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USGS2000

Hazards to wildlife from soil-borne cadmium reconsidered

Cadmium is a toxic element that should be included in environmental risk assessments of contaminated soils. This paper argues, however, that hazards to wildlife from cadmium have often been overstated. The literature contains only meager evidence that wild animals have been seriously harmed by cadmium, even at severely contaminated sites. Although some researchers have reported that wildlife have accumulated concentrations of cadmium in their kidneys that were above suggested injury thresholds, the thresholds may be disputed, since they were well below the World Health Organization criterion of 200 mg/kg (wet weight) of cadmium in the renal cortex for protecting human health. Recent risk assessments have concluded that soil cadmium concentrations less than 1 mg/kg are toxic to soil organisms and wildlife, which implies that background concentrations of cadmium naturally found in soils are hazardous. An examination of the databases used to support these assessments suggested that the toxicity of cadmium has been exaggerated.

Journal of Environmental Quality↗

USGS2025

Chlorophyll trends are negative for lakes but positive for estuarine–coastal waters

Nutrient (nitrogen and phosphorus) pollution is an environmental problem of global concern because overenrichment of water bodies increases phytoplankton biomass and ecosystem metabolism, depletes oxygen in bottom waters, and increases the frequency and intensity of harmful algal blooms. These responses to nutrient pollution have motivated policies to reduce anthropogenic nutrient inputs. However, these policies have not been universally implemented and their success at reducing phytoplankton biomass is confounded by other components of global change that regulate the conversion of nutrients into biomass. These regulating processes themselves are changing in the Anthropocene. Our study is an assessment of changing phytoplankton biomass over the period 2000–2019, using chlorophyll a trends measured in 191 lakes and 159 estuarine-coastal sites. Our results show that phytoplankton biomass has decreased in most lakes, increased in most coastal sites, and the largest trends have been predominantly negative for lakes and positive for coastal sites. These results provide evidence of opposing directions of phytoplankton biomass change between lakes and coastal sites in this recent period of unprecedented global change. Nutrient pollution is a knotty environmental problem, and our study indicates that it might be a particularly challenging problem for ecosystems situated in densely populated landscapes where freshwater and sea water meet. Success at overcoming this challenge will require deeper scientific understanding of changes in processes that regulate the conversion of nutrients into phytoplankton biomass, substantial investments of time and resources to reduce nutrient inputs, and a flexible strategy designed to anticipate and adapt to a changing world.

PNAS↗

USGS2019

Brodifacoum toxicity in American Kestrels (Falco sparverius) with evidence of increased hazard upon subsequent anticoagulant rodenticide exposure

A seminal question in ecotoxicology is the extent to which contaminant exposure evokes prolonged effects on physiological function and fitness. A series of studies were undertaken with American kestrels ingesting environmentally realistic concentrations of the second-generation anticoagulant rodenticide (SGAR) brodifacoum (BROD). Kestrels fed BROD at 0.3, 1.0 or 3.0 µg/g diet wet wt for 7 d exhibited dose-dependent hemorrhage, histopathological lesions and coagulopathy (prolonged prothrombin and Russell’s viper venom times). Following termination of a 7 d exposure to 0.5 µg BROD/g diet, prolonged blood clotting time returned to baseline values within a week, but BROD residues in liver and kidney (terminal half-life estimates >50 d) persisted during the 28 d recovery period. In order to examine the hazard of sequential AR exposure, kestrels were exposed to either the firstgeneration AR chlorophacinone (CPN; 1.5 µg/g diet) or the SGAR BROD (0.5 µg/g diet) for 7 d, and following a recovery period, were challenged with a low dose of CPN (0.75 µg/g diet) for 7 d. In BROD-exposed kestrels, the challenge exposure clearly prolonged prothrombin time compared to naïve controls and kestrels previously exposed to CPN. These data provide evidence that the SGAR BROD may have prolonged effects that increase toxicity of subsequent AR exposure. As free-ranging predatory and scavenging wildlife are often repeatedly exposed to ARs, such protracted toxicological effects need to be considered in hazard and risk assessments.

Environmental Toxicology and Chemistry↗

USGS2005

Remote sensing for environmental site screening and watershed evaluation in Utah Mine lands: East Tintic mountains, Oquirrh mountains, and Tushar mountains

Imaging spectroscopy-a powerful remote-sensing tool for mapping subtle variations in the composition of minerals, vegetation, and man-made materials on the Earth's surface-was applied in support of environmental assessments and watershed evaluations in several mining districts in the State of Utah. Three areas were studied through the use of Landsat 7 ETM+ and Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data: (1) the Tintic mining district in the East Tintic Mountains southwest of Provo, (2) the Camp Floyd mining district (including the Mercur mine) and the Stockton (or Rush Valley) mining district in the Oquirrh Mountains south of the Great Salt Lake, and (3) the Tushar Mountains and Antelope Range near Marysvale. The Landsat 7 ETM+ data were used for initial site screening and the planning of AVIRIS surveys. The AVIRIS data were analyzed to create spectrally defined maps of surface minerals with special emphasis on locating and characterizing rocks and soils with acid-producing potential (APP) and acid-neutralizing potential (ANP). These maps were used by the United States Environmental Protection Agency (USEPA) for three primary purposes: (1) to identify unmined and anthropogenic sources of acid generation in the form of iron sulfide and (or) ferric iron sulfate-bearing minerals such as jarosite and copiapite; (2) to seek evidence for downstream or downwind movement of minerals associated with acid generation, mine waste, and (or) tailings from mines, mill sites, and zones of unmined hydrothermally altered rocks; and (3) to identify carbonate and other acid-buffering minerals that neutralize acidic, potentially metal bearing, solutions and thus mitigate potential environmental effects of acid generation. Calibrated AVIRIS surface-reflectance data were spectrally analyzed to identify and map selected surface materials. Two maps were produced from each flightline of AVIRIS data: a map of iron-bearing minerals and water having absorption features in the spectral region from 0.35 µ m to 1.35 µ m and a map of minerals (including clays, sulfates, micas, and carbonates) having absorptions in the spectral region from 1.45 µ m to 2.51 µ m. Several methods were used to verify the AVIRIS mapping results, including field checking of selected locations with a portable spectrometer, visual inspection of the AVIRIS reflectance spectra, and X-ray diffraction (XRD) analysis of field samples. The maps of iron-bearing minerals derived from analysis of the visible (VIS) and near-infrared (NIR) regions of the electromagnetic spectrum were shown to be more consistently reliable in indicating the presence of jarosite than were the maps generated from analysis of the short-wave infrared (SWIR) region. When present in abundance, phyllosilicate minerals tend to dominate the SWIR and mask the spectral features of jarosite in that wavelength region. The crystal field absorptions of jarosite in the VIS and NIR spectral regions will commonly be present regardless of whether the Fe-OH absorption feature near 2.27 µ m can be detected. For this reason, the VIS and NIR were preferable to the SWIR for the remote spectroscopic identification of jarosite (and other iron-bearing minerals). Large exposures of unmined hydrothermally altered rocks occur throughout the three study areas. These rocks commonly contain sulfide or sulfate minerals that produce sulfuric acid upon subaerial oxidation. The acid may be introduced into local surface and ground water and thus lower the baseline (that is, the premining) pH for a watershed.

Utah↗

USGS2008

Hydrologic connections and dynamics of water movement in the classical Karst (Kras) aquifer: Evidence from frequent chemical and stable isotope sampling

A review of past researchon the hydrogeology of the Classical Karst (Kras) region and new information obtained from a two-year study using environmental tracers are presented in this paper. The main problems addressed are 1) the sources of water to the Kras aquifer resurgence zone—including the famous Timavo springs—under changing flow regimes; 2) a quantification of the storage volumes of the karst massif corresponding to flow regimes defined by hydrographrecessions of the Timavo springs; and 3) changing dynamics between deep phreatic conduit flow and shallow phreatic and epiphreatic storage within the aquifer resurgence zone as determined throughchanges in chemical and isotopic composition at springs and wells. Particular focus was placed on addressing the long-standing question of the influence of the Soča River on the ground waters of the aquifer resurgence zone. The results indicate that the alluvial aquifer supplied by the sinking of the Soča River on the northwestern edge of the massif contributes approximately 75% of the mean annual outflow to the smaller springs of the aquifer resurgence zone, and as muchas 53% to the mean annual outflow of the Timavo springs. As a whole, the Soča River is estimated to contribute 56% of the average outflow of the Kras aquifer resurgence. The proportions of Soča River water increase under drier conditions, and decrease under wetter conditions. Time series analysis of oxygen stable isotope records indicate that the transit time of Soča River water to the Timavo springs, Sardos spring, and well B-4 is on the order of 1-2 months, depending on hydrological conditions. The total baseflow storage of the Timavo springs is estimated to be 518 million m3, and represents 88.5% of the storage capacity estimated for all flow regimes of the springs. The ratio of baseflow storage volume to the average annual volume discharged at the Timavo springs is 0.54. The Reka River sinking in Slovenia supplies substantial allogenic recharge to the aquifer; however, its influence on the northwest resurgence zone is limited to the Timavo springs, and is only a significant component of the spring discharge under flood conditions for relatively brief periods (several days to weeks). Sustainability of the trans-boundary aquifer of the Kras will benefit from maintaining highwater quality in the Soča River, as well as focused water tracing experiments within the epiphreatic zone of the aquifer to better delineate the recharge zone and to identify sources of potential contamination to the Brestovica water supply well.

Acta Carsologica↗

USGS1993

Effects of dietary aluminum, calcium, and phosphorus on egg and bone of European starlings

Egg and bone of passerine birds nesting in acidified habitats may be affected by high levels of Al or P, or low levels of Ca. Nine treatments of three levels of dietary Al (target levels of 200, 1,000, and 5,000 μg/g) and three levels of Ca:P (target levels of NN = 1.3% Ca: 0.9% P; LL = 0.19 Ca:0.45 P; LH = 0.19 Ca: 1.65 P) were fed to 16–17 starling pairs during two breeding seasons. Eggs of starlings fed the LH diet were smaller and weighed less than eggs from the NN and LL treatments. Treatment effects on thickness, strength, and weight of eggshells were not consistent between seasons, probably because of differences in actual dietary levels of Al, Ca, and P or in incubation intervals. In one season, birds fed the highest Al diet had thicker eggshells than those from the other Al treatments (no effect from Ca:P); the following season, eggshells from the NN and LH treatments were thicker and stronger than those from the LL treatment. Eggshells from the NN treatment weighed more than those from the other Ca:P treatments. Starlings on the LH diet had the strongest femurs, but the effect was interactive with different levels of dietary Al. Effects of Ca:P on egg and bone were more evident than Al effects.

Archives of Environmental Contamination and Toxico↗

USGS2008

Anatomy of a bottleneck: diagnosing factors limiting population growth in the Puerto Rican parrot

The relative importance of genetic, demographic, environmental, and catastrophic processes that maintain population bottlenecks has received little consideration. We evaluate the role of these factors in maintaining the Puerto Rican Parrot (Amazona vittata) in a prolonged bottleneck from 1973 through 2000 despite intensive conservation efforts. We first conduct a risk analysis, then examine evidence for the importance of specific processes maintaining the bottleneck using the multiple competing hypotheses approach, and finally integrate these results through a sensitivity analysis of a demographic model using life-stage simulation analysis (LSA) to determine the relative importance of genetic, demographic, environmental, and catastrophic processes on population growth. Annual population growth has been slow and variable (1.0 6 5.2 parrots per year, or an average k?1.05 6 0.19) from 16 parrots (1973) to a high of 40-42 birds (1997-1998). A risk analysis based on population prediction intervals (PPI) indicates great risk and large uncertainty, with a range of 22?83 birds in the 90% PPI only five years into the future. Four primary factors (reduced hatching success due to inbreeding, failure of adults to nest, nest failure due to nongenetic causes, and reduced survival of adults and juveniles) were responsible for maintaining the bottleneck. Egghatchability rates were low (70.6% per egg and 76.8% per pair), and hatchability increased after mate changes, suggesting inbreeding effects. Only an average of 34% of the population nested annually, which was well below the percentage of adults that should have reached an age of first breeding (41-56%). This chronic failure to nest appears to have been caused primarily by environmental and/or behavioral factors, and not by nest-site scarcity or a skewed sex ratio. Nest failure rates from nongenetic causes (i.e., predation, parasitism, and wet cavities) were low (29%) due to active management (protecting nests and fostering captive young into wild nests), diminishing the importance of nest failure as a limiting factor. Annual survival has been periodically reduced by catastrophes (hurricanes), which have greatly constrained population growth, but survival rates were high under non-catastrophic conditions. Although the importance of factors maintaining the Puerto Rican Parrot bottleneck varied throughout the 30-year period of study, we determined their long-term influence using LSA simulations to correlate variation in demographic rates with variation in population growth (k). The bottleneck appears to have been maintained primarily by periodic catastrophes (hurricanes) that reduced adult survival, and secondarily by environmental and/or behavioral factors that resulted in a failure of many adults to nest. The influence of inbreeding through reduced hatching success played a much less significant role, even when additional effects of inbreeding on the production and mortality of young were incorporated into the LSA. Management actions needed to speed recovery include (1) continued nest guarding to minimize the effects of nest failure due to nongenetic causes; (2) creating a second population at another location on the island --a process that was recently initiated--to reduce the chance that hurricane strikes will cause extinction; and (3) determining the causes of the low percentage of breeders in the population and ameliorating them, which would have a large impact on population growth.

Ecological Monographs↗

USGS2006

Visitor evaluations of management actions at a highly impacted Appalachian Trail camping area

Protected area management involves balancing environmental and social objectives. This is particularly difficult at high-use/high-impact recreation sites, because resource protection objectives may require substantial site management or visitor regulation. This study examined visitors? reactions to both of these types of actions at Annapolis Rocks, Maryland, a popular Appalachian Trail camping area. We surveyed visitors before and after implementation of camping policies that included shifting camping to designated newly constructed campsites and prohibiting campfires. Survey results reveal that visitors were more satisfied with all social and environmental indicators after the changes were enacted. An Importance-Performance analysis also determined that management actions improved conditions for factors of greatest concern to campers prior to the changes. Posttreatment visitors were least satisfied with factors related to reduced freedom and to some characteristics of the constructed campsites. Although there was evidence of visitor displacement, the camping changes met management goals by protecting the camping area?s natural resources and improving social conditions.

Environmental Management↗

USGS2015

Influences of supplemental feeding on winter elk calf:cow ratios in the southern Greater Yellowstone Ecosystem

Several elk herds in the Greater Yellowstone Ecosystem are fed during winter to alleviate interactions with livestock, reduce damage to stored crops, and to manage for high elk numbers. The effects of supplemental feeding on ungulate population dynamics has rarely been examined, despite the fact that supplemental feeding is partially justified as necessary for maintaining or enhancing population growth rates. We used linear regression to assess how the presence of feedgrounds, snowpack, summer rainfall, indices of grizzly bear density and wolves per elk, elk population trend counts, brucellosis seroprevalence, and survey date were correlated with midwinter calf:cow ratios, a metric correlated with population growth, from 1983–2010 from 12 ecologically similar elk herd units (7 fed and 5 unfed) in Wyoming, USA. Our statistical approach allowed for rigorous tests of the hypotheses that supplemental feeding had positive effects on calf:cow ratios and reduced sensitivity of calf:cow ratios to bottom-up limitation relative to top-down limitation from native predators. Calf:cow ratios generally declined across all herd units over the study period and varied widely among units with feedgrounds. We found no evidence that the presence of feedgrounds had positive effects on midwinter calf:cow ratios in Wyoming. Further, fed elk showed stronger correlations with environmental factors, whereas calf:cow ratios for unfed elk showed stronger correlations with predator indices. Although we found no consistent association between winter feeding and higher calf:cow ratios, we did not assess late winter mortality and differences in human offtake between fed and unfed regions, which remain a priority for future research.

Wyoming↗

USGS2021

Long-term variation in polar bear body condition and maternal investment relative to a changing environment

In the Arctic, warming air and ocean temperatures have resulted in substantial changes to sea ice, which is primary habitat for polar bears ( Ursus maritimus ). Reductions in extent, duration, and thickness have altered sea ice dynamics, which influences the ability of polar bears to reliably access marine mammal prey. Because nutritional condition is closely linked to population vital rates, a progressive decline in access to prey or an increase in the energetic cost of accessing prey has the potential to adversely affect polar bear population dynamics. We examined long-term (1983–2015) patterns of spring body condition (indexed using residual body mass) and maternal investment (i.e., litter mass of cubs-of-the-year and yearlings; COY and YRL) of polar bears from Alaska’s southern Beaufort Sea to evaluate potential relationships with regional- and circumpolar-scale sea ice conditions and atmospheric patterns. The length of the summer open-water (OW) season (i.e., the period of time the sea ice is mostly absent from the continental shelf) increased at a rate of 18 days decade -1 over the study period. However, the OW season duration was not a strong determinant of spring residual body mass or litter mass. Residual body mass of independent (i.e., subadults and adults) female bears varied relative to age class, reproductive status, and the strength of the prior winter’s Arctic Oscillation (i.e., a circumpolar-scale mode of climate variability driven by long-term atmospheric patterns). Spring residual mass of independent males varied with age class and variation in wind speed (i.e., regional-scale short-term atmospheric patterns) during the winter of the year preceding capture. Over the study period, mean annual body mass of adult females unaccompanied by COY declined by 4 kg/ decade -1 , while no temporal trends were evident in the mean annual body mass of adult females with COY, adult males, and subadults. Litter mass of COY varied relative to capture date, maternal age class and mass, litter size, and year of capture. Litter mass of YRL varied with capture date, maternal age class and mass, litter size, variation in winter wind speed (the year of and year preceding capture), and the strength of the prior winter’s Arctic Oscillation. Mean annual litter mass of COY decreased at a rate of 2.6 kg decade -1 and declined 0.68 kg for every 10 kg reduction in maternal mass. No trend was evident in the mean annual litter mass of yearlings. These findings suggest a nuanced response of the southern Beaufort Sea polar bears to environmental change, where some demographic groups (e.g., adult males and subadults) are presently more resilient than others to changes in the Arctic marine ecosystem.

Alaska↗

USGS2025

Comparative genomics of Bacillus anthracis A and B-clades reveals genetic variation in genes responsible for spore germination

Bacillus anthracis , the causative agent of anthrax, is composed of three genetic clades (A, B, and C). Clade-A is the most common and distributed worldwide, B-clade has a narrow geographic distribution, and C-clade is rare. South Africa's Kruger National Park (KNP) has high diversity of B. anthracis , with strains from A and B clades described from its northernmost region, Pafuri. We employed whole genome sequencing to investigate the genomic diversity of B. anthracis strains isolated from animal carcasses ( n = 34) during the 2012–2015 outbreaks. Whole-genome single-nucleotide polymorphism (wgSNP) analysis assigned the 2012–2015 B. anthracis genomes to the A-clade branch, distributed across the branch's two minor sub-clades A.Br.005/006. Additionally, pan-genomic analysis distinguished the A- and B-clade genomes, identifying unique accessory genes. Notable genetic differences include the biosynthetic spore cell wall genes; long-chain fatty acid CoA ligases ( FaD13 ), Bacillus collagen-like protein of anthracis (BclA) involved in the exosporium germination, as well as a truncated murein DD-endopeptidase ( mepH ) found in the pXO2 plasmid of the B-clade strains. The tryptophan synthase subunit alpha gene ( trpA ), which results in a pseudogene in B-clade genomes separates the A- and B-clade genomes. These differences in biosynthetic cell wall genes suggest variation in adaptability or cell growth of the B-clade strains in the environment, further influenced by the truncation of the trpA gene involved in spore germination. The A.Br.005/006-clade strains in KNP exhibit higher genetic diversity, which may enhance their resilience to environmental stressors. In contrast, the KNP B-clade (B.Br.001/002) strains show limited genetic variation, potentially reducing their adaptability. This pattern is evident through whole-genome SNP analysis and pan-genomics investigating the evolution of B. anthracis .

Kruger National Park↗

USGS2023

Parallel shifts in trout feeding morphology suggest rapid adaptation to alpine lake environments

Eco-evolutionary interactions following ecosystem change provide critical insight into the ability of organisms to adapt to shifting resource landscapes. Here we explore evidence for the rapid parallel evolution of trout feeding morphology following eco-evolutionary interactions with zooplankton in alpine lakes stocked at different points in time in the Wind River Range (Wyoming, USA). In this system, trout predation has altered the zooplankton species community and driven a decrease in average zooplankton size. In some lakes that were stocked decades ago, we find shifts in gill raker traits consistent with the hypothesis that trout have rapidly adapted to exploit available smaller-bodied zooplankton more effectively. We explore this morphological response in multiple lake populations across two species of trout (cutthroat trout, Oncorhynchus clarkii , and golden trout Oncorhynchus aguabonita ) and examine the impact of resource availability on morphological variation in gill raker number among lakes. Furthermore, we present genetic data to provide evidence that historically stocked cutthroat trout populations likely derive from multiple population sources, and incorporate variation from genomic relatedness in our exploration of environmental predictors of feeding morphology. These findings describe rapid adaptation and eco-evolutionary interactions in trout and document an evolutionary response to novel, contemporary ecosystem change.

Evolution↗

USGS2022

Using landscape genomics to delineate future adaptive potential for climate change in the Yosemite toad (Anaxyrus canorus)

An essential goal in conservation biology is delineating population units that maximize the probability of species persisting into the future and adapting to future environmental change. However, future-facing conservation concerns are often addressed using retrospective patterns that could be irrelevant. We recommend a novel landscape genomics framework for delineating future “Geminate Evolutionary Units” (GEUs) in a focal species: (1) identify loci under environmental selection, (2) model and map adaptive conservation units that may spawn future lineages, (3) forecast relative selection pressures on each future lineage, and (4) estimate their fitness and likelihood of persistence using geo-genomic simulations. Using this process, we delineated conservation units for the Yosemite toad ( Anaxyrus canorus ), a U.S. federally threatened species that is highly vulnerable to climate change. We used a genome-wide dataset, redundancy analysis, and Bayesian association methods to identify 24 candidate loci responding to climatic selection ( R 2 ranging from 0.09 to 0.52), after controlling for demographic structure. Candidate loci included genes such as MAP3K5, involved in cellular response to environmental change. We then forecasted future genomic response to climate change using the multivariate machine learning algorithm Gradient Forests. Based on all available evidence, we found three GEUs in Yosemite National Park, reflecting contrasting adaptive optima: YF-North (high winter snowpack with moderate summer rainfall), YF-East (low to moderate snowpack with high summer rainfall), and YF-Low-Elevation (low snowpack and rainfall). Simulations under the RCP 8.5 climate change scenario suggest that the species will decline by 29% over 90 years, but the highly diverse YF-East lineage will be least impacted for two reasons: (1) geographically it will be sheltered from the largest climatic selection pressures, and (2) its standing genetic diversity will promote a faster adaptive response. Our approach provides a comprehensive strategy for protecting imperiled non-model species with genomic data alone and has wide applicability to other declining species.

California↗

USGS2012

Fluid geochemistry of Yucca Mountain and vicinity

Yucca Mountain, a site in southwest Nevada, has been proposed for a deep underground radioactive waste repository. An extensive database of geochemical and isotopic characteristics has been established for pore waters and gases from the unsaturated zone, perched water, and saturated zone waters in the Yucca Mountain area. The development of this database has been driven by diverse needs of the Yucca Mountain Project, especially those aspects of the project involving process modeling and performance assessment. Water and gas chemistries influence the sorption behavior of radionuclides and the solubility of the radionuclide compounds that form. The chemistry of waters that may infiltrate the proposed repository will be determined in part by that of water present in the unsaturated zone above the proposed repository horizon, whereas pore-water compositions beneath the repository horizon will influence the sorption behavior of the radionuclides transported toward the water table. However, more relevant to the discussion in this chapter, development and testing of conceptual flow and transport models for the Yucca Mountain hydrologic system are strengthened through the incorporation of natural environmental tracer data into the process. Chemical and isotopic data are used to establish bounds on key hydrologic parameters and to provide corroborative evidence for model assumptions and predictions. Examples of specific issues addressed by these data include spatial and temporal variability in net fluxes, the role of faults in controlling flow paths, fracture-matrix interactions, the age and origin of perched water, and the distribution of water traveltimes.

Nevada↗

USGS2013

Monitoring to assess progress toward meeting the total maximum daily load for phosphorus in the Assabet River, Massachusetts: phosphorus loads, 2008 through 2010

Wastewater discharges to the Assabet River contribute substantial amounts of phosphorus, which support accumulations of nuisance aquatic plants that are most evident in the river’s impounded reaches during the growing season. To restore the Assabet River’s water quality and aesthetics, the U.S. Environmental Protection Agency required the major wastewater-treatment plants in the drainage basin to reduce the amount of phosphorus discharged to the river by 2012. From October 2008 to December 2010, the U.S. Geological Survey, in cooperation with the Massachusetts Department of Environmental Protection and in support of the requirements of the Total Maximum Daily Load for Phosphorus, collected weekly flow-proportional, composite samples for analysis of concentrations of total phosphorus and orthophosphorus upstream and downstream from each of the Assabet River’s two largest impoundments: Hudson and Ben Smith. The purpose of this monitoring effort was to evaluate conditions in the river before enhanced treatment-plant technologies had effected reductions in phosphorus loads, thereby defining baseline conditions for comparison with conditions following the mandated load reductions. The locations of sampling sites with respect to the impoundments enabled examination of the impoundments’ effects on phosphorus sequestration and on the transformation of phosphorus between particulate and dissolved forms. The study evaluated the differences between loads upstream and downstream from the impoundments throughout the sampling period and compared differences during two seasonal periods of relevance to aquatic plants: April 1 through October 31, the growing season, and November 1 through March 31, the nongrowing season, when existing permit limits allowed average monthly wastewater-treatment-plant-effluent concentrations of 0.75 milligram per liter (growing season) or 1.0 milligram per liter (nongrowing season) for total phosphorus. At the four sampling sites during the growing season, median weekly total phosphorus loads ranged from 110 to 190 kilograms (kg) and median weekly orthophosphorus loads ranged from 17 to 41 kg. During the nongrowing season, median weekly total phosphorus loads ranged from 240 to 280 kg and median weekly orthophosphorus loads ranged from 56 to 66 kg. During periods of low and moderate streamflow, estimated loads of total phosphorus upstream from the Hudson impoundment generally exceeded those downstream during the same sampling periods throughout the study; orthophosphorus loads downstream from the impoundment were typically larger than those upstream. When storm runoff substantially increased the streamflow, loads of total phosphorus and orthophosphorus both tended to be larger downstream than upstream. At the Ben Smith impoundment, both total phosphorus and orthophosphorus loads were generally larger downstream than upstream during low and moderate streamflow, but the differences were not as pronounced as they were at the Hudson impoundment. High flows were also associated with substantially larger total phosphorus and orthophosphorus loads downstream than those entering the impoundment from upstream. In comparing periods of growing- and nongrowing-season loads, the same patterns of loads entering and leaving were observed at both impoundments. That is, at the Hudson impoundment, total phosphorus loads entering the impoundment were greater than those leaving it, and orthophosphorus loads leaving the impoundment were greater than those entering it. At the Ben Smith impoundment, both total phosphorus and orthophosphorus loads leaving the impoundment were greater than those entering it. However, the loads were greater during the nongrowing seasons than during the growing seasons, and the net differences between upstream and downstream loads were about the same. The results indicate that some of the particulate fraction of the total phosphorus loads is sequestered in the Hudson impoundment, where particulate phosphorus probably undergoes some physical and biogeochemical transformations to the dissolved form orthophosphorus. The orthophosphorus may be taken up by aquatic plants or transported out of the impoundments. The results for the Ben Smith impoundment are less clear and suggest net export of total phosphorus and orthophosphorus. Differences between results from the two impoundments may be attributable in part to differences in their sizes, morphology, unmonitored tributaries, riparian land use, and processes within the impoundments that have not been quantified for this study.

Massachusetts↗

USGS2010

Evidence of envronmental change in Rankin basin, Central Florida Bay, Everglades National Park

Analyses of core GLBW601 RL1 collected in Rankin Basin, Florida Bay, Everglades National Park, in June 2001 indicate that significant environmental changes occurred at the site over the last two centuries. The core was collected at a site of documented seagrass die-off in 1987-1988. The purpose of this study was to document the long-term sequences of events leading up to the die-off event. Analyses have been conducted to examine (1) faunal changes in the ostracodes and mollusks, (2) biochemistry of the ostracode shells, (3) floral changes in the pollen assemblages, and (4) geochemical and elemental changes in the sediment. The faunal assemblage analyses provide information on the salinity and benthic habitat at the site. The biochemical and geochemical data provide information about the water chemistry and sedimentation rates. The floral assemblage provides data about the nearby terrestrial environment and the first occurrence of pollen of the Australian pine, Casuarina equisetifolia , serves as a biostratigraphic marker for the beginning of the 20th century. These data provide clues to the cause and effect of the seagrass die-off and changes in salinity patterns and also illustrate decadal-scale patterns of change. The analyses of GLBW601 RL1 show two important results. First, prior to 1900, Rankin Basin tended to be oligohaline to mesohaline on the basis of faunal data showing the assemblage to be similar to that of the lowest portions of a core from Taylor Creek. Second, prior to the documented seagrass die-off, the faunal assemblages indicate an increase in the amplitude of salinity fluctuations; a significant increase occurs in the mollusks Brachidontes exustus and Anomalocardia auberiana , two species that tolerate fluctuations in salinity.

Florida↗

USGS2019

A 50-year Sr/Ca time series from an enclosed, shallow-water Guam coral: In situ monitoring and extraction of a temperature trend, annual cycle, and ENSO and PDO signals

Located on the northern edge of the West Pacific Warm Pool and having a developed economy and modern infrastructure, Guam is well positioned and equipped for obtaining natural records of the west Pacific maritime paleoclimate. This study was a proof of concept to explore whether useful climate proxy records might be obtained from coral at readily accessible, even if geochemically nonoptimal, coastal sites. A 50-year Sr/Ca record (1960–2010) was thus obtained from a shallow-water, near-shore Porites lutea colony at a recreational facility inside Guam's Apra Harbor and compared with local and regional meteorological records, including the El Niño–Southern Oscillation (ENSO) and Pacific Decadal Oscillation (PDO) indices. The accessibility of the site enabled documentation of relevant environmental variables for 16 months (September 2009–December 2010): seawater δ 18 O, pH, seawater cations, and nitrate. Time series of seawater δ 18 O, pH, and cations show evidence of freshwater input from direct rainfall and stream discharge into the harbor. An anomalously higher mean and variable concentrations of Ba suggest the presence of river-borne, fine-grained terrigenous sediment. Nevertheless, the Sr/Ca time series reproduces a long-term warming trend seen in historical records of local air temperature and regional sea-surface temperature (SST) and closely tracks the ENSO and PDO indices over the entire 50-year record. The consistency of the results with Guam's historical instrumental records, previous coral δ 18 O results from Guam obtained by others, and previous Sr/Ca proxy results for SST in similar environments elsewhere demonstrate that accessible near-shore sites—where environmental conditions can be monitored—can produce useful Sr/Ca records of local and regional climate phenomena.

Journal of Coastal Research↗

USGS2024

Infectivity of wild-bird origin Influenza A viruses in Minnesota wetlands across seasons

The environmental tenacity of influenza A viruses (IAVs) in the environment likely plays a role in their transmission; IAVs are able to remain infectious in aquatic habitats and may have the capacity to seed outbreaks when susceptible wild bird hosts utilize these same environments months or even seasons later. Here, we aimed to assess the persistence of low-pathogenicity IAVs from naturally infected ducks in Northwestern Minnesota through a field experiment. Viral infectivity was measured using replicate samples maintained in distilled water in a laboratory setting as well as in filtered water from four natural water bodies maintained in steel perforated drums (hereafter, mesocosms) within the field from autumn 2020 to spring 2021. There was limited evidence for the extended persistence of IAVs held in mesocosms; from 65 initial IAV-positive samples, only six IAVs persisted to at least 202 days in the mesocosms compared to 17 viruses persisting at least this long when held under temperature-controlled laboratory settings in distilled water. When accounting for the initial titer of samples, viruses detected at a higher concentration at the initiation of the experiment persisted longer than those with a lower starting titer. A parallel experimental laboratory model was used to further explore the effects of water type on viral persistence, and the results supported the finding of reduced tenacity of IAVs held in mesocosms compared to distilled water. The results of this investigation provide evidence that many factors, including temperature and physicochemical properties, impact the duration of viral infectivity in natural settings, further extending our understanding of the potential and limitations of environmental-based methodologies to recover infectious IAVs.

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