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Phylogenetic and ecological characteristics associated with thiaminase activity in Laurentian Great Lakes fishes

Thiamine deficiency complex (TDC) causes mortality and sublethal effects in Great Lakes salmonines and results from low concentrations of egg thiamine that are thought to be caused by thiaminolytic enzymes (i.e., thiaminase) present in the diet. This complex has the potential to undermine efforts to restore lake trout Salvelinus namaycush and severely restrict salmonid production in the Great Lakes. Although thiaminase has been found in a variety of Great Lakes fishes, the ultimate source of thiaminase in Great Lakes fishes is currently unknown. We used logistic regression analysis to investigate relationships between thiaminase activity and phylogenetic or ecological characteristics of 39 Great Lakes fish species. The taxonomically more ancestral species were more likely to show thiaminase activity than the more derived species. Species that feed at lower trophic levels and occupy benthic habitats also appeared to be more likely to show thiaminase activity; these variables were correlated with taxonomy, which was the most important predictor of thiaminase activity. Further analyses of the relationship between quantitative measures of thiaminase activity and ecological characteristics of Great Lakes fish species would provide greater insight into potential sources and pathways of thiaminase in Great Lakes food webs. ?? Copyright by the American Fisheries Society 2008.

Transactions of the American Fisheries Society

The economics of decarbonizing Costa Rica's agriculture, forestry and other land uses sectors

In 2018, Costa Rica demonstrated its commitment to the Paris Agreement and published its Decarbonization Plan for achieving zero net emissions by the year 2050. We evaluate the impacts of the country's strategy for decarbonizing its Agriculture, Forestry and Other Land Uses (AFOLU) sectors by coupling the Integrated Economic-Environmental Modeling framework with high-resolution spatial land use-land cover change and ecosystem services modeling (IEEM+ESM). Our results show that decarbonization of AFOLU would simultaneously enhance carbon storage, water purification, water regulation and erosion mitigation ecosystem services. Moreover, the positive cumulative wealth impact of decarbonization would be approximately US$7.27 billion by 2050 while lifting an additional 3810 individuals out of poverty. From a public investment perspective, decarbonization would have a fiscally neutral impact with the economic benefits sufficient in magnitude to off-set policy implementation costs and generate economic returns of over US$852 million when changes in natural capital stocks and environmental quality are considered. This application to Costa Rica is the first integrated economy-wide analysis of a growing number of decarbonization plans globally. The IEEM+ESM approach provides an integrated framework for analyzing decarbonization plans and can be used to refine AFOLU mitigation strategies to capitalize on synergies and minimize negative trade-offs across the three dimensions of wealth and sustainable economic development, namely economy, society and the environment.

Ecological Economics

Shorebird stopover habitat decisions in a changing landscape

To examine how habitat use by sandpipers ( Calidris spp.; Baird's sandpipers, dunlin, least sandpipers, pectoral sandpipers, semipalmated sandpipers, stilt sandpipers, and white-rumped sandpipers) varies across a broad suite of environmental conditions, we conducted surveys at wetlands throughout the spring migratory period in 2013 and 2014 in 2 important stopover regions: the Rainwater Basin (RWB) in Nebraska, USA, and the Prairie Pothole Region (PPR) in South Dakota, USA. Because providing adequate energetic resources for migratory birds is a high priority for wetland management, we also measured invertebrate abundance at managed wetlands in the RWB to determine how food abundance influences the occupancy and abundance of sandpipers on wetlands throughout the migratory period. To quantify habitat use, we surveyed wetlands every 7–10 days in both regions and visually estimated wetland attributes. Our results indicate that invertebrate abundance predicted occupancy, but not abundance, of sandpipers at wetlands in the RWB. The wetland vegetation characteristics that predict sandpiper occupancy are similar in both regions, but wetlands in the PPR support a higher abundance of sandpipers than wetlands in the RWB. Our results suggest that sandpipers make stopover decisions that balance local and regional wetland conditions. Managers should maintain the cues (i.e., mudflat) and ecological conditions beyond invertebrate abundance that predict sandpiper habitat use to successfully provide resources for sandpipers during migratory stopover if that is a goal of wetland management. © 2017 The Wildlife Society.

Nebraska, South Dakota

Feeding ecology of native and nonnative salmonids during the expansion of a nonnative apex predator in Yellowstone Lake, Yellowstone National Park

The illegal introduction of Lake Trout Salvelinus namaycush into Yellowstone Lake, Yellowstone National Park, preceded the collapse of the native population of Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri , producing a four-level trophic cascade. The Yellowstone Cutthroat Trout population’s collapse and the coinciding increase in Lake Trout abundance provided a rare opportunity to evaluate the feeding ecology of a native prey species and a nonnative piscivore species after the restructuring of a large lentic ecosystem. We assessed diets, stable isotope signatures, and depth-related CPUE patterns for Yellowstone Cutthroat Trout and Lake Trout during 2011–2013 to evaluate trophic overlap. To evaluate diet shifts related to density, we also compared 2011–2013 diets to those from studies conducted during previous periods with contrasting Yellowstone Cutthroat Trout and Lake Trout CPUEs. We illustrate the complex interactions between predator and prey in a simple assemblage and demonstrate how a nonnative apex predator can alter competitive interactions. The diets of Yellowstone Cutthroat Trout were dominated by zooplankton during a period when the Yellowstone Cutthroat Trout CPUE was high and were dominated by amphipods when the CPUE was reduced. Lake Trout shifted from a diet that was dominated by Yellowstone Cutthroat Trout during the early stages of the invasion to a diet that was dominated by amphipods after Lake Trout abundance had increased and after Yellowstone Cutthroat Trout prey had declined. The shifts in Yellowstone Cutthroat Trout and Lake Trout diets resulted in increased trophic similarity of these species through time due to their shared reliance on benthic amphipods. Yellowstone Cutthroat Trout not only face the threat posed by Lake Trout predation but also face the potential threat of competition with Lake Trout if amphipods are limiting. Our results demonstrate the importance of studying the long-term feeding ecology of fishes in invaded ecosystems.

Wyoming

It's time for bold new approaches to link delta science and policymaking

California’s Sacramento–San Joaquin Delta is widely recognized as a highly damaged ecosystem. The Delta is also emblematic of a growing sense worldwide that society needs to do a better job of using scientific knowledge to guide conservation and resource management policies. Fortunately, we now have an unprecedented opportunity to get it right in building structures that support effective science–policy linkages in the Delta. By adopting bold steps to implement a “one Delta, one science” approach for a new Delta Science Plan, California can become a leading example of how to tackle the global problem of rapid ecological change and biodiversity loss. In this essay, we first describe the current paradox—continued environmental declines despite considerable investments in science and policy actions—and the high stakes of gambling with failure. Next, we explore why it is so hard to use scientific knowledge to design and implement policies that meet society’s sustainability goals. We then outline promising ways to overcome these obstacles, drawing on recent experiences. We conclude with thoughts on how to leverage this experience to develop a bold new approach to Delta science.

California

Evaluation of key scientific issues in the report, “State of the mountain lion—A call to end trophy hunting of America’s lion”

In their recently published report, State of the Mountain Lion: A Call to End Trophy Hunting of America’s Lion , the Humane Society of the United States suggested that mountain lion ( Puma concolor ) hunting should be abolished in the United States. The report claims this recommendation is based on scientific arguments that demonstrate the overharvest of mountain lions throughout much of their current range in the United States. We reviewed the science presented by the Humane Society to support their call for the cessation of mountain lion hunting. Rather than provide a rigorous assessment of the peer-reviewed scientific literature and available data on mountain lion ecology, population dynamics and management, the report uses a fundamentally unscientific approach that starts with an a priori assumption that hunting is detrimental to the long-term persistence of mountain lion populations, then attempts to use scientific arguments to support this value-based position. The report frequently ignores or selectively interprets relevant peer-reviewed literature, weakening the scientific credibility of the report. The report relies on imprecise and inadequate demographic measures, questionable data, and simplistic methodologies to derive dubious estimates of potential lion densities; it compares these estimates to various measures produced by State agencies (which themselves vary in reliability as estimates of abundance) to purportedly illustrate the detrimental effects of hunting. The approach used in the report to support the predetermined supposition that mountain lion populations are over-hunted fails to serve as a scientifically defensible foundation for management recommendations range-wide or at the State level.

Open-File Report

Food habits of Atlantic sturgeon off the central New Jersey coast

Limited information exists on the marine diet of the Atlantic sturgeon Acipenser oxyrinchus oxyrinchus . We examined the food habits of 275 Atlantic sturgeon (total length, 106–203 cm) caught in the commercial fishery off the coast of New Jersey. Stomachs were provided by fishermen. Significantly more stomachs were empty in the spring than in the fall. Sand and organic debris were a major component in the stomachs (26.3–75.4% by weight). Polycheates were the primary prey group consumed, although the isopod Politolana concharum was the most important individual prey eaten. Mollusks and fish contributed little to the diet. Some prey taxa (i.e., polychaetes, isopods, amphipods) exhibited seasonal variation in importance in the diet of Atlantic sturgeon. Identification of the offshore diet of Atlantic sturgeon is an important step in developing a better understanding of the life history requirements and marine ecology of this species.

New Jersey

The growth-temperature relation of juvenile lake whitefish

The lake whitefish Coregonus clupeaformis supports major commercial fisheries in Lakes Superior, Huron, and Michigan, where it is managed on a sustained-yield basis; it also supports a recreational hook-and-line fishery in some Great Lakes embayments and nearshore areas. To better understand habitat use by juvenile lake whitefish in the Great Lakes, we acclimated groups of test fish in the laboratory to 5, 10, 15, 18, 21, and 24°C and fed them to excess twice daily for 55 d. The test fish increased in length and weight at all of the test temperatures and at the end of the study were heaviest and longest at 18.1°C. A curve fitted to the specific growth rate data indicated that the optimum temperature for growth was 18.5°C and, thus, that the fundamental thermal niche for juvenile lake whitefish is 15.5–19.5°C. Our results support the limited, published information on thermal ecology of wild, free-ranging juvenile lake whitefish in the Great Lakes.

Transactions of the American Fisheries Society

Effect of outflow on spring and summertime distribution and abundance of larval and juvenile fishes in the upper San Francisco Estuary

We analyzed data on spring and summertime larval and juvenile fish distribution and abundance in the upper San Francisco Estuary (SFE), California between 1995 and 2001. The upper SFE includes the tidal freshwater areas of the Sacramento-San Joaquin Delta downstream to the euryhaline environment of San Pablo Bay. The sampling period included years with a variety of outflow conditions. Fifty taxa were collected using a larval tow net. Two common native species, delta smelt Hypomesus transpacifucus and longfin smelt Spirinchus thaleichthys, and four common alien taxa, striped bass Morone saxatilis, threadfin shad Dorosoma petenense, gobies of the genus Tridentiger, and yellowfin goby Acanthogobins flavimanus, were selected for detailed analysis. Outflow conditions had a strong influence on the geographic distribution of most of the species, but distribution with respect to the 2 psu isohaline (X2) was not affected. The distribution patterns of delta smelt, longfin smelt, and striped bass were consistent with larvae moving from upstream freshwater spawning areas to down-stream estuarine rearing areas. There were no obvious relationships of outflow with annual abundance indices. Our results support the idea of using X2 as an organizing principle in understanding the ecology of larval fishes in the upper SFE. Additional years of sampling will likely lead to additional insights into the early life history of upper SFE fishes. ?? Copyright by the American Fisheries Society 2004.

American Fisheries Society Symposium

Development of a bioenergetics model for the threespine stickleback Gasterosteus aculeatus

The Threespine Stickleback Gasterosteus aculeatus is widely distributed across northern hemisphere ecosystems, has ecological influence as an abundant planktivore, and is commonly used as a model organism, but the species lacks a comprehensive model to describe bioenergetic performance in response to varying environmental or ecological conditions. This study parameterized a bioenergetics model for the Threespine Stickleback using laboratory measurements to determine mass- and temperature-dependent functions for maximum consumption and routine respiration costs. Maximum consumption experiments were conducted across a range of temperatures from 7.5°C to 23.0°C and a range of fish weights from 0.5 to 4.5 g. Respiration experiments were conducted across a range of temperatures from 8°C to 28°C. Model sensitivity was consistent with other comparable models in that the mass-dependent parameters for maximum consumption were the most sensitive. Growth estimates based on the Threespine Stickleback bioenergetics model suggested that 22°C is the optimal temperature for growth when food is not limiting. The bioenergetics model performed well when used to predict independent, paired measures of consumption and growth observed from a separate wild population of Threespine Sticklebacks. Predicted values for consumption and growth (expressed as percent body weight per day) only deviated from observed values by 2.0%. Our model should provide insight into the physiological performance of this species across a range of environmental conditions and be useful for quantifying the trophic impact of this species in food webs containing other ecologically or economically important species.

Transactions of the American Fisheries Society

Three distinct clades of cultured heterocystous cyanobacteria constitute the dominant N2-fixing members of biological soil crusts of the Colorado Plateau, USA

The identity of the numerically dominant N2-fixing bacteria in biological soil crusts of the Colorado Plateau region and two outlying areas was determined using multiple approaches, to link the environmental diversity of nifH gene sequences to cultured bacterial isolates from the regions. Of the nifH sequence-types detected in soil crusts of the Colorado Plateau, 89% (421/473) were most closely related to nifH signature sequences from cyanobacteria of the order Nostocales. N2-fixing cyanobacterial strains were cultured from crusts and their morphotypes, 16S rRNA gene and nifH gene sequences were characterized. The numerically dominant diazotrophs in the Colorado Plateau crusts fell within three clades of heterocystous cyanobacteria. Two clades are well-represented by phylogenetically and morphologically coherent strains, corresponding to the descriptions of Nostoc commune and Scytonema hyalinum, which are widely recognized as important N2-fixing components of soil crusts. A third, previously-overlooked clade was represented by a phylogenetically coherent but morphologically diverse group of strains that encompass the morphogenera Tolypothrix and Spirirestis. Many of the strains in each of these groups contained at least two nifH copies that represent different clusters in the nifH environmental survey. ?? 2007 Federation of European Microbiological Societies.

FEMS Microbiology Ecology

The horse and deer flies (Diptera: Tabanidae) of Rhode Island

The Tabanidae of Rhode Island were surveyed using Rhode Island canopy traps placed at 20 locations in the state during the summers of 1999 and 2000. In total, 5,120 flies were collected, which included 55 species in the genera Chrysops, Hybomitra, Tabanus, Merycomyia, and Stonemyia. Distributional and ecological information is provided for each species in Rhode Island.

Annals of the Entomological Society of America

American black bear denning behavior: Observations and applications using remote photography

Researchers examining American black bear ( Ursus americanus ) denning behavior have relied primarily on den-site visitation and radiotelemetry to gather data. Repeated den-site visits are time-intensive and may disturb denning bears, possibly causing den abandonment, whereas radiotelemetry is sufficient only to provide gross data on den emergence. We used remote cameras to examine black bear denning behavior in the Allegheny Mountains of western Virginia during March-May 2003. We deployed cameras at 10 den sites and used 137 pictures of black bears. Adult female black bears exhibited greater extra-den activity than we expected prior to final den emergence, which occurred between April 12 and May 6, 2003. Our technique provided more accurate den-emergence estimation than previously published methodologies. Additionally, we observed seldom-documented behaviors associated with den exits and estimated cub age at den emergence. Remote cameras can provide unique insights into denning ecology, and we describe their potential application to reproductive, survival, and behavioral research.

Virginia

Maintaining the competitiveness of the American Fisheries Society journals: An assessment based on influence and cost-effectiveness

Recent changes in the landscape of scientific publishing prompted the Publications Overview Committee of the American Fisheries Society (AFS) to review the Society's portfolio of scientific journals. We evaluated journals based on metrics in two categories: (1) citation-based measures of the influence of a journal on the scientific literature, and (2) measures of the cost-effectiveness of a journal (citation rate adjusted for subscription cost). Over the long-term, we found that ecology journals had far stronger citation-based influence than fisheries and aquatic sciences journals, and that journals publishing primarily basic research had stronger influence than journals publishing applied research (including four AFS journals and Fisheries magazine). In evaluating the current status of fisheries and aquatic sciences journals, we found that metrics of influence and cost-effectiveness provided considerably different portrayals of journals relative to their peers. In terms of citation-based influence, we found that the AFS journal Transactions of the American Fisheries Society (TAFS) and Fisheries magazine were competitive with highly regarded peer fisheries journals, but that North American Journal of Aquaculture (NAJA) and Journal of Aquatic Animal Health (JAAH) were less influential than their peers. The citation-based influence of North American Journal of Fisheries Management (NAJFM) was intermediate between TAFS/Fisheries and NAJA/JAAH . For journals like NAJFM and NAJA , we expect that much of the scientific influence on policy and management is not captured by citations in the primary literature, and alternative methods of evaluation may be needed. All of the AFS journals ranked highly with regard to cost-effectiveness because their subscription costs are low, and these rankings are in accordance with membership needs and the strategic mission of AFS to provide broad and timely dissemination of scientific information. We conclude by suggesting ways to increase the influence of AFS journals without compromising their accessibility and affordability, and offer advice about methods and frequency for future journal evaluations.

Fisheries

Moving beyond too little, too late: managing emerging infectious diseases in wild populations requires international policy and partnerships

Emerging infectious diseases (EIDs) are on the rise due to multiple factors, including human facilitated movement of pathogens, broad-scale landscape changes, and perturbations to ecological systems (Jones et al. 2008; Fisher et al. 2012). Epidemics in wildlife are problematic because they can lead to pathogen spillover to new host organisms, erode biodiversity and threaten ecosystems that sustain human societies (Fisher et al. 2012; Kilpatrick 2011). There have been recent calls for large-scale research approaches to combat threats EIDs pose to wildlife (Sleeman 2013). While it is true that developing new analytical models, diagnostic assays and molecular tools will significantly avance outr abilities to respond to disease threats, we also propose that addressing difficult problems in EIDs will require considerable shofts in international health policy and infrastructure. While there are currently international organizations responsbile for rapidly initiating and coordinating preventative measures to control infectious diseases in human, livestock, and arable systems, there are few comparable instiutions that have the authority to implement transnational responses to EIDs in wildlife. This absence of well-developed infastructure hampers the rapid responses necessary to mitigate international spread of EIDs.

EcoHealth

Large reservoirs: Chapter 17

Large impoundments, defined as those with surface area of 200 ha or greater, are relatively new aquatic ecosystems in the global landscape. They represent important economic and environmental resources that provide benefits such as flood control, hydropower generation, navigation, water supply, commercial and recreational fisheries, and various other recreational and esthetic values. Construction of large impoundments was initially driven by economic needs, and ecological consequences received little consideration. However, in recent decades environmental issues have come to the forefront. In the closing decades of the 20th century societal values began to shift, especially in the developed world. Society is no longer willing to accept environmental damage as an inevitable consequence of human development, and it is now recognized that continued environmental degradation is unsustainable. Consequently, construction of large reservoirs has virtually stopped in North America. Nevertheless, in other parts of the world construction of large reservoirs continues. The emergence of systematic reservoir management in the early 20th century was guided by concepts developed for natural lakes (Miranda 1996). However, we now recognize that reservoirs are different and that reservoirs are not independent aquatic systems inasmuch as they are connected to upstream rivers and streams, the downstream river, other reservoirs in the basin, and the watershed. Reservoir systems exhibit longitudinal patterns both within and among reservoirs. Reservoirs are typically arranged sequentially as elements of an interacting network, filter water collected throughout their watersheds, and form a mosaic of predictable patterns. Traditional approaches to fisheries management such as stocking, regulating harvest, and in-lake habitat management do not always produce desired effects in reservoirs. As a result, managers may expend resources with little benefit to either fish or fishing. Some locally expressed effects, such as turbidity and water quality, zooplankton density and size composition, or fish growth rates and assemblage composition, are the upshot of large-scale factors operating outside reservoirs and not under the direct control of reservoir managers. Realistically, abiotic and biotic conditions in reservoirs are shaped by factors working inside and outside reservoirs, with the relative importance of external factors differing among reservoirs. With this perspective, large reservoirs are viewed from a habitat standpoint within the framework of a conceptual model in which individual reservoir characteristics are influenced by both local- and landscape-scale factors (Figure 17.1). In the sections that follow, how each element of this hierarchical model influences habitat and fish assemblages in reservoirs is considered. Important in-reservoir habitat issues and reservoirs as part of larger systems, where reservoir management requires looking for real solutions outside individual reservoirs are described.

Book chapter

Integrated conceptual ecological model and habitat indices for the southwest Florida coastal wetlands

The coastal wetlands of southwest Florida that extend from Charlotte Harbor south to Cape Sable, contain more than 60,000 ha of mangroves and 22,177 ha of salt marsh. These coastal wetlands form a transition zone between the freshwater and marine environments of the South Florida Coastal Marine Ecosystem (SFCME). The coastal wetlands provide diverse ecosystem services that are valued by society and thus are important to the economy of the state. Species from throughout the region spend part of their life cycle in the coastal wetlands, including many marine and coastal-dependent species, making this zone critical to the ecosystem health of the Everglades and the SFCME. However, the coastal wetlands are increasingly vulnerable due to rising sea level, changes in storm intensity and frequency, land use, and water management practices. They are at the boundary of the region covered by the Comprehensive Everglades Restoration Plan (CERP), and thus are impacted by both CERP and marine resource management decisions. An integrated conceptual ecological model (ICEM) for the southwest coastal wetlands of Florida was developed that illustrates the linkages between drivers, pressures, ecological process, and ecosystem services. Five ecological indicators are presented: (1) mangrove community structure and spatial extent; (2) waterbirds; (3) prey-base fish and macroinvertebrates; (4) crocodilians; and (5) periphyton. Most of these indicators are already used in other areas of south Florida and the SFCME, and therefore will allow metrics from the coastal wetlands to be used in system-wide assessments that incorporate the entire Greater Everglades Ecosystem.

Ecological Indicators