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USGS2025

Population and outmigration characteristics of juvenile Bull Trout in a montane ecosystem

Bull Trout Salvelinus confluentus is a federally threatened species in the conterminous United States. Although some populations are stable or increasing, Bull Trout in the United States Fish and Wildlife Service's designated Coeur d'Alene Core Area in Idaho have experienced substantial declines in abundance. Today, the remaining extant population in the Coeur d'Alene Core Area returns to the headwaters of the St. Joe River to spawn. The population has been monitored annually since 1992 using spawning ground surveys, but little is known about early life stages in the system. The objective of our research was to evaluate the distribution and abundance, age and size structure, habitat associations, and outmigration characteristics of juvenile Bull Trout in the upper St. Joe River basin. In 2022–2023, we sampled 200 stream reaches on the mainstem St. Joe River and four tributaries (Heller, Medicine, Sherlock, and Wisdom creeks). We sampled 1,529 Bull Trout varying in length from 29−257 mm in total length (TL; mean ± SD; 108 ± 44 mm). Population estimates suggested there were 1,841 (95% CI = 1,188−2,494) juvenile Bull Trout in the study area in 2022 and 2,388 (1,646−3,130) in 2023. Regression models indicated that abundance was positively related to canopy cover, amount of large substrate, amount of large woody debris, and amount of gravel, and negatively related to water temperature. We tagged 1,142 fish with passive integrated transponders (PIT) and detected 163 (14%) of these fish using a stationary tag array that was operational during June or July through October. Peak autumn outmigration occurred in October of both sampling years. Of the fish that were detected moving, age varied from 1−4 years, but age-1 and age-2 fish were more commonly detected moving downstream compared to other age classes. This study provides important information on the ecology of juvenile Bull Trout that can be used to guide conservation and recovery efforts in montane ecosystems. Furthermore, juvenile Bull Trout in the upper St. Joe River basin were present at similar densities and experienced growth rates similar to more robust adfluvial populations (e.g., Lake Pend Oreille, Idaho), thereby indicating that factors contributing to the low abundance of adults are not likely occurring in the headwaters of the St. Joe River. Thus, conservation efforts may be more successful if they are focused on the migration corridor and Coeur d'Alene Lake.

Idaho↗

USGS2004

Yellowstone grizzly bear investigations: Annual report of the Interagency Grizzly Bear Study Team, 2003

The contents of this Annual Report summarize results of monitoring and research from the 2003 field season. The report also contains a summary of nuisance grizzly bear ( Ursus arctos horribilis ) management actions. The study team continues to work on issues associated with counts of unduplicated females with cubs-of-the-year (COY). These counts are used to establish a minimum population size, which is then used to establish mortality thresholds for the Recovery Plan (U.S. Fish and Wildlife Service [USFWS] 1993). A computer program that defines the rule set used by Knight et al. (1995) to differentiate unique family groups is currently under development. Once complete, we intend to use it to verify the accuracy of the rules using known bears and their telemetry locations in test runs. We hope to have this work complete by summer 2004. The grizzly bear recovery plan (USFWS 1993) established mortality quotas at 4% of the minimum population estimate derived from female with COY data and no more than 30% of the 4% (1.2%) could be female bears. Simulation modeling (Harris 1984) established sustainable mortality at around 6% of the population. We used the latest information on reproduction and survival to estimate population trajectory in the same simulation model originally used by Harris. A Wildlife Monograph has been drafted and submitted for consideration as a publication. We anticipate final word sometime during winter 2005. Our project addressing the potential application of stable isotopes and trace elements to quantify consumption rates of whitebark pine ( Pinus albicaulis ) and cutthroat trout ( Oncorhynchus clarki ) by grizzly bears was completed. Our manuscript on consumption rates of whitebark pine has been published (Canadian Journal of Zoology 81:763-770). A copy can be found on the Interagency Grizzly Bear Study Team (IGBST) website http://www.nrmsc.usgs.gov/research/igbst-home.htm. The manuscript on fish consumption is in final review and should be published in 2004. We began a new study in Grand Teton National Park evaluating habitat use both temporally and spatially between grizzly and black ( Ursus americanus ) bears. We will employ a new form of Global Positioning System (GPS) technology that incorporates a spread spectrum communication system. Spread spectrum allows for transfer of stored GPS locations from the collar to a remote receiving station. We tested 2 collars during the fall of 2003 and provide a summary of the results. We will attempt to deploy several of these collars during the 2004 field season. The annual reports of the IGBST summarize annual data collection. Because additional information can be obtained after publication, data summaries are subject to change. For that reason, data analyses and summaries presented in this report supersede all previously published data. The study area and sampling techniques are reported by Blanchard (1985), Mattson et al. (1991a), and Haroldson et al. (1998).

Montana↗

USGS2019

Discriminating among Pacific salmon, Rainbow Trout, and Atlantic Salmon species using common genetic screening methods

The five most common species of Pacific salmon, Rainbow Trout (steelhead) Oncorhynchus spp., and Atlantic Salmon Salmo salar intermingle in the North Pacific Ocean and its freshwater tributaries. Efficient morphological methods for distinguishing among these species are sometimes limited by condition of the specimen (degraded or missing morphology), life history stage, or training of the observer. Researchers have successfully applied various genetic methods to distinguish among these species when morphological analyses are not possible, but they cannot easily incorporate these methods into standard fish and wildlife population monitoring analysis workflows. Here we test five 5′–3′ exonuclease (TaqMan) assays developed from mitochondrial genes and provide novel methods that take advantage of TaqMan output to distinguish among these species. We found that combinations of as few as two of the five assays were adequate to distinguish all species. TaqMan chemistry is designed to interrogate a single nucleotide locus. We also explore the basis for the variation in the observed scatter plot distributions (variation in florescent signals) and show that this variation is due to nucleotide diversity in and near the probe site. Because the SNPs underlying the assays developed here are all physically close to one another along the mitochondrial genome, the potential exists to develop a single DNA sequence-based assay to discriminate among salmon species. This single assay can be added to a genotyping-by-sequencing panel to identify and exclude nontarget species from analyses.

Journal of Fish and Wildlife Management↗

USGS2009

Relative abundance and species richness of cerambycid beetles in partial cut and uncut bottomland hardwood forests

Partial cutting techniques are increasingly advocated and used to create habitat for priority wildlife. However, partial cutting may or may not benefit species dependent on deadwood; harvesting can supplement coarse woody debris in the form of logging slash, but standing dead trees may be targeted for removal. We sampled cerambycid beetles during the spring and summer of 2006 and 2007 with canopy malaise traps in 1- and 2-year-old partial cut and uncut bottomland hardwood forests of Louisiana. We captured a total of 4195 cerambycid beetles representing 65 species. Relative abundance was higher in recent partial cuts than in uncut controls and with more dead trees in a plot. Total species richness and species composition were not different between treatments. The results suggest partial cuts with logging slash left on site increase the abundance of cerambycid beetles in the first few years after partial cutting and that both partial cuts and uncut forest should be included in the bottomland hardwood forest landscape.

Canadian Journal of Forest Research↗

USGS2019

Noninvasive identification of cryptic herpetofauna from fecal samples: A novel approach pairing conservation dog surveys and genetic analysis

Noninvasive fecal sampling combined with genetic analysis is a powerful technique allowing the study of elusive or otherwise difficult to monitor species without the need for direct contact. While this method is widely used in birds and mammals, it has never been successfully applied on a large scale in reptiles. The blunt-nosed leopard lizard (Gambelia sila) is an endangered species endemic to the San Joaquin Desert of California. Presently, acquiring data on G. sila for research and management involves more traditional methods such as live capture to obtain tissue samples for DNA analysis, or observation via visual surveys, which are also used for regulatory monitoring in accordance with wildlife agency protocols. Here we describe an innovative approach for gathering additional information, that combines use of conservation detection dogs trained to locate G. sila scat samples with genetic analysis for identifying and distinguishing among sympatric lizard species. We developed two PCR assays that produce fluorescently labelled amplicons of species-specific fragment length for six lizard species in the study area. Using these assays we genetically identifed to species 78% (255 of 327) of samples collected by dog-handler teams across four years. The majority of the genetically identifed samples (82.4%; 210 of 255) were confirmed as originating from G. sila. Beyond the immediate application of these techniques for the study and monitoring of G. sila, our ability to recover usable DNA and to differentiate among a diverse group of lizards highlights the broad potential of our methodology for noninvasive sampling in reptiles.

California↗

USGS2023

Influence of human development and predators on patterns of Virginia opossum occupancy, abundance, and activity

As human development continues to expand, wildlife must relocate or adapt to survive. Many mammalian mesopredators, such as the Virginia opossum ( Didelphis virginiana ), have adapted to living alongside human development. Furthermore, top-down predation pressure may be altered in nuanced ways within the human environment. Species such as opossums may be shielded from predation by human development or behavioral changes in predators. Understanding how dominant and subordinate mesopredators co-exist across natural and developed areas will provide insight into how wildlife communities are structured. Our objective was to evaluate how opossum occupancy, abundance, and activity were associated with human development and the relative abundance of their predators. We used data from a nationwide camera trapping study, Snapshot USA, to estimate opossum occupancy, abundance, and activity. We related these measures to the surrounding landscape and urbanization variables. We found that opossum occupancy was positively associated with anthropogenic sound (a surrogate for human activity). Furthermore, opossums in heavily forested areas were more likely to be detected in locations with higher predicted anthropogenic sounds. In areas with a high density of human housing, opossum relative abundance increased when predator abundance increased. We also found opossums were strictly nocturnal and shifted their activity to earlier in the evening in the presence of high predator abundance. Our results suggest that humans and their urban development can have multidimensional impacts on opossum behavior and occurrence, and could facilitate changes in predator–prey dynamics. Future research should evaluate if the association of opossums with urban areas is due to human-subsidized resources or caused by reduced mortality from altered predator–prey dynamics.

Journal of Zoology↗

USGS2001

Estimation of population size using open capture-recapture models

One of the most important needs for wildlife managers is an accurate estimate of population size. Yet, for many species, including most marine species and large mammals, accurate and precise estimation of numbers is one of the most difficult of all research challenges. Open-population capture-recapture models have proven useful in many situations to estimate survival probabilities but typically have not been used to estimate population size. We show that open-population models can be used to estimate population size by developing a Horvitz-Thompson-type estimate of population size and an estimator of its variance. Our population size estimate keys on the probability of capture at each trap occasion and therefore is quite general and can be made a function of external covariates measured during the study. Here we define the estimator and investigate its bias, variance, and variance estimator via computer simulation. Computer simulations make extensive use of real data taken from a study of polar bears (Ursus maritimus) in the Beaufort Sea. The population size estimator is shown to be useful because it was negligibly biased in all situations studied. The variance estimator is shown to be useful in all situations, but caution is warranted in cases of extreme capture heterogeneity.

Journal of Agricultural, Biological, and Environme↗

USGS1988

Monitoring wildlife habitat: A critique of approaches

Naturalists have long recognized that wildlife cannot exist in a natural state without adequate habitat. Habitat monitoring is an effort to monitor the physical conditions that provide life support for the species, given the underlying assumption that if the habitat is available the species will respond and fill that habitat with viable populations. Techniques for habitat monitoring are varied and depend on the species involved, geographical area, and resources available. At a very gross level, habitat monitoring may be little more than the monitoring of major vegetative associations: time series analysis of aerial photography is an excellent mechanism to monitor the changes in hectares of specified vegetative associations, which are surrogate measures of habitat. One approach uses population monitoring to determine habitat availability. Unfortunately, many researchers fail to recognize that population levels may or may not reflect habitat quality or habitat availability. Another approach is to monitor species richness or species diversity. Finally, the habitat components that compose quality habitat for a species or species group can be used for monitoring. This approach results in the identification of important habitat attributes that can be measured independent of the presence of the species. A thorough understanding of the biological system being monitored is paramount to the development of sound monitoring study design.

Statistical Journal of the United Nations ECE↗

USGS1992

Organochlorines and mercury in osprey eggs from the eastern United States

Organochlorine and mercury concentrations were determined in Osprey eggs collected from Maryland, Virginia, and Massachusetts during 1986-87. DDE concentrations were significantly different among locations. Median DDE concentrations did not decline significantly in eggs from Glenn L. Martin National Wildlife Refuge, Maryland, between 1973 and 1986. The median DDE residue for eggs from Martin Refuge in 1986 surpassed the value associated with 10% eggshell thinning, but was below the value associated with production of 1.0 young per active nest, a level assumed to represent a stable population. DDD, DDT, dieldrin, PCB, and mercury residues in all eggs appeared insignificant with regard to potential effects on shell thickness or reproduction. DDE and PCB residues were lower in eggs collected in 1986-87 than in those collected in the 1970s for each area. DDD, DDT, and dieldrin were not detected in Martin Refuge eggs in 1986, representing a significant reduction since 1973. DDD, DDT, and dieldrin levels in Massachusetts and Virginia eggs in 1986-87 were similar to those in eggs from the 1970s for each state. Mercury residues in eggs from Martin Refuge may be increasing and although not significant in this study, may warrant future monitoring.

Journal of Raptor Research↗

USGS2015

Blood lead exposure concentrations in mottled ducks ( Anas fulvigula ) on the upper Texas coast

The mottled duck (Anas fulvigula) is a non-migratory waterfowl species dependent upon coastal marsh systems, including those on the Texas Chenier Plain National Wildlife Refuge (NWR) Complex, and considered a regional indicator species of marsh habitat quality. Research from the early 1970s, 1990s, and early-2000s indicated that mottled ducks continued to exhibit elevated wing-bone lead (Pb) concentrations, decades after implementation of non-toxic shot regulations. However, wing-bone concentrations reflect lifetime accumulation of Pb, whereas blood Pb concentrations reflect more recent exposure. To identify current potentially relevant temporal windows of Pb exposure, we collected 260 blood samples from mottled ducks during summer (n=124) and winter (n=136) from 2010–2012 on the Texas Chenier Plain NWR Complex. We quantified baseline blood Pb concentrations for all ages of mottled ducks, and hypothesized that blood lead concentrations would remain elevated above background levels (200 µg L–1) despite the 1983 and 1991 lead shot bans. Blood Pb concentrations ranged from below detection limits to >12,000 µg L–1, where >200 µg L–1 was associated with exposure levels above background concentrations. Male mottled ducks had the greatest blood Pb concentrations (30 times greater than females) with concentrations greater during winter than summer. Likewise, the proportion of exposed (>200 µg L–1) females increased from 14%–47% from summer to winter, respectively. Regardless of sex, adult mottled duck blood Pb concentrations were five times greater than juveniles, particularly during winter. We identified five plausible models that influenced blood Pb levels where year, site, and interactions among age*sex*season and between age*season were included in the top-ranked models. Frequency of exposure was greatest during winter, increasing from 12% in summer to 55% in winter, indicating that a temporal exposure window to environmental Pb exists between nesting and hunting seasons. Blood Pb concentrations remain elevated in mottled ducks despite Pb shot bans enacted >25 years prior to this study. If Pb levels in mottled ducks becomes a conservation concern, regional monitoring of blood Pb concentrations would be appropriate with a focus upon elucidating potential reasons for the variation among age and sex groups. Finally, identifying potentially available sources of environmental Pb may be key to minimizing this apparently persistent threat to mottled ducks on the upper Texas coast.

Journal of the Southeastern Association of Fish an↗

USGS2019

Demographic factors affecting population growth in giant gartersnakes

Demographic models provide insight into which vital rates and life stages contribute most to population growth. Integral projection models (IPMs) offer flexibility in matching model structure to a species’ demography. For many rare species, data are lacking for key vital rates, and uncertainty might dissuade researchers from attempting to build a demographic model. We present work that highlights how the implications of uncertainties and unknowns can be explored by building and analyzing alternative models. We constructed IPMs for the threatened giant gartersnake ( Thamnophis gigas ) based on published studies to determine where management efforts could be targeted to have the greatest effect on population persistence and what unknowns remain for future research. Given uncertainty in the survival of snakes during their first year, and in the form of the size‐survival relationship, we modeled a range of scenarios and evaluated where models agree about factors influencing population growth and where discrepancies exist. For most scenarios, the survival of large adult females had the greatest influence on population growth, but the relative importance of juvenile versus adult somatic growth for population growth was dependent on the recruitment probability and the shape of the size‐survival function. More data on temporal variation and covariance among vital rates would improve stochastic models for the giant gartersnake. This paper demonstrates the effectiveness of IPMs for studying the demography of reptiles and the value of the model‐building process for formalizing what is known and unknown about the demography of rare species. Published 2019. This article is a U.S. Government work and is in the public domain in the USA.

California↗

USGS2014

Nocturnal field use by fall migrating American woodcock in the Delta of Arkansas

The American woodcock ( Scolopax minor ) population has declined since the late 1960s across its range and is now considered a species of special concern. Research on woodcock habitat use during migration and migratory routes through the Central Flyway has been limited. We assessed woodcock phenology, estimated density, and nocturnal habitat use in fields on public lands in the lower Mississippi Alluvial Valley portion of Arkansas during November and December of 2010 and 2011. We used all-terrain vehicles to survey woodcock along transects in 67 fields of 8 field types. We analyzed data using hierarchical distance sampling. We detected woodcock from the first week in November through the third week in December but in low numbers. We did not detect woodcock in millet or rice fields, whereas woodcock had the highest estimated densities in unharvested soybeans. All other crop type-post-harvest management combinations had low woodcock densities. We did not detect woodcock in fields <8 ha or >40 ha. Woodcock in the lower Mississippi Alluvial Valley may benefit from management for unharvested soybean fields of moderate size (approx. 8-40ha).

Journal of Wildlife Management↗

USGS2014

What predicts support for antler point restrictions?

Although considerable research has focused on satisfaction with recreation experiences, limited work has examined factors related to regulatory support. In 2005, an antler point restriction (APR) regulation was introduced for hunting white-tailed deer ( Odocoileus virginianus ) in Minnesota’s Itasca State Park. Hunter surveys were conducted following the 2005, 2006, 2007, and 2009 seasons. We modeled how (a) satisfaction with the deer seen, (b) type of deer pursued, (c) agency trust, and (d) years of deer-hunting experience, influenced support for the APR, and compared the model over the four survey years. Type of deer pursued and agency trust were the strongest predictors of APR support, followed by satisfaction with deer seen, and years of hunting experience. Hunters who targeted big bucks, had more trust in the agency, and expressed more satisfaction with deer seen in the field, were more supportive of the APR. Hunters who had more deer-hunting experience were less supportive.

Human Dimensions of Wildlife: An International Jou↗

USGS2023

Validating a non-lethal method of aging endangered juvenile Lost River and Shortnose Suckers

Populations of imperiled Lost River Deltistes luxatus and Shortnose Chasmistes brevirostris suckers in Upper Klamath Lake, Oregon, are experiencing long-term decreases in abundance due to limited recruitment of juvenile suckers into the adult populations. Researchers use estimated ages based on fin rays to study environmental factors affecting year-class formation, generate annual juvenile sucker survival indices, and study variations in early life history. Biased or imprecise age estimates can lead to erroneous conclusions and have implications for age-based survival estimates, indications of recruitment, and growth estimators. We examined fin rays collected from individual suckers captured on multiple occasions and determined that juvenile suckers deposit a translucent increment on fin rays annually. Size-at-age data for suckers first captured as young as age 0 corroborated our finding of annual increment formation and indicate that the first increments are formed at age 1. We used edge and marginal increment analysis conducted on fin rays to determine the timing of annual increment formation. Our results indicate that increment formation occurs on fin rays of juvenile suckers from October to May and peaks between February and April.

Oregon↗

USGS2017

Behavioral responses of Pacific lamprey to alarm cues

Pacific lamprey ( Entosphenus tridentatus ), an anadromous ectoparasite, faces several challenges during adult migration to spawning grounds. Developing methods to address these challenges is critical to the success of ongoing conservation efforts. The challenges are diverse, and include anthropogenic alterations to the ecosystem resulting in loss of habitat, impassable barriers such as dams, climate change impacts, and altered predator fields. We conducted a behavioral study to understand how adult migrating Pacific lamprey respond to potential alarm cues: White Sturgeon ( Acipenser transmontanus ), human saliva, decayed Pacific lamprey, and river otter ( Lontra canadensis ). Research has shown that some species of lamprey can be guided to a location using odors and similar cues may be useful as a management tool for Pacific lamprey. Experiments were conducted over 2 nights and measured the number of entries (count) and duration of time spent (occupancy) by adult lamprey in each arm of a two-choice maze. During the first night, no odor was added to test for selection bias between arms. During the second night odor was added to one arm of the maze. Contrary to expectations, lamprey were significantly attracted to the river otter odor in both count and occupancy. No significant differences were found in the response of lamprey to the other three odors. Results from this study indicate that Pacific lamprey do respond to some odors; however, additional tests are necessary to better identify the types of odors and concentrations that elicit a repeatable response.

Oregon, Washington↗

USGS1993

Effects of harness transmitters on behavior and reproduction of wild mallards

Radio telemetry has been an important research tool in waterfowl studies for >20 years, yet little effort has been made to evaluate potential effects of transmitters on the birds that carry them. As part of a 4-year mallard (Anas platyrhynchos) study in the prairie pothole region of North Dakota and Minnesota, we compared radio-marked and unmarked female mallards in terms of percent time observed feeding, resting, and preening; nest initiation date; and clutch size and egg volume. Radio-marked females carried a 23-g back-mounted transmitter attached with a 2-loop harness (Dwyer 1972). On average, radio-marked females tended to feed less, rest and preen more, initiate nests later, and lay smaller clutches and eggs than unmarked females. Thus, behavioral and reproductive data from ducks marked with back-mounted harness-attached transmitters may be biased. We recommend that new designs of radio packages be field tested and caution that effects may be masked under extreme environmental conditions.

Journal of Wildlife Management↗

USGS2016

Reproductive success and habitat characteristics of Golden-winged Warblers in high-elevation pasturelands

The Golden-winged Warbler ( Vermivora chrysoptera ) is one of the most rapidly declining vertebrate species in the Appalachian Mountains. It is the subject of extensive range-wide research and conservation action. However, little is known about this species' breeding ecology in high-elevation pasturelands, a breeding habitat with conservation potential considering the U.S. Natural Resource Conservation Service's Working Lands for Wildlife program targeting private lands in the Appalachian Mountains. We located 100 nests of Golden-winged Warblers in pastures in and around the Monongahela National Forest in West Virginia during 2008–2012. Daily nest survival rate (mean ± SE = 0.962 ± 0.006), clutch size (4.5 ± 0.1), and number of young fledged per nest attempt (2.0 ± 0.2) and successful nest (4.0 ± 0.1) fell within the range of values reported in other parts of the species' range and were not significantly affected by year or the presence/absence of cattle grazing. Classification tree analysis revealed that nests were in denser vegetation (≥52%) and closer to forest edges (<36.0 m) and shrubs (<7.0 cm) than random locations within the male's territory. Successful nests had significantly more woody cover (≥9%) within 1 m than failed nests. Our results suggest that cattle grazing at 1.2–2.4 ha of forage/animal unit with periodic mowing can create and maintain these characteristics without interfering with the nesting of Golden-winged Warblers. High-elevation pasturelands may provide a refuge for remaining populations of Golden-winged Warblers in this region.

Wilson Journal of Ornithology↗

USGS2001

Trail resource impacts and an examination of alternative assessment techniques

Trails are a primary recreation resource facility on which recreation activities are performed. They provide safe access to non-roaded areas, support recreational opportunities such as hiking, biking, and wildlife observation, and protect natural resources by concentrating visitor traffic on resistant treads. However, increasing recreational use, coupled with poorly designed and/or maintained trails, has led to a variety of resource impacts. Trail managers require objective information on trails and their conditions to monitor trends, direct trail maintenance efforts, and evaluate the need for visitor management and resource protection actions. This paper reviews trail impacts and different types of trail assessments, including inventory, maintenance, and condition assessment approaches. Two assessment methods, point sampling and problem assessment, are compared empirically from separate assessments of a 15-mile segment of the Appalachian Trail in Great Smoky Mountains National Park. Results indicate that point sampling and problem assessment methods yield distinctly different types of quantitative information. The point sampling method provides more accurate and precise measures of trail characteristics that are continuous or frequent (e.g., tread width or exposed soil). The problem assessment method is a preferred approach for monitoring trail characteristics that can be easily predefined or are infrequent (e.g., excessive width or secondary treads), particularly when information on the location of specific trail impact problems is needed. The advantages and limitations of these two assessment methods are examined in relation to various management and research information needs. The choice and utility of these assessment methods are also discussed.

Journal of Park and Recreation Administration↗