, organic-rich sample of Kimmeridge Clay, which was characterized via CLSM imaging and spectroscopy. In addition, mechanically polished and broad ion beam (BIB) milled sample preparations were characterized via atomic force microscopy. Highlights of findings from the CLSM WG include: the interpreted presence of Botryococcus; incomplete blocking of laser light from highly reflective materials; surface roughening and surface flattening induced by differential BIB milling dependent on location and scale of measurement; substitution of uranium for iron in sulfides; red-shift of reflectance and auto-fluorescence from below the sample surface; positive alteration from laser-induced photo-oxidation of the sample surface including fluorescence blue-shift; blueshift associated to higher fluorescence intensity regions in amorphous organic matter; need for fluorescence spectroscopy standardization as applied via CLSM; and the suitability of CLSM to predict solid bitumen reflectance via calibration to an extant data set. Due to the inability of WG members to continue participating in a WG format, the CLSM WG is hereby finalized. This report represents the final product of WG activity, with the aim to summarize the information included herein for a future peer-reviewed manuscript.

Final Report↗
USGS2004

Identification of spectrally similar materials using the USGS Tetracorder algorithm: The calcite-epidote-chlorite problem

A scheme to discriminate and identify materials having overlapping spectral absorption features has been developed and tested based on the U.S. Geological Survey (USGS) Tetracorder system. The scheme has been applied to remotely sensed imaging spectroscopy data acquired by the Airborne Visible and Infrared Imaging Spectrometer (AVIRIS) instrument. This approach was used to identify the minerals calcite, epidote, and chlorite in the upper Animas River watershed, Colorado. The study was motivated by the need to characterize the distribution of calcite in the watershed and assess its acid-neutralizing potential with regard to acidic mine drainage. Identification of these three minerals is difficult because their diagnostic spectral features are all centered at 2.3 ??m, and have similar shapes and widths. Previous studies overestimated calcite abundance as a result of these spectral overlaps. The use of a reference library containing synthetic mixtures of the three minerals in varying proportions was found to simplify the task of identifying these minerals when used in conjunction with a rule-based expert system. Some inaccuracies in the mineral distribution maps remain, however, due to the influence of a fourth spectral component, sericite, which exhibits spectral absorption features at 2.2 and 2.4 ??m that overlap the 2.3-??m absorption features of the other three minerals. Whereas the endmember minerals calcite, epidote, chlorite, and sericite can be identified by the method presented here, discrepancies occur in areas where all four occur together as intimate mixtures. It is expected that future work will be able to reduce these discrepancies by including reference mixtures containing sericite. ?? 2004 Elsevier Inc. All rights reserved.

Remote Sensing of Environment↗
USGS2017

Solid-phase arsenic speciation in aquifer sediments: A micro-X-ray absorption spectroscopy approach for quantifying trace-level speciation

e of this research is to identify the solid-phase sources and geochemical mechanisms of release of As in aquifers of the Des Moines Lobe glacial advance. The overarching concept is that conditions present at the aquifer-aquitard interfaces promote a suite of geochemical reactions leading to mineral alteration and release of As to groundwater. A microprobe X-ray absorption spectroscopy (lXAS) approach is developed and applied to rotosonic drill core samples to identify the solid-phase speciation of As in aquifer, aquitard, and aquifer-aquitard interface sediments. This approach addresses the low solid-phase As concentrations, as well as the fine-scale physical and chemical heterogeneity of the sediments. The spectroscopy data are analyzed using novel cosine-distance and correlation-distance hierarchical clustering for Fe 1s and As 1s lXAS datasets. The solid-phase Fe and As speciation is then interpreted using sediment and well-water chemical data to propose solid-phase As reservoirs and release mechanisms. The results confirm that in two of the three locations studied, the glacial sediment forming the aquitard is the source of As to the aquifer sediments. The results are consistent with three different As release mechanisms: (1) desorption from Fe (oxyhydr)oxides, (2) reductive dissolution of Fe (oxyhydr)oxides, and (3) oxidative dissolution of Fe sulfides. The findings confirm that glacial sediments at the interface between aquifer and aquitard are geochemically active zones for As. The diversity of As release mechanisms is consistent with the geographic heterogeneity observed in the distribution of elevated-As wells.

Geochimica et Cosmochimica Acta↗
USGS1999

Spectroscopy of rocks and minerals and principles of spectroscopy

Spectroscopy is the study of light as a function of wavelength that has been emitted, reflected or scattered from a solid, liquid, or gas. In this chapter I will primarily discuss the spectroscopy of minerals, but the principles apply to any material. No single chapter can cover this topic adequately, and one could argue, not even a single book. Thus, in some ways, this chapter may fall short of expectations, depending on the reader. In this chapter, I have tried to provide an overview of what is already known, some of which may be covered better in other reviews. I have also tried to present some of the practical lessons of spectroscopy, some of which have been in use by spectroscopists as common knowledge, but have not necessarily been previously published in detail. See Adams (1975), Hunt (1977), Farmer (1974), Hunt (1982); Clark and Roush (1984), Clark et al. (1990a), Gaffey et al . (1993), Salisbury (1993), and references in those papers for more details.

Book chapter↗
USGS2021

Compositional evolution of organic matter in Boquillas Shale across a thermal gradient at the single particle level

The molecular composition of petroliferous organic matter and its compositional evolution throughout thermal maturation provides insight for understanding petroleum generation. This information is critical for understanding hydrocarbon resources in unconventional reservoirs, as source rock organic matter is highly dispersed, in contact with the surrounding mineral matrix, and may occur as multiple organic matter maceral types. Here, Raman spectroscopy and optical microscopy approaches were applied to a marginally mature (vitrinite reflectance ~0.5%) sample of the Late Cretaceous Boquillas Shale before and after hydrous pyrolysis (HP) at 300 °C and 330 °C for 72 h. This analytical approach allowed for correlative examination of micro-scale changes in organic matter compositional properties (e.g., aromaticity) for a variety of organic matter macerals across a thermal gradient (from marginally mature into the late oil/wet gas window) at the single particle level. Results indicate that while the examined amorphous organic matter, solid bitumen, and vitrinite particles exhibit different aromatic signatures in the unheated shale, they effectively progress along a similar trend through composition space with thermal maturation. Examined inertinite fragments were generally insensitive to the applied thermal stress, reinforcing the idea that reservoir temperature may be secondary for dictating the molecular composition of inertinite. Additional analysis of Raman spectra for individual organic matter macerals was performed using multivariate curve resolution (MCR) and correlation of standard Raman and reflectance-derived thermal maturity proxies against MCR parameters shows consistent trends. This trend suggests that MCR may be a fast and statistically robust method for extracting compositional information from Raman spectra of sedimentary organic matter, and can be used to construct thermal maturity relationships. These findings inform our understanding of how different petroliferous organic matter maceral types evolve throughout thermal reactions and further demonstrate that Raman spectroscopy combined with petrographic analysis can provide complementary estimates of organic matter composition and thermal maturity.

International Journal of Coal Geology↗
USGS2026

Release and recapture: Limited carbon mobilization in sediment adjacent to Central Atlantic Magmatic Province sills, Florida, USA

Large Igneous Provinces (LIPs) are associated with dramatic changes to the Earth system; their rapid release of carbon may initiate catastrophic climatic changes causing mass extinction. This carbon release is often associated with volcanic emissions, yet metamorphic carbon production is poorly constrained. Metamorphic carbon devolatilization occurs as intrusions interact with host sediment, potentially releasing substantial sedimentary carbon. While this process has been modeled, few studies use an observational approach. Here, we apply geochemical analysis, petrographic analysis, Raman spectroscopy, vitrinite reflectance, and thermodynamic modeling to understand carbon devolatilization in sediment adjacent to Central Atlantic Magmatic Province basaltic intrusions using two boreholes that penetrate the Florida basement. We find geochemical and petrographic evidence for CO 2 release from carbonates below a 10 m thick sill, with upward fluid transport and recapture of mobilized CO 2 at the top of the sill. Ultimately, we estimate 220 mols/m 2 to 9900 mols/m 2 of carbon were mobilized from sedimentary carbonate. Uncertainties in the extent of re‑carbonation suggest that anywhere from 0 mols/m 2 to 7100 mols/m 2 may have escaped to the surface. We find little evidence of organic carbon mobility, due partly to the increased activity of CO 2 from carbonate devolatilization. Discrepancies between measured temperatures and 1D thermal models suggest complexities in heat transport through aqueous pore fluid flow and short (hundred to thousand year) heating timescales. These results highlight that further field-based study can help clarify the roles that heating timescales, fluid flow, sediment chemistry, and other factors play in releasing and capturing carbon during LIP emplacement.

Florida↗
USGS2017

Pyrogenic carbon distribution in mineral topsoils of the northeastern United States

Due to its slow turnover rates in soil, pyrogenic carbon (PyC) is considered an important C pool and relevant to climate change processes. Therefore, the amounts of soil PyC were compared to environmental covariates over an area of 327,757 km 2 in the northeastern United States in order to understand the controls on PyC distribution over large areas. Topsoil (defined as the soil A horizon, after removal of any organic horizons) samples were collected at 165 field sites in a generalised random tessellation stratified design that corresponded to approximately 1 site per 1600 km 2 and PyC was estimated from diffuse reflectance mid-infrared spectroscopy measurements using a partial least-squares regression analysis in conjunction with a large database of PyC measurements based on a solid-state 13 C nuclear magnetic resonance spectroscopy technique. Three spatial models were applied to the data in order to relate critical environmental covariates to the changes in spatial density of PyC over the landscape. Regional mean density estimates of PyC were 11.0 g kg − 1 (0.84 Gg km − 2 ) for Ordinary Kriging, 25.8 g kg − 1 (12.2 Gg km − 2 ) for Multivariate Linear Regression, and 26.1 g kg − 1 (12.4 Gg km − 2 ) for Bayesian Regression Kriging. Akaike Information Criterion (AIC) indicated that the Multivariate Linear Regression model performed best (AIC = 842.6; n = 165) compared to Ordinary Kriging (AIC = 982.4) and Bayesian Regression Kriging (AIC = 979.2). Soil PyC concentrations correlated well with total soil sulphur (P < 0.001; n = 165), plant tissue lignin (P = 0.003), and drainage class (P = 0.008). This suggests the opportunity of including related environmental parameters in the spatial assessment of PyC in soils. Better estimates of the contribution of PyC to the global carbon cycle will thus also require more accurate assessments of these covariates.

Geoderma↗
USGS2004

Approaches to surface complexation modeling of Uranium(VI) adsorption on aquifer sediments

Uranium(VI) adsorption onto aquifer sediments was studied in batch experiments as a function of pH and U(VI) and dissolved carbonate concentrations in artificial groundwater solutions. The sediments were collected from an alluvial aquifer at a location upgradient of contamination from a former uranium mill operation at Naturita, Colorado (USA). The ranges of aqueous chemical conditions used in the U(VI) adsorption experiments (pH 6.9 to 7.9; U(VI) concentration 2.5 · 10 −8 to 1 · 10 −5 M; partial pressure of carbon dioxide gas 0.05 to 6.8%) were based on the spatial variation in chemical conditions observed in 1999–2000 in the Naturita alluvial aquifer. The major minerals in the sediments were quartz, feldspars, and calcite, with minor amounts of magnetite and clay minerals. Quartz grains commonly exhibited coatings that were greater than 10 nm in thickness and composed of an illite-smectite clay with occluded ferrihydrite and goethite nanoparticles. Chemical extractions of quartz grains removed from the sediments were used to estimate the masses of iron and aluminum present in the coatings. Various surface complexation modeling approaches were compared in terms of the ability to describe the U(VI) experimental data and the data requirements for model application to the sediments. Published models for U(VI) adsorption on reference minerals were applied to predict U(VI) adsorption based on assumptions about the sediment surface composition and physical properties (e.g., surface area and electrical double layer). Predictions from these models were highly variable, with results overpredicting or underpredicting the experimental data, depending on the assumptions used to apply the model. Although the models for reference minerals are supported by detailed experimental studies (and in ideal cases, surface spectroscopy), the results suggest that errors are caused in applying the models directly to the sediments by uncertain knowledge of: 1) the proportion and types of surface functional groups available for adsorption in the surface coatings; 2) the electric field at the mineral-water interface; and 3) surface reactions of major ions in the aqueous phase, such as Ca 2+ , Mg 2+ , HCO 3 − , SO 4 2− , H 4 SiO 4 , and organic acids. In contrast, a semi-empirical surface complexation modeling approach can be used to describe the U(VI) experimental data more precisely as a function of aqueous chemical conditions. This approach is useful as a tool to describe the variation in U(VI) retardation as a function of chemical conditions in field-scale reactive transport simulations, and the approach can be used at other field sites. However, the semi-empirical approach is limited by the site-specific nature of the model parameters.

Geochimica et Cosmochimica Acta↗
USGS2012

Improving the accuracy of S0 2 column densities and emission rates obtained from upward-looking UV-spectroscopic measurements of volcanic plumes by taking realistic radiative transfer into account

Sulfur dioxide (SO 2 ) is monitored using ultraviolet (UV) absorption spectroscopy at numerous volcanoes around the world due to its importance as a measure of volcanic activity and a tracer for other gaseous species. Recent studies have shown that failure to take realistic radiative transfer into account during the spectral retrieval of the collected data often leads to large errors in the calculated emission rates. Here, the framework for a new evaluation method which couples a radiative transfer model to the spectral retrieval is described. In it, absorption spectra are simulated, and atmospheric parameters are iteratively updated in the model until a best match to the measurement data is achieved. The evaluation algorithm is applied to two example Differential Optical Absorption Spectroscopy (DOAS) measurements conducted at Kilauea volcano (Hawaii). The resulting emission rates were 20 and 90% higher than those obtained with a conventional DOAS retrieval performed between 305 and 315 nm, respectively, depending on the different SO 2 and aerosol loads present in the volcanic plume. The internal consistency of the method was validated by measuring and modeling SO2 absorption features in a separate wavelength region around 375 nm and comparing the results. Although additional information about the measurement geometry and atmospheric conditions is needed in addition to the acquired spectral data, this method for the first time provides a means of taking realistic three-dimensional radiative transfer into account when analyzing UV-spectral absorption measurements of volcanic SO 2 plumes.

Journal of Geophysical Research D: Atmospheres↗
USGS2016

Developing integrated methods to address complex resource and environmental issues

Introduction This circular provides an overview of selected activities that were conducted within the U.S. Geological Survey (USGS) Integrated Methods Development Project, an interdisciplinary project designed to develop new tools and conduct innovative research requiring integration of geologic, geophysical, geochemical, and remote-sensing expertise. The project was supported by the USGS Mineral Resources Program, and its products and acquired capabilities have broad applications to missions throughout the USGS and beyond. In addressing challenges associated with understanding the location, quantity, and quality of mineral resources, and in investigating the potential environmental consequences of resource development, a number of field and laboratory capabilities and interpretative methodologies evolved from the project that have applications to traditional resource studies as well as to studies related to ecosystem health, human health, disaster and hazard assessment, and planetary science. New or improved tools and research findings developed within the project have been applied to other projects and activities. Specifically, geophysical equipment and techniques have been applied to a variety of traditional and nontraditional mineral- and energy-resource studies, military applications, environmental investigations, and applied research activities that involve climate change, mapping techniques, and monitoring capabilities. Diverse applied geochemistry activities provide a process-level understanding of the mobility, chemical speciation, and bioavailability of elements, particularly metals and metalloids, in a variety of environmental settings. Imaging spectroscopy capabilities maintained and developed within the project have been applied to traditional resource studies as well as to studies related to ecosystem health, human health, disaster assessment, and planetary science. Brief descriptions of capabilities and laboratory facilities and summaries of some applications of project products and research findings are included in this circular. The work helped support the USGS mission to “provide reliable scientific information to describe and understand the Earth; minimize loss of life and property from natural disasters; manage water, biological, energy, and mineral resources; and enhance and protect our quality of life.” Activities within the project include the following: Spanned scales from microscopic to planetary; Demonstrated broad applications across disciplines; Included life-cycle studies of mineral resources; Incorporated specialized areas of expertise in applied geochemistry including mineralogy, hydrogeology, analytical chemistry, aqueous geochemistry, biogeochemistry, microbiology, aquatic toxicology, and public health; and Incorporated specialized areas of expertise in geophysics including magnetics, gravity, radiometrics, electromagnetics, seismic, ground-penetrating radar, borehole radar, and imaging spectroscopy. This circular consists of eight sections that contain summaries of various activities under the project. The eight sections are listed below: Laboratory Facilities and Capabilities, which includes brief descriptions of the various types of laboratories and capabilities used for the project; Method and Software Development, which includes summaries of remote-sensing, geophysical, and mineralogical methods developed or enhanced by the project; Instrument Development, which includes descriptions of geophysical instruments developed under the project; Minerals, Energy, and Climate, which includes summaries of research that applies to mineral or energy resources, environmental processes and monitoring, and carbon sequestration by earth materials; Element Cycling, Toxicity, and Health, which includes summaries of several process-oriented geochemical and biogeochemical studies and health-related research activities; Hydrogeology and Water Quality, which includes descriptions of innovative geophysical, remote-sensing, and geochemical research pertaining to hydrogeology and water-quality applications; Hazards and Disaster Assessment, which includes summaries of research and method development that were applied to natural hazards, human-caused hazards, and disaster assessments; and Databases and Framework Studies, which includes descriptions of fundamental applications of geophysical studies and of the importance of archived data.

Circular↗
USGS2011

Evaluating the potential for remote bathymetric mapping of a turbid, sand-bed river: 1. Field spectroscopy and radiative transfer modeling

Remote sensing offers an efficient means of mapping bathymetry in river systems, but this approach has been applied primarily to clear-flowing, gravel bed streams. This study used field spectroscopy and radiative transfer modeling to assess the feasibility of spectrally based depth retrieval in a sand-bed river with a higher suspended sediment concentration (SSC) and greater water turbidity. Attenuation of light within the water column was characterized by measuring the amount of downwelling radiant energy at different depths and calculating a diffuse attenuation coefficient, K d . Attenuation was strongest in blue and near-infrared bands due to scattering by suspended sediment and absorption by water, respectively. Even for red wavelengths with the lowest values of K d , only a small fraction of the incident light propagated to the bed, restricting the range of depths amenable to remote sensing. Spectra recorded above the water surface were used to establish a strong, linear relationship ( R 2 = 0.949) between flow depth and a simple band ratio; even under moderately turbid conditions, depth remained the primary control on reflectance. Constraints on depth retrieval were examined via numerical modeling of radiative transfer within the atmosphere and water column. SSC and sensor radiometric resolution limited both the maximum detectable depth and the precision of image-derived depth estimates. Thus, although field spectra indicated that the bathymetry of turbid channels could be remotely mapped, model results implied that depth retrieval in sediment-laden rivers would be limited to shallow depths (on the order of 0.5 m) and subject to a significant degree of uncertainty.

Water Resources Research↗
USGS2021

A review of spatially resolved techniques and applications of organic petrography in shale petroleum systems

This review examines new techniques and applications of organic petrography in source-rock reservoir petroleum systems that have occurred along with development of the global ‘shale revolution’ in energy resources. The review is limited to techniques and instrumentation that provide spatially resolved information, typically at or below microscales, for dispersed organic matter occurring in situ in samples of shale and mudrock. A brief summary of ion beam sample preparation is followed by discussion of the most common analytical techniques and applications. Advantages and limitations of each technique, including requisite sample preparation, types of information generated [e.g., molecular or elemental (isotopic) abundance], sensitivity, and resolution are discussed. In a few cases, techniques not yet applied to organic petrology of shale or mudrock are described (e.g., X-ray photoelectron spectroscopy imaging), in anticipation of near-term future application. The most common in situ techniques applied for characterization of organic matter in shale and mudrock include optical (including fluorescence) and electron microscopies, Raman, fluorescence, and infrared spectroscopies, and surficial measurements via force microscopy. Techniques that show growing application to organic petrography of shale include tip-enhanced photothermal infrared spectroscopy, mass spectrometry imaging, and synchrotron-based spectroscopies, among others. It is anticipated that the future of dispersed organic matter petrography will hold continued development of integrated instrument techniques (e.g., simultaneous or sequential correlative microscopies and/or spectroscopies of the same location), increased instrumental resolution, increased use of multiscale and multimodal organic petrography investigations, and three-dimensional imaging and chemical speciation mapping applications via multiple analytical approaches.

International Journal of Coal Geology↗
USGS2003

Mercury Speciation by X-ray Absorption Fine Structure Spectroscopy and Sequential Chemical Extractions: A Comparison of Speciation Methods

Determining the chemical speciation of mercury in contaminated mining and industrial environments is essential for predicting its solubility, transport behavior, and potential bioavailability as well as for designing effective remediation strategies. In this study, two techniques for determining Hg speciation-X-ray absorption fine structure (XAFS) spectroscopy and sequential chemical extractions (SCE)-are independently applied to a set of samples with Hg concentrations ranging from 132 to 7539 mg/kg to determine if the two techniques provide comparable Hg speciation results. Generally, the proportions of insoluble HgS (cinnabar, metacinnabar) and HgSe identified by XAFS correlate well with the proportion of Hg removed in the aqua regia extraction demonstrated to remove HgS and HgSe. Statistically significant (> 10%) differences are observed however in samples containing more soluble Hg-containing phases (HgCl2, HgO, Hg3S2O 4). Such differences may be related to matrix, particle size, or crystallinity effects, which could affect the apparent solubility of Hg phases present. In more highly concentrated samples, microscopy techniques can help characterize the Hg-bearing species in complex multiphase natural samples.

Environmental Science & Technology↗
USGS2025

Crustal to mantle melt storage during the evolution of Hawaiian volcanoes

As the Pacific Plate migrates over the mantle plume below Hawaiʻi, magma flux decreases, resulting in changes in eruptive volume, style, and composition. It is thought that melt storage becomes deeper and ephemeral with the transition from highly voluminous tholeiitic (shield stage) to the less voluminous alkaline (post-shield and rejuvenation stages) magmatism. To quantitatively test this, we applied high-precision fluid inclusion barometry via Raman spectroscopy to samples from representative volcanoes of different evolutionary stages. This suggests an evolution from shield-stage shallow magma storage (~1 to 2 kilometers) for Kīlauea to a post-shield stage that includes crustal magma storage within the volcanic edifice (~2 kilometers) and deeper storage below the Moho (~20 to 27 kilometers) for Haleakalā. The rejuvenation stage (Diamond Head) displays mantle-dominated storage (~22 to 30 kilometers). High melt fluxes likely form stable conduits from the mantle to a shallow reservoir in the shield volcanoes. As melt flux decreases, the Moho becomes the boundary controlling melt stagnation and evolution.

Hawaii↗
USGS2011

Hapke modeling of Rhea surface properties through Cassini-VIMS spectra

T The surface properties of the icy bodies in the saturnian system have been investigated by means of the Cassini-VIMS (Visual Infrared Mapping Spectrometer) hyperspectral imager which operates in the 0.35–5.1 μm wavelength range. In particular, we have analyzed 111 full disk hyperspectral images of Rhea ranging in solar phase between 0.08° and 109.8°. These data have been previously analyzed by Filacchione et al. (Filacchione, G. et al. [2007]. Icarus 186, 259–290; Filacchione, G. et al. [2010]. Icarus 206, 507–523) to study, adopting various “spectral indicators” (such as spectral slopes, band depth, and continuum level), the relations among various saturnian satellites. As a further step we proceed in this paper to a quantitative evaluation of the physical parameters determining the spectrophotometric properties of Rhea’s surface. To do this we have applied Hapke (Hapke, B. [1993]. Theory of Reflectance and Emittance Spectroscopy, Topics in Remote Sensing: 3. Springer, Berlin) IMSA model (Isotropic Multiple Scattering Approximation) which allow us to model the phase function at VIS–IR (visible–infrared) wavelengths as well as the spectra taking into account various types of mixtures of surface materials. Thanks to this method we have been able to constrain the size of water ice particles covering the surface, the amount of organic contaminants, the large scale surface roughness and the opposition effect surge. From our analysis it appears that wavelength dependent parameters, e.g. opposition surge width ( h ) and single-particle phase function parameters ( b , v ), are strongly correlated to the estimated single-scattering albedo of particles. For Rhea the best fit solution is obtained by assuming: (1) an intraparticle mixture of crystalline water ice and a small amount (0.4%) of Triton tholin; (2) a monodisperse grain size distribution having a particle diameter a m = 38 μm; and (3) a surface roughness parameter value of 33°. The study of phase function shows that both shadow hiding and coherent backscattering contribute to the opposition surge. This study represents the first attempt, in the case of Rhea, to join the spectral and the photometric analysis. The surface model we derived gives a good quantitative description of both spectrum and phase curve of the satellite. The same approach and model, with appropriate modifications, shall be applied to VIMS data of the other icy satellites of Saturn, in order to reveal similarities and differences in the surface characteristics to understand how these bodies interact with their environment.

Icarus↗
USGS2020

Mineralogy and lithology of the Upper Cretaceous Niobrara Formation determined by hyperspectral core imaging

Sections of the Upper Cretaceous (Coniacian to Campanian) Niobrara Formation in two cores from Kansas and Colorado, the Amoco Rebecca Bounds and USGS Portland 1, respectively, were examined by hyperspectral core imaging and analysis. A spectral imaging system combining high-resolution photography (50 μm), 3D laser profiling (20 μm), and near-visible + short-wave infrared reflectance spectroscopy (wavelengths from 450 to 2500 nm, 500 μm pixel size) was applied to these cores to provide spectral and textural data facilitating creation of continuous mineral and lithology class maps. In addition, compositing of pixel-based results to group pixels to create mineralogical and lithological logs (0.5 ft resolution) was performed to facilitate comparisons to other geochemical datasets. The results show general correspondence in trends identified by previous geochemistry studies, with some exceptions due to instrumental limitations related to low reflectance of some rock intervals and the limited range of infrared wavelengths examined. This study provides a cursory overview of an extensive dataset meant to demonstrate the utility of hyperspectral core scanning to studies of mudrocks in petroleum systems as well as the kinds of information this technique can provide for detailed examination of stratigraphic features in sedimentary systems more generally.

Mountain Geologist↗
USGS2010

Linking microbial and ecosystem ecology using ecological stoichiometry: a synthesis of conceptual and empirical approaches

Currently, one of the biggest challenges in microbial and ecosystem ecology is to develop conceptual models that organize the growing body of information on environmental microbiology into a clear mechanistic framework with a direct link to ecosystem processes. Doing so will enable development of testable hypotheses to better direct future research and increase understanding of key constraints on biogeochemical networks. Although the understanding of phenotypic and genotypic diversity of microorganisms in the environment is rapidly accumulating, how controls on microbial physiology ultimately affect biogeochemical fluxes remains poorly understood. We propose that insight into constraints on biogeochemical cycles can be achieved by a more rigorous evaluation of microbial community biomass composition within the context of ecological stoichiometry. Multiple recent studies have pointed to microbial biomass stoichiometry as an important determinant of when microorganisms retain or recycle mineral nutrients. We identify the relevant cellular components that most likely drive changes in microbial biomass stoichiometry by defining a conceptual model rooted in ecological stoichiometry. More importantly, we show how X-ray microanalysis (XRMA), nanoscale secondary ion mass spectroscopy (NanoSIMS), Raman microspectroscopy, and in situ hybridization techniques (for example, FISH) can be applied in concert to allow for direct empirical evaluation of the proposed conceptual framework. This approach links an important piece of the ecological literature, ecological stoichiometry, with the molecular front of the microbial revolution, in an attempt to provide new insight into how microbial physiology could constrain ecosystem processes.

Ecosystems↗
USGS2018

Spatial spectroscopic models for remote exploration

Ancient hydrothermal systems are a high-priority target for a future Mars sample return mission because they contain energy sources for microbes and can preserve organic materials (Farmer, 2000 ; MEPAG Next Decade Science Analysis Group, 2008 ; McLennan et al., 2012 ; Michalski et al., 2017 ). Characterizing these large, heterogeneous systems with a remote explorer is difficult due to communications bandwidth and latency; such a mission will require significant advances in spacecraft autonomy. Science autonomy uses intelligent sensor platforms that analyze data in real-time, setting measurement and downlink priorities to provide the best information toward investigation goals. Such automation must relate abstract science hypotheses to the measurable quantities available to the robot. This study captures these relationships by formalizing traditional “science traceability matrices” into probabilistic models. This permits experimental design techniques to optimize future measurements and maximize information value toward the investigation objectives, directing remote explorers that respond appropriately to new data. Such models are a rich new language for commanding informed robotic decision making in physically grounded terms. We apply these models to quantify the information content of different rover traverses providing profiling spectroscopy of Cuprite Hills, Nevada. We also develop two methods of representing spatial correlations using human-defined maps and remote sensing data. Model unit classifications are broadly consistent with prior maps of the site's alteration mineralogy, indicating that the model has successfully represented critical spatial and mineralogical relationships at Cuprite. Key Words: Autonomous science—Imaging spectroscopy—Alteration mineralogy—Field geology—Cuprite—AVIRIS-NG—Robotic exploration. Astrobiology 18, 934–954.

Astrobiology↗