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At least 325 records · Page 18Linked to original sources
USGS2012

Nile Delta vegetation response to Holocene climate variability

A 7000 yr palynologic record from Burullus Lagoon, Nile Delta, Egypt, is assessed to investigate changes in terrestrial vegetation in response to Nile flow. Previous studies in this region have shown that sea-level rise in the early to mid-Holocene, and markedly increased human land use during the past several centuries, altered vegetation in and around the lagoon. The pollen record from this study documents changes in delta vegetation that likely reflect variations in Nile flow. We suggest that Cyperaceae pollen is a sensitive marker of precipitation over the Nile headwaters and the resultant Nile flow. Decreases in Cyperaceae pollen, interpreted as a marker for diminished Nile flow, as well as the increase in relative abundance of microscopic charcoal, occurred at ca. 6000–5500, ca. 5000, ca. 4200, and ca. 3000 cal. yr B.P. (calibrated years before present). These correspond to extreme regional and global aridity events associated with a more southerly mean position of the Intertropical Convergence Zone. These changes, also recorded by other proxy studies, indicate that several marked regional drought events affected the Nile Delta region and impacted ancient Egyptian and Middle Eastern civilizations.

Nile Delta↗
USGS2015

SHRIMP U–Pb and REE data pertaining to the origins of xenotime in Belt Supergroup rocks: evidence for ages of deposition, hydrothermal alteration, and metamorphism

The Belt–Purcell Supergroup, northern Idaho, western Montana, and southern British Columbia, is a thick succession of Mesoproterozoic sedimentary rocks with an age range of about 1470–1400 Ma. Stratigraphic layers within several sedimentary units were sampled to apply the new technique of U–Pb dating of xenotime that sometimes forms as rims on detrital zircon during burial diagenesis; xenotime also can form epitaxial overgrowths on zircon during hydrothermal and metamorphic events. Belt Supergroup units sampled are the Prichard and Revett Formations in the lower Belt, and the McNamara and Garnet Range Formations and Pilcher Quartzite in the upper Belt. Additionally, all samples that yielded xenotime were also processed for detrital zircon to provide maximum age constraints for the time of deposition and information about provenances; the sample of Prichard Formation yielded monazite that was also analyzed. Ten xenotime overgrowths from the Prichard Formation yielded a U–Pb age of 1458 ± 4 Ma. However, because scanning electron microscope – backscattered electrons (SEM–BSE) imagery suggests complications due to possible analysis of multiple age zones, we prefer a slightly older age of 1462 ± 6 Ma derived from the three oldest samples, within error of a previous U–Pb zircon age on the syn-sedimentary Plains sill. We interpret the Prichard xenotime as diagenetic in origin. Monazite from the Prichard Formation, originally thought to be detrital, yielded Cretaceous metamorphic ages. Xenotime from the McNamara and Garnet Range Formations and Pilcher Quartzite formed at about 1160– 1050 Ma, several hundred million years after deposition, and probably also experienced Early Cretaceous growth. These xenotime overgrowths are interpreted as metamorphic–diagenetic in origin (i.e., derived during greenschist facies metamorphism elsewhere in the basin, but deposited in sub-greenschist facies rocks). Several xenotime grains are older detrital grains of igneous derivation. A previous study on the Revett Formation at the Spar Lake Ag–Cu deposit provides data for xenotime overgrowths in several ore zones formed by hydrothermal processes; herein, those results are compared with data from newly analyzed diagenetic, metamorphic, and magmatic xenotime overgrowths. The origin of a xenotime overgrowth is reflected in its rareearth element (REE) pattern. Detrital (i.e., igneous) xenotime has a large negative Eu anomaly and is heavy rare-earth element (HREE)-enriched (similar to REE in igneous zircon). Diagenetic xenotime has a small negative Eu anomaly and flat HREE (Tb to Lu). Hydrothermal xenotime is depleted in light rare-earth element (LREE), has a small negative Eu anomaly, and decreasing HREE. Metamorphic xenotime is very LREE-depleted, has a very small negative Eu anomaly, and is strongly depleted in HREE (from Gd to Lu). Because these characteristics seem to be process related, they may be useful for interpretation of xenotime of unknown origin. The occurrence of 1.16–1.05 Ga metamorphic xenotime, in the apparent absence of pervasive deformation structures, suggests that the heating may be related to poorly understood regional heating due to broad regional underplating of mafic magma. These results may be additional evidence (together with published ages from metamorphic titanite, zircon, monazite, and garnet) for an enigmatic, Grenville-age metamorphic event that is more widely recognized in the southwestern and eastern United States

Alberta, British Columbia, Idaho, Montana, Oregon,↗
USGS1970

Morphology of certain viruses of Salmonid Fishes. I. in vitro studies of some viruses causing Hematopoietic Necrosis

An electron microscope study was performed on three virus isolates that caused hematopoietic necrosis in salmonid fishes: infectious hematopoietic necrosis (IHN), Oregon Sockeye Disease (OSD), and Sacramento River Chinook Salmon Disease (SRCD). All three isolates were examined by negative staining of fathead minnow (FHM) monolayer tissue culture concentrates and IHN virus was also examined in thin sections of FHM cells. Viruslike particles were observed in infected tissues, but similar structures were not found in uninfected cultures. All three isolates were bullet-shaped, but oval and truncated forms were also observed. Mean measurements of particles from IHN-virus-infected tissue were 158 × 90 mμ. They consisted of an outer coat 15 mμ thick, a core 60 mμ in diameter, subunits about 5 mμ, and an axial pore about 20 mμ in diameter. These particles also were seen budding from the cytoplasmic membrane. Similar particles from SRCD were 159 × 90 mμ and isolates from OSD were 181 × 91 mμ. The three isolates were morphologically indistinguishable from one another and the greater length of OSD was considered insignificant. IHN, SRCD, and OSD viruses were tentatively placed in the rhabdovirus group, but serological studies are needed to determine if they are antigenically identical or should be included as separate members. Biochemical and physical characteristics of these viruses and a comparison with other salmonid viruses is also discussed.

Journal of the Fisheries Research Board of Canada↗
USGS1976

Glomerular mesangial fibrosis in hatchery-reared rainbow trout (Salmo gairdneri)

Light and electron microscopic studies were performed on tissues of hatchery-reared rainbow trout ( Salmo gairdneri ) having a disease of currently unknown etiology with external symptoms of severe edema which causes increased mortality rate. Comparison with unaffected trout tissues revealed loss of cellularity in glomerular tufts with a replacement of mesangial cells by connective tissue. Ultrastructural studies showed the material to be collagen and established the diagnosis of glomerular mesangial fibrosis. The glomerular lesion was associated with alterations in lining epithelium of proximal tubules and extensive debris within tubule lumens. The findings are compared to glomerular lesions in mammalian and amphibian kidney.

Journal of the Fisheries Research Board of Canada↗
USGS1987

Membrane filtration – Fluorescent antibody staining procedure for detecting and quantifying Renibacterium salmoninarum in coelomic fluid of Chinook Salmon ( Oncorhynchus tshawytscha )

We developed a rapid method for detecting and quantifying the pathogen Renibacterium salmoninarum in coelomic fluid of spring chinook salmon ( Oncorhynchus tshawytscha ) by concentrating the bacteria on 0.2-μm polycarbonate filters and staining them with specific fluorescein-labeled antibody. Centrifugation of samples and resuspension of the sedimented material in phosphate-buffered saline containing Triton X-100 increased the ease of filtration. Background fluorescence was reduced by counterstaining filters with Eriochrome black T. Postfiltration staining, rinsing, and counterstaining were done in the syringe-mounted filter holders, reducing handling of the filters and possible loss of bacteria. The number of bacteria detected by the filtration – fluorescent antibody technique in a broth culture of R . salmoninarum ranged from 6.7 × 10 7 to7.6 × 10 7 /mL and was slightly higher than that determined by plate count (9.6 × 10 6 /mL). Increasing the sample dilution or decreasing the number of microscope fields examined generally increased the variability of filter counts of R . salmoninarum . Using the filtration – fluorescent antibody technique, we detected the bacterium in the coelomic fluid of 85% of spawning female spring chinook salmon sampled from a hatchery population.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2022

Demonstration of a novel quantitative microscopy technique for automated characterization of in situ particulate matter in coal miners with progressive massive fibrosis

Rationale: Increasing exposure to respirable crystalline silica (RCS) linked to changes in mining production processes has been implicated in the resurgence of severe lung disease in U.S. coal miners. Lung mineralogy can provide insight into particle pathogenesis. However, standard approaches to characterizing in situ particulate matter (PM) by pulmonary pathologists have poor inter-rater comparability, and consensus agreement is time consuming. Scanning electron microscopy/energy-dispersive spectroscopy (SEM/EDX) is technically complex and labor intensive. We developed a method for quantitative in situ PM characterization using conventional polarized light microscopy (PLM) and explored PM features in lung tissue of coal miners with progressive massive fibrosis (PMF). Methods: With institutional review board approval, PLM images were obtained from 30 miners with PMF, classified by pathologists consensus based on PM profusion; 10 from each profusion group (mild/moderate/severe) were selected. Automated PM counting and characterization (including dimensions and grayscale intensity of PM > 0.3 m diameter) was performed on image samples using PLM with modified cell-counting software (BZ-X800 light microscope, Keyence Corporation, Osaka, Japan) (Figure 1). Quantitative PM density loge(PM count)/mm3 tissue was calculated for each sample and compared to pathologist PM profusion groups. PMF lesion type using consensus pathologist classification (13 coal-type, 9 mixed-type, and 8 silicotic-type) was compared to automated PM birefringence level (% particles with mean grayscale intensity <65, range 0-255). RCS particles are expected to be weakly birefringent (lower intensity) relative to other common minerals (e.g., silicates) contained in coal mine dust. PM features were analyzed in R 4.0.3 using one-way ANOVA for between-group comparisons. Results: Measured PM log-density increased significantly with higher qualitative profusion group (mild=10.480.98/mm3, moderate=11.460.81/mm3, severe=12.520.86/mm3, p<0.0001). Prevalence of weakly birefringent particles was significantly higher among silicotic-type PMF samples (31.57.9%) compared to either coal-type (21.510.1%, p=0.022) or mixed-type lesions (21.510.5%, p=0.025). Conclusion: This pilot study demonstrates the feasibility of a novel quantitative microscopy technique for counting and characterizing in situ lung PM in coal miners with PMF. Quantitative PM burden was comparable to pulmonary pathologists consensus profusion classification, but this method was substantially less time consuming and labor intensive and provided additional information about relevant PM features. The higher prevalence of weakly birefringent particles seen in silicotic-type PMF lesions may help inform mineralogic pathogenesis of RCS. Future efforts will expand the number of PMF cases analyzed, further validate our mineralogic findings using data from SEM/EDX and lung tissue digestate methods, and compare findings in historical versus contemporary coal miners with PMF.

Conference Paper↗
USGS2016

A brackish diatom, Pseudofrustulia lancea gen. et sp. nov. (Bacillariophyceae), from the Pacific coast of Oregon (USA)

Light and electron microscope observations show that a brackish diatom taxon should be classified as a new species of a new genus; Pseudofrustulia lancea gen . et sp . nov . We propose separating Pseudofrustulia from other similar genera such as Frickea , Frustulia , Amphipleura , Muelleria , and Envekadea on the basis of its thickened axial ribs, raphe endings, axial costae, morphology of helictoglossa, size of striae on valve surfaces, and areolae on the inner side between its axial ribs and raphe. Girdle bands may be another diagnostic feature for the separation of Pseudofrustulia from related taxa, but more detailed observations using SEM images are required to determine if bands are diagnostic.

Oregon↗
USGS2012

Safety of florfenicol administered in feed to tilapia (Oreochromis sp.)

The safety of Aquaflor&reg; (50% w/w florfenicol [FFC]) incorporated in feed then administered to tilapia for 20 days (2x the recommended duration) at 0, 15, 45, or 75 mg/kg body weight/day (0, 1, 3, or 5x the recommended dose of 15 mg FFC/kg BW/d) was investigated. Mortality, behavioral change, feed consumption, body size, and gross and microscopic lesions were determined. Estimated delivered doses were >96.9% of target. Three unscheduled mortalities occurred but were considered incidental since FFC-related findings were not identified. Feed consumption was only affected during the last 10 dosing days when the 45 and 75 mg/kg groups consumed only 62.5% and 55.3% of the feed offered, respectively. There were significant, dose-dependent reductions in body size in the FFC-dose groups relative to the controls. Treatment-related histopathological findings included increased severity of lamellar epithelial hyperplasia, increased incidence of lamellar adhesions, decreased incidence of lamellar telangiectasis in the gills, increased glycogen-type and lipid-type hepatocellular vacuolation in the liver, decreased lymphocytes, increased blast cells, and increased individual cell necrosis in the anterior kidney, and tubular epithelial degeneration and mineralization in the posterior kidney. These changes are likely to be of minimal clinical relevance, given the lack of mortality or morbidity observed. This study has shown that FFC, when administered in feed to tilapia at the recommended dose (15 mg FFC/kg BW/day) for 10 days would be well tolerated.

Toxicologic Pathology↗
USGS2023

An introduction to lesions and histology of scleractinian corals

Stony corals (Scleractinia) are in the Phylum Cnidaria (cnidae referring to various types of stinging cells). They may be solitary or colonial, but all secrete an external, supporting aragonite skeleton. Large, colonial members of this phylum are responsible for the accretion of coral reefs in tropical and subtropical waters that form the foundations of the most biodiverse marine ecosystems. Coral reefs worldwide, but particularly in the Caribbean, are experiencing unprecedented levels of disease, resulting in reef degradation. Most coral diseases remain poorly described and lack clear case definitions, while the etiologies and pathogenesis are even more elusive. This introductory guide is focused on reef-building corals and describes basic gross and microscopic lesions in these corals in order to serve as an invitation to other veterinary pathologists to play a critical role in defining and advancing the field of coral pathology.

Veterinary Pathology↗
USGS1982

Osteolipomatous metaplasia in the liver of cameloids

An aged male Bactrian camel ( Camelus ferus f. bactriana ), originally from the San Diego Zoo, died suddenly. Necropsy showed acute bloat and chronic liver disease. In samples of liver tissue fixed in 10% neutral buffered formalin, approximately 25% of the total volume of tissue was comprised of multiple white to cream-colored circumscribed nodules up to 1 cm in diameter, which were gritty when cut (fig. 1). Samples of liver were cut at 6 μ m for histologic examination. Microscopically, the nodules consisted of aggregations of large, vacuolated cells resembling fat cells with spicules of mature bone scattered throughout many nodules (fig. 2). Most nodules were circumscribed but not encapsulated. Single or small clusters of vacuolated cells, however, were scattered diffusely in the hepatic parenchyma surrounding the nodules. We found cholangitis and peribiliary fibrosis in some areas, but no generalized cirrhosis. Degeneration of hepatocytes was seen in some areas peripheral to the nodules. Compression of the hepatic architecture was evident in the liver parenchyma surrounding some nodules, but the primary change was infiltrative rather than expansive. Foci of lymphocytes and a few neutrophils were present in some nodules. Hematopoietic cells, described as a characteristic of myelolipomas, were not found in any of the nodules examined [2, 4].

Veterinary Pathology↗
USGS1998

Epizootic vacuolar myelinopathy of the central nervous system of bald eagles ( Haliaeetus leucocephalus ) and American coots ( Fulica americana )

Unprecedented mortality occurred in bald eagles ( Haliaeetus leucocephalus ) at DeGray Lake, Arkansas, during the winters of 1994-1995 and 1996-1997. The first eagles were found dead during November, soon after arrival from fall migration, and deaths continued into January during both episodes. In total, 29 eagles died at or near DeGray Lake in the winter of 1994-1995 and 26 died in the winter of 1996-1997; no eagle mortality was noted during the same months of the intervening winter or in the earlier history of the lake. During the mortality events, sick eagles were observed overflying perches or colliding with rock walls. Signs of incoordination and limb paresis were also observed in American coots ( Fulica americana ) during the episodes of eagle mortality, but mortality in coots was minimal. No consistent abnormalities were seen on gross necropsy of either species. No microscopic findings in organs other than the central nervous system (CNS) could explain the cause of death. By light microscopy, all 26 eagles examined and 62/77 (81%) coots had striking, diffuse, spongy degeneration of the white matter of the CNS. Vacuolation occurred in all myelinated CNS tissue, including the cerebellar folia and medulla oblongata, but was most prominent in the optic tectum. In the spinal cord, vacuoles were concentrated near the gray matter, and occasional swollen axons were seen. Vacuoles were uniformly present in optic nerves but were not evident in the retina or peripheral or autonomic nerves. Cellular inflammatory response to the lesion was distinctly lacking. Vacuoles were 8-50 microns in diameter and occurred individually, in clusters, or in rows. In sections stained by luxol fast blue/periodic acid-Schiff stain, the vacuoles were delimited and transected by myelin strands. Transmission electron microscopy revealed intramyelinic vacuoles formed in the myelin sheaths by splitting of one or more myelin lamellae at the intraperiodic line. This lesion is characteristic of toxicity from hexachlorophene, triethyltin, bromethalin, isonicotinic acid hydrazide, and certain exotic plant toxins; however, despite exhaustive testing, no etiology was determined for the DeGray Lake mortality events. This is the first report of vacuolar myelinopathy associated with spontaneous mortality in wild birds.

Arkansas↗
USGS2009

Postmortem diagnostic investigation of disease in free-ranging marine turtle populations: A review of common pathologic findings and protocols

Over the past few decades, there have been increasing numbers of reports of diseases in marine turtles. Furthermore, in recent years, there have been documented instances of apparently new diseases emerging in these species of which the etiology and/or pathogenesis remain unknown. These instances i) raise concern for the survival of marine turtles, and ii) question the health and stability of the benthic marine environments in which turtles live. Knowledge of common disease processes and pathologic changes in lesions, along with a standardized approach to postmortem and sample collection are required to document and understand the host-agent-environment interactions in marine turtle health. This review combines, for the first time, a standardized approach to the postmortem of marine turtles for veterinary clinicians, with a concurrent descriptive review of the gross and microscopic pathologic changes in lesions commonly seen.

Journal of Veterinary Diagnostic Investigation↗
USGS2018

Delindeite titanosilicates and lourenswalsite, two new from the Magnet Cove region, Arkansas

Delindeite and lourenswalsite are two new barium titanosilicate minerals found as microscopic crystals in miarolitic cavities in nepheline syenite in the Diamond Jo quarry, Hot Spring County, Arkansas. Delindeite is found as aggregates of flake-like crystallites in compact spherules, light pinkish grey in colour, with a resinous, pearly lustre. The flakes are biaxial positive with average n ∼ 1.813; the measured density is 3.3 g/cm 3 . Electron diffraction revealed a monoclinic unit cell in space group C 2 l m or subgroup, with a = 21.617(13), b = 6.816(5), c = 5.383(3) Å, β = 94.03(5)° (refined from X-ray powder data). The strongest X-ray lines are ( hkl , d obs , I rel ): (200, 10.80, 100); (311, 3.54, 24); (6̄01, 3.083, 28); (601, 2.888, 31); (2̄21, 2.806, 20); (910, 2.262,18). The crystals are submicroscopically twinned on (100) and also produce additional continuous diffraction streaks parallel to a *, which double the b and c axes. The formula derived from electron and ion probe analyses (H 2 O by difference), as constrained by density and molar volume data, is approximately (Na,K) 2.7 (Ba,Ca) 4 (Ti,Fe,Al) 6 Si 8 O 26 (OH) 14 , with Na > K, Ba ≫ Ca, Ti ≫ Fe,Al; Z = 1. Lourenswalsite occurs as very thin hexagonal plates in rosettes, silver grey to light brownish grey in colour. The crystals are biaxial negative with very low 2 V angle. Indices of refraction are n α = 1.815, n β ≈ n γ = 1.840; the measured density is 3.17 g/cm = 1.840; the measured density is 3.17 g/cm 3 . X-ray and electron diffraction show a sharp pseudohexagonal lattice with a = 5.244 Å, but extremely diffuse diffraction streaks normal to the hk 0 plane. In these streaks a period of 20.5 Å can be discerned. A hexagonal unit cell with a = 5.244(2) Å, c = 20.49(3) Å can be refined from the powder diffraction data but does not account for some lines, probably because of extreme layer disorder as shown by precession single-crystal patterns. The strong X-ray powder lines are (002, 10.22, 20); (-, 3.93, 20); (111, 2.608, 100); (300, 1.5145, 80); (220, 1.3111, 25). The formula given by microprobe analyses, constrained by density and molar volume data, is approximately (K,Ba) 2 (Ti,Mg,Ca,Fe) 4 (Si,Al,Fe) 6 O 14 (OH) 12 with K > Ba, Ti ≫ (Mg,Ca,Fe), Si > Al > Fe; Z = 1. These minerals are formed under oxidizing weathering conditions, and iron is assumed to be in the Fe 3+ state.

Arkansas↗
USGS2007

Microbial sulfate reduction and metal attenuation in pH 4 acid mine water

Sediments recovered from the flooded mine workings of the Penn Mine, a Cu-Zn mine abandoned since the early 1960s, were cultured for anaerobic bacteria over a range of pH (4.0 to 7.5). The molecular biology of sediments and cultures was studied to determine whether sulfate-reducing bacteria (SRB) were active in moderately acidic conditions present in the underground mine workings. Here we document multiple, independent analyses and show evidence that sulfate reduction and associated metal attenuation are occurring in the pH-4 mine environment. Water-chemistry analyses of the mine water reveal: (1) preferential complexation and precipitation by H2S of Cu and Cd, relative to Zn; (2) stable isotope ratios of 34S/32S and 18O/16O in dissolved SO4 that are 2-3 ??? heavier in the mine water, relative to those in surface waters; (3) reduction/oxidation conditions and dissolved gas concentrations consistent with conditions to support anaerobic processes such as sulfate reduction. Scanning electron microscope (SEM) analyses of sediment show 1.5-micrometer, spherical ZnS precipitates. Phospholipid fatty acid (PLFA) and denaturing gradient gel electrophoresis (DGGE) analyses of Penn Mine sediment show a high biomass level with a moderately diverse community structure composed primarily of iron- and sulfate-reducing bacteria. Cultures of sediment from the mine produced dissolved sulfide at pH values near 7 and near 4, forming precipitates of either iron sulfide or elemental sulfur. DGGE coupled with sequence and phylogenetic analysis of 16S rDNA gene segments showed populations of Desulfosporosinus and Desulfitobacterium in Penn Mine sediment and laboratory cultures. ?? 2007 Church et al; licensee BioMed Central Ltd.

Geochemical Transactions↗
USGS2024

The influence of vesicularity on grain morphology in basaltic pyroclasts from Mauna Loa and Kīlauea volcanoes

Vesicularity of individual pyroclasts from airfall tephra deposits is an important parameter that is commonly measured at basaltic volcanoes. Conventional methods used to determine pyroclast vesicularity on a large number of clasts has the potential to be time consuming, particularly when rapid analysis is required. Here we propose dynamic image analysis on two-dimensional (2D) projection shapes of crushed pyroclasts from tephra deposits as a new method to estimate vesicularity. This method relies on the influence of vesicles and uses grain morphology as a proxy for vesicle size and abundance. Pyroclasts from a variety of basaltic tephra deposits from the volcanoes of Mauna Loa and Kīlauea were analyzed. Vesicularities between 52–98% were measured via nitrogen-gas pycnometry. The same pyroclasts were then crushed and sieved, and their grain shapes measured using dynamic image analysis on a CAMSIZER®. This yields values for the mean sphericity, elongation, compactness, and Krumbein roundness of the grains. Our data show that grains become increasingly irregular with increasing vesicularity, with the degree of correlation between shape parameters and vesicularity depending on the size of measured grains. Shape irregularities in small grains (60–250 µm) are mostly area-based, with elongation being the best vesicularity indicator, whereas shape irregularities in large grains (250–700 µm) are mostly perimeter-based, with Krumbein roundness as the best vesicularity indicator. Using mean shape parameter values with all grain sizes included, grain elongation is the most well-correlated shape parameter with vesicularity, with the best fitted model explaining 76% of variation in the observations. Microscope images of thin sections of intact pyroclasts, as well as from crushed pyroclasts, were analyzed using CSDCorrections 1.6 software in ImageJ to find local vesicularity, vesicle size, grain size, grain elongation, and vesicle spatial distribution by stereological conversion. Observed correlation between grain shape and vesicularity can be explained by the local effect of vesicles on the shape of the solid structure in between those vesicles. Grain shape depends not only on vesicularity, but also on vesicle to grain size ratio and the spatial distribution of vesicles. The influence of vesicles on grain shape is best captured by grains with the size of the solid structure in between vesicles, which generally increases with decreasing vesicularity. Dynamic image analysis is a useful tool to quickly gauge vesicularity, which could be used in near-real-time during an eruption response. However, this method is best suited for highly vesicular (> 80%) basaltic pyroclasts from tephra deposits with few microlites and phenocrysts. Further research on crushing techniques, optimum grain size for shape measurements, and Krumbein roundness measurements for the grain size range of 250–700 µm might enable application of this method to lower vesicularity pyroclasts.

Hawaii↗
USGS1981

Reservoir properties of submarine- fan facies: Great Valley sequence, California

Submarine-fan sandstones of the Great Valley sequence west of the Sacramento Valley, California, have low porosities and permeabilities (64 samples averaged 10.1% porosity and 0.87 millidarcies permeability). However, petrography and scanning electron microscope studies indicate that most sands in almost all submarine fan environments are originally porous and permeable. Thin turbidite sandstones deposited in areas dominated by shale in outer-fan, basin-plain, and overbank environments are cemented mainly by calcite; shale dewatering is inferred to contribute to rapid cementation early in the burial process. Sands deposited in inner- and middle-fan channels within interchannel and fan-fringe environments that contain only thin shale beds have small percentages of intergranular matrix or cement. The original porosity is substantially reduced mechanically at shallow depths and by pressure solution at deeper levels. Permeability decreases systematically with increasing age of the rocks, presumably as a result of increasing burial depths. Computer-run stepwise regression analyses show that the porosity is inversely related to the percentage of calcite cement. Such parameters as the contents of quartz, feldspar, and unstable rock fragments have no correlative effect on either porosity or permeability. The results reported here indicate original porosity and permeability can be high in deep-water submarine fans and that fan environments dominated by sand (with high sand/shale ratios) are more likely to retain higher porosity and permeability to greater depths than sand interbedded with thick shale sequences.

Journal of Sedimentary Petrology↗
USGS2015

Curiosity’s robotic arm-mounted Mars Hand Lens Imager (MAHLI): Characterization and calibration status

MAHLI (Mars Hand Lens Imager) is a 2-megapixel, Bayer pattern color CCD camera with a macro lens mounted on a rotatable turret at the end of the 2-meters-long robotic arm aboard the Mars Science Laboratory rover, Curiosity. The camera includes white and longwave ultraviolet LEDs to illuminate targets at night. Onboard data processing services include focus stack merging and data compression. Here we report on the results and status of MAHLI characterization and calibration, covering the pre-launch period from August 2008 through the early months of the extended surface mission through February 2015. Since landing in Gale crater in August 2012, MAHLI has been used for a wide range of science and engineering applications, including distinction among a variety of mafic, siliciclastic sedimentary rocks; investigation of grain-scale rock, regolith, and eolian sediment textures and structures; imaging of the landscape; inspection and monitoring of rover and science instrument hardware concerns; and supporting geologic sample selection, extraction, analysis, delivery, and documentation. The camera has a dust cover and focus mechanism actuated by a single stepper motor. The transparent cover was coated with a thin film of dust during landing, thus MAHLI is usually operated with the cover open. The camera focuses over a range from a working distance of 2.04 cm to infinity; the highest resolution images are at 13.9 µm per pixel; images acquired from 6.9 cm show features at the same scale as the Mars Exploration Rover Microscopic Imagers at 31 µm/pixel; and 100 µm/pixel is achieved at a working distance of ~26.5 cm. The very highest resolution images returned from Mars permit distinction of high contrast silt grains in the 30–40 µm size range. MAHLI has performed well; the images need no calibration in order to achieve most of the investigation’s science and engineering goals. The positioning and repeatability of robotic arm placement of the MAHLI camera head have been excellent on Mars, often with the hardware arriving within millimeters of expectation. Stability while imaging is usually such that the images are sharply focused; some exceptions—thought to result from motion induced by wind—have occurred during longer exposure LED-illuminated night imaging. Image calibration includes relative radiometric correction by removal of dark current and application of a flat field. Dark current is negligible to minor for typical daytime exposure durations and temperatures at the Gale field site. A pre-launch flat field product is usually applied to the data but new products created from images acquired by MAHLI of the Martian sky are superior and can provide a relative radiometric accuracy of ~6%. The camera lens imparts negligible distortion to its images; camera models derived from pre-launch data, with CAHV and CAHVOR parameters captured in their archived labels, can be applied to the images for analysis. MAHLI data and derived products, including pre-launch images, are archived with the NASA Planetary Data System (PDS). This report includes supplementary calibration and characterization data that are not available in the PDS archive (see supplement file MAHLITechRept0001_Supplement.zip).

MSL MAHLI Technical Report↗
USGS2024

Scanning electron microscopy of clays and clay minerals

The scanning electron microscope (SEM) proves to be ideally suited for studying the configuration, texture, and fabric of clay samples. Growth mechanics of crystalline units—interpenetration and interlocking of crystallites, crystal habits, twinning, helical growth, and topotaxis—also are uniquely revealed by the SEM. Authigenic kaolins make up the bulk of the examples because their larger crystallite size, better crystallinity, and open texture make them more suited to examination by the SEM than most other clay mineral types.

Clays and Clay Minerals↗