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At least 307 records · Page 17Linked to original sources

Effect of outflow on spring and summertime distribution and abundance of larval and juvenile fishes in the upper San Francisco Estuary

We analyzed data on spring and summertime larval and juvenile fish distribution and abundance in the upper San Francisco Estuary (SFE), California between 1995 and 2001. The upper SFE includes the tidal freshwater areas of the Sacramento-San Joaquin Delta downstream to the euryhaline environment of San Pablo Bay. The sampling period included years with a variety of outflow conditions. Fifty taxa were collected using a larval tow net. Two common native species, delta smelt Hypomesus transpacifucus and longfin smelt Spirinchus thaleichthys, and four common alien taxa, striped bass Morone saxatilis, threadfin shad Dorosoma petenense, gobies of the genus Tridentiger, and yellowfin goby Acanthogobins flavimanus, were selected for detailed analysis. Outflow conditions had a strong influence on the geographic distribution of most of the species, but distribution with respect to the 2 psu isohaline (X2) was not affected. The distribution patterns of delta smelt, longfin smelt, and striped bass were consistent with larvae moving from upstream freshwater spawning areas to down-stream estuarine rearing areas. There were no obvious relationships of outflow with annual abundance indices. Our results support the idea of using X2 as an organizing principle in understanding the ecology of larval fishes in the upper SFE. Additional years of sampling will likely lead to additional insights into the early life history of upper SFE fishes. ?? Copyright by the American Fisheries Society 2004.

American Fisheries Society Symposium↗

Edwards plateau: Analysis of land cover trends

The Land Cover Trends project studies the rates, causes, and consequences of contemporary (1973-2000) change in land use and land cover in the United States on an ecoregional basis. The Edwards Plateau ecoregion is the focus of this report. Landsat imagery from five dates during a nearly 30-year period are interpreted for randomly selected sample blocks. The resulting data provide the foundation for estimating change. Along with the image analysis, site visits to 90% of the sampled areas, geographical profiles, and socioeconomic data for the ecoregion are synthesized to assess regional driving forces and consequences of change. Complete project methodology can be found in Loveland et al [1].

Conference Paper↗

Spatial variability of sediment erosion processes using GIS analysis within watersheds in a historically mined region, Patagonia Mountains, Arizona

In this study, a geographic information system (GIS) is used to integrate and accurately map field studies, information from remotely sensed data, watershed models, and the dispersion of potentially toxic mine waste and tailings. The purpose of this study is to identify erosion rates and net sediment delivery of soil and mine waste/tailings to the drainage channel within several watershed regions to determine source areas of sediment delivery as a method of quantifying geo-environmental analysis of transport mechanisms in abandoned mine lands in arid climate conditions. Users of this study are the researchers interested in exploration of approaches to depicting historical activity in an area which has no baseline data records for environmental analysis of heavily mined terrain.

Arizona↗

Impacts of agricultural land use on biological integrity: A causal analysis

Agricultural land use has often been linked to nutrient enrichment, habitat degradation, hydrologic alteration, and loss of biotic integrity in streams. The U.S. Geological Survey's National Water Quality Assessment Program sampled 226 stream sites located in eight agriculture‐dominated study units across the United States to investigate the geographic variability and causes of agricultural impacts on stream biotic integrity. In this analysis we used structural equation modeling (SEM) to develop a national and set of regional causal models linking agricultural land use to measured instream conditions. We then examined the direct, indirect, and total effects of agriculture on biotic integrity as it acted through multiple water quality and habitat pathways. In our nation‐wide model, cropland affected benthic communities by both altering structural habitats and by imposing water quality‐related stresses. Region‐specific modeling demonstrated that geographic context altered the relative importance of causal pathways through which agricultural activities affected stream biotic integrity. Cropland had strong negative total effects on the invertebrate community in the national, Midwest, and Western models, but a very weak effect in the Eastern Coastal Plain model. In the Western Arid and Eastern Coastal Plain study regions, cropland impacts were transmitted primarily through dissolved water quality contaminants, but in the Midwestern region, they were transmitted primarily through particulate components of water quality. Habitat effects were important in the Western Arid model, but negligible in the Midwest and Eastern Coastal Plain models. The relative effects of riparian forested wetlands also varied regionally, having positive effects on biotic integrity in the Eastern Coastal Plain and Western Arid region models, but no statistically significant effect in the Midwest. These differences in response to cropland and riparian cover suggest that best management practices and planning for the mitigation of agricultural land use impacts on stream ecosystems should be regionally focused.

Ecological Applications↗

Upper Mississippi River system weighted wind fetch analysis (1989, 2000, 2010/2011)

Wind fetch is defined as the unobstructed distance that wind can travel over water in a constant direction. Fetches are limited by landforms surrounding the body of water. Fetch is an important characteristic of open water because longer fetches can result in larger wind-generated waves. The larger waves, in turn, can increase shoreline erosion and sediment resuspension (Rohweder and others 2012). Increases in sediment resuspension lead to increases in water turbidity, which in turn decreases light penetration and, therefore, create conditions less conducive to aquatic plant growth (Giblin and others 2010). A wind fetch model was developed by David Finlayson, U. S. Geological Survey, Pacific Science Center, while he was a Ph.D. student at the University of Washington (Finlayson 2005). This method calculates effective fetch using the recommended procedure of the Shore Protection Manual (USACE 1984). Scientists at the United States Geological Survey, Upper Midwest Environmental Sciences Center (UMESC) and the United States Army Corps of Engineers (USACE) further refined this model (Rohweder and others 2012) and structured it to operate using the most recent version of the ArcMap Geographic Information System platform (Esri, 2019). At the time the analysis was performed, the version of ArcMap used was 10.7.1. The model refined in 2012 was used for the analyses described in this report. Using this model, UMESC performed an analysis to model weighted wind fetch for the Upper Mississippi River System (UMRS) corresponding to three separate time periods of land cover spatial data acquisition (1989, 2000, and 2010/2011). The purpose of the analysis was to examine how fetch varies over time and space within the UMRS for potential management applications. For more detailed information on the wind fetch model, examine the USGS Open-File Report by Rohweder and others (2012).

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗

An interactive program for computer-aided map design, display, and query: EMAPKGS2

EMAPKGS2 is a user-friendly, PC-based electronic mapping tool for use in hydrogeologic exploration and appraisal. EMAPKGS2 allows the analyst to construct maps interactively from data stored in a relational database, perform point-oriented spatial queries such as locating all wells within a specified radius, perform geographic overlays, and export the data to other programs for further analysis. EMAPKGS2 runs under Microsoft?? Windows??? 3.1 and compatible operating systems. EMAPKGS2 is a public domain program available from the Kansas Geological Survey. EMAPKGS2 is the centerpiece of WHEAT, the Windows-based Hydrogeologic Exploration and Appraisal Toolkit, a suite of user-friendly Microsoft?? Windows??? programs for natural resource exploration and management. The principal goals in development of WHEAT have been ease of use, hardware independence, low cost, and end-user extensibility. WHEAT'S native data format is a Microsoft?? Access?? database. WHEAT stores a feature's geographic coordinates as attributes so they can be accessed easily by the user. The WHEAT programs are designed to be used in conjunction with other Microsoft?? Windows??? software to allow the natural resource scientist to perform work easily and effectively. WHEAT and EMAPKGS have been used at several of Kansas' Groundwater Management Districts and the Kansas Geological Survey on groundwater management operations, groundwater modeling projects, and geologic exploration projects. ?? 1997 Elsevier Science Ltd.

Computers & Geosciences↗

Development of hardwood seed zones for Tennessee using a geographic information system

For species that have no or limited information on genetic variation and adaptability to nonnative sites, there is a need for seed collection guidelines based on biological, climatological, and/or geographical criteria. Twenty-eight hardwood species are currently grown for reforestation purposes at the East Tennessee State Nursery. The majority of these species have had no genetic testing to define guidelines for seed collection location and can be distributed to sites that have a very different environment than that of seed origin(s). Poor survival and/or growth may result if seedlings are not adapted to environmental conditions at the planting location. To address this problem, 30 yr of Tennessee county precipitation and minimum temperature data were analyzed and grouped using a centroid hierarchical cluster analysis. The weather data and elevational data were entered into a Geographic Information System (GIS) and separately layered over Bailey's Ecoregions to develop a seed zone system for Tennessee. The seed zones can be used as a practical guideline for collecting seeds to ensure that the resulting seedlings will be adapted to planting environments.

Tennessee↗

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2021

Greater sage-grouse ( Centrocercus urophasianus ) are at the center of state and national land use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide current management and conservation plans aimed at benefitting sage-grouse populations. This analysis relied on previously published population trend modeling methodology from Coates and others (2021) and includes the addition of three analytical updates: (1) identification of population nadirs (lowest points within cycles) at the lek (breeding ground) and neighborhood cluster (group of leks) spatial scales, (2) truncation of prior distributions on rate of change in apparent abundance values to more realistic boundaries for leks with missing data, and (3) addition of 2 years of population lek count data (2020 and 2021) to the current dataset (1953–2021). Bayesian state-space models estimated 2.9 percent average annual decline in sage-grouse populations across their geographical range, which varied among subpopulations at the largest scale of analysis, termed climate clusters (2.2–4.6). Cumulative declines were 42.5, 65.6, and 80.1 percent range-wide across short (19 years), medium (35 years), and long (55 years) temporal periods, respectively. These results indicate that range-wide populations continued to decline during 2020 and 2021, although two climate clusters (eastern area and Bi-State area) have shown growth in population abundance in recent years, indicating they have surpassed a recent population abundance nadir.

Data Report↗

An open-source workflow for scaling burn severity metrics from drone to satellite to support post-fire watershed management

Wildfires are increasing in size and severity across much of the western United States, exposing vulnerable wildland-urban interfaces to post-fire hazards. The Mediterranean chaparral region of Northern California contains many high sloping watersheds prone to hazardous post-fire flood events and identifying watersheds at high risk of soil loss and debris flows is a priority for post-fire response and management. Uncrewed Aerial Systems (UAS; aka drones) offer post-fire management teams the ability to quickly mobilize and survey burned areas with very high-resolution imagery (∼1 cm), facilitating emergency management and post-fire hazard assessment. However, adoption of this technology by hazard response teams may be hindered by complicated workflows for UAS data acquisition, image processing and analysis. We present an open-source workflow using mature Geographic Information Systems (GIS) software and Python packages in a Jupyter Notebook environment that guides users through classification of true-color UAS imagery to generate high resolution burn severity maps which can then be scaled across larger watersheds using Sentinel-2 normalized burn ratio (NBR) images. Soil burn severity classifications using a weighted brightness (WB) image and Char Index (CI) generated from UAS imagery were validated with in-situ data and random stratified points, resulting in the CI having the highest overall accuracy of 87.5%. CI also displayed a marginally stronger relationship over the WB with the post-fire Sentinel-2 NBR, R 2 = 0.79 and R 2 = 0.78 respectively. Our methods offer the unique opportunity to standardize GIS workflows, promoting replication through transparency, while improving the user's understanding of scientific GIS functionality.

California↗

Genetic identification of African pangolins and their origin in illegal trade

To track the illegal pangolin trade from Africa to Asia, we analyzed 1800 DNA samples from 30 seizures of African pangolin scales in Hong Kong during the period 2012–2016. We concluded that all four African pangolin species were present in trade, and that the white-bellied pangolin ( Phataginus tricuspis ) appeared most frequently (88.5%) in our samples. All six previously described phylogeographic lineages originating from the entire distribution range of P. tricuspis were found in the seizures, and the western central African lineage alone accounted for 67.1% of the samples of this species. Confirmed by modelling data, high DNA haplotype richness was present in most of the pangolin scale seizures, including those contained in small air parcels and large-volume sea shipments. Results suggest that African pangolins were hunted across large areas of their natural range and then delivered to a small number of trade transit hubs. Our study illustrates the utility of genetic analysis for characterizing the illegal pangolin trade and identifying the geographic origin of poaching hotspots.

Global Ecology and Conservation↗

Hybridization rapidly reduces fitness of a native trout in the wild

Human-mediated hybridization is a leading cause of biodiversity loss worldwide. How hybridization affects fitness and what level of hybridization is permissible pose difficult conservation questions with little empirical information to guide policy and management decisions. This is particularly true for salmonids, where widespread introgression among non-native and native taxa has often created hybrid swarms over extensive geographical areas resulting in genomic extinction. Here, we used parentage analysis with multilocus microsatellite markers to measure how varying levels of genetic introgression with non-native rainbow trout (Oncorhynchus mykiss) affect reproductive success (number of offspring per adult) of native westslope cutthroat trout (Oncorhynchus clarkii lewisi) in the wild. Small amounts of hybridization markedly reduced fitness of male and female trout, with reproductive success sharply declining by approximately 50 per cent, with only 20 per cent admixture. Despite apparent fitness costs, our data suggest that hybridization may spread due to relatively high reproductive success of first-generation hybrids and high reproductive success of a few males with high levels of admixture. This outbreeding depression suggests that even low levels of admixture may have negative effects on fitness in the wild and that policies protecting hybridized populations may need reconsideration. ?? 2009 The Royal Society.

Biology Letters↗

Topographic, latitudinal and climatic distribution of Pinus coulteri : geographic range limits are not at the edge of the climate envelope

With changing climate, many species are projected to move poleward or to higher elevations to track suitable climates. The prediction that species will move poleward assumes that geographically marginal populations are at the edge of the species' climatic range. We studied Pinus coulteri from the center to the northern (poleward) edge of its range, and examined three scenarios regarding the relationship between the geographic and climatic margins of a species' range. We used herbarium and iNaturalist.org records to identify P. coulteri sites, generated a species distribution model based on temperature, precipitation, climatic water deficit, and actual evapotranspiration, and projected suitability under future climate scenarios. In fourteen populations from the central to northern portions of the range, we conducted field studies and recorded elevation, slope and aspect (to estimate solar insolation) to examine relationships between local and regional distributions. We found that northern populations of P. coulteri do not occupy the cold or wet edge of the species' climatic range; mid-latitude, high elevation populations occupy the cold margin. Aspect and insolation of P. coulteri populations changed significantly across latitudes and elevations. Unexpectedly, northern, low-elevation stands occupy north-facing aspects and receive low insolation, while central, high-elevation stands grow on more south-facing aspects that receive higher insolation. Modeled future climate suitability is projected to be highest in the central, high elevation portion of the species range, and in low-lying coastal regions under some scenarios, with declining suitability in northern areas under most future scenarios. For P. coulteri , the lack of high elevation habitat combined with a major dispersal barrier may limit northward movement in response to a warming climate. Our analyses demonstrate the importance of distinguishing geographically vs. climatically marginal populations, and the importance of quantitative analysis of the realized climate space to understand species range limits.

Ecography↗

National shoreline change—Summary statistics for vector shorelines from the early 1900s to the 2010s for Puerto Rico

The U.S. Geological Survey (USGS) maintains a database of historical shoreline positions for the United States coasts derived from historical sources, such as aerial photographs or topographic surveys, and contemporary sources, such as modern orthophotography, light detection and ranging (lidar) point clouds, and digital elevation models. These shorelines are compiled within a geographic information system and analyzed in the USGS Digital Shoreline Analysis System (version 5.1) software to calculate rates of change. Keeping a record of historical shoreline positions is an effective method to monitor change over time, enabling scientists and resource managers to identify areas that are historically most susceptible to erosion or accretion. The effort in this report represents an expansion of the USGS national-scale shoreline database to include Puerto Rico and the islands of the territory, Vieques and Culebra. The USGS, in cooperation with the Coastal Research and Planning Institute of Puerto Rico (part of the Graduate School of Planning at the University of Puerto Rico, Río Piedras Campus) has derived and compiled a database of historical shoreline positions for Puerto Rico from the early 1900s through 2018, with the goal of providing beneficial insight for coastal managers and communities vulnerable to coastal change.

Puerto Rico↗

Pesticides in the atmosphere; distribution, trends, and governing factors

A comprehensive review of existing literature on the occurrence and distribution of pesticides in the atmosphere of the United States and adjoining Canadian provinces showed that the atmosphere is an important part of the hydrologic cycle that acts to distribute and deposit pesticides in areas far removed from their application sites. A compilation of existing data shows that pesticides have been detected in the atmosphere throughout the nation. Most of the available information on pesticides in the atmosphere is from small-scale, short-term studies that seldom lasted more than one year. Only two national-scale, multi-year studies were done since the late 1960's that analyzed for a wide variety of pesticides in air that were in current use at the time. Another large-scale study was done during 1990-91, but was limited to the midwestern and northeastern United States and only analyzed for two classes of herbicides in wet deposition. Most of the pesticides analyzed for were detected in either air or rain, and represent about 25 percent of the total number of insecticides, herbicides, and fungicides in current use. The geographical distribution of studies, and the type of sampling and analysis were highly variable with most of the historical study efforts concentrated in the Great Lakes area and California. Air and rain were the main atmospheric matrices sampled, but pesticides were also detected in fog and snow. Reported pesticide concentrations in air and rain were frequently positively correlated to their regional agricultural use. Deviations from this relation could usually be explained by non-agricultural use of pesticides, sampling and analytical difficulties, and environmental persistence. High concentrations of locally used pesticides were found to occur seasonally, usually in conjunction with spring planting of row crops and warm temperatures, but high concentrations also occurred during winter months in those areas where dormant orchards were sprayed. The environmentally more persistent pesticides were detected in the atmosphere at low concen- trations throughout the year. Deposition of airborne pesticides can have significant effects on water quality, but neither the nature of nor the magnitude of these effects can be determined with certainty on the basis of the type of data currently available. The lack of consistent, long-term regional and national monitoring and study of pesticides in atmospheric matrices severely limits assessment capability.

Open-File Report↗

Phylogenetic classification of the frog pathogen Amphibiothecum (Dermosporidium) penneri based on small ribosomal subunit sequencing

We determined 1,600 base pairs of DNA sequence in the 18S small ribosomal subunit from two geographically distinct isolates of Dermosporidium penneri . Maximum likelihood and parsimony analysis of these sequences place D. penneri in the order Dermocystida of the class Mesomycetozoea. The 18S rRNA sequences from these two isolates only differ within a single region of 16 contiguous nucleotides. Based on the distant phylogenetic relationship of these organisms to Amphibiocystidium ranae and similarity to Sphaerothecum destruens we propose the organism be renamed Amphibiothecum penneri .

Journal of Wildlife Diseases↗

Geospatial decision support systems for societal decision making

While science provides reliable information to describe and understand the earth and its natural processes, it can contribute more. There are many important societal issues in which scientific information can play a critical role. Science can add greatly to policy and management decisions to minimize loss of life and property from natural and man-made disasters, to manage water, biological, energy, and mineral resources, and in general, to enhance and protect our quality of life. However, the link between science and decision-making is often complicated and imperfect. Technical language and methods surround scientific research and the dissemination of its results. Scientific investigations often are conducted under different conditions, with different spatial boundaries, and in different timeframes than those needed to support specific policy and societal decisions. Uncertainty is not uniformly reported in scientific investigations. If society does not know that data exist, what the data mean, where to use the data, or how to include uncertainty when a decision has to be made, then science gets left out -or misused- in a decision making process. This paper is about using Geospatial Decision Support Systems (GDSS) for quantitative policy analysis. Integrated natural -social science methods and tools in a Geographic Information System that respond to decision-making needs can be used to close the gap between science and society. The GDSS has been developed so that nonscientists can pose "what if" scenarios to evaluate hypothetical outcomes of policy and management choices. In this approach decision makers can evaluate the financial and geographic distribution of potential policy options and their societal implications. Actions, based on scientific information, can be taken to mitigate hazards, protect our air and water quality, preserve the planet's biodiversity, promote balanced land use planning, and judiciously exploit natural resources. Applications using the GDSS have demonstrated the benefits of utilizing science for policy decisions. Investment in science reduces decision-making uncertainty and reducing that uncertainty has economic value.

Boletin Geologico y Minero↗

Appendix D: Use of wave scenarios to assess potential submerged oil mat (SOM) formation along the coast of Florida and Alabama

During the Deepwater Horizon oil spill, oil in the surf zone mixed with sediment in the surf zone to form heavier-than-water sediment oil agglomerates of various size, ranging from small (cm-scale) pieces (surface residual balls, SRBs) to large mats (100-m scale, surface residue mats, SR mats). Once SR mats formed in the nearshore or in the intertidal zone, they may have become buried by sand moving onshore or alongshore. To assist in locating possible sites of buried oil, wave scenarios previously developed by the U.S. Geological Survey (USGS) were used to determine the depths at which surface oil had the potential to mix with suspended sediment. For sediment to mix with floating oil and form an agglomerate of sufficient density to sink to the seafloor, either the water must be very shallow (e.g., within the swash zone) or sediment must be suspended to the water surface in sufficient concentrations to create a denser-than-sea water agglomerate. The focus of this study is to analyze suspended sediment mixing with surface oil in depths beyond the swash zone, in order to define the seaward limit of mat formation. A theoretical investigation of sediment dynamics in the nearshore zone revealed that non-breaking waves do not suspend enough sediment to the surface to form sinking sand/oil agglomerates. For this study, it was assumed that the cross-shore distribution of potential agglomerate formation is associated with the primary breaker line, and the presence of plunging breakers, over the time frame of oiling. The potential locations of submerged oil mats (SOMs) are sites where (1) possible agglomerate formation occurred, where (2) sediment accreted post-oiling and buried the SOM, and where (3) the bathymetry has not subsequently eroded to re-expose any mat that may have formed at that site. To facilitate identification of these locations, the range of water level variation over the time frame of oiling was also prescribed, which combined with the wave-breaking depth analysis and pre-oiling bathymetry would identify the potential geographic locations of SOMs.

Operational Science Advisory Team Report↗

Integration of seafloor point data in usSEABED

Sediments of the beach, nearshore, and continental shelves record a complex interplay of processes including wave energy and direction , currents, beach erosion or accretion, bluff or cliff retreat, fluvial input, sediment longshore and cross-shelf transport processes, contaminant content and transport, sediment sources and sinks, and others. In turn, sediments and rocks modify wave patterns, affect recreation and tourism, and provide habitat for fish, epifauna, and infauna. Character of the surficial seafloor also influences navigation, commercial and recreational fishing and gathering of other food sources, communication, piplines, national defense, and provides geologic resources including sand and gravel aggregates, minerals, and real or potential energy sources. The beaches, nearshore, and continental margins fall under overlapping levels of managerial responsibility between Federal, State, regional, and local government agencies and consortia. In addition, universities and other academic institutions investigate these places for pure or applied scientific reasons. Mapping is usually the first step in understanding any issue and is often comprised of remotely gathered geophysical data such as bathymetry and backscatter imagery, and groundtruthing; that is, the collection of physical and virtual samples to tie the remotely gathered data to reality. The physical samples are described and (or) carefully analyzed for grain-size information -- which records both the site's physical conditions and geologic past -- and commonly, for constituent components such as mineral and rock types (to determine onland sources and in situ chemical processes), carbonate and organic content and microfossils (for biological and oceanographic influences), and structure such as layering and bioturbation (for physical influences). The samples may also be subjected to physical tests such as comp[action analyses, liquefaction or plasticity limits, ans other parameters important when considering construction of offshore structures. In recent years, virtual sampling of the seafloor has become popular, through the use of towed video or photographic equipment and the addition of camera to oceanographic equipment such as corers and tripods. Before about ten years ago, most maps were made by hand. Recently, with the advent of desktop GIS packages, map making and resource analysis can be done nearly "on-the-fly" if geographically located data exist. While the problems of projection, scale, and resolution of digitized paper maps are commonly known amongst GIS-users, access to the original underlying point data allows for maps to be regenerated for digital use using statistically proven methods, provides increasing data density by including multiple studies, as well as allows the point data to be used in other ways than just mapping. These point data may be available in raw or refined or in worded descriptions. Raw data such as granulometric analyses can be manipulated through the use of known equations or empirical relationships to provide information about other parameters of the sediment, such as mean grainsize, sorting, erodability, or rugosity. If refined data are presented such as gravel, sand, and mud percentages, the parameter noted earlier may be estimated. In the case of worded descriptions, values for geologic terms can be assigned, for example, "fine sand" equate to 0.2 mm sized particles, to provide numeric terms for GIS or modeling purposes.

Conference Paper↗