Mycobacterium fortuitum Cruz from the tropical fish Hyphessobrycon innesi
No abstract available.
Journal of Bacteriology↗
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Results for “Tropics”
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Tropical lakes, copropel, and oil shale
During a long-continued study of the lacustrine beds of the Eocene Green River Formation, I have tried to interpret past events from observation of present-day processes. After a search of some 40 years, four lakes have been found that are producing a kind of organic ooze judged to be a modern analogue of the precursors of rich oil shale. Two of the lakes are in central Africa and two are in Florida. All four are shallow. The ooze in all four is predominantly algal, entirely in the form of minute fecal pellets, and does not decay in warm, wet, oxidizing environments. Several of the most unusual, mummified microorganisms found in the oil shale of the Green River are illustrated as testament to the inference that the Eocene organic oozes also were resistant to decay. Studies to determine why these algal oozes do not decay are in progress, but as yet no satisfactory explanation is available. The ooze from Mud Lake, Florida, contains very few living bacteria but a great many bacterial spores, suggesting some active inhibitor. Gentle and slow anaerobic decay takes place in the ooze 1 foot or more below the mud-water interface. The algal ooze accumulates slowly. That at a depth of 3 feet below the mud-water interface has a C 14 age of 2280 ± 200 years. If compacted, this 3-foot layer would amount to a layer only about 0.5 inch thick. The air-dried algal mud (from Mud Lake) looks much like oil shale and has a C-H ratio essentially like that of the organic matter in oil shale. The oxygen of the mud, however, is roughly 5 times as high as in oil shale. The calorific value of dried Mud Lake algal ooze is about 6600 cal/g, whereas the organic matter from Green River oil shale averages about 9500 cal/g. Analyses show that the dried algal ooze from Mud Lake contains small quantities of higher fatty acids (C 12 –C 34 ), with C 16 being dominant. It also contains some unsaturated fatty acids and about 0.3 per cent of n-alkanes, predominantly odd carbons, with C 29 being dominant. A few qualitative analyses show that carotenoid pigments and terpenes are also present. A possible source of hydrocarbons is the long branched side chain of the chlorophyll molecule. Small crustaceans liberate this in the form of phytol, which, by dehydration, can go over into a series of saturated and unsaturated hydrocarbons, including phytanc and pristane, both of which are common in Green River oil shale. Search for other precursors of hydrocarbons continues.
GSA Bulletin↗
Controls on the composition of fluvial sands from a tropical weathering environment: Sands of the Orinoco River drainage basin, Venezuela and Colombia
Fluvial sands in the Orinoco River drainage basin fall into three main compositional groupings: (1) sands of subarkose and arkose composition, from high-relief parts of the Guayana Shield, where crystalline rocks are exposed; (2) sands of litharenite and sub-litharenite composition from the active orogenic belt at the western and northwestern margins of the drainage basin, and in those parts of the Llanos (Andean foreland basin) proximal to the mountain belt; and (3) sands of quartz-arenite composition, widespread throughout the remainder of the basin. Multicycle sands of quartz-arenite composition are produced from platform cover on parts of the elevated shield and from uplifted foreland-basin fill in the eastern Llanos. First-cycle sands of quartz-arenite composition are produced from granitic rocks on low-relief regions of the Guayana Shield and from reworked Holocene alluvium in parts of the western Llanos distal to the orogenic terranes. Erosion in the Orinoco River drainage basin may be described in terms of transport-limited and weathering-limited denudation regimes. In active orogenic terranes and in parts of the elevated shield, transport processes can remove weathered material as rapidly as it is produced by chemical weathering. Thin soils and short soil-mineral residence time result in sands that are incompletely chemically weathered and accurately reflect source-rock composition. In the orogenic terranes, subtle variations in source-rock lithology are preserved in sand composition. In contrast, in low-relief parts of the Guayana Shield and on flat erosion surfaces of the upland shield, weathering exceeds the rate at which transport processes can remove weathered material. Thick soils accumulate, soil-mineral residence time is long, and detritus is highly altered chemically. On much of the lowland Guayana Shield, upper soil layers consist of nearly pure quartz sand that erodes to produce first-cycle fluvial sand of quartz-arenite composition. Chemically weathered orogenically derived sand enters the Orinoco River on the left bank, while feldspathic shield-derived sand enters on the right bank. This geometry is responsible for the nearly total lack of longitudinal variation in sand composition along the 1,400-km length of the Orinoco River mainstem. Except in the upper 100 km of the Orinoco River mainstem, cross-channel heterogeneity in sand composition is also modest. Nevertheless, a weighted linear least-squares modeling approach suggests that sand moves down the Orinoco River mainstem in distinct pulses, perhaps corresponding to times of accelerated erosion in headwater regions. Because rivers that head in the orogenic terranes and traverse the Llanos contribute more than 99% of the sand in the lower Orinoco River mainstem, the composition of this sand is dominated by chemically weathered sands from the Llanos. The Orinoco River—the third largest river in the world—delivers first-cycle sands of quartz-arenite composition to its delta.
Geological Society of America Bulletin↗
Deposition of Franciscan Complex cherts along the paleoequator and accretion to the American margin at tropical paleolatitudes
Red radiolarian cherts from three localities within the Franciscan subduction complex of northern California contain three components of remanent magnetization which are best isolated by progressive thermal demagnetization. The first component, usually removed by 300 °C, has an in situ direction similar to the present axial-dipole field and is probably a recently acquired thermoviscous overprint. A second component, generally removed between 300 and 630 °C, has constant (normal) polarity and direction within each section and is interpreted to have been acquired by low-temperature chemical alteration during subduction and accretion at the continental margin. The third component, isolated between ∼560 and 680 °C, has both normal and reversed polarities, passes a fold test, and is inferred to have been acquired during or soon after deposition. The available paleomagnetic, biostratigraphic, and geochemical data indicate deposition of these cherts along the paleoequator (0°-2°N or S paleolatitude) between Pliensbachian and Oxfordian time as the oceanic plate moved eastward, relative to North America, beneath the equatorial zone of high biologic productivity. Between Bathonian and Cenomanian time, the chert sequences apparently moved progressively away from the paleoequator (2°-15°N or S), and were soon after accreted to the American continental margin. Plate reconstruction models for the Farallon plate corroborate low-paleolatitude trajectories from ridge crest to subduction zone (for example, from 3°S to 11°N), and they imply subsequent northward translation of the Franciscan Complex (> 4,000 km) by strike-slip faulting related to relative motions between the Farallon, Kula, Pacific, and North American plates.
Geological Society of America Bulletin↗
Precipitation changes in the western tropical Pacific over the past millennium
Modern seasonal and inter-annual precipitation variability in Palau is linked to both meridional movement of the Intertropical Convergence Zone (ITCZ) and changes in the Pacific Walker Circula- tion (PWC) associated with the El Niño–Southern Oscillation. Thus, Palau’s hydroclimate should be sensitive to mean shifts in the ITCZ and PWC on decadal to centennial time scales. Using compound- specific hydrogen isotope ratios (δ2H) of dinosterol in lake sediments, we generated a decadal-resolution proxy record of hydroclimatic variability in Palau spanning the past 800 yr. Results indicate a dry- ing trend during the Little Ice Age in Palau, consistent with a south- ward displacement of the ITCZ. In addition to the secular drying trend, there are persistent large (~20‰) multi-decadal to centennial oscillations in the δ2H record, the most recent of which indicates an abrupt shift to drier conditions in the mid-1970s that coincides with a decadal-scale negative shift in the Southern Oscillation Index.
Geology↗
Tropical shoreline ice in the late Cambrian: Implications for earth's climate between the Cambrian Explosion and the Great Ordovician Biodiversification Event
Middle to late Cambrian time (ca. 513 to 488 Ma) is characterized by an unstable plateau in biodiversity, when depauperate shelf faunas suffered repeated extinctions. This poorly understood interval separates the Cambrian Explosion from the Great Ordovician Biodiversification Event and is generally regarded as a time of sustained greenhouse conditions. We present evidence that suggests a drastically different climate during this enigmatic interval: Features indicative of meteoric ice are well preserved in late Cambrian equatorial beach deposits that correspond to one of the shelf extinction events. Thus, the middle to late Cambrian Earth was at least episodically cold and might best be considered a muted analogue to the environmental extremes that characterized the Proterozoic, even though cooling in the two periods may have occurred in response to different triggers. Such later Cambrian conditions may have significantly impacted evolution preceding the Ordovician radiation.
GSA Today↗
Brown coal maceral distributions in a modern domed tropical Indonesian peat and a comparison with maceral distributions in Middle Pennsylvanian–age Appalachian bituminous coal beds
Analyses of modern Indonesian peat samples reveal that the optical characteristics of peat constituents are consistent with the characteristics of macerals observed in brown coal and, as found by previous workers, brown-coal maceral terminology can be used in the analysis of modern peat. A core from the margin and one from near the center of a domed peat deposit in Riau Province, Sumatra, reveal that the volume of huminite macerals representing well-preserved cell structures (red, red-gray, and gray textinite; ulminite; and corpo/textinite) decreases upward. Huminite macerals representing severely degraded (<20 microns) cellular debris (degraded textinite, attrinite, and densinite) increase uniformly from the base to the surface. Greater degradation of the huminite macerals in the upper peat layers in the interior of the deposit is interpreted to be the result of fungal activity that increased in response to increasingly aerobic conditions associated with the doming of the peat deposit. Aerobic conditions concurrent with the activities of fungi may result in incipient oxidation of the severely degraded huminite macerals. This oxidation could lead to the formation of degradosemifusinite, micrinite, and macrinite maceral precursors in the peat, which may become evident only upon coalification. The core at the margin was petrographically more homogeneous than the core from the center and was dominated by well-preserved huminite macerals except in the upper 1 m, which showed signs of aerobic degradation and was similar to the upper 1 m of the peat in the interior of the deposit. The Stockton and other Middle Pennsylvanian Appalachian coal beds show analogous vertical trends in vitrinite maceral composition. The succession from telocollinite-rich, bright coal lithotypes in the lower benches upward to thin-banded/matrix collinite and desmocollinite in higher splint coal benches is believed to reflect a progression similar to that from the well-preserved textinite macerals in the lower portions of the peat cores to severely fragmented and degraded cellular materials (degraded textinite, attrinite, and densinite) in the upper portions of the cores. This petrographic sequence from bright to splint coal in the Stockton and other Middle Pennsylvanian coal beds supports previous interpretations of an upward transition from planar to domed swamp accumulations.
Special Paper of the Geological Society of America↗
Dissolved inorganic nitrogen composition, transformation, retention, and transport in naturally phosphate-rich and phosphate-poor tropical streams
The composition, transformation, and transport of dissolved inorganic nitrogen (DIN) was compared in waters associated with two lowland streams in Costa Rica. The Salto River is enriched by geothermal-based soluble reactive phosphorus (SRP), which raises the concentration up to 200 μg/L whereas Pantano Creek, an unimpacted tributary, has an SRP concentration <10 μg/L. Ammonium concentration in springs adjacent to the Salto and Pantano was typically greater than channel water (13 of 22 locations) whereas nitrate concentration was less (20 of 22 locations). Ground waters were typically high in ammonium relative to nitrate whereas channel waters were high in nitrate relative to ammonium. Sediment slurry studies indicated nitrification potential in two sediment types, firm clay (3.34 μg N∙cm −3 ∙d −1 ) and uncompacted organic-rich sediment (1.76 μg N∙cm −3 ∙d −1 ). Ammonium and nitrate amendments to each stream separately resulted in nitrate concentrations in excess of that expected after correction for dilution using a conservative tracer. SRP concentration was not affected by DIN amendment to either stream. SRP concentration in the Pantano appeared to be regulated by abiotic sediment exchange reactions whereas DIN composition and concentration were regulated by a combination of biotic and abiotic processes.
Canadian Journal of Fisheries and Aquatic Sciences↗
Connectivity in the tropical coastal seascape: Implications for marine spatial planning and resource management
No abstract available.
Book chapter↗
Examining change detection approaches for tropical mangrove monitoring
This study evaluated the effectiveness of different band combinations and classifiers (unsupervised, supervised, object-oriented nearest neighbor, and object-oriented decision rule) for quantifying mangrove forest change using multitemporal Landsat data. A discriminant analysis using spectra of different vegetation types determined that bands 2 (0.52 to 0.6 μm), 5 (1.55 to 1.75 μm), and 7 (2.08 to 2.35 μm) were the most effective bands for differentiating mangrove forests from surrounding land cover types. A ranking of thirty-six change maps, produced by comparing the classification accuracy of twelve change detection approaches, was used. The object-based Nearest Neighbor classifier produced the highest mean overall accuracy (84 percent) regardless of band combinations. The automated decision rule-based approach (mean overall accuracy of 88 percent) as well as a composite of bands 2, 5, and 7 used with the unsupervised classifier and the same composite or all band difference with the object-oriented Nearest Neighbor classifier were the most effective approaches.
Photogrammetric Engineering and Remote Sensing↗
Electroshocking in tropical insular streams
Explore the source record for details and available documents.
Progressive Fish-Culturist↗
Adaptive influence of extrinsic and intrinsic factors on variation of incubation periods among tropical and temperate passerines
Understanding intrinsic (physiological) and extrinsic (e.g., temperature) causes of variation in embryonic development time (incubation period) is important because they can have different impacts on individual quality. Robert Ricklefs and colleagues have argued that longer incubation periods result primarily from intrinsic physiological programs that increase individual quality and adult survival. They claim that incubation periods are largely invariant and that extrinsic factors like temperature have little impact. We have argued that adult survival may be a cause rather than a consequence of much of the variation in embryonic development time. A reduction in extrinsic sources of annual adult mortality (e.g., migration, predation, nonbreeding-season mortality) favors reduced parental effort during incubation to minimize costs to future reproduction and survival. Reduced parental effort, in turn, manifests as cooler average egg temperatures that yield longer incubation periods. Ricklefs and colleagues mischaracterized our hypothesis and deconstructed their own incorrect version, while also making some incorrect statements. We show that reevaluation of previous evidence provided by this group actually supports a role of egg temperature for the variation in incubation periods. We also summarize other observational and experimental evidence that incubation periods are not invariant and that egg temperature has a strong causal influence on variation within and among species. In fact, egg temperature explains ∼60% of the difference in incubation periods among species. The remaining ∼40% reflects intrinsic physiological programs and other factors, potentially providing intrinsic benefits. Ultimately, annual adult mortality explains substantial variation in parental effort and egg temperature, and the latter strongly explains variation in incubation periods. Both intrinsic programs and extrinsic temperature effects need to be considered in attempts to understand incubation strategies.
The Auk↗
Being loud to find a quiet bird: Surveying a secretive tropical avian species
Secretive birds are hard to detect, and thus, likely underestimated when surveyed, potentially preventing measures to protect them. We identified a sampling period and method that would yield the most reliable estimates of population numbers of the secretive Puerto Rican Lizard-Cuckoo ( Coccyzus vieilloti ). We addressed these objectives by comparing point counts (passive) and playback broadcast (active) survey methods from January to December, 2022 at Cambalache State Forest, Puerto Rico. We surveyed 20 stations (radius = 50 m each) between sunrise and 10 am, employing the time-of-detection method. We recorded strong responses from C. vieilloti after birds had been stimulated by playback broadcasts (recapture probabilities), corresponding to a behavioral response (M b ). For example, average capture (p) and recapture (c) probabilities within the peak breeding season for active surveys were 0.23 ± 0.10 and 0.49 ±0.08, respectively. Active surveys yielded higher estimates of C. vieilloti compared to passive surveys. For example, active survey expected population numbers (15.6 ha or area sampled) during peak breeding season were 42.87 ± 12.08 compared to 19.60 ± 2.08 individuals from passive surveys. Coefficients of variation population estimates of active surveys ranged between 10 and 16%, with one exception (28%), well within acceptable levels for wildlife studies. We show that secretive species like C. vieilloti can be reliably surveyed using playback broadcasts. Surveys should be conducted during the peak breeding season when estimates are higher and have better precision. Conducting similar tests on other secretive species could ensure that their status is not mischaracterized and that they receive the benefits of appropriate conservation measures, if warranted.
Cambalache State Forest, Puerto Rico↗
Time-varying rates of organic and inorganic mass accumulation in southeast Louisiana marshes: Relationships to sea-level anomalies and tropical storms
Louisiana's coastal wetlands are complex systems that require a continuous input of organic and inorganic material to keep pace with relative sea-level rise. Coastal restoration projects such as sediment diversions are being implemented to mitigate land loss and increase availability of inorganic sediment to coastal wetlands, and marshes specifically rely on organic material to build soil volume and maintain surface elevation. Interannual-to-decadal sea-level anomalies such as hurricanes can affect marsh accretion, mineral deposition, and plant productivity. In this light, complex ecogeomorphic feedback controls whether a marsh surface is sustainable or eroded/drowns. This study performs some of the first differential vertical accretion rates (VARs) and organic and inorganic mass accumulation rates (MARs) over time in SE Louisiana marshes determined from the 210 Pb Constant Rate of Supply model, coupled with standard 137 Cs VARs. These accumulation rates over the past ∼100 years were measured from a total of six brackish and salt marsh locations in Barataria Basin near the proposed Mid-Barataria Sediment Diversion. They were then related to interannual sea-surface elevations at Grand Isle, Louisiana, over the last ∼60 years and recorded hurricane activity in the delta. Results show VARs range from 0.63 cm/y to 1.69 cm/y and total MARs range from 0.11 to 0.43 g/cm 2 /y. Temporally, VARs and MARs (total, inorganic, and organic) are characterized by gradual increases in rates with decreasing age along with episodic peaks in VARs and MARs. The findings of this study indicate that no relationship occurs between sea-level anomalies and VARs or organic and inorganic MARs; however, a strong relationship appears to occur between major hurricanes to VAR and MAR contributions. Furthermore, high water content (81 ± 8%) and organic-rich soils in the sediment cores highlight the significance of belowground biomass and associated pore volume in maintaining marsh elevation in the study area.
Louisiana↗
Predicting Impacts of tropical cyclones and sea-Level rise on beach mouse habitat
Alabama beach mouse (ABM) ( Peromyscus polionotus ammobates ) is an important component of the coastal dune ecosystem along the Gulf of Mexico. Due to habitat loss and degradation, ABM is federally listed as an endangered species. In this study, we examined the impacts of storm surge and wind waves, which are induced by hurricanes and sea-level rise (SLR), on the ABM habitat on Fort Morgan Peninsula, Alabama, using advanced storm surge and wind wave models and spatial analysis tools in geographic information systems (GIS). Statistical analyses of the long-term historical data enabled us to predict the extreme values of winds, wind waves, and water levels in the study area at different return periods. We developed a series of nested domains for both wave and surge modeling and validated the models using field observations of surge hydrographs and high watermarks of Hurricane Ivan (2004). We then developed wave atlases and flood maps corresponding to the extreme wind, surge and waves without SLR and with a 0.5 m of SLR by coupling the wave and surge prediction models. The flood maps were then merged with a map of ABM habitat to determine the extent and location of habitat impacted by the 100-year storm with and without SLR. Simulation results indicate that more than 82% of ABM habitat would be inundated in such an extreme storm event, especially under SLR, making ABM populations more vulnerable to future storm damage. These results have aided biologists, community planners, and other stakeholders in the identification, restoration and protection of key beach mouse habitat in Alabama. Methods outlined in this paper could also be used to assist in the conservation and recovery of imperiled coastal species elsewhere.
Alabama↗
Indigenous soil bacteria and low moisture may limit but allow faecal bacteria to multiply and become a minor population in tropical soils
The soil environment in Hawaii is generally characterised as sub-optimal but permissive to support the in situ growth of E. coli and enterococci. However, soil desiccation and competition for nutrients by major indigenous soil microflora have been identified as potential factors that could limit a rapid and continual growth of faecal indicator bacteria in this soil environment. Despite these limitations, the genetic capacities of E. coli and enterococci are robust enough to enable these bacteria to become established as minor populations of Hawaii's soil microflora. Although the concentrations of E. coli and enterococci may have represented a fraction of the total soil microbiota, their presence in this habitat was very significant, for two important reasons: (a) soil was a major environmental source of E. coli and enterococci, and (b) the elevated counts of these bacteria in streams that routinely exceeded the EPA standards were due to run-off from soil. As a result, E. coli and enterococci were inadequate indicators to measure the degree of faecal contamination and potential presence of sewage-borne pathogens in Hawaiian streams.
Hawaii↗