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At least 289 records · Page 16Linked to original sources
USGS2012

Comparison of soil thickness in a zero-order basin in the Oregon Coast Range using a soil probe and electrical resistivity tomography

Accurate estimation of the soil thickness distribution in steepland drainage basins is essential for understanding ecosystem and subsurface response to infiltration. One important aspect of this characterization is assessing the heavy and antecedent rainfall conditions that lead to shallow landsliding. In this paper, we investigate the direct current (DC) resistivity method as a tool for quickly estimating soil thickness over a steep (33–40°) zero-order basin in the Oregon Coast Range, a landslide prone region. Point measurements throughout the basin showed bedrock depths between 0.55 and 3.2 m. Resistivity of soil and bedrock samples collected from the site was measured for degrees of saturation between 40 and 92%. Resistivity of the soil was typically higher than that of the bedrock for degrees of saturation lower than 70%. Results from the laboratory measurements and point-depth measurements were used in a numerical model to evaluate the resistivity contrast at the soil-bedrock interface. A decreasing-with-depth resistivity contrast was apparent at the interface in the modeling results. At the field site, three transects were surveyed where coincident ground truth measurements of bedrock depth were available, to test the accuracy of the method. The same decreasing-with-depth resistivity trend that was apparent in the model was also present in the survey data. The resistivity contour of between 1,000 and 2,000 Ωm that marked the top of the contrast was our interpreted bedrock depth in the survey data. Kriged depth-to-bedrock maps were created from both the field-measured ground truth obtained with a soil probe and interpreted depths from the resistivity tomography, and these were compared for accuracy graphically. Depths were interpolated as far as 16.5 m laterally from the resistivity survey lines with root mean squared error (RMSE) = 27 cm between the measured and interpreted depth at those locations. Using several transects and analysis of the subsurface material properties, the direct current (DC) resistivity method is shown to be able to delineate bedrock depth trends within the drainage basin.

Oregon↗
USGS2024

A ‘how-to’ guide for estimating animal diel activity using hierarchical models

Animal diel activity patterns can aid understanding of (a) how species behaviourally adapt to anthropogenic and natural disturbances, (b) mechanisms of species co-existence through temporal partitioning, and (c) community or ecosystem effects of diel activity shifts. Activity patterns often vary spatially, a feature ignored by the kernel density estimators (KDEs) currently used for estimating diel activity. Ignoring this source of heterogeneity may lead to biased estimates of uncertainty and misleading conclusions regarding the drivers of diel activity. Thus, there is a need for more flexible statistical approaches for estimating activity patterns and testing hypotheses regarding their biotic and abiotic drivers. We illustrate how trigonometric terms and cyclic cubic splines combined with hierarchical models can provide a valuable alternative to KDEs. Like KDEs, these models accommodate circular data, but they can also account for site-to-site and other sources of variability, correlation amongst repeated measures, and variable sampling effort. They can also more readily quantify and test hypotheses related to the effects of covariates on activity patterns. Through empirical case studies, we illustrate how hierarchical models can quantify changes in activity levels due to seasonality and in response to biotic and abiotic factors (e.g. anthropogenic stressors and co-occurrence). We also describe frequentist and Bayesian approaches for quantifying site-specific (conditional) and population-averaged (marginal) activity patterns. We provide guidelines and tutorials with detailed step-by-step instructions for fitting and interpreting hierarchical models applied to time-stamped data, such as those recorded by camera traps and audio recorders. We conclude that this approach offers a viable, flexible, and effective alternative to KDEs when modelling animal activity patterns.

Journal of Animal Ecology↗
USGS2005

Understanding the output of a Smith-Root GPP electrofisher

There is confusion among biologists about the use of the percent of range control in the GPP series of Smith-Root electrofishers. We evaluated the output of a GPP 7.5 electrofisher to examine how adjustments to the percent of range control affect voltage, pulse width, duty cycle, and waveform. We found that contrary to how most users interpret the labels on the GPP unit, adjustments to the percent of range control are linked only indirectly to changes in peak voltage. Suggestions for dealing with the restrictions of the GPP units are offered. ?? Copyright by the American Fisheries Society 2005.

North American Journal of Fisheries Management↗
USGS2021

Testing hypotheses on signatures of precipitation variability in the river and floodplain deposits of the Paleogene San Juan Basin, New Mexico, USA

Much progress has been made in recent years towards a set of recognition criteria for river discharge variability in river channel deposits, and thus sedimentary proxies for precipitation variability. Despite this progress, there is currently no consensus on how different styles of discharge variability are reflected in river sedimentary records, and whether variable-discharge river records from different climate types can be distinguished. Herein, river discharge and precipitation variability in the Paleogene is investigated using associations between river channel and floodplain deposits across the Paleocene-Eocene boundary from the Paleocene upper Nacimiento Formation and the early Eocene San Jose Formation in the San Juan Basin, New Mexico, USA. The succession is identified as deposits of variable-discharge river systems based on shared channel-deposit characteristics with modern and ancient variable-discharge river systems and the proposed facies models, in addition to alternations of poorly drained and well-drained floodplain deposits and/or slickensides indicating alternating wet-dry cycles. A long-term stratigraphic trend toward increasingly well-drained floodplain deposits is also observed and hypothesized to indicate successively more arid conditions from the Paleocene into the early Eocene. Comparisons with modern rivers from various climate zones suggest a long-term shift from a monsoonal climate in the Paleocene, to a fluctuating subhumid climate, ultimately leading to semiarid to arid conditions in the early Eocene. These observations suggest that floodplain deposits may be a better indicator of ambient climate, whereas channel deposits are records for frequency and magnitude of high-intensity precipitation events. Therefore, the existing facies models for variable-discharge rivers that consider only channel facies may not capture critical information needed to make accurate interpretations of paleoclimatic conditions. This study also adds to a growing body of evidence from geologic records of mid-latitude Paleogene river systems suggesting increases in the magnitude or variability of river discharge coinciding with established climate perturbations.

New Mexico↗
USGS2004

Detection of human enteric viruses in stream water with RT-PCR and cell culture

A multiplex RT-PCR method was used to measure virus occurrence at five stream water sites that span a range of hydroclimatic, water-quality, and land-use characteristics. The performance of the molecular method was evaluated in comparison with traditional cell culture and Escherichia coli membrane filtration assays. The study incorporated multiple quality controls and included a control for virus recovery during the sampling procedure as well as controls to detect potentially false-negative and false-positive data. Poliovirus recovery ranged from 16 to 65% and was variable, even in samples collected within the same stream. All five sites were positive for viruses by both molecular and cell culture-based virus assays. Enteroviruses, reoviruses, rotaviruses, and hepatitis A viruses were detected, but the use of the quality controls proved critical for interpretation of the molecular data. All sites showed evidence of faecal contamination, and culturable viruses were detected in four samples that would have met the US Environmental Protection Agency's recommended E. coli guideline for safe recreational water.

Journal of Water and Health↗
USGS2022

From data to interpretable models: Machine learning for soil moisture forecasting

Soil moisture is critical to agricultural business, ecosystem health, and certain hydrologically driven natural disasters. Monitoring data, though, is prone to instrumental noise, wide ranging extrema, and nonstationary response to rainfall where ground conditions change. Furthermore, existing soil moisture models generally forecast poorly for time periods greater than a few hours. To improve such forecasts, we introduce two data-driven models, the Naive Accumulative Representation (NAR) and the Additive Exponential Accumulative Representation (AEAR). Both of these models are rooted in deterministic, physically based hydrology, and we study their capabilities in forecasting soilmoisture over time periods longer than a fewhours. Learned model parameters represent the physically based unsaturated hydrological redistribution processes of gravity and suction. We validate our models using soil moisture and rainfall time series data collected from a steep gradient, post-wildfire site in southern California. Data analysis is complicated by rapid landscape change observed in steep, burned hillslopes in response to even small to moderate rain events. The proposed NAR and AEAR models are, in forecasting experiments, shown to be competitive with several established and state-of-the-art baselines. The AEAR model fits the data well for three distinct soil textures at variable depths below the ground surface (5, 15, and 30 cm). Similar robust results are demonstrated in controlled, laboratory-based experiments. Our AEAR model includes readily interpretable hydrologic parameters and provides more accurate forecasts than existing models for time horizons of 10–24 h. Such extended periods of warning for natural disasters, such as floods and landslides, provide actionable knowledge to reduce loss of life and property.

International Journal of Data Science and Analytic↗
USGS2022

Earthquake-derived seismic velocity changes during the 2018 caldera collapse of Kīlauea volcano

The 2018 Kīlauea caldera collapse produced extraordinary sequences of seismicity and deformation, with 62 episodic collapse events which significantly altered the landscape of the summit region. Despite decades of focused scientific studies at Kīlauea, detailed information about the internal structure of the volcano is limited. Recently developed techniques in seismic interferometry can be used to monitor the internal structure of an active volcano more directly by detecting subtle spatiotemporal changes in seismic wave velocity, but their utility relies on accurate interpretations of the underlying phenomena causing those velocity changes. Here, we retrospectively apply repeating-earthquake-based seismic interferometry to the 2018 Kīlauea eruption sequence. We find that seismic velocities changed over two distinct time scales: a sudden increase followed by a slower decrease in velocity in the hours following each collapse event, and a gradual, long-term decrease in velocity over several weeks that ceased approximately 1 month prior to the end of the eruption. Modeling suggests that short-term changes can be explained by magma reservoir pressurization which specifically closed vertical ring fractures. Long-term changes are related to subsidence of the caldera and likely include the influence of inelastic strain from the formation of new fractures. These observations provide new insights into the evolution of Kīlauea during its progressive collapse and will inform future interpretations for near-real-time monitoring at hazardous volcanoes around the world using similar techniques, especially where a dominant fracture orientation is present.

Hawaii↗
USGS1996

Three-dimensional P and S wave velocity structure of Redoubt Volcano, Alaska

The three‐dimensional P and S wave structure of Redoubt Volcano, Alaska, and the underlying crust to depths of 7–8 km is determined from 6219 P wave and 4008 S wave first‐arrival times recorded by a 30‐station seismograph network deployed on and around the volcano. First‐arrival times are calculated using a finite‐difference technique, which allows for flexible parameterization of the slowness model and easy inclusion of topography and source‐receiver geometry. The three‐dimensional P wave velocity structure and hypocenters are determined simultaneously, while the three‐dimensional S wave velocity model is determined using the relocated seismicity and an initial S wave velocity model derived from the P wave velocity model assuming an average Vp / Vs ratio of 1.78. Convergence is steady with approximately 73% and 52% reduction in P and S wave arrival time RMS, respectively, after 10 iterations. The most prominent feature observed in the three‐dimensional velocity models derived for both P and S waves is a relative low‐velocity, near‐vertical, pipelike structure approximately 1 km in diameter that extends from 1 to 6 km beneath sea level. This feature aligns axially with the bulk of seismicity and is interpreted as a highly fractured and altered zone encompassing a magma conduit. The velocity structure beneath the north flank of the volcano between depths of 1 and 6 km is characterized by large lateral velocity variations. High velocities within this region are interpreted as remnant dikes and sills and low velocities as regions along which magma migrates. No large low‐velocity body suggestive of a magma chamber is resolved in the upper 7–8 km of the crust.

Journal of Geophysical Research B: Solid Earth↗
USGS2019

Historical land use and land cover for assessing the northern Colorado Front Range urban landscape

We describe historical land-use and land-cover (LULC) maps for the northern Colorado urban Front Range. The Front Range urban landscape is diverse and interspersed with highly productive agriculture as well as natural land cover types including evergreen forest in the Rocky Mountain foothills and Great Plains grassland. To understand the dynamics of urban growth, raster maps were created at a 1 meter resolution for each of four time steps, nominally 1937, 1957, 1977, and 1997. In total, 38 detailed LULC classes were identified using manual interpretation techniques, aerial photographs, historical maps, and other available information. The maps provide high resolution spatial data for understanding the historical progression of urbanization and will allow further analysis of the effects of urban growth on social and ecological systems.

Colorado↗
USGS2005

Length-weight relationship and a relative condition factor equation for lake sturgeon (Acipenser fulvescens) from the St Clair River system (Michigan, USA)

Several USA state, federal, and Canadian agencies study lake sturgeon (Acipenser fulvescens) within the St Clair River and Lake St Clair, collectively referred to hereafter as the St Clair River (SCR) system. Previously, there has been no set standard for determining condition for SCR system lake sturgeon. Condition measures the variation from the expected weight for length as an indicator of fatness, general well-being, gonad development, etc. The aim of this project was to determine the length weight relationship of lake sturgeon caught from the SCR system, from which a relative condition factor (Kn) equation could be derived. Total length (TL, mm) and weight (W, kg) were measured for 1074 lake sturgeon (101 males and 16 females were identifiable) collected by setline and bottom trawl from the SCR system in May-September, 1997-2002. Analysis of covariance found no difference in the length-weight relationship between sampling gear or sex. Least-squares regression of log10W ?? log10TL produced the overall equation logW = 3.365logTL - 9.320. Using the exponential form of the slope and y-intercept, relative condition factor for lake sturgeon from the SCR system can be calculated as Kn - W/[(4.786 ?? 10-10)(TL3.365)]. Equations for males and females were also developed. Overall, body condition was significantly correlated with both age and girth; no significant difference in Kn by sex was found. In general, the SCR lake sturgeon population was near the upper ends of growth and condition ranges listed in the literature, comparable with those populations that are at similar latitudes. Although condition factors should be interpreted with caution, proper use of a standard equation provides a non-lethal measure of overall fish health that can be used by biologists and managers in ongoing efforts to restore lake sturgeon throughout the Great Lakes. ?? 2005 Blackwell Verlag, Berlin.

Journal of Applied Ichthyology↗
USGS1987

Sedimentary processes on the northwestern Iberian continental margin viewed by long-range side-scan sonar and seismic data

The effects of an eastern boundary current in the North Atlantic have been mapped from about 39° north latitude along the Iberian margin to as far north as 43°30 north latitude at the western margin of Galicia Bank. The geostrophic current has produced sediment drifts that are covered with bedforms. The sediment drifts are difficult to detect on Gloria long-range side-scan sonar data but are easily resolved on seismic-reflection records as anomalously thick accumulations of sediment banked against either buried or outcropping basement highs. The bedforms ornamenting the drift surfaces were subdivided into 1,000-m water-depth intervals, and their dimensions were tabulated. There are few bedforms in water depths less han 2,000 m, but from depths between 2,000 and 4,000 m they are numerous and have a mean wavelength of 695 m. Bedforms from depths greater than 4,000 m have a mean wavelength of 999 m. The different wavelengths from different water depths suggest two distinct and separated boundary flows. The wave heights of all bedforms found in water depths greater than 2,000 m are less than 10 m. In order to investigate the continuity of sediment drifting through geological time, the stratigraphic section drilled at DSDP Site 398 was reinterpreted and, using seismic-reflection profiles, was traced throughout the northern Iberian margin. Together, the lithostratigraphic and seismic data indicate that sediment drifting developed along this margin in the Eocene. The lithofacies of the Eocene section is t e oldest to have numerous layers of sand and silt. An unconformity separates the Eocene section from the latest Miocene-Pliocene section. The unconformity is interpreted to be the result of the initial pulses of Mediterranean outflow that followed the Messinian desiccation events. A second period of sediment drifting commenced during the Pliocene once the Mediterranean basin filled and the flow out of the Strait of Gibraltar resumed.

Journal of Sedimentary Petrology↗
USGS2005

Evaluation of the landscape surrounding northern bobwhite nest sites: A multiscale analysis

Implementation of the Conservation Reserve Program (CRP) altered the interspersion and abundance of patches of different land-cover types in landscapes of the southeastern United States. Because northern bobwhites ( Colinus virginianus ) are experiencing significant population declines throughout most of their range, including the Southeast, it is critical to understand the impacts of landscape-scale changes in habitat on their reproductive rates. Our objective was to identify components of landscape structure important in predicting nest site selection by bobwhites at different spatial scales in the Upper Coastal Plain of Georgia. We used a Geographic Information System (GIS) and spatial analysis software to calculate metrics of landscape structure near bobwhite nest sites. Logistic regression was used to model the relationship of nest sites to structure within the surrounding landscape at 4 spatial scales. We found that patch density and open-canopy planted pine were consistently important predictor variables at multiple scales, and other variables were important at various scales. The density of different patch types could be increased by thinning rows of pines in large monotypic stands of closed-canopy planted pine stands. Thinning and creating openings in CRP pine plantations should provide increased nesting opportunities for bobwhites. We interpret the support for other variables in our analysis as an indication that various patch configuration lead to different combinations of landscape structure that provide an acceptable range of habitat conditions for bobwhites.

Journal of Wildlife Management↗
USGS1996

The developing framework of marine ecotoxicology: Pollutants as a variable in marine ecosystems?

Marine ecosystems include a subset in which at least some interrelated geochemical, biochemical, physiological, population and community characteristics are changed by pollutants. Moderate contamination is relatively widespread in coastal and estuarine ecosystems, so the subset of ecosystems with at least some processes affected could be relatively large. Pollutant influences have changed and will probably continue to change on time scales of decades. Biological exposures and dose in such ecosystems are species-specific and determined by how the species is exposed to different environmental media and the geochemistry of individual pollutants within those media. Bioaccumulation models offer significant promise for interpreting such exposures. Biological responses to pollutants need to be more directly linked to exposure and dose. At the level of the individual this might be improved by better understanding relationships between tissue concentrations of pollutants and responses to pollutants. Multi-discipline field and laboratory studies combined with advanced understanding of some basic processes have reduced the ambiguities in interpreting a few physiological/organismic responses to pollutants in nature. Recognition of pollutant-induced patterns in population responses could lead to similar advances. A rational framework for ecotoxicology is developing, but its further advance is dependent upon better integration of ecotoxicology with basic marine ecology and biology.

Journal of Experimental Marine Biology and Ecology↗
USGS2012

Pb, Sr, and Nd isotopes in seamount basalts from the Juan de Fuca Ridge and Kodiak-Bowie seamount chain, northeast Pacific

Pb, Sr, and Nd isotopic ratios and their parent/daughter element concentrations for 28 basalts from 10 hotspot and nonhotspot seamounts are reported. Nd and Sr isotopic compositions ( 143 Nd/ 144 Nd = 0.51325–0.51304; 87 Sr/ 86 Sr = 0.70237–0.70275) plot in the envelope for Juan de Fuca-Gorda ridge basalts with tholeiitic basalts showing more depleted sources and a better negative correlation than transitional to alkalic basalts. Pb isotopic ratios in tholeiitic and alkalic basalts overlap ( 206 Pb/ 204 Pb = 18.29–19.44) and display a trend toward more radiogenic Pb in alkalic basalts. The isotopic data for hotspot and nonhotspot basalts are indistinguishable and correlate broadly with rock composition, implying that they are controlled by partial melting. The isotopic variation in the seamount basalts is about 60% (Nd-Sr) to 100% (Pb) of that in East Pacific Rise basalts and is interpreted as a lower limit for the magnitude of mantle heterogeneity in the northeast Pacific. The data indicate absence of a chemically distinct plume component in the linear seamount chains and strongly suggest an origin from mid-ocean ridge basalt-like east Pacific mantle.

Journal of Geophysical Research Solid Earth↗
USGS2007

Effect of lipid extraction on analyses of stable carbon and stable nitrogen isotopes in coastal organisms of the Aleutian archipelago

We tested whether extracting lipids reduced confounding variation in ??13C and ??15N values by analyzing paired lipid-extracted (LE) and non-lipid-extracted (NLE) samples of bald eagle (Haliaeetus leucocephalus (L., 1766)) whole eggs, muscle tissue from nine seabird and one terrestrial bird species, muscle tissue from four marine fish species, and blue mussels (Mytilus edulis L., 1758) collected from the Aleutian archipelago, Alaska. Lipid extraction significantly increased ??13C by an average of 2.0??? in whole eggs, 0.8??? in avian muscle, 0.2??? in fish muscle, and 0.6??? in blue mussels. Lower ??13C values in NLE samples covaried positively with lipid content across all sample types. Lower ??13C values in NLE samples were not correlated with lipid content within bald eagle eggs and blue mussels, but covaried positively with percent lipid in avian and fish muscles. Neither lipid extraction nor percent lipid significantly changed ??15N values for any sample type. Lower ??13C values in most NLE avian and fish muscle tissues should not confound interpretation of pelagic versus nearshore sources of primary production, but lipid extraction may be necessary when highly precise estimates of ??13C are needed. Lipid extraction may not be necessary when only ??15N is of interest. ?? 2007 NRC.

Canadian Journal of Zoology↗
USGS2014

Genome complexity in the coelacanth is reflected in its adaptive immune system

We have analyzed the available genome and transcriptome resources from the coelacanth in order to characterize genes involved in adaptive immunity. Two highly distinctive IgW-encoding loci have been identified that exhibit a unique genomic organization, including a multiplicity of tandemly repeated constant region exons. The overall organization of the IgW loci precludes typical heavy chain class switching. A locus encoding IgM could not be identified either computationally or by using several different experimental strategies. Four distinct sets of genes encoding Ig light chains were identified. This includes a variant sigma-type Ig light chain previously identified only in cartilaginous fishes and which is now provisionally denoted sigma-2. Genes encoding α/β and γ/δ T-cell receptors, and CD3, CD4, and CD8 co-receptors also were characterized. Ig heavy chain variable region genes and TCR components are interspersed within the TCR α/δ locus; this organization previously was reported only in tetrapods and raises questions regarding evolution and functional cooption of genes encoding variable regions. The composition, organization and syntenic conservation of the major histocompatibility complex locus have been characterized. We also identified large numbers of genes encoding cytokines and their receptors, and other genes associated with adaptive immunity. In terms of sequence identity and organization, the adaptive immune genes of the coelacanth more closely resemble orthologous genes in tetrapods than those in teleost fishes, consistent with current phylogenomic interpretations. Overall, the work reported described herein highlights the complexity inherent in the coelacanth genome and provides a rich catalog of immune genes for future investigations.

Journal of Experimental Zoology Part B: Molecular ↗
USGS2007

Wave field features of shallow vertical discontinuity and their application in non-destructive detection

The geotechnical integrity of critical infrastructure can be seriously compromised by the presence of fractures or crevices. Non-destructive techniques to accurately detect fractures in critical infrastructure such as dams and highways could be of significant benefit to the geotechnical industry. This paper investigates the application of shallow seismic and georadar methods to the detection of a vertical discontinuity using numerical simulations. The objective is to address the kinematical analysis of a vertical discontinuity, determine the resulting wave field characteristics, and provide the basis for determining the existence of vertical discontinuities based on the recorded signals. Simulation results demonstrate that: (1) A reflection from a vertical discontinuity produces a hyperbolic feature on a seismic or georadar profile; (2) In order for a reflection from a vertical discontinuity to be produced, a reflecting horizon below the discontinuity must exist, the offset between source and receiver (x0) must be non-zero, on the same side of the vertical discontinuity; (3) The range of distances from the vertical discontinuity where a reflection event is observed is proportional to its length and to x0; (4) Should the vertical crevice (or fracture) pass through a reflecting horizon, dual hyperbolic features can be observed on the records, and this can be used as a determining factor that the vertical crevice passes through the interface; and (5) diffractions from the edges of the discontinuity can be recorded with relatively smaller amplitude than reflections and their ranges are not constrained by the length of discontinuity. If the length of discontinuity is short enough, diffractions are the dominant feature. Real-world examples show that the shallow seismic reflection method and the georadar method are capable of recording the hyperbolic feature, which can be interpreted as vertical discontinuity. Thus, these methods show some promise as effective non-destructive detection methods for locating vertical discontinuities (e.g., fractures or crevices) in infrastructure such as dams and highway pavement. ?? 2007 Elsevier B.V. All rights reserved.

Journal of Applied Geophysics↗
USGS2013

Vegetation impoverishment despite greening: a case study from central Senegal

Recent remote sensing studies have documented a greening trend in the semi-arid Sahel and Sudan zones of West Africa since the early 1980s, which challenges the mainstream paradigm of irreversible land degradation in this region. What the greening trend means on the ground, however, has not yet been explored. This research focuses on a region in central Senegal to examine changes in woody vegetation abundance and composition in selected sites by means of a botanical inventory of woody vegetation species, repeat photography, and perceptions of local land users. Despite the greening, an impoverishment of the woody vegetation cover was observed in the studied sites, indicated by an overall reduction in woody species richness, a loss of large trees, an increasing dominance of shrubs, and a shift towards more arid-tolerant, Sahelian species since 1983. Thus, interpretation of the satellite-derived greening trend as an improvement or recovery is not always justified. The case of central Senegal represents only one of several possible pathways of greening throughout the region, all of which result in similar satellite-derived greening signals.

Journal of Arid Environments↗