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At least 289 records · Page 16Linked to original sources

USGS2018

Carbonate system parameters of an algal-dominated reef along west Maui

Constraining coral reef metabolism and carbon chemistry dynamics are fundamental for understanding and predicting reef vulnerability to rising coastal CO 2 concentrations and decreasing seawater pH. However, few studies exist along reefs occupying densely inhabited shorelines with known input from land-based sources of pollution. The shallow coral reefs off Kahekili, West Maui, are exposed to nutrient-enriched, low-pH submarine groundwater discharge (SGD) and are particularly vulnerable to the compounding stressors from land-based sources of pollution and lower seawater pH. To constrain the carbonate chemistry system, nutrients and carbonate chemistry were measured along the Kahekili reef flat every 4 h over a 6-d sampling period in March 2016. Abiotic process – primarily SGD fluxes – controlled the carbonate chemistry adjacent to the primary SGD vent site, with nutrient-laden freshwater decreasing pH levels and favoring undersaturated aragonite saturation (Ω arag ) conditions. In contrast, diurnal variability in the carbonate chemistry at other sites along the reef flat was driven by reef community metabolism. Superimposed on the diurnal signal was a transition during the second sampling period to a surplus of total alkalinity (TA) and dissolved inorganic carbon (DIC) compared to ocean end-member TA and DIC measurements. A shift from net community production and calcification to net respiration and carbonate dissolution was identified. This transition occurred during a period of increased SGD-driven nutrient loading, lower wave height, and reduced current speeds. This detailed study of carbon chemistry dynamics highlights the need to incorporate local effects of nearshore oceanographic processes into predictions of coral reef vulnerability and resilience.

Hawaii↗

USGS2009

Deposition and flux of sediment from the Po River, Italy: An idealized and wintertime numerical modeling study

Recent studies of sediment dynamics and clinoform development in the northern Adriatic Sea focused on winter 2002-2003 and provided the data and motivation for development of a detailed sediment-transport model for the area near the Po River delta. We used both idealized test cases and more realistic simulations to improve our understanding of seasonal sediment dynamics there. We also investigated the relationship between physical processes and the observed depositional products; e.g. the accumulation of sediment very near the Po River distributary mouths. Sediment transport near the Po River was evaluated using a three-dimensional ocean model coupled to sediment-transport calculations that included wave- and current-induced resuspension, suspended-sediment transport, multiple grain classes, and fluvial input from the Po River. High-resolution estimates from available meteorological and wave models were used to specify wind, wave, and meteorological forcing. Model results indicated that more than half of the discharged sediment remained within 15??km of the Po River distributary mouths, even after two months of intensive reworking by winter storms. During floods of the Po River, transport in the middle to upper water column dominated sediment fluxes. Otherwise, sediment fluxes from the subaqueous portion of the delta were confined to the bottom few meters of the water column, and correlated with increases in current speed and wave energy. Spatial and temporal variation in wind velocities determined depositional patterns and the directions of sediment transport. Northeasterly Bora winds produced relatively more eastward transport, while southwesterly Sirocco winds generated fluxes towards both the north and the south. Eastward transport accounted for the majority of the sediment exported from the subaqueous delta, most likely due to the frequent occurrence of Bora conditions. Progradation of the Po River delta into the Adriatic Sea may restrict the formation of the Western Adriatic Coastal Current, increasing sediment retention at the Po delta and reducing the supply of sediment to the Apennine margin. A positive morphodynamic feedback may therefore be present whereby the extension of the delta into the Adriatic increases sediment accumulation at the delta and facilitates further progradation. ?? 2009 Elsevier B.V.

Marine Geology↗

USGS2013

Climate change winners: receding ice fields facilitate colony expansion and altered dynamics in an Adélie penguin metapopulation

There will be winners and losers as climate change alters the habitats of polar organisms. For an Adélie penguin (Pygoscelis adeliae) colony on Beaufort Island (Beaufort), part of a cluster of colonies in the southern Ross Sea, we report a recent population increase in response to increased nesting habitat as glaciers have receded. Emigration rates of birds banded as chicks on Beaufort to colonies on nearby Ross Island decreased after 2005 as available habitat on Beaufort increased, leading to altered dynamics of the metapopulation. Using aerial photography beginning in 1958 and modern satellite imagery, we measured change in area of available nesting habitat and population size of the Beaufort colony. Population size varied with available habitat, and both increased rapidly since the 1990s. In accord with glacial retreat, summer temperatures at nearby McMurdo Station increased by ~0.50°C per decade since the mid-1980s. Although the Ross Sea is likely to be the last ocean with an intact ecosystem, the recent retreat of ice fields at Beaufort that resulted in increased breeding habitat exemplifies a process that has been underway in the Ross Sea during the entire Holocene. Furthermore, our results are in line with predictions that major ice shelves and glaciers will retreat rapidly elsewhere in the Antarctic, potentially leading to increased breeding habitat for Adélie penguins. Results further indicated that satellite imagery may be used to estimate large changes in Adélie penguin populations, facilitating our understanding of metapopulation dynamics and environmental factors that influence regional populations.

PLoS ONE↗

USGS2026

The surface elevation table and marker horizon technique: A protocol for measuring wetland elevation dynamics, narrative (Version 2.0)

The National Park Service (NPS), in response to the growing evidence and awareness of the effects of climate change on federal lands, determined that monitoring wetland elevation change is a top priority in North Atlantic Coastal parks (Stevens et al. 2010). As a result, the NPS Northeast Coastal and Barrier Network (NCBN) in collaboration with colleagues from the U.S. Geological Survey (USGS) and the National Oceanic and Atmospheric Administration (NOAA) have developed a protocol for monitoring wetland elevation change and other processes important for determining the viability of wetland communities. Although focused on North Atlantic Coastal parks, this document is applicable to all coastal and inland wetland regions. Wetlands exist within a narrow range of elevation that is influenced by local hydrologic conditions. For tidally influenced coastal wetlands, local hydrologic conditions may be changing as sea levels continue to rise. As sea level rises, coastal wetland systems may either a) build elevation to maintain favorable hydrologic conditions for their survival or b) become increasingly inundated beyond their physiological tolerance resulting in an eventual conversion to open water. A better understanding of these processes will help to determine the present and future viability of coastal wetlands managed by the NPS and can help address measures to ensure these communities exist into the future. This protocol provides the reader with instructions and guidelines on designing a monitoring plan or study to: Quantify elevation change in wetlands with the Surface Elevation Table (SET); understand the processes that influence elevation change, including vertical accretion (SET and Marker Horizon methods); survey the wetland surface and SET mark to a common reference datum to allow for comparing sample stations to each other and to local tidal datums; survey the SET mark to monitor its relative stability; and establish water level equipment to characterize the hydrology and tidal datums for a particular wetland site or sites. The protocol is divided into two documents: The narrative (this document) presents an overview of all aspects of monitoring wetland elevation dynamics, and a document of Standard Operating Procedures (SOPs) with detailed instructions on the design, installation, data collection, and data management in support of monitoring changes in wetland elevation.

Science Report↗

USGS1996

Inelastic models of lithospheric stress - II. Implications for outer-rise seismicity and dynamics

Outer-rise seismicity and dynamics are examined using inelastic models of lithospheric deformation, which allow a more realistic characterization of stress distributions and failure behaviour. We conclude that thrust- and normal-faulting outer-rise earthquakes represent substantially different states of stress within the oceanic lithosphere. Specifically, the normal-faulting events occur in response to downward plate bending, which establishes the ‘standard’, bending-dominated state of outer-rise stress, and the thrust-faulting events occur in response to an elevated level of in-plane compression, which develops only in response to exceptional circumstances. This interpretation accounts for the observation that normal-faulting outer-rise earthquakes occur more frequently and are more widely distributed than their thrust-faulting counterparts, an observation for which the simple bending model offers no explanation. In addition, attributing both thrust- and normal-faulting outer-rise earthquakes to plate bending implies that both classes of events should occur within relatively close lateral proximity to one another because both are allegedly a manifestation of the same bendingdominated stress distribution, whereas, in reality, this is not observed. We propose that the tendency for thrust-faulting outer-rise earthquakes to exhibit greater source depths than their normal-faulting counterparts (an observation that is frequently cited in support of the bending interpretation of the former) is merely a consequence of the fact that bending-induced tension is confined to the upper lithosphere. Our model predicts that outer-rise in-plane-force variations may promote thrust-faulting outerrise activity prior to an underthrusting interplate subduction earthquake and normalfaulting outer-rise activity following such an earthquake, but that both forms of outerrise activity are unlikely to be associated with the same subduction earthquake. A corollary implication of our model is t...

Geophysical Journal International↗

USGS2020

Probabilistic application of an integrated catchment-estuary-coastal system model to assess the evolution of inlet-interrupted coasts over the 21st century

Inlet-interrupted sandy coasts are dynamic and complex coastal systems with continuously evolving geomorphological behaviors under the influences of both climate change and human activities. These coastal systems are of great importance to society (e.g., providing habitats, navigation, and recreational activities) and are affected by both oceanic and terrestrial processes. Therefore, the evolution of these inlet-interrupted coasts is better assessed by considering the entirety of the Catchment-Estuary-Coastal (CEC) systems, under plausible future scenarios for climate change and increasing pressures due to population growth and human activities. Such a holistic assessment of the long-term evolution of CEC systems can be achieved via reduced-complexity modeling techniques, which are also ably quantifying the uncertainties associated with the projections due to their lower simulation times. Here, we develop a novel probabilistic modeling framework to quantify the input-driven uncertainties associated with the evolution of CEC systems over the 21 st century. In this new approach, probabilistic assessment of the evolution of inlet-interrupted coasts is achieved by (1) probabilistically computing the exchange sediment volume between the inlet-estuary system and its adjacent coast, and (2) distributing the computed sediment volumes along the inlet-interrupted coast. The model is applied at three case study sites: Alsea estuary (United States), Dyfi estuary (United Kingdom), and Kalutara inlet (Sri Lanka). Model results indicate that there are significant uncertainties in projected volume exchange at all the CEC systems (min-max range of 2.0 million cubic meters in 2100 for RCP 8.5), and the uncertainties in these projected volumes illustrate the need for probabilistic modeling approaches to evaluate the long-term evolution of CEC systems. A comparison of 50 th percentile probabilistic projections with deterministic estimates shows that the deterministic approach overestimates the sediment volume exchange in 2100 by 15–30% at Alsea and Kalutara estuary systems. Projections of coastline change obtained for the case study sites show that accounting for all key processes governing coastline change along inlet-interrupted coasts in computing coastline change results in projections that are between 20 and 134% greater than the projections that would be obtained if only the Bruun effect were taken into account, underlining the inaccuracies associated with using the Bruun rule at inlet-interrupted coasts.

Frontiers in Applied Mathematics and Statistics↗

USGS2018

Direct measurements of mean Reynolds stress and ripple roughness in the presence of energetic forcing by surface waves

Direct covariance observations of the mean flow Reynolds stress and sonar images of the seafloor collected on a wave‐exposed inner continental shelf demonstrate that the drag exerted by the seabed on the overlying flow is consistent with boundary layer models for wave‐current interaction, provided that the orientation and anisotropy of the bed roughness are appropriately quantified. Large spatial and temporal variations in drag result from nonequilibrium ripple dynamics, ripple anisotropy, and the orientation of the ripples relative to the current. At a location in coarse sand characterized by large two‐dimensional orbital ripples, the observed drag shows a strong dependence on the relative orientation of the mean current to the ripple crests. At a contrasting location in fine sand, where more isotropic sub‐orbital ripples are observed, the sensitivity of the current to the orientation of the ripples is reduced. Further, at the coarse site under conditions when the currents are parallel to the ripple crests and the wave orbital diameter is smaller than the wavelength of the relic orbital ripples, the flow becomes hydraulically smooth. This transition is not observed at the fine site, where the observed wave orbital diameter is always greater than the wavelength of the observed sub‐orbital ripples. Paradoxically, the dominant along‐shelf flows often experience lower drag at the coarse site than at the fine site, despite the larger ripples, highlighting the complex dynamics controlling drag in wave‐exposed environments with heterogeneous roughness.

Journal of Geophysical Research C: Oceans↗

USGS2023

Physicochemical coastal groundwater dynamics between Kauhakō Crater lake and Kalaupapa settlement, Moloka‘i, Hawai‘i

Land-based sources of groundwater pollution can be a critical threat to coral reefs, and a better understanding of “ridge-to-reef” water movement is required to advance management and coral survival in the Anthropocene. In this study a more complete understanding of the geological, atmospheric, and oceanic drivers behind coastal groundwater exchange on the Kalaupapa peninsula, on Moloka‘i, Hawai‘i, is obtained by analyzing high resolution geochemical and geophysical time-series data. In concert with multiyear water level analyses, a tidally and precipitation-driven groundwater connection between Kauhakō Crater lake and submarine groundwater discharge (SGD) fluxes are demonstrated. Results include an average discharge rate of 190 cm d −1 and the detection of water-flow pathways past cesspools that likely contribute to higher nutrient loading near the SGD sites. This underlines the importance of managing anthropogenic nutrients that enter the shallow freshwater lens such as through cesspools and are consequently discharged via SGD onto coral reef habitats.

Hawai'i↗

USGS2024

Wind-wave climate changes and their impacts

Wind-waves have an important role in Earth system dynamics through air–sea interactions and are key drivers of coastal and offshore hydro-morphodynamics that affect communities, ecosystems, infrastructure and operations. In this Review, we outline historical and projected changes in the wind-wave climate over the world’s oceans, and their impacts. Historical trend analysis is challenging owing to the presence of temporal inhomogeneities from increased numbers and types of assimilated data. Nevertheless, there is general agreement over a consistent historical increase in mean wave height of 1–3 cm yr −1 in the Southern and Arctic Oceans, with extremes increasing by >10 cm yr −1 for the latter. By 2100, mean wave height is projected to rise by 5–10% in the Southern Ocean and eastern tropical South Pacific, and by >100% in the Arctic Ocean. By contrast, reductions in mean wave height up to 10% are expected in the North Atlantic and North Pacific, with regional variability and uncertainty for changes in extremes. Differences between 1.5 °C and warmer worlds reveal the potential benefit of limiting anthropogenic warming. Resolving global-scale climate change impacts on coastal processes and atmospheric–ocean–wave interactions requires a step-up in observational and modeling capabilities, including enhanced spatiotemporal resolution and coverage of observations, more homogeneous data products, multidisciplinary model improvement, and better sampling of uncertainty with larger ensembles.

Nature Reviews Earth & Environment↗

USGS2007

Why the sacramento delta area differs from other parts of the great valley: numerical modeling of thermal structure and thermal subsidence of forearc basins

Data on present-day heat flow, subsidence history, and paleotemperature for the Sacramento Delta region, California, have been employed to constrain a numerical model of tectonic subsidence and thermal evolution of forearc basins. The model assumes an oceanic basement with an initial thermal profile dependent on its age subjected to refrigeration caused by a subducting slab. Subsidence in the Sacramento Delta region appears to be close to that expected for a forearc basin underlain by normal oceanic lithosphere of age 150 Ma, demonstrating that effects from both the initial thermal profile and the subduction process are necessary and sufficient. Subsidence at the eastern and northern borders of the Sacramento Valley is considerably less, approximating subsidence expected from the dynamics of the subduction zone alone. These results, together with other geophysical data, show that Sacramento Delta lithosphere, being thinner and having undergone deeper subsidence, must differ from lithosphere of the transitional type under other parts of the Sacramento Valley. Thermal modeling allows evaluation of the rheological properties of the lithosphere. Strength diagrams based on our thermal model show that, even under relatively slow deformation (10 −17 s −1 ), the upper part of the delta crystalline crust (down to 20–22 km) can fail in brittle fashion, which is in agreement with deeper earthquake occurrence. Hypocentral depths of earthquakes under the Sacramento Delta region extend to nearly 20 km, whereas, in the Coast Ranges to the west, depths are typically less than 12–15 km. The greater width of the seismogenic zone in this area raises the possibility that, for fault segments of comparable length, earthquakes of somewhat greater magnitude might occur than in the Coast Ranges to the west.

California↗

USGS2023

Documenting Arctic sea ice dynamics with Global Fiducials Program imagery

For more than 25 years, the U.S. Geological Survey (USGS) has used the remote-sensing capabilities of United States National Imagery Systems (USNIS) to obtain high-resolution electro-optical imagery to monitor Earth’s response to global environmental change. A major focus has been monitoring sea ice behavior in the Arctic Ocean and its marginal seas. In 1997 and 1998, under the direction of the Global Fiducials Program (GFP), USNIS imagery was collected during the Surface Heat Budget of the Arctic Ocean (SHEBA) Project. In 1999, collection of USNIS imagery of six static sea ice sites in the Arctic Ocean and its marginal seas began, and the imagery was archived in the USGS-hosted Global Fiducials Library (GFL). The static sites were imaged through 2014, creating time series of geographically referenced images which scientists have used to study seasonal changes in Arctic ice over the same locations for extended time periods. In early 2009, the Central Intelligence Agency’s MEDEA Program requested that the USGS use USNIS imagery to track movements of sea ice floes during an entire Arctic summer (April through September). The goal was to improve researchers’ understanding of seasonal changes in Arctic sea ice. In order to track and repeatedly capture imagery of the same ice as it drifted across the Arctic Ocean, the USGS developed a methodology and a series of protocols to use data from telemetering drift buoys deployed at locations across the Arctic Ocean by the International Arctic Buoy Programme (IABP) to track the drift of targeted ice masses for periods that exceeded a year. Resulting time series of sea ice imagery, captured while monitoring 38 individual buoys, were archived in the GFL. In 2013 and 2014, in support of the Seasonal Ice Zone Reconnaissance Surveys (SIZRS) Program led by the University of Washington, Seattle, Washington, the USGS requested the collection of USNIS imagery of selected sites in the Beaufort and Chukchi Seas located at every degree of latitude between 70º and 80º N. along a north-south transect. This was done to track and understand the interplay among the ice, atmosphere, and ocean and what it contributes to the rapid decline in summer ice extent that has occurred in recent years. Under the auspices of the GFP, thousands of sea ice images have been collected. Many of those that pass a quality and cloud-cover screening are archived in the GFL. Of these, more than 1,750 sea ice images have been publicly released, following an editing and processing procedure that produces high-resolution degraded images, known as “literal imagery-derived products” or LIDPs. These LIDPs have been approved for free, unrestricted public distribution and scientific analysis. The LIDPs can be downloaded from the USGS Global Fiducials Library Data Access Portal (USGS GFLDAP) at https://www.usgs.gov/global-fiducials-library-data-access-portal . In addition, nonliteral imagery-derived products (nonliteral IDPs), such as metadata, maps, charts, and graphs, have also been released.

Open-File Report↗

USGS2023

Climate change and pulse migration: Intermittent Chugach Inuit occupation of glacial fiords on the Kenai Coast, Alaska

For millennia, Inuit peoples of the Arctic and Subarctic have been challenged by the impacts of climate change on the abundance of key subsistence species. Responses to climate-induced declines in animal populations included switching to alternative food sources and/or migrating to regions of greater availability. We examine these dynamics for the Chugach Inuit (Sugpiat) people of southern coastal Alaska by synthesizing a large body of evidence from archeological sites, including radiocarbon dates and archaeofaunal assemblages, and by applying contemporary knowledge of glaciomarine ecosystems, spatial patterns of resource richness, and ocean-climate induced regime shifts in the Gulf of Alaska. We hypothesize that Chugach groups migrated from Cook Inlet and Prince William Sound to the Kenai Peninsula during periods of low sea surface temperatures (SSTs) to harvest harbor seals, which were seasonally aggregated near tidewater glaciers during pupping season, as well as piscivorous seabirds, Pacific cod, and other species that thrive under cool ocean conditions. During warming phases, the Chugach returned to Cook Inlet and Prince William Sound to fish for salmon and other species that abound during higher SSTs. Drivers of this coupled human-natural system of repeated (pulse) migration include the Pacific Decadal Oscillation (PDO), the dominant pattern of sea surface temperatures in the North Pacific that has been shown to generate step-like regime shifts in the marine food web; and coastal glaciers that structure the functioning of fiord ecosystems and support high levels of biological productivity. The culturally-constructed Chugach niche in the glaciomarine habitat of the Gulf of Alaska was based on intergenerationally transmitted ecological knowledge that enabled a resilient, mobile response to climate and resource variation.

Alaska↗

USGS2006

The origin of neap-spring tidal cycles

The origin of oceanic tides is a basic concept taught in most introductory college-level sedimentology/geology, oceanography, and astronomy courses. Tides are typically explained in the context of the equilibrium tidal theory model. Yet this model does not take into account real tides in many parts of the world. Not only does the equilibrium tidal model fail to explicate amphidromic circulation, it also does not explain diurnal tides in low latitude positions. It likewise fails to explain the existence of tide-dominated areas where neap-spring cycles are synchronized with the 27.32-day orbital cycle of the Moon (tropical month), rather than with the more familiar 29.52-day cycle of lunar phases (synodic month). Both types of neap-spring cycles can be recognized in the rock record. A complete explanation of the origin of tides should include a discussion of dynamic tidal theory. In the dynamic tidal model, tides resulting from the motions of the Moon in its orbit around the Earth and the Earth in its orbit around the Sun are modeled as products of the combined effects of a series of phantom satellites. The movement of each of these satellites, relative to the Earth's equator, creates its own tidal wave that moves around an amphidromic point. Each of these waves is referred to as a tidal constituent. The geometries of the ocean basins determine which of these constituents are amplified. Thus, the tide-raising potential for any locality on Earth can be conceptualized as the result of a series of tidal constituents specific to that region. A better understanding of tidal cycles opens up remarkable opportunities for research on tidal deposits with implications for, among other things, a more complete understanding of the tidal dynamics responsible for sediment transport and deposition, changes in Earth-Moon distance through time, and the possible influences tidal cycles may exert on organisms. ?? 2006 Elsevier B.V. All rights reserved.

Marine Geology↗

USGS2023

Juvenile life history diversity is associated with lifetime individual heterogeneity in a migratory fish

Differences in the life history pathways (LHPs) of juvenile animals are often associated with differences in demographic rates in later life stages. For migratory animals, different LHPs often result in animals from the same population occupying distinct habitats subjected to different environmental drivers. Understanding how demographic rates differ among animals expressing different LHPs may reveal fitness trade-offs that drive the expression of alternative LHPs and enable better prediction of population dynamics in a changing environment. To understand how demographic outcomes and their relationships with environmental variables differ among animals with different LHPs, we analyzed a long-term (2006–2021) mark–recapture dataset for Chinook salmon ( Oncorhynchus tshawytscha ) from the Wenatchee River, Washington, USA. Distinct LHPs represented in this population include either remaining in the natal stream until emigrating to the ocean as a 1-year-old (natal-reach rearing) or emigrating from the natal stream and rearing in downstream habitats for several months before completing the emigration to the ocean as a 1-year-old (downstream rearing). We found that downstream-rearing fish emigrated to the ocean 19 days earlier on average and returned as adults from the ocean at higher rates. We detected a positive correlation between rate of return from the ocean by downstream-rearing fish and coastal upwelling in their spring of outmigration, whereas for natal-reach-rearing fish we detected a positive correlation with sea surface temperature during their first marine summer. Different responses to environmental variability should lead to asynchrony in adult abundance among juvenile LHPs. A higher proportion of downstream-rearing fish returned at younger ages compared with natal-reach-rearing fish, which contributed to variability in age at reproduction and greater mixing across generations. Our results demonstrate how diversity in juvenile LHPs is associated with heterogeneity in demographic rates during subsequent life stages, which can in turn affect variance in aggregate population abundance and response to environmental change. Our findings underscore the importance of considering life history diversity in demographic analyses and provide insights into the effects of life history diversity on population dynamics and trade-offs that contribute to the maintenance of life history diversity.

Washington↗

USGS2019

Application of the Stream Salmonid Simulator (S3) to Klamath River fall Chinook salmon (Oncorhynchus tshawytscha), California—Parameterization and calibration

Executive Summary In this report, we describe application of the Stream Salmonid Simulator (S3) to Chinook salmon ( Oncorhynchus tshawytscha ) in the Klamath River between Keno Dam in southern Oregon and the ocean in northern California. S3 is a deterministic life-stage-structured population model that tracks daily growth, movement, and survival of juvenile salmon. It can track different source populations or species, such as major tributary populations that enter a river like the Klamath River. A key theme of the model is that river flow affects habitat availability and capacity, which in turn drives density-dependent population dynamics. To explicitly link population dynamics to habitat quality and quantity, the river environment is constructed as a one-dimensional series of linked habitat units, each of which has an associated daily time series of discharge, water temperature, and useable habitat area or carrying capacity. In turn, the physical characteristics of each habitat unit and the number of fish occupying each unit affect survival and growth within each habitat unit and movement of fish among habitat units. The physical template of the Klamath River was formed by classifying the river into 2,635 mesohabitat units composed of runs, riffles, and pools. This template enabled modeling of the unimpounded Klamath River between the Keno Dam (the uppermost of four dams) and Iron Gate Dam (the lowermost dam) to address dam-removal scenarios. However, in this report, our focus was on parameterizing and calibrating the model under existing conditions, which included 1,706 discrete habitat units over the 312-kilometer (km) section of river between Iron Gate Dam and the ocean. For each habitat unit, we developed a time series of daily flow, water temperature, and amount of available habitat (weighted usable habitat area [WUA]) for spawners, fry, and parr. WUA time series were constructed using habitat suitability criteria for Chinook salmon applied to eight two-dimensional (2-D) hydrodynamic models that represented the geomorphic variability in habitat across the Klamath River. Results from the 2-D models were then extrapolated to unmodeled habitat units by scaling WUA curves for changes in habitat unit length and width. These variables were then used to drive population dynamics such as egg development and survival and juvenile movement, growth, and survival.

California, Oregon↗

USGS2012

The physical hydrogeology of ore deposits

Hydrothermal ore deposits represent a convergence of fluid flow, thermal energy, and solute flux that is hydrogeologically unusual. From the hydrogeologic perspective, hydrothermal ore deposition represents a complex coupled-flow problem—sufficiently complex that physically rigorous description of the coupled thermal (T), hydraulic (H), mechanical (M), and chemical (C) processes (THMC modeling) continues to challenge our computational ability. Though research into these coupled behaviors has found only a limited subset to be quantitatively tractable, it has yielded valuable insights into the workings of hydrothermal systems in a wide range of geologic environments including sedimentary, metamorphic, and magmatic. Examples of these insights include the quantification of likely driving mechanisms, rates and paths of fluid flow, ore-mineral precipitation mechanisms, longevity of hydrothermal systems, mechanisms by which hydrothermal fluids acquire their temperature and composition, and the controlling influence of permeability and other rock properties on hydrothermal fluid behavior. In this communication we review some of the fundamental theory needed to characterize the physical hydrogeology of hydrothermal systems and discuss how this theory has been applied in studies of Mississippi Valley-type, tabular uranium, porphyry, epithermal, and mid-ocean ridge ore-forming systems. A key limitation in the computational state-of-the-art is the inability to describe fluid flow and transport fully in the many ore systems that show evidence of repeated shear or tensional failure with associated dynamic variations in permeability. However, we discuss global-scale compilations that suggest some numerical constraints on both mean and dynamically enhanced crustal permeability. Principles of physical hydrogeology can be powerful tools for investigating hydrothermal ore formation and are becoming increasingly accessible with ongoing advances in modeling software.

Economic Geology↗

USGS2018

Effect of climate change on disease spread in wildlife

A growing body of evidence indicates that climate change alone, or acting synergistically with current anthropogenic threats, is affecting the health of wild populations of aquatic and terrestrial wildlife. Measurable by-products of climate change include elevated atmospheric concentrations of greenhouse gases, higher average global temperatures; variations in global precipitation patterns, rising and warming oceans, altered hydrographs of rivers, and increased mid-continental drying during summer. These consequences affect the terrestrial environment through shifts in phenology, vegetation cover, and fire regimes. Warmer ocean temperatures, increased acidification, rise in sea levels, and reduction in sea ice cover are also leading to widespread ecological changes in marine systems. Wildlife populations face a variety of climate-related pressures, such as changes in animal distribution or density, limitation of food resources, and alteration to critical habitats. The increased potential for emergence and resurgence of diseases that are responsive to environmental conditions also has implications for wildlife populations. Shifts in temperature or other climatic factors may directly affect the incidence of disease in wildlife by altering host-pathogen interactions, promoting vector populations or allowing new ranges for vectors, or reducing development times for parasites. A number of examples from both field and laboratory studies have demonstrated a clear link between warming environments and disease spread. Many climate-related environmental changes also influence wildlife health indirectly. For example, increasing temperatures, in combination with shifts in rainfall and humidity, may aggravate current trends for water resource limitation and habitat degradation or destruction and lead to increased crowding of animal populations, thereby promoting transmission opportunities of pathogens within populations or across species. Although it may be difficult to disentangle the influences of other anthropogenic changes from the direct effects of warming, some ecosystems provide especially useful models for studying climate-related disease spread in wildlife. For example, the effects of climate change on parasite dynamics may be easily observed in the Arctic, where environmental changes are occurring rapidly, anthropogenic influences are relatively limited, and biodiversity is generally low. Marine ecosystems are also undergoing rapid rates of change and may be vulnerable to a variety of natural and anthropogenic perturbations. Although many factors affect the health of organisms in ocean environments, temperature has been clearly linked to an increase in disease prevalence among sessile organisms such as corals. In this chapter, we discuss observed and predicted changes to wildlife health resulting from climate change. Our review will not include all aspects of wildlife health, but will instead focus on established or suspected links between climate drivers and disease spread and discuss examples from the current literature. Here, we define disease spread to include: 1) change in geographical or altitudinal distribution of pathogens, parasites, and vectors and the diseases they cause; 2) change in prevalence or severity of disease; and 3) emergence of novel diseases. Additionally, because wildlife species serve as reservoirs for zoonotic diseases that affect both animals and humans, we include select examples of the effect of climate change on the capacity of wildlife to harbor and spread these disease agents.

Book chapter↗

USGS2011

Hydrodynamics of a bathymetrically complex fringing coral reef embayment: Wave climate, in situ observations, and wave prediction

This paper examines the relationship between offshore wave climate and nearshore waves and currents at Hanalei Bay, Hawaii, an exposed bay fringed with coral reefs. Analysis of both offshore in situ data and numerical hindcasts identify the predominance of two wave conditions: a mode associated with local trade winds and an episodic pattern associated with distant source long-period swells. Analysis of 10 months of in situ data within the bay show that current velocities are up to an order of magnitude greater during long-period swell episodes than during trade wind conditions; overall circulation patterns are also fundamentally different. The current velocities are highly correlated with incident wave heights during the swell episodes, while they are not during the modal trade wind conditions. A phase-averaged wave model was implemented with the dual purpose of evaluating application to bathymetrically complex fringing reefs and to examine the propagation of waves into the nearshore in an effort to better explain the large difference in observed circulation during the two offshore wave conditions. The prediction quality of this model was poorer for the episodic condition than for the lower-energy mode, however, it illustrated how longer-period swells are preferentially refracted into the bay and make available far more nearshore wave energy to drive currents compared to waves during modal conditions. The highly episodic circulation, the nature of which is dependent on complex refraction patterns of episodic, long-period swell has implications for flushing and sediment dynamics for incised fringing reef-lined bays that characterize many high islands at low latitudes around the world.

Hawai'i↗