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Proceedings of the 2024 Asia-Pacific Wildlife Health Workshop—Collaborating against shared threats

Emerging diseases of wildlife origin are increasingly transboundary (they spread rapidly across geographic regions and across continents). In recent years, examples include the rapid spread of African swine fever across Europe and Asia with negative effects on food security, and the near global spread of highly pathogenic avian influenza which has devastated wildlife populations, caused economic harm, and which threatens public health; consequently, international partnerships and networks are essential to facilitate the sharing of information for improved situational awareness and better preparedness and response. In this regard, the U.S. Geological Survey and the Korea National Institute for Wildlife Disease Control and Prevention have had a long-standing partnership to foster scientific collaboration. A key part of the activities has been annual scientific workshops, which commenced in 2016. The 2024 workshop in Hilo, Hawaii, was the most recent in these series of workshops and included participants from across Asia and the Pacific region, including Thailand, Vietnam, China, Republic of Korea, Japan, Australia, Cook Islands, Fiji, and the United States. The goals of the workshop were: to continue to build the wildlife health community of practice in the Asia-Pacific region and expand the participants to agencies and institutions from other countries in the region; and exchange scientific knowledge among the participants to share best practices, create scientific networks, and build capacity in wildlife health science for the Asia-Pacific region. The themes discussed at the workshop included wildlife health risk management, avian Influenza, African swine fever, climate change and emerging diseases, and international cooperation. This report contains the author-submitted abstracts which provide a summary of the presentations and discussions during the workshop. The aim is to share this information to continue to foster international scientific exchange to protect wildlife health, livestock, and public health from the negative impacts of infectious and noninfectious diseases.

Open-File Report

Geologic field trip guide to Mount Mazama and Crater Lake Caldera, Oregon

Crater Lake partly fills one of the most spectacular calderas of the world—an 8 by 10 kilometer (km) basin more than 1 km deep formed by collapse of the Mount Mazama volcano during a rapid series of explosive eruptions ~7,700 years ago. Having a maximum depth of 594 meters (m), Crater Lake is the deepest lake in the United States. Crater Lake National Park, dedicated in 1902, encompasses 645 square kilometers (km 2 ) of pristine forested and alpine terrain, including the lake itself, and virtually all of Mount Mazama. The geology of the area was first described in detail by Diller and Patton (1902) and later by Williams (1942), whose vivid account led to international recognition of Crater Lake as the classic collapse caldera. Because of excellent preservation and access, Mount Mazama, Crater Lake caldera, and the deposits formed by the climactic eruption constitute a natural laboratory for study of volcanic and magmatic processes. For example, the climactic ejecta are renowned among volcanologists as evidence for systematic compositional zonation within a subterranean magma chamber. Mount Mazama’s climactic eruption also is important as the source of the widespread Mazama ash, a useful Holocene stratigraphic marker throughout the Pacific Northwest United States, adjacent Canada, and offshore. A detailed bathymetric survey of the floor of Crater Lake in 2000 (Bacon and others, 2002) provides a unique record of postcaldera eruptions, the interplay between volcanism and filling of the lake, and sediment transport within this closed basin. Knowledge of the geology and eruptive history of the Mount Mazama edifice, enhanced by the caldera wall exposures, gives exceptional insight into how large volcanoes of magmatic arcs grow and evolve. In addition, many smaller volcanoes of the High Cascades beyond the limits of Mount Mazama provide information on the flux of mantle-derived magma through the region. General principles of magmatic and eruptive processes revealed by geologic research at Crater Lake have been incorporated not only in scientific investigations elsewhere, but also in the practical evaluation of local hazards (Bacon and others, 1997b) and geothermal resources (Bacon and Nathenson, 1996). The 1:24,000-scale geologic map of Mount Mazama and Crater Lake caldera (Bacon, 2008) is unusual because it portrays bedrock (outcrop), surficial, and lake floor geology. Caldera wall geology is depicted in detail on the accompanying geologic panoramas, and bedrock geology is shown in a 1:50,000-scale geologic map. This field guide supersedes earlier geology guides of Crater Lake (Bacon, 1987, 1989).

Oregon

Rapid Source Characterization of the 2011 Mw 9.0 off the Pacific coast of Tohoku Earthquake

On March 11th, 2011, a moment magnitude 9.0 earthquake struck off the coast of northeast Honshu, Japan, generating what may well turn out to be the most costly natural disaster ever. In the hours following the event, the U.S. Geological Survey National Earthquake Information Center led a rapid response to characterize the earthquake in terms of its location, size, faulting source, shaking and slip distributions, and population exposure, in order to place the disaster in a framework necessary for timely humanitarian response. As part of this effort, fast finite-fault inversions using globally distributed body- and surface-wave data were used to estimate the slip distribution of the earthquake rupture. Models generated within 7 hours of the earthquake origin time indicated that the event ruptured a fault up to 300 km long, roughly centered on the earthquake hypocenter, and involved peak slips of 20 m or more. Updates since this preliminary solution improve the details of this inversion solution and thus our understanding of the rupture process. However, significant observations such as the up-dip nature of rupture propagation and the along-strike length of faulting did not significantly change, demonstrating the usefulness of rapid source characterization for understanding the first order characteristics of major earthquakes.

Tohoku, Honshu

Submarine ground water discharge and fate along the coast of Kaloko-Honokohau National Historical Park, Hawaii Part I: Time-series measurements of currents, waves, salinity and temperature: November 2005 – July 2006

The impending development for the west Hawai‘i coastline adjacent to Kaloko-Honokōhau National Historical Park (KAHO) may potentially alter coastal hydrology and water quality in the marine waters of the park. Water resources are perhaps the most significant natural and cultural resource component in the park, and are critical to the health and well being of six federally listed species. KAHO contains ecosystems of brackish anchialine pools, two 11-acre fishponds, and 596 acres of coral reef habitats, all fed by groundwater originating upslope. The steep gradients on high islands, combined with typically porous substrates and high rainfall levels at upper elevations, make these settings especially vulnerable to shifts in submarine groundwater discharge (SGD) and its entrained nutrients and pollutants. Little is known about the magnitude, rate, frequency, and variability of SGD and its influence on contaminant loading to Hawaiian coastal environments. Recent studies show that groundwater flux through the park is vital to many ecosystem components including anchialine ponds and wetland biota. The function of these ecosystems may be vulnerable to changes in groundwater flow stemming from natural changes (climate and sea level) and land use (groundwater pumping and contamination). Oki and others (1999) showed that increased groundwater withdrawals for urban development since 1978 likely decreased groundwater flux to the coast by 50%. During this same time, the quality of groundwater has been vulnerable to increases in contaminant and nutrient/fertilizer additions associated with industrial, commercial and residential use upslope from KAHO (Oki and others, 1999). High-resolution measurements of waves, currents, water levels, temperature and salinity were collected in the marine portion of the park from November, 2005, through July, 2006, to establish baseline information on the magnitude, rate, frequency, and variability of SGD. These data are intended to help researchers and resource managers better understand the hydrodynamics of the oceanographic environment in the park’s coastal waters as it pertains to the pathway of SGD and associated nutrient and contaminant input to the park’s coral reef ecosystem. Measurements were made of the oceanographic environment (waves, tides, currents, salinity and temperature) using hydrodynamic techniques to characterize and quantify the distribution, input and throughput of freshwater and associated nutrient/contaminant within the near shore environment of KAHO through the emplacement of a series of bottom-mounted instruments deployed in water depths less than 15 m. This study was conducted in support of the National Park Service (NPS) by the U.S. Geological Survey (USGS) Coastal and Marine Geology Program’s Coral Reef Project. These measurements support the ongoing studies of the Coral Reef Project to better understand the transport mechanisms of sediment, larvae, nutrients, pollutants and other particles on Pacific coral reefs. Subsequent reports will address the spatial and temporal variability in groundwater input and the associated nutrient flux in the park’s waters.

Hawai'i

Water levels in observation wells in Santa Barbara County, California, in 1961

Investigation of the ground-water resources of Santa Barbara County was continued during 1961 by the U. S. Geological Survey in cooperation with the Santa Barbara County Water Agency. Monthly water-level measurements were made in 190 wells, in 9 of which automatic water-level recorders were operated. Earlier measurements, covering the period 1941 through 1955, have been published in U. S. Geological Survey Water-Supply Papers (1943-1957); those for 1956 through 1960 have been released locally in duplicated form (Muir and Merritt, 1957; Evenson, 1958; Miller, 1959; Muir, Merritt, and Miller, 1960; and Merritt, 1961). LaRocque, Jr., and others (1950) contains tabulated descriptions of 2,246 wells in existence in 1942 in the several ground-water basins of the county. The same publication also contains many water-level measurements made prior to 1942 by the city of Santa Barbara, Santa Maria Valley Water Conservation District, San Joaquin Power Division of the Pacific Gas and Electric Co., Union Sugar Co., Union Oil Co., and other organizations and individuals. Comprehensive reports on the geology and ground-water resources of the Santa Ynez River basin (Upson and Thomasson, 1951, and Wilson, 1959), the south-coast basins (Upson, 1951), the Santa Maria Valley area (Worts, 1951), and the Cuyama Valley (Upson and Worts, 1951) have been published as Water-Supply Papers 1107, 1467, 1108, 1000, and 1110-B, respectively. A similar report on the San Antonio Creek Valley is in preparation. A report on stream runoff and ground-water storage capacity of the Santa Ynez River valley (Troxell and Wilson, 1952) was released to the open file on October 1952. In addition to the water-level measurements made by the Geological Survey in 1961, measurements made by the Santa Maria Valley Water Conservation District are included in this report. Not included in this report are miscellaneous measurements made by the U. S. Bureau of Reclamation in wells along the middle reach of the Santa Ynez River between Cachuma Dam and Rucker Crossing.

California

Geologic map of the Wrangell-Saint Elias National Park and Preserve, Alaska

Wrangell-Saint Elias National Park and Preserve, the largest national park within the U.S. National Park Service system, extends from the northern Pacific Ocean to beyond the eastern Alaska Range into interior Alaska. It features impressively spectacular scenery such as high and craggy mountains, active and ancient volcanoes, expansive ice fields, immense tidewater glaciers, and a myriad of alpine glaciers. The park also includes the famous Kennecott Mine, a world-class copper deposit that was mined from 1911 to 1938, and remnant ghost town, which is now a National Historic Landmark. Geologic investigations encompassing Wrangell-Saint Elias National Park and Preserve began in 1796, with Dmitriv Tarkhanov, a Russian mining engineer, who unsuccessfully ventured up the Copper River in search of rumored copper. Lieutenant H.T. Allen (1897) of the U.S. Army made a successful epic summer journey with a limited military crew up the Copper River in 1885, across the Alaska Range, and down the Tanana and Yukon Rivers. Allen?s crew was supported by a prospector named John Bremner and local Eyak and Ahtna native guides whose tribes controlled access into the Copper River basin. Allen witnessed the Ahtnas? many uses of the native copper. His stories about the copper prompted prospectors to return to this area in search of the rich copper ore in the years following his journey. The region boasts a rich mining and exploration history prior to becoming a park in 1980. Several U.S. Geological Survey geologists have conducted reconnaissance surveys in the area since Allen?s explorations. This map is the result of their work and is enhanced by more detailed investigations, which began in the late 1950s and are still continuing. For a better understanding of the processes that have shaped the geology of the park and a history of the geologic investigations in the area, we recommend U.S. Geological Survey Professional Paper 1616, ?A Geologic Guide to Wrangell-Saint Elias National Park and Preserve, Alaska,? an exceptionally well illustrated and informative book by Gary R. Winkler, 2000. Geologically, the park consists of a collage of seven tectonostratigraphic terranes that formed south in the equatorial Pacific Ocean and rafted northward on oceanic plates, eventually accreting to Alaska and the North American continent. Each terrane features a distinct stratigraphy and is separated from neighboring terranes by major strike-slip or thrust faults.

Alaska

NW CSC annual report fiscal year 2013

The Northwest Climate Science Center (NW CSC) was established in 2010 as one of eight regional Climate Science Centers created by the Department of the Interior (DOI). The NW CSC encompasses Washing-ton, Oregon, Idaho, and western Montana and has overlapping boundaries with three Landscape Conservation Cooperatives (LCCs): the Great Northern, the Great Basin, and the North Pacific. With guidance from its Executive Stakeholder Advisory Committee (ESAC), the NW CSC and its partner LCCs are addressing the highest priority regional climate science needs of Northwest natural and cultural resource managers. Climate Science Centers tap into the scientific expertise of both the U.S. Geological Survey (USGS) and academic institutions. The NW CSC is supported by an academic consortium with the capacity to generate climate science and tools in a coordinated fashion, serving stakeholders across the Northwest region. This consortium is primarily represented by Oregon State University (OSU), the University of Id-ho (UI), and the University of Washington (UW). The academic consortium and USGS provide capabilities in climate science, ecology, impacts and vulnerability assessment, modeling, adaptation planning, and advanced information technology, all necessary to address and respond to climate change in the Northwest. University members also recruit and train graduate students and early-career scientists. This Annual Report summarizes progress for the goals set out in the NW CSC Strategic Plan for 2012-2015 (http://www.doi.gov/csc/northwest/upload/Northwest-CSC-Strategic-Plan.cfm) and the NW CSC Work-plan for Fiscal Year (FY) 2013 (October 1, 2012 through September 30, 2013). The report follows the structure of the Strategic Plan, which describes the five core services (Executive, Science, Data, Communications, and Education and Training) provided by the NW CSC in support of the stated vision: Our Vision: To become nationally recognized as a best-practice model for the provision of climate science and decision support tools to address conservation and management issues in the Pacific Northwest Region.

Report

Tectonic creep in the Hayward fault zone, California

Tectonic creep is slight apparently continuous movement along a fault. Evidence of creep has been noted at several places within the Hayward fault zone--a zone trending northwestward near the western front of the hills bordering the east side of San Francisco Bay. D. H. Radbruch of the Geological Survey and B. J. Lennert, consulting engineer, confirmed a reported cracking of a culvert under the University of California stadium. F. B. Blanchard and C. L. Laverty of the East Bay Municipal Utility District of Oakland studied cracks in the Claremont water tunnel in Berkeley. M. G. Bonilla of the Geological Survey noted deformation of railroad tracks in the Niles district of Fremont. Six sets of tracks have been bent and shifted. L. S. Cluff of Woodward-Clyde-Sherard and Associates and K. V. Steinbrugge of the Pacific Fire Rating Bureau noted that the concrete walls of a warehouse in the Irvington district of Fremont have been bent and broken, and the columns forced out of line. All the deformations noted have been right lateral and range from about 2 inches in the Claremont tunnel to about 8 inches on the railroad tracks. Tectonic creep almost certainly will continue to damage buildings, tunnels, and other structures that cross the narrow bands of active movement within the Hayward fault zone.

Circular

Impacts of periodic dredging on macroinvertebrate prey availability for benthic foraging fishes in central San Francisco Bay, California

Background Because of its importance for species covered under Federal Fishery Management Plans (FMPs), the San Francisco Bay (SFB) estuary has been designated as Essential Fish Habitat (EFH) under the Magnuson-Stevens Fishery Conservation and Management Act (MSA; 16 United States Code §18559b). Within this estuary, benthic macroinvertebrate communities provide important prey resources for many economically significant fish species that rely on EFH. Periodic maintenance dredging can impact benthic communities; however, there is a lack of scientific information specific to SFB regarding dredging effects on macroinvertebrates in fish foraging areas. In addition, rates of benthic community recolonization and recovery following dredging and subsequent effects on foraging fish are unknown. For this reason, it is difficult for regulatory and resource agencies to determine the impacts of maintenance dredging. Thus, the National Marine Fisheries Service (NMFS) and the consortium of agencies (U.S. Environmental Protection Agency [EPA], U.S. Army Corp of Engineers [USACE], San Francisco Regional Water Quality Control Board [SFRWQCB], and San Francisco Bay Conservation and Development Commission [BCDC]) that make up the San Francisco Bay Long Term Management Strategy for Dredging (LTMS) identified a study of dredging impacts on SFB fish foraging habitat as one of their highest priorities in their 2011 Programmatic EFH Agreement (U.S. Army Corp of Engineers and U.S. Environmental Protection Agency, 2011). The LTMS agencies identified the region of interest as shallow (<13 feet [<4 meters (m)] mean lower low water [MLLW]), soft-bottom (silt/clay soil texture) areas in the Central Bay of SFB that were periodically dredged (every 1–3 years). Fish species of interest were compiled by NMFS and included those managed by the Pacific Groundfish, Pacific Salmon, and Coastal Pelagic FMPs (pursuant to the MSA) as well as those listed under the California State or Federal Endangered Species Act (ESA; 16 U.S.C. §1531–1544) as threatened or endangered. Target species included leopard shark ( Triakis semifasciata ), big skate ( Raja binoculata ), English sole ( Parophrys vetulus ), starry flounder ( Platichthys stellatus) , brown rockfish ( Sebastes auriculatus ), green sturgeon ( Acipenser medirostris ; threatened species under Federal ESA), northern anchovy ( Engraulis mordax ), longfin smelt ( Spirinchus thaleichthys, threatened under California ESA), and Pacific sardine ( Sardinops sagax ). In addition, Dungeness crab ( Cancer magister ), California halibut ( Paralichthys californicus ), and white sturgeon ( Acipenser transmontanus ) also were included because they are substantial contributors to the California State fishery. To address LTMS priorities, U.S. Geological Survey, Western Ecological Research Center, San Francisco Bay Estuary Field Station (hereafter USGS) conducted a multi-phased project including an initial literature review, study design, pilot study, and implementation of a full study. The overarching goal was to assess the effects of periodic dredge operations (every 1–3 years) on benthic habitat for foraging fish in the Central Bay, with emphasis on the foraging requirements of target fish species and analyses of benthic macroinvertebrates in dredged areas compared to adjacent undredged reference areas. The USGS partnered with University of California, Davis, fisheries expert James Hobbs to synthesize existing knowledge of fish foraging ecology and review benthic infauna community composition in SFB with a focus on the Central Bay. The literature review (Phase I; De La Cruz and others, 2016) addressed key questions identified by the LTMS on benthic foraging fish in the study area, including the following: (1) What are target fish eating? (2) What are the seasonal differences in prey items and macroinvertebrate assemblages? (3) What are the annual differences in prey items and macroinvertebrate assemblages? (4) What are the predominant macroinvertebrate functional groups from the perspective of fish foraging? Phase II consisted of creating a framework for a functional assessment of maintenance dredging effects on foraging fish and drafting a full study design (De La Cruz and others, 2017), which was then tested in the Phase III pilot study. The Phase IV full study incorporated lessons learned from the pilot study. Here we focus on the results of the full study and implications for benthic foraging fishes.

California

Preliminary geologic map of the Dengate quadrangle, Morton County, North Dakota

The Dengate quadrangle is an area of approximately 51 square miles in western Morton County, southwestern North Dakota. The quadrangle is about 40 miles west of Bismarck, the State capitol (fig. 1) and about 3.5 miles east of Glen Ullin (population 1,087). Interstate Highway 94,U.S. Highway 10, and the Northern Pacific Railroad cross the northern part of the area in an east-west direction. The Dengate quadrangle is one of a group of 14 adjoining 71/2-minute quadrangles (fig. 1) that are being mapped by the U.S. Geological Survey to furnish a basis for classification of lands withdrawn by the Federal Government pending classification for coal, and to contribute to the geologic map atlas of the United States. Most of the fieldwork for the Dengate quadrangle was done during the late summers and early autumns of 1965 and 1966. During the summer of 1966, the U.S. Geological Survey conducted a drilling program in the Dengate and nearby quadrangles (Smith, 1970) to gather information on the existence, thickness, and depth of lignite beds in withdrawn Federal lands. Two of the holes drilled are in the Dengate quadrangle.

North Dakota

Manual del McVCO 1999

El McVCO es un generador de frecuencias basado en un microcontrolador que reemplaza al oscilador controlado por voltaje (VCO) utilizado en telemetría analógica de datos sísmicas. Acepta señales de baja potencia desde un sismómetro y produce una señal subportadora modulada en frecuencia adecuada para enlaces telefónicos o vía radio a un lugar remoto de recolección de datos. La frecuencia de la subportadora y la ganancia pueden ser seleccionadas mediante un interruptor. Tiene la opción de poder operar con dos canales para la observación con ganancia alta y baja. El McVCO fue diseñado con el propósito de mejorar la telemetría analógica de las señales dentro de la Pacific Northwest Seismograph Network (PNSN) (Red Sismográfica del Noroeste del Pacífico). Su desarrollo recibió el respaldo del Programa de Geofísica de la Universidad de Washington y del "Volcano Hazards and Earthquake Hazards programs of the United States Geological Survey (USGS) (Programa de Investigaciones de Riesgos Volcánicos y Programa de Investigaciones de Riesgos Sísmicos de los EEUU). Cientos de instrumentos se han construido e instalado. Además de utilizarlo el PNSN, el McVCO es usado por el Observatorio Vulcanológico de Alaska para monitorear los volcanes aleutianos y por el USGS Volcano Disaster Assistance Program (Programa de Ayuda en las Catástrofes Volcánicas del USGS) para responder a crisis volcánicas en otros países. Este manual cubre el funcionamiento del McVCO, es una referencia técnica para aquellos que necesitan saber con más detalle cómo funciona el McVCO, y cubre una serie de temas que requieren un trato explícito o que derivan del despliegue del instrumento.

Open-File Report