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Influences of introduced plague on North American mammals: Implications from ecology of plague in Asia

Intercontinental movements of invasive species continue to modify the world's ecosystems. The plague bacterium ( Yersinia pestis ) has colonized and altered animal communities worldwide but has received much more attention as a human pathogen. We reviewed studies on the ecology of Y. pestis in ancient foci of central Asia and in western North America, where the bacterium apparently has become established much more recently. Although rodent populations on both continents are affected dramatically by epizootics of plague, the epidemiologically important species of Asia demonstrate resistance in portions of their populations, whereas those of North America are highly susceptible. Individual variation in resistance, which is widespread in Asian rodents and allows a microevolutionary response, has been documented in few North American species of rodents. Plague increases costs of sociality and coloniality in susceptible hosts, increases benefits of disease resistance in general, and increases benefits of adaptability to variable environments for species at higher trophic levels. Prairie dogs ( Cynomys ) epitomize taxa with high risk to plague because prairie dogs have uniformly low resistance to plague and are highly social. Relationships to plague are poorly understood for many North American rodents, but more than one-half of the species of conservation concern occur within the geographic range of plague.

Journal of Mammalogy

Strategic approach for bird restoration evaluation - FY 2025 annual report

The Deepwater Horizon oil spill (hereafter “ spill ”) resulted in an estimated loss of 56,141–102,399 birds across 93 species along the U.S. Gulf of America coast. Injured species included those that nest locally along the northern Gulf of America coast as well as species that nest hundreds or thousands of kilometers outside of the region. The breadth of injury and the expansive geographic distribution of birds affected by the spill necessitated implementation of numerous and diverse projects designed to restore the injury of all affected bird species. As of September 2025, the Trustees, who are authorized to act on behalf of the public to restore injuries caused by the spill , have approved 39 projects, amounting to >60% of the total funds specifically allocated for bird restoration (i.e., Bird Restoration Type funding). Strategic allocation of remaining Bird Restoration Type funding is necessary to ensure that restoration of all injured bird species is achieved. An essential component of planning for future restoration is understanding the progress made from restoration actions conducted to date. The purpose of this project is to develop a plan that assesses the current restoration progress for each of the 93 injured species based on available data. The restoration assessment plan will be derived from a data gap analysis that identifies species for which data may be insufficient to assess restoration progress. This project will also allow Trustees to review and update the indicators of restoration success developed for injured bird species (e.g., population counts, reproduction metrics) that are used to evaluate restoration progress.

Annual Report

Monitoring pesticides in wildlife

Early in the development of the wildlife monitoring program, certain criteria were recognized as being important in the selection of species of wild animals suitable for pesticide monitoring purposes. Ideally, the forms selected should be geographically well distributed, and they should be reasonably abundant and readily available for sampling. In addition, animals occurring near the top of food chains have the capacity to reflect residues in organisms occurring at lower levels in the same food chains. Based on these criteria, species chosen for monitoring include the starling (Sturnus vulgaris), mallard (Anas platyrhynchos) and black ducks (Anas rubripes), and the bald eagle (Haliaeetus leucocephalus). The black duck is substituted for the mallard in States where suitable numbers of mallards cannot be obtained. The Bureau of Sport Fisheries and Wildlife is held responsible for the execution of the wildlife portion of the National Pesticide Monitoring Program. The primary objective is to ascertain on a nationwide basis and independent of specific treatments the levels and trends of certain pesticidal chemicals and other pollutants in the bodies of selected forms of wildlife. The program was first described by Johnson et al. (4) in 1967. The purpose of this report is to update and redescribe the wildlife monitoring program and briefly review accomplishments.

Pesticides Monitoring Journal

Sea-level rise modeling handbook: Resource guide for coastal land managers, engineers, and scientists

Global sea level is rising and may accelerate with continued fossil fuel consumption from industrial and population growth. In 2012, the U.S. Geological Survey conducted more than 30 training and feedback sessions with Federal, State, and nongovernmental organization (NGO) coastal managers and planners across the northern Gulf of Mexico coast to evaluate user needs, potential benefits, current scientific understanding, and utilization of resource aids and modeling tools focused on sea-level rise. In response to the findings from the sessions, this sea-level rise modeling handbook has been designed as a guide to the science and simulation models for understanding the dynamics and impacts of sea-level rise on coastal ecosystems. The review herein of decision-support tools and predictive models was compiled from the training sessions, from online research, and from publications. The purpose of this guide is to describe and categorize the suite of data, methods, and models and their design, structure, and application for hindcasting and forecasting the potential impacts of sea-level rise in coastal ecosystems. The data and models cover a broad spectrum of disciplines involving different designs and scales of spatial and temporal complexity for predicting environmental change and ecosystem response. These data and models have not heretofore been synthesized, nor have appraisals been made of their utility or limitations. Some models are demonstration tools for non-experts, whereas others require more expert capacity to apply for any given park, refuge, or regional application. A simplified tabular context has been developed to list and contrast a host of decision-support tools and models from the ecological, geological, and hydrological perspectives. Criteria were established to distinguish the source, scale, and quality of information input and geographic datasets; physical and biological constraints and relations; datum characteristics of water and land components; utility options for setting sea-level rise and climate change scenarios; and ease or difficulty of storing, displaying, or interpreting model output. Coastal land managers, engineers, and scientists can benefit from this synthesis of tools and models that have been developed for projecting causes and consequences of sea-level change on the landscape and seascape.

Professional Paper

Implementation plan of the National Cooperative Geologic Mapping Program strategy—Great Lakes (Central Lowland and Superior Upland Physiographic Provinces)

Introduction The U.S. Geological Survey (USGS) National Cooperative Geologic Mapping Program (NCGMP) has published a strategic plan entitled “Renewing the National Cooperative Geologic Mapping Program as the Nation’s Authoritative Source for Modern Geologic Knowledge”. This plan provides the following vision, mission, and goals for the program for the years 2020–30: Vision: create an integrated, three-dimensional (3D), digital geologic map of the United States. Mission: characterize, interpret, and disseminate a national geologic framework model of the Earth through geologic mapping. Goal: focus on geological mapping as a core function of the USGS within the long-term vision and mission of creating a digital geologic map and geologic framework model of the Nation. To achieve the goal outlined in the strategic plan, the NCGMP has developed an Implementation Plan. This Implementation Plan will guide annual reviews of the FEDMAP component (that is, the component of the USGS NCGMP that funds geologic mapping by USGS geologists) of the NCGMP projects described in the plan and the development of the annual FEDMAP prospectus, which will ensure the application of the NCGMP strategy. This publication is part of the Implementation Plan of the NCGMP strategy and addresses the following three major topics: continued development of a consistent National geologic map and database; the major unanswered geologic questions in the region; and the societal concerns associated with these geologic questions, such as hazards, geologic and hydrologic resources, and environmental issues. The regions used in this chapter correspond with physiographic divisions of the United States as defined by Fenneman. Physiographic divisions are delineated on the basis of topography, and to a lesser extent, the geologic structure and history. The physiographic divisions are subdivided into physiographic provinces, and the physiographic provinces are subdivided into physiographic sections. Fenneman’s physiographic divisions of the United States provide a robust and useful spatial organization for delineating large geographic regions of the United States for various scientific and industrial applications.

Great Lakes (Central Lowland and Superior Upland P

Spatial digital database for the tectonic map of southeast Arizona

A spatial database was created for Drewes' (1980) tectonic map of southeast Arizona: this database supercedes Drewes and others (2001, ver. 1.0). Staff and a contractor at the U.S. Geological Survey in Tucson, Arizona completed an interim digital geologic map database for the east part of the map in 2001, made revisions to the previously released digital data for the west part of the map (Drewes and others, 2001, ver. 1.0), merged data files for the east and west parts, and added additional data not previously captured. Digital base map data files (such as topography, roads, towns, rivers and lakes) are not included: they may be obtained from a variety of commercial and government sources. This digital geospatial database is one of many being created by the U.S. Geological Survey as an ongoing effort to provide geologic information in a geographic information system (GIS) for use in spatial analysis. The resulting digital geologic map database can be queried in many ways to produce a variety of geologic maps and derivative products. Because Drewes' (1980) map sheets include additional text and graphics that were not included in this report, scanned images of his maps (i1109_e.jpg, i1109_w.jpg) are included as a courtesy to the reader. This database should not be used or displayed at any scale larger than 1:125,000 (for example, 1:100,000 or 1:24,000). The digital geologic map plot files (i1109_e.pdf and i1109_w.pdf) that are provided herein are representations of the database (see Appendix A). The map area is located in southeastern Arizona (fig. 1). This report describes the map units (from Drewes, 1980), the methods used to convert the geologic map data into a digital format, the ArcInfo GIS file structures and relationships, and explains how to download the digital files from the U.S. Geological Survey public access World Wide Web site on the Internet. The manuscript and digital data review by Helen Kayser (Information Systems Support, Inc.) is greatly appreciated.

Arizona

Deposits of the manganese oxides

One of the problems of the wartime program of studies of domestic manganese deposits concerned the identification of, and modes of origin of the manganese oxide minerals. Of the hundreds of specimens of the oxides collected in the United States, the minerals of about 250 specimens were identified by X-ray analysis; complete chemical analyses were made of about 35 specimens and partial analyses of about 150 specimens. This report presents the conclusions that arise out of a review of the geologic environment under which the specimens were found. One conclusion of this review concerns the supergene vs. hypogene origin of the oxides. In order to reach conclusions concerning the supergene and hypogene origin of the 33 oxides of manganese recognized thus far, it was necessary to define the criteria that seemed usable.One group of oxides appears to be persistently supergene: groutite, hydrohausmannite, lithiophorite, rancieite, hetaerolite, hydrohetaerolite, chalcophanite, crednerite, woodruffite, and wad. Another group of oxides appears to have been formed only by hypogene processes: manganosite, hausmannite, pyrochroite, bixbyite, galaxite, jacobsite, franklinite, pyrophanite, and ilmenite. A third group of oxides appear to have been formed by supergene processes in some places and by hypogene processes in other places: manganite, pyrolusite, ramsdellite, cryptomelane, psilomelane, hollandite, braunite, and coronadite.Another conclusion concerns a genetic relation between: (1) veins of manganese oxides in the southwest, largely in Tertiary volcanic rocks, (2) bodies of oxides in travertine aprons near active hot springs, and inactive Pleistocene springs, and (3) stratified oxides, largely in late Tertiary sedimentary rocks in the southwest. From the features of these three groups of deposits of oxides and their geologic and geographic distribution, it appears that hot water from great depth rose on fractures in areas of volcanic activity, deposited oxides in the fractures, appeared at the surface as hot springs, deposited oxides in the aprons near the springs and continuing to local basins, deposited manganese oxides with local debris as persistent beds in sediments, partly or wholly of volcanic origin.

Economic Geology

U.S. Geological Survey Pollinator Science Strategy, 2025–35—A Review and Look Forward

This “U.S. Geological Survey Pollinator Science Strategy, 2025–35—A Review and Look Forward” (“Pollinator Science Strategy”) describes the science vision of the U.S. Geological Survey (USGS) to support management, conservation, and policy decisions on animal pollinators and their habitats. As the science arm of the Department of the Interior, the USGS has a primary role in providing scientific information to natural resource managers and policymakers across the United States. This “Pollinator Science Strategy” was drafted by a team of USGS pollinator researchers and was further developed through feedback from Federal, State, Tribal, nongovernmental organizations, and industry partners. This “Pollinator Science Strategy” highlights the USGS’s role in the research to promote healthy pollinator populations and address partner information gaps so they can make more informed management decisions. By outlining the importance of USGS science in addressing the information needs of other agencies, organizations, and the public, the “Pollinator Science Strategy” reaffirms the USGS’s commitment to pollinator research and showcases our research priorities for 2025–35. With more than 300 research centers nationally, the USGS is equipped to address pollinator science across scales of complexity and geographic range. USGS pollinator science is organized according to the following five thematic areas: Assessing species ecology, distributions, and natural history requirements. Tracking species status and trends. Understanding species threats and stressors. Informing restoration and management actions. Developing novel methods for improving pollinator research, monitoring, and population outcomes that can benefit our Nation. Our pollinator information products and associated data are made widely available to the public to ensure scientific transparency and accessibility. This “Pollinator Science Strategy” concludes with several research goals that the USGS will work towards from 2025 to 2035, representing our vision for USGS science. These research goals include synthesizing and modernizing the latest information on pollinator threats, developing research that assists managers with habitat design and restoration, providing training to partners on native bee identification and monitoring design, and developing new technologies for assessing the status and trends of our nation’s pollinators.

Circular

Achievements and prospects of global broadband seismographic networks after 30 years of continuous geophysical observations

Global seismographic networks (GSNs) emerged during the late nineteenth and early twentieth centuries, facilitated by seminal international developments in theory, technology, instrumentation, and data exchange. The mid- to late-twentieth century saw the creation of the World-Wide Standardized Seismographic Network (1961) and International Deployment of Accelerometers (1976), which advanced global geographic coverage as seismometer bandwidth increased greatly allowing for the recording of the Earth's principal seismic spectrum. The modern era of global observations and rapid data access began during the 1980s, and notably included the inception of the GEOSCOPE initiative (1982) and GSN (1988). Through continual improvements, GEOSCOPE and the GSN have realized near-real time recording of ground motion with state-of-art data quality, dynamic range, and timing precision to encompass 180 seismic stations, many in very remote locations. Data from GSNs are increasingly integrated with other geophysical data (e.g., space geodesy, infrasound and Interferometric Synthetic Aperture Radar). Globally distributed seismic data are critical to resolving crust, mantle, and core structure; illuminating features of the plate tectonic and mantle convection system; rapid characterization of earthquakes; identification of potential tsunamis; global nuclear test verification; and provide sensitive proxies for environmental changes. As the global geosciences community continues to advance our understanding of Earth structure and processes controlling elastic wave propagation, GSN infrastructure offers a springboard to realize increasingly multi-instrument geophysical observatories. Here, we review the historical, scientific, and monitoring heritage of GSNs, summarize key discoveries, and discuss future associated opportunities for Earth Science.

Reviews of Geophysics

Physical oceanography of continental shelves

Knowledge of the physical oceanography of continental shelves has increased tremendously in recent years, primarily as a result of new current and hydrographic measurements made in locations where no comparable measurements existed previously. In general, observations from geographically distinct continental shelves have shown that the nature of the flow may vary considerably from region to region. Although some characteristics, such as the response of currents to wind forcing, are common to many shelves, the relative importance of various physical processes in influencing the shelf flow field frequently is different. In the last several years, the scientific literature on shelf studies has expanded rapidly, with that for separate regions, to some extent, developing independently because of the variable role played by different physical effects.

Reviews of Geophysics and Space Physics

A portfolio approach to evaluating natural hazard mitigation policies: An application to lateral-spread ground failure in coastal California

In the past, efforts to prevent catastrophic losses from natural hazards have largely been undertaken by individual property owners based on site—specific evaluations of risks to particular buildings. Public efforts to assess community vulnerability and encourage mitigation have focused on either aggregating site—specific estimates or adopting standards based upon broad assumptions about regional risks. This paper develops an alternative, intermediate—scale approach to regional risk assessment and the evaluation of community mitigation policies. Properties are grouped into types with similar land uses and levels of hazard, and hypothetical community mitigation strategies for protecting these properties are modeled like investment portfolios. The portfolios consist of investments in mitigation against the risk to a community posed by a specific natural hazard. and are defined by a community's mitigation budget and the proportion of the budget invested in locations of each type. The usefulness of this approach is demonstrated through an integrated assessment of earthquake—induced lateral—spread ground failure risk in the Watsonville, California area. Data from the magnitude 6.9 Loma Prieta earthquake of 1989 are used to model lateral—spread ground failure susceptibility. Earth science and economic data are combined and analyzed in a Geographic Information System (CIS). The portfolio model is then used to evaluate the benefits of mitigating the risk in different locations. Two mitigation policies, one that prioritizes mitigation by land use type and the other by hazard zone, are compared with a status quo policy of doing no further mitigation beyond that which already exists. The portfolio representing the hazard zone rule yields a higher expected return than the land use portfolio does; however, the hazard zone portfolio experiences a higher standard deviation. Therefore, neither portfolio is clearly preferred. The two mitigation policies both reduce expected losses and increase overall expected community wealth compared to the status quo policy.

California

Global trends in emerging viral diseases of wildlife origin

Fifty years ago, infectious diseases were rarely considered threats to wildlife populations, and the study of wildlife diseases was largely a neglected endeavor. Furthermore, public health leaders at that time had declared that “it is time to close the book on infectious diseases and the war against pestilence won,” a quote attributed to Dr. William H. Stewart in 1967. There is some debate whether he actually said these words; however, they reflect the widespread belief at that time (Spellberg, 2008). Leap forward to today, and the book on infectious diseases has been dusted off. There is general consensus that the global environment favors the emergence of infectious diseases, and in particular, diseases of wildlife origin (Taylor et al., 2001). Examples of drivers of these infectious diseases include climate and landscape changes, human demographic and behavior changes, global travel and trade, microbial adaptation, and lack of appropriate infrastructure for wildlife disease control and prevention (Daszak et al., 2001). The consequences of these emerging diseases are global and profound with increased burden on the public health system, negative impacts on the global economy and food security, declines and extinctions of wildlife species, and subsequent loss of ecosystem integrity. For example, 35 million people are currently living with HIV infection globally (http://www.who.int/gho/hiv/en); 400 million poultry have been culled since 2003 as a result of efforts to control highly pathogenic H5N1 avian influenza (http://www.fao.org/avianflu/en/index.html), and there are increasing biological and ecological consequences. Examples of health threats to biodiversity include the “spillover” of human diseases to great ape populations (Köndgen et al., 2008), the near-extirpation of the black-footed ferret from canine distemper and sylvatic plague (for a review see Abbott et al., 2012), and threats to Hawaiian forest birds from introduced pathogens such as avian malaria and avian pox (van Riper et al., 1986, 2002). There are also newly discovered pathogens or diseases that have resulted in population declines, and global extinctions of several species. Examples include Batrachochytrium dendrobatidis, which causes a cutaneous fungal infection of amphibians and is linked to declines of amphibians globally (Kriger and Hero, 2009); and recently discovered Pseudogymnoascus (Geomyces) destructans, the etiologic agent of white-nose syndrome (WNS), which has caused precipitous declines of North American bat species (Blehert et al., 2009). Furthermore, there is increasing evidence of the subsequent impacts on human and ecosystem health; for example, increasing risk of exposure to Lyme disease as a consequence of decreased biodiversity (LoGiudice et al., 2003) as well as the economic cost of the loss of bats due to decreased insect control services (Boyles et al., 2011). Figure A12-1 is a timeline of important diseases investigated by the U.S. Geological Survey since the 1970s, which illustrates three factors: 1. The unprecedented emergence of new pathogens and geographic spread of known pathogens since the 1990s; 2. Diseases are increasingly causing large-scale, negative impacts on wildlife populations and spreading over larger geographic areas rather than remaining localized; and 3. Diseases are increasingly of concern for multiple sectors, including public health, agriculture and wildlife management agencies. Of increasing concern are these novel diseases such as WNS as they are hard to anticipate, particularly devastating to human health or wildlife populations, challenging to manage, spread over large geographic areas in short time periods, and may result in ecological ripple effects that are difficult to predict. The following article provides examples of recently emerged viral diseases of wildlife origin. The examples have been selected to illustrate the drivers of emerging viral diseases, both novel pathogens and previously known diseases, the impacts of these diseases, as well as the role of wildlife both as “villains” or reservoirs as well as “victims” of these viral diseases. The article also discusses potential management strategies for emerging viral diseases in wildlife populations and future science directions in wildlife health to prevent, prepare, respond to, and recover from these disease events. Finally, the concept of One Health and its potential role in developing solutions to these issues of mutual concern is discussed.

Conference Paper

Tracking animals in freshwater with electronic tags: past, present and future

Considerable technical developments over the past half century have enabled widespread application of electronic tags to the study of animals in the wild, including in freshwater environments. We review the constraints associated with freshwater telemetry and biologging and the technical developments relevant to their use. Technical constraints for tracking animals are often influenced by the characteristics of the animals being studied and the environment they inhabit. Collectively, they influence which and how technologies can be used and their relative effectiveness. Although radio telemetry has historically been the most commonly used technology in freshwater, passive integrated transponder (PIT) technology, acoustic telemetry and biologgers are becoming more popular. Most telemetry studies have focused on fish, although an increasing number have focused on other taxa, such as turtles, crustaceans and molluscs. Key technical developments for freshwater systems include: miniaturization of tags for tracking small-size life stages and species, fixed stations and coded tags for tracking large samples of animals over long distances and large temporal scales, inexpensive PIT systems that enable mass tagging to yield population- and community-level relevant sample sizes, incorporation of sensors into electronic tags, validation of tag attachment procedures with a focus on maintaining animal welfare, incorporation of different techniques (for example, genetics, stable isotopes) and peripheral technologies (for example, geographic information systems, hydroacoustics), development of novel analytical techniques, and extensive international collaboration. Innovations are still needed in tag miniaturization, data analysis and visualization, and in tracking animals over larger spatial scales (for example, pelagic areas of lakes) and in challenging environments (for example, large dynamic floodplain systems, under ice). There seems to be a particular need for adapting various global positioning system and satellite tagging approaches to freshwater. Electronic tagging provides a mechanism to collect detailed information from imperilled animals and species that have no direct economic value. Current and future advances will continue to improve our knowledge of the natural history of aquatic animals and ecological processes in freshwater ecosystems while facilitating evidence-based resource management and conservation.

Animal Biotelemetry

Palaeontological signatures of the Anthropocene are distinct from those of previous epochs

The “Great Acceleration” beginning in the mid-20th century provides the causal mechanism of the Anthropocene, which has been proposed as a new epoch of geological time beginning in 1952 CE. Here we identify key parameters and their diagnostic palaeontological signals of the Anthropocene, including the rapid breakdown of discrete biogeographical ranges for marine and terrestrial species, rapid changes to ecologies resulting from climate change and ecological degradation, the spread of exotic foodstuffs beyond their ecological range, and the accumulation of reconfigured forest materials such as medium density fibreboard (MDF) all being symptoms of the Great Acceleration. We show: 1) how Anthropocene successions in North America, South America, Africa, Oceania, Europe, and Asia can be correlated using palaeontological signatures of highly invasive species and changes to ecologies that demonstrate the growing interconnectivity of human systems; 2) how the unique depositional settings of landfills may concentrate the remains of organisms far beyond their geographical range of environmental tolerance; and 3) how a range of settings may preserve a long-lived, unique palaeontological record within post-mid-20th century deposits. Collectively these changes provide a global palaeontological signature that is distinct from all past records of deep-time biotic change, including those of the Holocene.

Earth Science Reviews

The toxicological geochemistry of Earth materials: An overview of processes and the interdisciplinary methods used to understand them

A broad spectrum of earth materials have been linked to, blamed for, and/or debated as sources for disease. In some cases, the links are clear. For example, excessive exposures to mineral dusts have long been recognized for their role in diseases such as: asbestosis, mesothelioma, and lung cancers (asbestos); silicosis and lung cancer (silica dusts); and coal-workers pneumoconiosis (coal dust). Lead poisoning, particularly in toddlers and young children, has been conclusively linked to involuntary ingestion of soils or other materials contaminated with lead-rich paint particles, leaded gasoline combustion byproducts, and some types of lead-rich mine wastes or smelter particulates. Waters with naturally elevated arsenic contents are common in many regions of the globe, and consumption of these waters has been documented as the source of arsenic-related diseases affecting thousands of people in south Asia and other regions. Exposure to dusts or soils containing pathogens has been documented as the cause of regionally common diseases such as valley fever (coccidioidomycosis) and much rarer diseases such as anthrax. Links between many other earth materials and specific diseases, although suspected, are less clear or are debated. For example, it has been suggested that geographic clusters of diseases such as leukemia are related to exposures to waters or atmospheric particulates containing organic or metal contaminants; however, for many clusters the exact causal relationships between disease and environmental exposure are difficult to prove conclusively. Even for many diseases in which the causal relationship is clear, such as in asbestosis and mesothelioma triggered by asbestos exposure, the minimum exposures needed to trigger disease, the influence of genetic factors, and the exact mechanisms of toxicity are still incompletely understood and are the focus of considerable debate within the public health community. Hence, understanding the health effects resulting from occupational and environmental exposures to a wide variety of earth materials remains a very active and fruitful area of research.

Reviews in Mineralogy and Geochemistry

Review of Phosphorus Control Measures in the United States and Their Effects on Water Quality

Historical information on phosphorus loadings to the environment and the effect on water quality are summarized in this report, which was produced as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program. Phosphorus is a water-quality constituent of concern because it is often the limiting nutrient responsible for accelerated eutrophication in water bodies. Phosphorus inputs to the environment have increased since 1950 as the use of phosphate fertilizer, manure, and phosphate laundry detergent increased; however, the manufacture of phosphate detergent for household laundry was ended voluntarily in about 1994 after many States had established phosphate detergent bans. Total phosphorus concentrations in raw wastewater effluent contained about 3 milligrams per liter of total phosphorus during the 1940's, increased to about 11 milligrams per liter at the height of phosphate detergent use (1970), and have currently declined to about 5 milligrams per liter. However, in some cases, tertiary wastewater treatment still is needed to effectively improve water quality of streams. Downward trends in phosphorus concentrations since 1970 have been identified in many streams, but median total phosphorus concentrations still exceed the recommended limit of 0.1 milligram per liter across much of the Nation. Data from the NAWQA Program are representative of a variety of phosphorus-control measures, and, therefore, may be used to evaluate the effects of various control strategies. Current areas of concern include: evaluation of the effects of increased manure loadings of phosphorus on soil phosphorus and, subsequently, on ground water and subsurface runoff; determination of point-source and nonpoint-source components of phosphorus loads by geographic modeling and hydrologic separation techniques; and development of methods or indices to evaluate nutrient impairment in streams and rivers to serve as a basis for developing phosphorus criteria or standards.

Water-Resources Investigations Report

Southern Salish Sea Habitat Map Series: Admiralty Inlet

In 2010 the Environmental Protection Agency, Region 10 initiated the Puget Sound Scientific Studies and Technical Investigations Assistance Program, designed to support research in support of implementing the Puget Sound Action Agenda. The Action Agenda was created in response to Puget Sound having been designated as one of 28 estuaries of national significance under section 320 of the U.S. Clean Water Act, and its overall goal is to restore the Puget Sound Estuary's environment by 2020. The Southern Salish Sea Mapping Project was funded by the Assistance Program request for proposals process, which also supports a large number of coastal-zone- and ocean-management issues. The issues include the recommendations of the Marine Protected Areas Work Group to the Washington State Legislature (Van Cleve and others, 2009), which endorses a Puget Sound and coast-wide marine conservation needs assessment, gap analysis of existing Marine Protected Areas (MPA) and recommendations for action. This publication is the first of four U.S. Geological Survey Scientific Investigation Maps that make up the Southern Salish Sea Mapping Project. The remaining three map blocks to be published in the future, located south of Admiralty Inlet, are shown in figure 1. Puget Sound is a deep, fjord-type estuary covering an area of 2,330 km 2 in the Pacific Northwest region of the United States (fig. 1). It is connected to the ocean by the Strait of Juan de Fuca, a turbulent passage approximately 160 km in length and 22 km wide at its west end, expanding to over 40 km wide at its east end (Thomson, 1994). During the Pleistocene, the area was occupied several times by lobes of continental ice, resulting in a complex basin-fill of glacial and interglacial deposits that are locally as thick as 1100 m (Johnson and others, 2001). The last glaciation, called the Fraser glaciation, began after 28,800±740 14 C yr B.P. when ice started a slow expansion (Clague, 1981). At peak advance the westward Juan de Fuca lobe reached the edge of the continental shelf through the Juan de Fuca Strait shortly before 14,460±200 14 C yr B.P. (Herzer and Bornhold, 1982). The southward Puget lobe advanced to its terminal position in Puget Sound by around 14,150 14 C yr B.P. (Porter and Swanson, 1998). Ice retreated from its maximum to northern Whidbey Island by 13,650±350 14 C yr B.P. (Dethier and others, 1995). Retreating glaciers resulted in a thick sequence of ice-contact, glacial-marine sediment, and early post-glacial sediments (Linden and Schurrer, 1988). These deposits have experienced the effects of a marine transgression followed by regression, resulting in a sea-level several tens of meters lower than the present day (Linden and Schurrer, 1988). A second transgression brought sea level to about the present level by around 5,470±120 14 C yr B.P. (Clague and others, 1982) establishing the present oceanographic and geologic environment Puget Sound is separated into four interconnected basins; Whidbey, Central (Main), Hood Canal, and South (Thomson, 1994). The Whidbey, Central, and Hood Canal basins are the three main branches of the Puget Sound estuary and are separated from the Strait of Juan de Fuca by a double sill at Admiralty Inlet. The Admiralty Inlet map area includes the Inlet and a portion of the Whidbey Basin (fig. 1). The shallower South Basin is separated by a sill at Tacoma Narrows and is highly branched with numerous finger inlets. Flow within Puget Sound is dominated by tidal currents of as much as 1 m/s at Admiralty Inlet, reducing to approximately 0.5 m/s in the Central Basin (Lavelle and others, 1988). The lack of silt and clay-sized sediments in the Admiralty Inlet map area is likely a result of the strong currents (see Ground-Truth Studies for the Admiralty Inlet Map Area, sheet 3). The subtidal component of flow reaches approximately 0.1 m/s and is driven by density gradients arising from the contrast in salty ocean water at the entrance and freshwater inputs from stream flow (Lavelle and others, 1988). The total freshwater input to Puget Sound is approximately 3.4 x 10 6 m 3 /day, primarily from the Skagit River (Cannon, 1983). The subtidal circulation mostly consists of a two-layered flow in the basins with fresher water exiting at the surface and saltier water entering at depth (Ebbesmeyer and Cannon, 2001). In general, surface waters flow north and deeper waters flow south; variations arise from wind effects that can drive a surface current in the same direction as the wind, and a baroclinic response in the lower layer to about 100-m depth (Matsuura and Cannon, 1997). Oceanographic properties are influenced by temporal forcing parameters such as reduced stream flow during the 2000-01 drought that increased surface salinity and decreased differences between surface and bottom waters (Newton and others, 2003). On offshore seismic-reflection profiles, Pleistocene strata (excluding latest Pleistocene glacial and post-glacial deposits) form a distinct seismic unit, bounded below by pre-Tertiary or Tertiary basement and above by typically flat-lying latest Pleistocene to Holocene deposits that fill in erosional or depositional relief (Johnson and others, 2001). Cores from central Puget Sound have accumulation rates that range from 85 to 1200 mg/cm 2 /yr, or 0.12 to 2.4 cm/yr; the highest accumulation rates are near the southern end of central Puget Sound (Carpenter and others, 1985). Carpenter and others (1985) un-weighted arithmetic mean of accumulation rates for central Puget Sound deeper stations is 480±340 (± one standard deviation) mg/cm 2 /yr. Lavelle and others (1985) also found rates as high as 1200 mg/cm 2 /yr over the past approximately 70 years in cores in the Central Basin off of and north and south of Elliott Bay. Puget Sound basin rates are comparable to rates in midshelf silt deposits on the Washington coast north of the Columbia River (Nittrouer and others, 1979). The deep subtidal (in other words, below SCUBA depths) habitats of Puget Sound are relatively poorly known. A few subtidal surveys exist for several habitat types from the 1960s and 1970s (reviewed in Dethier, 1990), using grab and box core data. The Dethier (1990) review divides habitat up into Coast and Marine Ecological Classification Standard (CMECS) substrate, water column energy, and depth zones but does not attempt to map these habitats, rather it is an inventory of habitats found in the area and the flora and fauna associated with each habitat. The approach of the Southern Salish Sea Mapping project is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data (the undersea equivalent of satellite remote-sensing data in terrestrial mapping), acoustic backscatter, seafloor video, seafloor photography, and bottom-sediment sampling data. This approach is based in part on methods presented and data collection and product needs identified at the Washington State Seafloor Mapping Workshop (Washington State Seafloor Mapping Workshop Steering Committee, 2008), attended by coastal and marine managers and scientists. The map products display seafloor geomorphology and substrate, and identify potential marine benthic habitats. It is emphasized that the more interpretive habitat and geology maps rely on the integration of multiple, new high-resolution datasets and that mapping at small scales would not be possible without such data. Oceanographic current and wave data is not included in this analysis, however, the accompanying geographic information system (GIS) data set is designed and intended to be combined with oceanographic and biologic data sets assembled by others in the future and some of the GIS data has already been incorporated in the unpublished Nature Conservancy Benthic Habitats of Puget Sound database. This publication includes four map sheets, explanatory text, and a descriptive pamphlet. Each map sheet is published as a portable document format (PDF) file. ESRI ArcGIS compatible geotiffs (for example, bathymetry) and shapefiles (for example video observation points) will be available for download in the data catalog associated with this publication (Cochrane, 2015). An ArcGIS Project File with the symbology used to generate the map sheets is also provided. For those who do not own the full suite of ESRI GIS and mapping software, the data can be read using ESRI ArcReader, a free viewer that is available at http://www.esri.com/software/arcgis/arcreader/index.html .

Washington

Highly pathogenic avian influenza is an emerging disease threat to wild birds in North America

Prior to the emergence of the A/goose/Guangdong/1/1996 (Gs/GD) H5N1 influenza A virus, the long-held and well-supported paradigm was that highly pathogenic avian influenza (HPAI) outbreaks were restricted to poultry, the result of cross-species transmission of precursor viruses from wild aquatic birds that subsequently gained pathogenicity in domestic birds. Therefore, management agencies typically adopted a prevention, control, and eradication strategy that included strict biosecurity for domestic bird production, isolation of infected and exposed flocks, and prompt depopulation. In most cases, this strategy has proved sufficient for eradicating HPAI. Since 2002, this paradigm has been challenged with many detections of viral descendants of the Gs/GD lineage among wild birds, most of which have been associated with sporadic mortality events. Since the emergence and evolution of the genetically distinct clade 2.3.4.4 Gs/GD lineage HPAI viruses in approximately 2010, there have been further increases in the occurrence of HPAI in wild birds and geographic spread through migratory bird movement. A prominent example is the introduction of clade 2.3.4.4 Gs/GD HPAI viruses from East Asia to North America via migratory birds in autumn 2014 that ultimately led to the largest outbreak of HPAI in the history of the United States. Given the apparent maintenance of Gs/GD lineage HPAI viruses in a global avian reservoir; bidirectional virus exchange between wild and domestic birds facilitating the continued adaptation of Gs/GD HPAI viruses in wild bird hosts; the current frequency of HPAI outbreaks in wild birds globally, and particularly in Eurasia where Gs/GD HPAI viruses may now be enzootic; and ongoing dispersal of AI viruses from East Asia to North America via migratory birds, HPAI now represents an emerging disease threat to North American wildlife. This recent paradigm shift implies that management of HPAI in domestic birds alone may no longer be sufficient to eradicate HPAI viruses from a given country or region. Rather, agencies managing wild birds and their habitats may consider the development or adoption of mitigation strategies to minimize introductions to poultry, to reduce negative impacts on wild bird populations, and to diminish adverse effects to stakeholders using wildlife resources. The main objective of this review is, therefore, to provide information that will assist wildlife managers in developing mitigation strategies or approaches for dealing with outbreaks of Gs/GD HPAI in wild birds in the form of preparedness, surveillance, research, communications, and targeted management actions. Resultant outbreak response plans and actions may represent meaningful steps of wildlife managers toward the use of collaborative and multi-jurisdictional One Health approaches when it comes to the detection, investigation, and mitigation of emerging viruses at the human-domestic animal-wildlife interface.

Journal of Wildlife Management