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Western Mineral and Environmental Resources Science Center--providing comprehensive earth science for complex societal issues

Minerals in the environment and products manufactured from mineral materials are all around us and we use and come into contact with them every day. They impact our way of life and the health of all that lives. Minerals are critical to the Nation's economy and knowing where future mineral resources will come from is important for sustaining the Nation's economy and national security. The U.S. Geological Survey (USGS) Mineral Resources Program (MRP) provides scientific information for objective resource assessments and unbiased research results on mineral resource potential, production and consumption statistics, as well as environmental consequences of mining. The MRP conducts this research to provide information needed for land planners and decisionmakers about where mineral commodities are known and suspected in the earth's crust and about the environmental consequences of extracting those commodities. As part of the MRP scientists of the Western Mineral and Environmental Resources Science Center (WMERSC or 'Center' herein) coordinate the development of national, geologic, geochemical, geophysical, and mineral-resource databases and the migration of existing databases to standard models and formats that are available to both internal and external users. The unique expertise developed by Center scientists over many decades in response to mineral-resource-related issues is now in great demand to support applications such as public health research and remediation of environmental hazards that result from mining and mining-related activities. Western Mineral and Environmental Resources Science Center Results of WMERSC research provide timely and unbiased analyses of minerals and inorganic materials to (1) improve stewardship of public lands and resources; (2) support national and international economic and security policies; (3) sustain prosperity and improve our quality of life; and (4) protect and improve public health, safety, and environmental quality. The MRP supports approximately 40 USGS research specialists who utilize cooperative agreements with universities, industry, and other governmental agencies to support their collaborative research and information exchange. Scientists of the WMERSC study how and where non-fuel mineral resources form and are concentrated in the earth's crust, where mineral resources might be found in the future, and how mineral materials interact with the environment to affect human and ecosystem health. Natural systems (ecosystems) are complex - our understanding of how ecosystems operate requires collecting and synthesizing large amounts of geologic, geochemical, biologic, hydrologic, and meteorological information. Scientists in the Center strive to understand the interplay of various processes and how they affect the structure, composition, and health of ecosystems. Such understanding, which is then summarized in publicly available reports, is used to address and solve a wide variety of issues that are important to society and the economy. WMERSC scientists have extensive national and international experience in these scientific specialties and capabilities - they have collaborated with many Federal, State, and local agencies; with various private sector organizations; as well as with foreign countries and organizations. Nearly every scientific and societal challenge requires a different combination of scientific skills and capabilities. With their breadth of scientific specialties and capabilities, the scientists of the WMERSC can provide scientifically sound approaches to a wide range of societal challenges and issues. The following sections describe examples of important issues that have been addressed by scientists in the Center, the methods employed, and the relevant conclusions. New directions are inevitable as societal needs change over time. Scientists of the WMERSC have a diverse set of skills and capabilities and are proficient in the collection and integration of

Circular

Investigation of submarine groundwater discharge along the tidal reach of the Caloosahatchee River, southwest Florida

The tidal reach of the Caloosahatchee River is an estuarine habitat that supports a diverse assemblage of biota including aquatic vegetation, shellfish, and finfish. The system has been highly modified by anthropogenic activity over the last 150 years (South Florida Water Management District (SFWMD), 2009). For example, the river was channelized and connected to Lake Okeechobee in 1881 (via canal C-43). Subsequently, three control structures (spillway and locks) were installed for flood protection (S-77 and S-78 in the 1930s) and for saltwater-intrusion prevention (S-79, W.P. Franklin Lock and Dam in 1966). The emplacement of these structures and their impact to natural water flow have been blamed for water-quality problems downstream within the estuary (Flaig and Capece, 1998; SFWMD, 2009). Doering and Chamberlain (1999) found that the operation of these control structures caused large and often rapid variations in salinity during various times of the year. Variable salinities could have deleterious impacts on the health of organisms in the Caloosahatchee River estuary. Flow restriction along the Caloosahatchee has also been linked to surface-water eutrophication problems (Doering and Chamberlain, 1999; SFWMD, 2009) and bottom-sediment contamination (Fernandez and others, 1999). Sources of nutrients (nitrogen and phosphorous) that cause eutrophication are primarily from residential sources and agriculture, though wastewater-treatment-plant discharges can also play a major role (SFWMD, 2009). The pathway for many of these nutrients is by land runoff and direct discharge from stormwater drains. An often overlooked source of nutrients and other chemical constituents is from submarine groundwater discharge (SGD). SGD can be either a diffuse or point source (for example, submarine springs) of nutrients and other chemical constituents to coastal waters (Valiela and others, 1990; Swarzenski and others, 2001; 2006; 2007; 2008). SGD can be composed of either fresh or marine water or various mixed ratios of fresh and marine water (Martin and others, 2007). In coastal areas where water-table elevations (hydraulic gradients) are steep, such as in Hood Canal, Washington (Swarzenski and others, 2007; Simonds and others, 2008), groundwater entering the coastal marine waters can be fresh (~1-4 parts per thousand, ppt). SGD in coastal locations that have low relief (low hydraulic gradients) such as the study area or other locations in Florida are typically driven by tidal pumping (Reich and others, 2002; 2008; Swarzenski and others, 2008), and water advecting into surface water is composed of recirculated marine water mixed with either fresh or brackish groundwaters. The importance of SGD in the delivery of nutrients and trace elements to coastal environments has been shown to be both beneficial and deleterious to ecosystem health (Valiela and others, 1990). The logical step in studying SGD is to map areas where SGD occurs. Methods such as continuous surface-water radon-222 ( 222 Rn) mapping and electrical resistivity (continuous resistivity profiles, CRP) have been developed and used to identify potential SGD sites (Dulaiova and others, 2005; Swarzenski and others 2004; 2006; 2007; 2008; Reich and others, 2008). CRP data record subsurface, bulk-resistivity measurements to depths up to 25 meters (m). The bulk resistivity can be representative of changes in porewater salinity or in lithology (Reich and others, 2008; Swarzenski and others, 2008). Radon-222 (half-life = 3.28 days) is a natural tracer of groundwater, because sediments and rocks, containing uranium-bearing materials such as limestone and phosphatic material, continually produce 222 Rn. Rn-222 (also referred to simply as radon) is an ideal tracer, because there is a constant source. Since radon is a gas, 222 Rn does not build up in the surface water but rather evades directly to the atmosphere (Burnett and Dulaiova, 2003; Burnett and others, 2003; Dulaiova and Burnett, 2006).

Florida

Physical, chemical, and mineralogical data from surficial deposits, groundwater levels, and water composition in the area of Franklin Lake playa and Ash Meadows, California and Nevada

This report presents data and describes the methods used to determine the physical attributes, as well as the chemical and mineralogical composition of surficial deposits; groundwater levels; and water composition in the area of Franklin Lake playa and Ash Meadows, California and Nevada. The results support studies that examine (1) the interaction between groundwater and the ground surface, and the transport of solutes through the unsaturated zone; (2) the potential for the accumulation of metals and metalloids in surface crusts; (3) emission of dust from metal-rich salt crust; and (4) the effects of metal-rich dusts on human and ecosystem health. The evaporation of shallow (<3 to 4 m) groundwater in saline, arid environments commonly results in the accumulation of salt in the subsurface and (or) the formation of salt crusts at the ground surface. Ground-surface characteristics such as hardness, electrical conductivity, and mineralogy depend on the types and forms of these salt crusts. In the study area, salt crusts range from hard and bedded to soft and loose (Reynolds and others, 2009). Depending on various factors such as the depth and composition of groundwater and sediment characteristics of the unsaturated zone, salt crusts may accumulate relatively high contents of trace elements. Soft, loose salt crusts are highly vulnerable to wind erosion and transport. These vulnerable crusts, which may contain high contents of potentially toxic trace elements, can travel as atmospheric dust and affect human and ecosystem health at local to regional scales.

Nevada;California;Arizona

Spatial and temporal variation in microcystins occurrence in wadeable streams in the southeastern USA

Despite historical observations of potential microcystin-producing cyanobacteria (including Leptolyngbya , Phormidium , Pseudoanabaena , and Anabaena species) in 74% of headwater streams in Alabama, Georgia, South Carolina, and North Carolina (USA) from 1993 to 2011, fluvial cyanotoxin occurrence has not been systematically assessed in the southeastern United States. To begin to address this data gap, a spatial reconnaissance of fluvial microcystin concentrations was conducted in 75 wadeable streams in the Piedmont region (southeastern USA) during June 2014. Microcystins were detected using enzyme-linked immunosorbent assay (limit = 0.10 µg/L) in 39% of the streams with mean, median, and maximum detected concentrations of 0.29 µg/L, 0.11 µg/L, and 3.2 µg/L, respectively. Significant (α = 0.05) correlations were observed between June 2014 microcystin concentrations and stream flow, total nitrogen to total phosphorus ratio, and water temperature; but each of these factors explained 38% or less of the variability in fluvial microcystins across the region. Temporal microcystin variability was assessed monthly through October 2014 in 5 of the streams where microcystins were observed in June and in 1 reference location; microcystins were repeatedly detected in all but the reference stream. Although microcystin concentrations in the present study did not exceed World Health Organization recreational guidance thresholds, their widespread occurrence demonstrates the need for further investigation of possible in-stream environmental health effects as well as potential impacts on downstream lakes and reservoirs. Environ Toxicol Chem 2016;9999:1–7. Published 2016 Wiley Periodicals Inc. on behalf of SETAC. This article is a US Government work and, as such, is in the public domain in the United States of America.

Alabama, Georgia, Maryland, North Carolina, South

An overview of bioaerosol load and health impacts associated with dust storms: A focus on the Middle East

Dust storms are an important environmental problem worldwide. The main sources of dust storms include the Sahara, the Middle East, and central and northeastern Asia. Dust storms originating from these regions can be dispersed across oceans and in some cases globally. They occur throughout the year and vary in frequency and intensity. The biological agents (e.g., fungi, bacteria and viruses) and the mineral and chemical compositions of dust may have adverse effects on human health and quality of life. Desert dusts may cause respiratory diseases, cardiovascular diseases, cardiopulmonary diseases, mental health issues, injuries and death from transport accidents caused by poor visibility. This paper presents dust storm human health research conducted in the Middle East in both indoor and outdoor environments. Results illustrate that particle concentration and bioaerosol types in the atmosphere are affected by climate change and meteorological factors. Recent data trends indicate that annual dust aerosol concentrations have increased worldwide. According to studies conducted in the Middle East, the incidence of respiratory and cardiovascular mortality and hospital visits have increased dramatically following dust storm exposures but very few have demonstrated a regional causation. National and international collaborative efforts are needed to advance our understanding of the global implications of dust storms and what may be the most effective means of mitigation.

Middle East

Human and ecosystem health in coastal systems

U.S. coastal economies and communities are facing an unprecedented and growing number of impacts to coastal ecosystems including beach and fishery closures, harmful algal blooms, loss of critical habitat, as well as shoreline damage. This paper synthesizes our present understanding of the dynamics of human and ecosystem health in coastal systems with a focus on the need to better understand nearshore physical process interactions with coastal pollutants and ecosystems (e.g. fate and transport, circulation, depositional environment, climate change). It is organized around two major topical areas and six subtopic areas: 1) Identifying and mitigating coastal pollutants, including fecal pollution, nutrients and harmful algal blooms, and microplastics; and 2) Resilient coastal ecosystems, which focuses on coastal fisheries, shellfish and natural and nature-based features (NNBF). Societal needs and the tools and technologies needed to address them are discussed for each subtopic. Recommendations for scientific research, observations, community engagement, and policies aim to help prioritize future research and investments. A better understanding of coastal physical processes and interactions with coastal pollutants and resilient ecosystems (e.g. fate and transport, circulation, depositional environment, climate change) is a critical need. Other research recommendations include the need to quantify potential threats to human and ecosystem health through accurate risk assessments and to quantify the resulting hazard risk reduction of natural and nature-based features; improve pollutant and ecosystem impacts forecasting by integrating frequent and new data points into existing and novel models; collect environmental data to calibrate and validate models to predict future impacts on coastal ecosystems and their evolution due to anthropogenic stressors (land-based pollution, overfishing, coastal development), climate change, and sea level rise; and develop lower cost and rapid response tools to help coastal managers better respond to pollutant and ecosystem threats.

Shore and Beach

Detection of coastal and submarine discharge on the Florida Gulf Coast with an airborne thermal-infrared mapping system

Along the Gulf Coast of Florida north of Tampa Bay lies a region characterized by an open marsh coast, low topographic gradient, water-bearing limestone, and scattered springs. The Floridan aquifer system is at or near land surface in this region, discharging water at a consistent 70-72&deg;F. The thermal contrast between ambient water and aquifer discharge during winter months can be distinguished using airborne thermal-infrared imagery. An airborne thermal-infrared mapping system was used to collect imagery along 126 miles of the Gulf Coast from Jefferson to Levy County, FL, in March 2009. The imagery depicts a large number of discharge locations and associated warm-water plumes in ponds, creeks, rivers, and nearshore waters. A thermal contrast of 6&deg;F or more was set as a conservative threshold for identifying sites, statistically significant at the 99% confidence interval. Almost 900 such coastal and submarine-discharge locations were detected, averaging seven to nine per mile along this section of coast. This represents approximately one hundred times the number of previously known discharge sites in the same area. Several known coastal springs in Taylor and Levy Counties were positively identified with the imagery and were used to estimate regional discharge equivalent to one 1st-order spring, discharging 100 cubic feet per second or more, for every two miles of coastline. The number of identified discharge sites is a conservative estimate and may represent two-thirds of existing features due to low groundwater levels at time of overflight. The role of aquifer discharge in coastal and estuarine health is indisputable; however, mapping and quantifying discharge in a complex karst environment can be an elusive goal. The results of this effort illustrate the effectiveness of the instrument and underscore the influence of coastal springs along this stretch of the Florida coast.

Florida

Virulence and biodegradation potential of dynamic microbial communities associated with decaying Cladophora in Great Lakes

Cladophora mats that accumulate and decompose along shorelines of the Great Lakes create potential threats to the health of humans and wildlife. The decaying algae create a low oxygen and redox potential environment favoring growth and persistence of anaerobic microbial populations, including Clostridium botulinum , the causal agent of botulism in humans, birds, and other wildlife. In addition to the diverse population of microbes, a dynamic chemical environment is generated, which involves production of numerous organic and inorganic substances, many of which are believed to be toxic to the sand and aquatic biotic communities. In this study, we used 16S-rDNA-based-amplicon sequencing and microfluidic-based quantitative PCR approaches to characterize the bacterial community structure and the abundances of human pathogens associated with Cladophora at different stages (up to 90 days) of algal decay in laboratory microcosms. Oxygen levels were largely depleted after a few hours of incubation. As Cladophora decayed, the algal microbial biodiversity decreased within 24 h, and the mat transitioned from an aerobic to anaerobic environment. There were increasing abundances of enteric and pathogenic bacteria during decomposition of Cladophora , including Acinetobacter , Enterobacter , Kluyvera , Cedecea , and others. In contrast, there were no or very few sequences (< 0.07%) assigned to such groups in fresh Cladophora samples. Principal coordinate analysis indicated that the bacterial community structure was dynamic and changed significantly with decay time. Knowledge of microbial communities and chemical composition of decaying algal mats is critical to our further understanding of the role that Cladophora plays in a beach ecosystem's structure and function, including the algal role in trophic interactions. Based on these findings, public and environmental health concerns should be considered when decaying Cladophora mats accumulate Great Lakes shorelines.

Great Lakes

Concentrations of lead and other inorganic constituents in samples of raw intake and treated drinking water from the municipal water filtration plant and residential tapwater in Chicago, Illinois, and East Chicago, Indiana, July–December 2017

The U.S. Geological Survey (USGS) Environmental Health Mission Area (EHMA) is providing comprehensive science on sources, movement, and transformation of contaminants and pathogens in watershed and aquifer drinking-water supplies and in built water and wastewater infrastructure (referred to as the USGS Water and Wastewater Infrastructure project) in the Greater Chicago Area and elsewhere in the United States, to fill data gaps identified by stakeholders and collaborators in drinking water and public health. EHMA Water and Wastewater Infrastructure research specifically provides insight into natural factors in the environment as well as those water-infrastructure components and processes (such as source-water corrosivity, treatment, plumbing, and so forth) that might influence human exposure to chemical and microbial contaminants at the residential tap. This infrastructure-exposure research role is fulfilled uniquely by the USGS and not by the U.S. Environmental Protection Agency (EPA), other agencies, or municipalities that focus on regulatory and policy activities and related compliance. The USGS approach to assessing the possible links between human health and chemical contaminant and pathogen exposure in drinking water is conducted in collaboration with public health experts and includes comprehensive characterization of the presence/absence and concentrations of more than 500 organic and 27 inorganic chemical constituents at the point of use (tap). Laboratory results for lead and other inorganic contaminants in Chicago, Illinois, and East Chicago, Indiana, residential tapwater are being released to ensure the timely release of quality-assured data to participants in the study. Concentrations of lead and other inorganic constituents were assessed in drinking water at the point of use (kitchen tap or filter) in 45 residential locations and in two locations within each of the two Chicago water purification plants and the two East Chicago water filtration plants during July–December 2017. Three methods were used for analyzing lead. The most sensitive method had a reporting limit of 0.020 micrograms per liter (µg/L). When using the most sensitive analytical method, lead was detected in 39 of 45 residential tapwater samples, with concentrations ranging from less than 0.020 µg/L to 5.31 µg/L (median of the detected values = 0.481 µg/L). Concentrations of lead also were detected in Lake Michigan intake water at all water purification/filtration plant facilities at concentrations ranging from 0.083 to 0.330 µg/L, but were not detected above the reporting limit in any samples of treated, pre-distribution drinking water at any of the water purification/filtration plant facilities. Because the USGS Water and Wastewater Infrastructure project in the Greater Chicago Area is focused on the potential human exposure to a broad suite of organic and inorganic contaminants in drinking water and is not focused specifically on lead, the sampling protocol did not include “first-draw,” stagnant sampling and samples were collected with point-of-use treatment in place, if present. Thus, the lead results reported herein are not appropriate for assessment of compliance with the EPA 1991 Lead and Copper Rule. Information resources for lead mitigation and water filtration are provided.

Illinois, Indiana

Data summary report: Unregulated contaminants monitoring project

The Drinking Water Protection Section of the Minnesota Department of Health conducted reconnaissance monitoring of selected public water systems in Minnesota. Funding was obtained primarily from the Environment and Natural Resources Trust Fund. Sampling was conducted in 2019 and 2021. Laboratory analysis of samples was conducted for a variety of different contaminants of emerging concern (CECs), including selected pharmaceuticals, pesticides, PFAS, wastewater indicators and other parameters chosen for the physical and land use setting surrounding the sampling points. Sampling site and parameter selection were designed with several goals, as follows: Characterize occurrence and distribution of selected CECs in settings where such chemicals are most likely to be present; Determine if any such occurrences represent a public health concern; Compare results from coupled source water and finished (i.e., treated) water samples at public water system sites where such sampling is feasible; Assess if results from geologically vulnerable (sensitive subject to rapid recharge) and geologically non-vulnerable settings differ significantly. 306 samples were collected as part of the study, from three networks of public water systems differentiated on the basis of source water type (i.e., surface water or groundwater) and land use environment (agricultural and wastewater influenced). This report provides a preliminary, qualitative evaluation of the results. Additionally, more rigorous research will be conducted on these water quality data to evaluate the below findings in more detail. High-level findings from this assessment include the following: Very few samples exceeded health-based guidance for CECs; o When this occurred, MDH staff conducted follow up sampling at the system and provided technical advice about managing the situation. Only a fraction of the CECs analyzed were detected; o Of the 522 different CECs analyzed in the water samples, 161 were detected in one or more samples; o Additionally, most detections were at low levels; Among the CEC classes included in the analytical work, pesticides and PFAS were generally detected at a greater frequency than other CECs; o See Executive Summary Figure 1. The ten most commonly detected individual compounds include: o Tribromomethane, or bromoform, (a disinfection by-product) (70% of sites where analyzed); o norgestrel (a pharmaceutical) (69% of sites where analyzed); o lithium (68% of sites where analyzed); o Metolachlor SA (52%), Deethylatrazine (49%), atrazine (45%), and deisopropylatrazine (31%) (pesticides); o PFBA (44%) and PFHxS (27%) (PFAS compounds); and o 5-methyl benzotriazole (29%) (a benzotriazole). Some CECs were detected more frequently in samples collected from surface waters than those collected from groundwater sources; CEC concentrations were generally higher in vulnerable settings compared to nonvulnerable settings; Whether CECs were detected more frequently in the source water or finished water varied by CEC class. For example, o Benzotriazoles and pharmaceuticals were more frequently detected in source water samples than finished water samples; and o Tribromomethane, or bromoform, a common disinfection by-product, was more frequently found in finished water samples than in source water samples. This work prompted a series of programmatic changes and innovations: A response framework was established for helping the program and public water systems manage detections of unregulated CECs in drinking water; Results were forwarded to the program within MDH responsible for developing healthbased guidance in order to nominate specific compounds found in drinking water but for which limited or no risk advice is available; MDH is seeking support from the Clean Water Council to support the establishment of permanent capacity within the Drinking Water Protection Section to continue sampling efforts of this type.

Minnesota

Detection of hepatitis E virus and other livestock-related pathogens in Iowa streams

Manure application is a source of pathogens to the environment. Through overland runoff and tile drainage, zoonotic pathogens can contaminate surface water and streambed sediment and could affect both wildlife and human health. This study examined the environmental occurrence of gene markers for livestock-related bacterial, protozoan, and viral pathogens and antibiotic resistance in surface waters within the South Fork Iowa River basin before and after periods of swine manure application on agricultural land. Increased concentrations of indicator bacteria after manure application exceeding Iowa's state bacteria water quality standards suggest that swine manure contributes to diminished water quality and may pose a risk to human health. Additionally, the occurrence of HEV and numerous bacterial pathogen genes for Escherichia coli , Enterococcus spp., Salmonella sp., and Staphylococcus aureus in both manure samples and in corresponding surface water following periods of manure application suggests a potential role for swine in the spreading of zoonotic pathogens to the surrounding environment. During this study, several zoonotic pathogens were detected including Shiga-toxin producing E. coli , Campylobacter jejuni , pathogenic enterococci, and S. aureus ; all of which can pose mild to serious health risks to swine, humans, and other wildlife. This research provides the foundational understanding required for future assessment of the risk to environmental health from livestock-related zoonotic pathogen exposures in this region. This information could also be important for maintaining swine herd biosecurity and protecting the health of wildlife near swine facilities.

Iowa

Environmental Escherichia coli : Ecology and public health implications - A review

Escherichia coli is classified as a rod-shaped, Gram-negative bacterium in the family Enterobacteriaceae . The bacterium mainly inhabits the lower intestinal tract of warm-blooded animals, including humans, and is often discharged into the environment through feces or wastewater effluent. The presence of E. coli in environmental waters has long been considered as an indicator of recent fecal pollution. However, numerous recent studies have reported that some specific strains of E. coli can survive for long periods of time, and potentially reproduce, in extra-intestinal environments. This indicates that E. coli can be integrated into indigenous microbial communities in the environment. This naturalization phenomenon calls into question the reliability of E. coli as a fecal indicator bacterium (FIB). Recently, many studies reported that E. coli populations in the environment are affected by ambient environmental conditions affecting their long-term survival. Large-scale studies of population genetics provide the diversity and complexity of E. coli strains in various environments, affected by multiple environmental factors. This review examines the current knowledge on the ecology of E. coli strains in various environments in regards to its role as a FIB and as a naturalized member of indigenous microbial communities. Special emphasis is given on the growth of pathogenic E. coli in the environment, and the population genetics of environmental members of the genus Escherichia . The impact of environmental E. coli on water quality and public health is also discussed.

Journal of Applied Microbiology

Beach science in the Great Lakes

Monitoring beach waters for human health has led to an increase and evolution of science in the Great Lakes, which includes microbiology, limnology, hydrology, meteorology, epidemiology, and metagenomics, among others. In recent years, concerns over the accuracy of water quality standards at protecting human health have led to a significant interest in understanding the risk associated with water contact in both freshwater and marine environments. Historically, surface waters have been monitored for fecal indicator bacteria (fecal coliforms, Escherichia coli , enterococci), but shortcomings of the analytical test (lengthy assay) have resulted in a re-focusing of scientific efforts to improve public health protection. Research has led to the discovery of widespread populations of fecal indicator bacteria present in natural habitats such as soils, beach sand, and stranded algae. Microbial source tracking has been used to identify the source of these bacteria and subsequently assess their impact on human health. As a result of many findings, attempts have been made to improve monitoring efficiency and efficacy with the use of empirical predictive models and molecular rapid tests. All along, beach managers have actively incorporated new findings into their monitoring programs. With the abundance of research conducted and information gained over the last 25 years, “Beach Science” has emerged, and the Great Lakes have been a focal point for much of the ground-breaking work. Here, we review the accumulated research on microbiological water quality of Great Lakes beaches and provide a historic context to the collaborative efforts that have advanced this emerging science.

Great Lakes

Assembling the right pieces: Developing an interdisciplinary team to study disease, decline, and recovery of a world-class Smallmouth Bass fishery

Managing and understanding fisheries dynamics are becoming more complex as new and seemingly more complicated environmental factors are identified. Often management requires resources beyond that of any one entity and calls for collaboration among partners with differing priorities and backgrounds to account for the complexity of factors influencing fisheries. We present a collaborative case study from the Susquehanna River basin, Pennsylvania, where Smallmouth Bass Micropterus dolomieu have faced population declines, mortality events, and notable signs of disease in recent years. Collaboration was required to study many facets of the fishery and the environment simultaneously to better understand risk factors and underlying relationships influencing Smallmouth Bass health. The outcomes from this interdisciplinary collaboration allowed for identification of contributing risk factors, led to the development of products and analytical techniques that were mutually beneficial to all partners involved, and provided knowledge that was integrated into fish health and fisheries management.

Maryland, New York, Pennsylvania

Bait trapping of waterfowl increases the environmental contamination of avian influenza virus (AIV)

Highly pathogenic avian influenza virus (HPAIV) H5Nx clade 2.3.4.4b has circulated in North America since late 2021, resulting in higher rates of morbidity and mortality in wild birds than observed in this region before. The objective of this study was to determine whether baiting, which is widely conducted in Canada and the United States as part of waterfowl management practices (e.g., duck banding), influences the occurrence of avian influenza virus (AIV) in wetlands. We used a quasi-experimental design, collecting superficial sediment samples ( n = 336) and fecal samples ( n = 242) from paired baited (treatment) and non-baited (control) sites at 2 wetlands in Saskatchewan, Canada, between August and September 2022. We visited sampling sites 3 times during the sampling period: prior to the commencement of baiting activities ( t0 ), approximately 14 days after t0 ( t1 ), and 24 days after t0 ( t2 ). We screened samples for AIV using real-time reverse-transcriptase polymerase chain reaction (rRT-PCR) targeting the matrix gene and subjected the PCR-positive samples to next-generation sequencing. We used a mixed-effects logistic regression model to estimate the effect of baiting on the odds of AIV positivity in sediment samples, while controlling for clustering by wetland. At control sites, we did not detect evidence for a difference in the odds of AIV detection in sediment at t1 or t2 versus t0 ; however, at baited sites, the odds of AIV detection at t1 were 5.43 (95% CI = 1.99, 14.79) times the odds at t0 and at t2 the odds of AIV detection were 8.73 (95% CI = 3.29, 23.18) times the odds at t0 . We detected HPAIV clade 2.3.4.4b H5N1 in sediment at 1 treatment site following baiting. There was also a trend towards increased fecal AIV positivity and increased fecal and sediment AIV diversity in baited versus non-baited sites; however, there was insufficient power to determine if these findings were statistically significant. Overall, our results indicate that baiting is associated with localized increases in AIV environmental contamination, with baiting potentially creating concentrated areas of AIV accumulation. As such, wetland baiting activities may pose a risk to wildlife population health through the propagation of AIV in wetlands and the waterfowl using those environments and efforts to replace, refine, or reduce this activity may be warranted depending on local ecosystem contexts and cost-benefit analyses.

Saskatchewan

Atmospheric movement of microorganisms in clouds of desert dust and implications for human health

Billions of tons of desert dust move through the atmosphere each year. The primary source regions, which include the Sahara and Sahel regions of North Africa and the Gobi and Takla Makan regions of Asia, are capable of dispersing significant quantities of desert dust across the traditionally viewed oceanic barriers. While a considerable amount of research by scientists has addressed atmospheric pathways and aerosol chemistry, very few studies to determine the numbers and types of microorganisms transported within these desert dust clouds and the roles that they may play in human health have been conducted. This review is a summary of the current state of knowledge of desert dust microbiology and the health impact that desert dust and its microbial constituents may have in downwind environments both close to and far from their sources.

Clinical Microbiology Reviews

Designs for cyanobacterial harmful algal bloom monitoring in the Sacramento–San Joaquin Delta, California

Cyanobacterial harmful algal blooms (CHABs) are a growing concern in freshwater environments. These blooms can lead to degraded water quality, ecosystem disruptions, and public health threats due to the production of potent cyanotoxins. The Sacramento–San Joaquin Delta (California, USA; the Delta) has experienced CHABs since 1999, including CHABs that produce cyanotoxins at concentrations exceeding recreational advisory threshold levels. In response to the CHAB monitoring needs in the Delta, in 2024 a CHAB monitoring strategy for the Sacramento–San Joaquin Delta was released. The CHAB monitoring strategy recommended implementing a comprehensive monitoring program aligned with regional priorities, and this report responds directly to that recommendation. Building on the CHAB monitoring strategy, it describes three example monitoring designs that draw from past studies to address present needs. To develop designs, the report outlines key components and considerations for implementing a CHAB monitoring program in the Delta. It provides: background on monitoring and modeling approaches, an overview of current monitoring programs in the region, guidance for selecting monitoring locations, indicators, and sampling frequencies, and example designs to guide program planning and budgeting. The overarching goal of the report is to help agencies and stakeholders move from high-level recommendations to practical, actionable designs that are tailored to the Delta’s physical, anthropogenic, and ecological landscape.

ESS Open Archive