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At least 325 records · Page 18Linked to original sources
USGS2018

Prey fish returned to Forster’s tern colonies suggest spatial and temporal differences in fish composition and availability

Predators sample the available prey community when foraging; thus, changes in the environment may be reflected by changes in predator diet and foraging preferences. We examined Forster’s tern ( Sterna forsteri ) prey species over an 11-year period by sampling approximately 10,000 prey fish returned to 17 breeding colonies in south San Francisco Bay, California. We compared the species composition among repeatedly-sampled colonies (≥ 4 years), using both relative species abundance and the composition of total dry mass by species. Overall, the relative abundances of prey species at seven repeatedly-sampled tern colonies were more different than would be expected by chance, with the most notable differences in relative abundance observed between geographically distant colonies. In general, Mississippi silverside ( Menidia audens ) and topsmelt silverside ( Atherinops affinis ) comprised 42% of individuals and 40% of dry fish mass over the study period. Three-spined stickleback ( Gasterosteus aculeatus ) comprised the next largest proportion of prey species by individuals (19%) but not by dry mass (6%). Five additional species each contributed ≥ 4% of total individuals collected over the study period: yellowfin goby ( Acanthogobius flavimanus ; 10%), longjaw mudsucker ( Gillichthys mirabilis ; 8%), Pacific herring ( Clupea pallasii ; 6%), northern anchovy ( Engraulis mordax ; 4%), and staghorn sculpin ( Leptocottus armatus ; 4%). At some colonies, the relative abundance and biomass of specific prey species changed over time. In general, the abundance and dry mass of silversides increased, whereas the abundance and dry mass of three-spined stickleback and longjaw mudsucker decreased. As central place foragers, Forster’s terns are limited in the distance they forage; thus, changes in the prey species returned to Forster’s tern colonies suggest that the relative availability of some fish species in the environment has changed, possibly in response to alteration of the available habitat.

California↗
USGS1954

The quality and character of Pacific Northwest waters

This paper is a general discussion of the quality and chemical character of surface and ground waters in the Pacific Northwest as shown by the available data. Previous quality of water studies reported in the literature are reviewed. The composition of natural waters is considered as to the source and significance of the different mineral constituents. Analytical data are presented showing mineral constituents and physical properties of selected surface and ground waters in the region.

Open-File Report↗
USGS1885

Notes on the stratigraphy of California

A complete examination of the Coast Ranges of California can hardly be undertaken by the Geological Survey for some years to come, consistently with the plans at present formed. The detailed study of certain small areas in these ranges, however, raised a number of questions as to the age and stratigraphical relations of the various series of beds, which it seemed necessary to answer as well as circumstances permitted. Having reached certain conclusions, for the most part on structural grounds, it became indispensable for me to obtain the co-operation of an expert paleontologist. At my solicitation, and with the approval of the director, Dr. C. A. White consented to visit the field with me. He passed several months of the summer of 1884 in studying my collections and the occurrence of fossils in place with reference to the points at issue. His results appear in Bulletin No. 15, that and this being complementary to one another. I had the great satisfaction of finding that Dr. White was led from a purely paleontological position to conclusions entirely accordant with those at which I had already arrived on structural grounds. His long experience as a general geologist also made his agreement with me as to the structural indications a welcome confirmation of my opinions. These studies, in conjunction with many observations made by earlier workers on the Pacific Coast, particularly those of the State Geological Survey of California, under Prof. J. D. Whitney, have led to some seemingly well established general conclusions of interest. The more purely geological results will be presented in the following pages, in the imperfect form in which alone it will be possible to give them until an immense amount of additional work shall have been done.

California↗
USGS2009

Preliminary assessment of vertical stability and gravel transport along the Umpqua River, southwestern Oregon

This report addresses physical channel issues related to instream gravel mining on the Umpqua River and its two primary tributaries, the North and South Umpqua Rivers. This analysis constitutes a “Phase I” investigation, as designated by an interagency team cochaired by the U.S. Army Corps of Engineers, Portland District, and the Oregon Department of State Lands to address instream gravel mining issues across Oregon. Phase I analyses rely primarily on existing datasets and cursory analysis to determine the vertical stability of a channel to ascertain whether a particular river channel is aggrading, degrading, or at equilibrium. Additionally, a Phase I analysis identifies other critical issues or questions pertinent to physical channel conditions that may be related to instream gravel mining activities. This analysis can support agency permitting decisions as well as possibly indicating the need for additional studies. This specific analysis focuses on the mainstem Umpqua River from the Pacific Ocean at River Mile (RM) 0 to the confluence of the North and South Umpqua Rivers (at RM 111.8), as well as the lower 29 mi of the North Umpqua River and the lower 80 mi of the South Umpqua River (fig. 1). It is within these reaches where mining of gravel bars for aggregate has been most prevalent.

Oregon↗
USGS2011

Suspended sediment and organic contaminants in the San Lorenzo River, California, water years 2009-2010

This report presents analyses of suspended sediment and organic contaminants measured during a two-year study of the San Lorenzo River, central California, which discharges into the Pacific Ocean within the Monterey Bay National Marine Sanctuary. Most suspended-sediment transport occurred during flooding caused by winter storms; 55 percent of the sediment load was transported by the river during a three-day flood in January 2010. Concentrations of polyaromatic hydrocarbons can exceed regulatory criteria during high-flow events in the San Lorenzo River. These results highlight the importance of episodic sediment and contaminant transport in steep, mountainous, coastal watersheds and emphasize the importance of understanding physical processes and quantifying chemical constituents in discharge from coastal watersheds on event-scale terms.

Open-File Report↗
USGS2012

Design and performance of radio telemetry systems for assessing juvenile fish passage at three hydroelectric dams

Studies of the effects of hydroelectric dams on fish populations are common (Williams 2008). Dams block passage of migratory and resident fish, alter habitats from free-flowing to lacustrine, and can alter water temperatures both upstream and downstream. At some dams, structures or operations are modified to reduce their effects on fish populations. In these cases, it is recommended that a series of studies be conducted before and after the alterations to help assess the effectiveness of the actions. We will describe three studies at hydroelectric dams on the Columbia and Snake rivers in the Pacific Northwest of the United States prompted by a need to reduce their effects on fishes, primarily salmonids, listed under the Endangered Species Act (ESA 1973). Hydroelectric development on the Columbia and Snake rivers occurred chiefly between the early 1930s and the late 1970s. Fish originating in the upper portions of the Columbia and Snake rivers must pass as many as eight dams on these rivers during their seaward migration and again on their trip back to their natal waters. Small changes in passage survival at each dam can be important, due to the multiplicative effects of the series of dams. For example, if downstream passage survival at each of eight dams and reservoirs was 90% and it was increased by only 3% per dam, the numbers of fish surviving through the entire hydro system would increase from 43% to 56%. Thus, precisely measuring small changes in passage survival are important to the overall program. This has been achieved by designing efficient telemetry systems and releasing large numbers of tagged fish.

Book chapter↗
USGS1997

Chronology of the episode 54 eruption at Kilauea Volcano, Hawaii, from GOES-9 satellite data

The free availability of GOES satellite data every 15 minutes makes these data an attractive tool for studying short-term changes on cloud-free volcanoes in the Pacific basin. We use cloud-free GOES-9 data to investigate the chronology of the January 1997, episode 54 eruption of Kilauea Volcano, Hawaii. Seventy-six images for this effusive eruption were collected over a 60-hour period and show the opening and shutdown of active fissures, the draining and refilling of the Pu'u 'O'o lava lake, and the cessation of activity at the ocean entry. Copyright 1997 by the American Geophysical Union.

Geophysical Research Letters↗
USGS2026

Climate-driven waterline variability along the North American West Coast

Sandy coasts are highly dynamic environments shaped by a myriad of hydro-sedimentary processes operating across various spatio-temporal scales. From seasonal to centennial timescales, sandy beach dynamics are strongly influenced by climate variability expressed in various forms, including seasonal cycles, climate modes (e.g., El Niño Southern Oscillation (ENSO)), and global warming. Satellite-based methods enable the observation of coastlines with unprecedented spatial and temporal coverage. However, over the past decade, as these methods have matured, coastal change studies have predominantly focused on long-term trends rather than on climate-driven cycles of shoreline change. In this study, we utilize a large dataset of monthly-sampled time series of waterline positions along the Pacific Coast of the United States and Baja California, Mexico. From these time series, we derived information on long-term trends and seasonal cycles of waterline change. Our analysis reveals clear contrasts in seasonal patterns of waterline variability across the study area, with greater amplitudes observed at higher latitudes. A shift in the dominant dynamics is evident in Southern Baja California, where shoreline variability is more influenced by intertropical dynamics and sea-level anomalies than by wave energy modulation, which dominates further north. ENSO is found to induce contrasting responses of the waterline along the study area. During El Niño events, shoreline retreat is observed in subtropical regions, while La Niña winters drive waterline retreat in higher latitudes, with southern regions either remaining stable or advancing.

Baja California, California, Oregon, Washington↗
USGS1992

Experimental evidence for the effects of polyphenolic compounds from Dictyoneurum californicum Ruprecht (Phaeophyta: Laminariales) on feeding rate and growth in the red abalone Haliotus rufescens Swainson

The effects of polyphenolic compounds from brown algae on grazing and growth rate of the California red abalone Haliotis rufescens Swainson were examined. Abalone consumed three phenolic-poor algal species, Laminaria sinclarii (Harvey) Farlow, Macrocystis pyrifera Agardh, and Nereocystis luetkeana Postels et Ruprecht (mean phenolic content = 0.52% dry mass), at a greater rate than two phenolic-rich species, Dictyoneurum californicum Ruprecht and Cystoseira osmundacea Agardh (mean phenolic content = 4.60% dry mass). This inverse relationship between phenolic content and consumption rate also existed after the algae were macerated and the liquid portion of the blended slurry incorporated in agar discs. However, the correlation between grazing rate and phenolic content imprpve d in this latter experiment, thus suggesting that abalone grazing was deterred significantly by the morphology of L. sinclarii and, to a lesser extent, of M. pyrifera . Polyphenolics extracted from D. californicum reduced abalone grazing rates by 90% when incorporated into agar discs at a concentration of 6 mg·ml −1 . Although abalone were unable to maintain body mass when fed ad libitum on macerated M. pyrifera incorporated into agar discs, polyphenolics from D. californicum further inhibited shell growth when added to the discs at 5 mg·ml −1 . The abalone ate less of the phenol-containing discs than of the discs lacking phenolics. Our results support findings of several prior studies that polyphenolic compounds from brown algae deter grazing by coastal zone herbivores in the northeast Pacific Ocean.

Journal of Experimental Marine Biology and Ecology↗
USGS2018

Natural and man-made hexavalent chromium, Cr(VI), in groundwater near a mapped plume, Hinkley, California—study progress as of May 2017, and a summative-scale approach to estimate background Cr(VI) concentrations

This report describes (1) work done between January 2015 and May 2017 as part of the U.S. Geological Survey (USGS) hexavalent chromium, Cr(VI), background study and (2) the summative-scale approach to be used to estimate the extent of anthropogenic (man-made) Cr(VI) and background Cr(VI) concentrations near the Pacific Gas and Electric Company (PG&E) natural gas compressor station in Hinkley, California. Most of the field work for the study was completed by May 2017. The summative-scale approach and calculation of Cr(VI) background were not well-defined at the time the USGS proposal for the background Cr(VI) study was prepared but have since been refined as a result of data collected as part of this study. The proposed summative scale consists of multiple items, formulated as questions to be answered at each sampled well. Questions that compose the summative scale were developed to address geologic, hydrologic, and geochemical constraints on Cr(VI) within the study area. Each question requires a binary (yes or no) answer. A score of 1 will be assigned for an answer that represents data consistent with anthropogenic Cr(VI); a score of –1 will be assigned for an answer that represents data inconsistent with anthropogenic Cr(VI). The areal extent of anthropogenic Cr(VI) estimated from the summative-scale analyses will be compared with the areal extent of anthropogenic Cr(VI) estimated on the basis of numerical groundwater flow model results, along with particle-tracking analyses. On the basis of these combined results, background Cr(VI) values will be estimated for “Mojave-type” deposits, and other deposits, in different parts of the study area outside the summative-scale mapped extent of anthropogenic Cr(VI).

California↗
USGS2015

Evidence for intercontinental parasite exchange through molecular detection and characterization of haematozoa in northern pintails ( Anas acuta ) sampled throughout the North Pacific Basin

Empirical evidence supports wild birds as playing a role in the interhemispheric exchange of bacteria and viruses; however, data supporting the redistribution of parasites among continents are limited. In this study, the hypothesis that migratory birds contribute to the redistribution of parasites between continents was tested by sampling northern pintails (Anas acuta) at locations throughout the North Pacific Basin in North America and East Asia for haemosporidian infections and assessing the genetic evidence for parasite exchange. Of 878 samples collected from birds in Alaska (USA), California (USA), and Hokkaido (Japan) during August 2011 - May 2012 and screened for parasitic infections using molecular techniques, Leucocytozoon, Haemoproteus, and Plasmodium parasites were detected in 555 (63%), 44 (5%), and 52 (6%) samples, respectively. Using an occupancy modeling approach, the probability of detecting parasites via replicate genetic tests was estimated to be high (p ≥ 0.95). Multi-model inference supported variation of Leucocytozoon parasite prevalence by northern pintail age class and geographic location of sampling in contrast to Haemoproteus and Plasmodium parasites for which there was only support for variation in parasite prevalence by sampling location. Thirty-one unique mitochondrial DNA haplotypes were detected among haematozoa infecting northern pintails including seven lineages shared between samples from North America and Japan. The finding of identical parasite haplotypes at widely distributed geographic locations and general lack of genetic structuring by continent in phylogenies for Leucocytozoon and Plasmodium provides evidence for intercontinental genetic exchange of haemosporidian parasites. Results suggest that migratory birds, including waterfowl, could therefore facilitate the introduction of avian malaria and other haemosporidia to novel hosts and spatially distant regions.

Alaska, California↗
USGS2022

Assessing climate change impacts on Pacific salmon using bioenergetics and spatiotemporal explicit river temperature predictions under varying riparian conditions

Pacific salmon and trout populations are affected by timber harvest, the removal and alteration of riparian vegetation, and the resulting physical changes to water quality, temperature, and associated delivery of high-quality terrestrial prey. Juvenile salmon and trout growth, a key predictor of survival, is poorly understood in the context of current and future (climate-change mediated) conditions, with resource managers needing information on how land use will impact future river conditions for these commercially and culturally important species. We used the Heat Source water temperature modeling framework to develop a spatiotemporal model to assess how riparian canopy and vegetation preservation and addition could influence river temperatures under future climate predictions in a coastal river fed by a moraine-dammed lake: the Quinault River in Washington State. The model predicted higher water temperatures under future carbon emission projections, representative concentration pathway (RCP) 4.5 and 8.5, with varying magnitude based on different riparian vegetation scenarios. We used the daily average temperature output from these scenarios to predict potential juvenile fish growth using the Wisconsin bioenergetics model. A combination of riparian vegetation removal and continued high carbon emissions resulted in a predicted seven-day average daily maximum temperature (7DADM) increase of 1.7°C in the lower river by 2080; increases in riparian shading mitigate this 7DADM increase to only 0.9°C. Under the current thermal regime, bioenergetics modeling predicts juvenile fish lose weight in the lower river; this loss of potential growth worsens by an average of 20–83% in the lower river by 2080, increasing with the loss of riparian shading. This study assess the impact of riparian vegetation management on future thermal habitat for Pacific salmon and trout under warming climates and provide a useful spatially explicit modeling framework that managers can use to make decisions regarding riparian vegetation management and its mechanistic impact to water temperature and rearing juvenile fish.

Washington↗
USGS2009

Fine-scale population genetic structure in Alaskan Pacific halibut ( Hippoglossus stenolepis )

Pacific halibut collected in the Aleutian Islands, Bering Sea and Gulf of Alaska were used to test the hypothesis of genetic panmixia for this species in Alaskan marine waters. Nine microsatellite loci and sequence data from the mitochondrial (mtDNA) control region were analyzed. Eighteen unique mtDNA haplotypes were found with no evidence of geographic population structure. Using nine microsatellite loci, significant heterogeneity was detected between Aleutian Island Pacific halibut and fish from the other two regions ( F ST range = 0.007–0.008). Significant F ST values represent the first genetic evidence of divergent groups of halibut in the central and western Aleutian Archipelago. No significant genetic differences were found between Pacific halibut in the Gulf of Alaska and the Bering Sea leading to questions about factors contributing to separation of Aleutian halibut. Previous studies have reported Aleutian oceanographic conditions at deep inter-island passes leading to ecological discontinuity and unique community structure east and west of Aleutian passes. Aleutian Pacific halibut genetic structure may result from oceanographic transport mechanisms acting as partial barriers to gene flow with fish from other Alaskan waters.

Alaska↗
USGS2008

A slab fragment wedged under Tokyo and its tectonic and seismic implications

The Philippine Sea and Pacific plate slabs both subduct beneath Tokyo, and so their configuration and seismic potential have been subject to intensive study . Previous work suggests that the Philippine Sea slab extends up to 100 km northwest of Tokyo and subducts to a depth of 90 km beneath the Kanto basin, where it is folded against the underlying Pacific slab. Here we evaluate seismic data in three dimensions and delineate a distinct 25-km-thick and 100-km-wide body beneath the Kanto basin that has hitherto been considered to be part of the Philippine Sea slab. We find that several of its characteristics—such as its high seismic velocity and the presence of a double seismic zone—point instead to an affinity with the Pacific slab, implying that the Philippine Sea slab penetrates to depths of only 35–40 km beneath the Kanto basin. We propose that the body is a fragment of Pacific lithosphere that formed by the collision of two intersecting seamount chains with the Japan Trench 2–3 million years ago. We suggest that such slab fragments may not be uncommon, especially where seamount subduction deforms trenches and near triple junctions.

Tokyo, Japan Trench↗
USGS2006

Molecular phylogeny of Babesia poelea from brown boobies ( Sula leucogaster ) from Johnston Atoll, Central Pacific

The phylogenetic relationship of avian Babesia with other piroplasms remains unclear, mainly because of a lack of objective criteria such as molecular phylogenetics. In this study, our objective was to sequence the entire 18S, ITS-1, 5.8S, and ITS-2 regions of the rRNA gene and partial ß-tubulin gene of B. poelea , first described from brown boobies ( Sula leucogaster ) from the central Pacific, and compare them to those of other piroplasms. Phylogenetic analyses of the entire 18S rRNA gene sequence revealed that B. poelea belonged to the clade of piroplasms previously detected in humans, domestic dogs, and wild ungulates in the western United States. The entire ITS-1, 5.8S, ITS-2, and partial ß-tubulin gene sequence shared conserved regions with previously described Babesia and Theileria species. The intron of the ß-tubulin gene was 45 bp. This is the first molecular characterization of an avian piroplasm.

Johnston Atoll National Wildlife Refuge↗
USGS2013

The influence of north Pacific atmospheric circulation on streamflow in the west

The annual cycle and nonseasonal variability of streamflow over western North America and Hawaii is studied in terms of atmospheric forcing elements. This study uses several decades of monthly average streamflow beginning as early as the late 1800's over a network of 38 stations. In addition to a strong annual cycle in mean streamflow and its variance at most of the stations, there is also a distinct annual cycle in the autocorrelation of anomalies that is related to the interplay between the annual cycles of temperature and precipitation. Of particular importance to these lag effects is the well-known role of water stored as snow pack, which controls the delay between peak precipitation and peak flow and also introduces persistence into the nonseasonal streamflow anomalies, with time scales from 1 month to over 1 year. The degree to which streamflow is related to winter atmospheric circulation over the North Pacific and western North America is tested using correlations with time averaged, gridded sea level pressure (SLP), which begins in 1899. Streamflow fluctuations show significant large-scale correlations for the winter (December through February) mean SLP anomaly patterns over the North Pacific with maximum correlations ranging from 0.3 to about 0.6. For streams along the west coast corridor the circulation pattern associated with positive streamflow anomalies is low pressure centered off the coast to the west or northwest, indicative of increased winter storms and an anomalous westerly-to-southwesterly wind component. For streams in the interior positive streamflow anomalies are associated with a positive SLP anomaly stationed remotely over the central North Pacific, and with negative but generally weaker SLP anomalies locally. One important influence on streamflow variability is the strength of the Aleutian Low in winter. This is represented by the familiar Pacific-North America (PNA) index and also by an index defined herein the “CNP” (Central North Pacific). This index, beginning in 1899, is taken to be the average of the SLP anomaly south of the Aleutians and the western Gulf of Alaska. Correlations between PNA or CNP and regional anomalies reflect streamflow the alternations in strength and position of the mean North Pacific storm track entering North America as well as shifts in the trade winds over the subtropical North Pacific. Regions whose streamflow is best tuned to the PNA or CNP include coastal Alaska, the northwestern United States, and Hawaii; the latter two regions have the opposite sign anomaly as the former. The pattern of streamflow variations associated with El Niño is similar, but the El Niño signal also includes a tendency for greater than normal streamflow in the southwestern United States. These indices are significantly correlated with streamflow at one to two seasons in advance of the December–August period, which may allow modestly skillful forecasts. It is important to note that streamflow variability in some areas, such as British Columbia and California, does not respond consistently to these broad scale Pacific atmospheric circulation indices, but is related to regional atmospheric anomaly features over the eastern North Pacific. Spatially, streamflow anomalies are fairly well correlated over scales of several hundred kilometers. Inspection of the spatial anomalies of stream-flow in this study suggest an asymmetry in the spatial pattern of positive versus negative streamflow anomalies in the western United States: dry patterns have tended to be larger and more spatially coherent than wet patterns.

Pacific Ocean↗
USGS2008

Forage fish of the Pacific Rim as revealed by diet of a piscivorous seabird: Synchrony and relationships with sea surface temperature

We tested the hypothesis of synchronous interannual changes in forage fish dynamics around the North Pacific Rim. To do this, we sampled forage fish communities using a seabird predator, the rhinoceros auklet ( Cerorhinca monocerata ), at six coastal study sites from Japan to California. We investigated whether take of forage fishes was related to local marine conditions as indexed by sea surface temperature (SST). SST was concordant across sites in the eastern Pacific, but inversely correlated between east and west. Forage fish communities consisted of anchovy ( Engraulis spp.), sandlance ( Ammodytes spp.), capelin ( Mallotus spp.), and juvenile rockfish ( Sebastes spp.), among others, and take of forage fish varied in response to interannual and possibly lower-frequency oceanographic variability. Take of primary forage species were significantly related to changes in SST only at the eastern sites. We found synchrony in interannual variation of primary forage fishes across several regions in the eastern Pacific, but no significant east–west correlations. Specifically in the Japan Sea, factors other than local SST or interannual variability may more strongly influence forage fishes. Predator diet sampling offers a fishery-independent, large-scale perspective on forage fish dynamics that may be difficult to obtain using conventional means of study.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2012

Cross-seasonal patterns of avian influenza virus in breeding and wintering migratory birds: a flyway perspective

The spread of avian influenza viruses (AIV) in nature is intrinsically linked with the movements of wild birds. Wild birds are the reservoirs for the virus and their migration may facilitate the circulation of AIV between breeding and wintering areas. This cycle of dispersal has become widely accepted; however, there are few AIV studies that present cross-seasonal information. A flyway perspective is critical for understanding how wild birds contribute to the persistence of AIV over large spatial and temporal scales, with implications for how to focus surveillance efforts and identify risks to public health. This study characterized spatio-temporal infection patterns in 10,389 waterfowl at two important locations within the Pacific Flyway--breeding sites in Interior Alaska and wintering sites in California's Central Valley during 2007-2009. Among the dabbling ducks sampled, the northern shoveler (Anas clypeata) had the highest prevalence of AIV at both breeding (32.2%) and wintering (5.2%) locations. This is in contrast to surveillance studies conducted in other flyways that have identified the mallard (Anas platyrhynchos) and northern pintail (Anas acuta) as hosts with the highest prevalence. A higher diversity of AIV subtypes was apparent at wintering (n=42) compared with breeding sites (n=17), with evidence of mixed infections at both locations. Our study suggests that wintering sites may act as an important mixing bowl for transmission among waterfowl in a flyway, creating opportunities for the reassortment of the virus. Our findings shed light on how the dynamics of AIV infection of wild bird populations can vary between the two ends of a migratory flyway.

Vector-Borne and Zoonotic Diseases↗