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Extrinsic factors similarly affect nest survival of a threatened shorebird in natural and human-created habitats

Knowledge of factors that influence nest survival can inform effective conservation management for imperiled avian species. Habitat availability and quality are common priorities of conservation efforts, and climate and interspecific associations can also affect survival rates. In the lower Platte River system of eastern Nebraska, USA, Piping Plovers ( Charadrius melodus , hereafter plovers) nest on river sandbars and different types of human-created off-river sites (i.e., sand and gravel mines, housing developments, and transitional sites) that are unique within the Northern Great Plains breeding population. However, off-river habitat may not be suitable for plover nesting long-term because of reduced habitat availability on both river sandbars and off-river sites. We evaluated plover nest survival at off-river and sandbar sites using data from 2008 to 2023 (n = 285). In addition, we examined the effects of extreme temperatures, proximity to conspecific and Interior Least Tern ( Sternula antillarum athalassos , hereafter tern) nests, and temporal factors on nest survival. Plover nest survival did not differ between off-river sites and sandbars or amongst different off-river site types. Daily nest survival was 0.9818 (95% CI = 0.9729–0.9878) from 2008 to 2013 (unexclosed; n = 87) and 0.9950 (0.9918–0.9970) from 2014 to 2023 (exclosed; n = 198). Nest survival increased with the proportion of above average temperature days, increased with proximity to neighboring tern nests, and decreased with later nest initiation dates. Therefore, prioritizing early season nests, recognizing the benefits terns provide to plover nest survival, and monitoring the effect of climatic trends may aid future conservation efforts. Finally, as nest survival at off-river sites is comparable to sandbars, the predicted decline of habitat provided at off-river sites may reduce the overall breeding productivity and abundance of plovers in the lower Platte River system with ramifications to broader population viability.

Nebraska

Floods in southwest-central Florida from hurricane Frances, September 2004

Hurricane Frances brought heavy rainfall and widespread flooding to southwest-central Florida September 4-14, 2004. The center of Hurricane Frances made landfall on the east coast of Florida on September 5 as a category 2 hurricane on the Saffir-Simpson scale, then moved west-northwestward through central Florida before exiting Pasco County into the Gulf of Mexico on September 6 (fig. 1; National Weather Service, 2004). The hurricane moved across the Florida Peninsula generating 5 to 11 inches of rain over already saturated ground (table 1). Record flooding occurred in parts of Hardee, Hillsborough, Pasco, and Polk Counties (fig. 1). The hurricane and resulting floods caused an estimated $4-5 billion in damage to public and private property (Harrington, 2004), and 23 deaths were attributed to Hurricane Frances (National Weather Service, 2004). Several watersheds drain counties in southwest-central Florida that were affected by Hurricane Frances. De Soto, Hardee, and Polk Counties generally are drained by the Peace River system, which flows southwestward to Charlotte Harbor and the Gulf of Mexico. Hillsborough and Pasco Counties generally are drained by the Alafia, Hillsborough, Anclote, and Pithlachascotee River systems. Water in the Hillsborough and Alafia River watersheds flows west to Tampa Bay and water in the Anclote and Pithlachascotee River watersheds flows west to the Gulf of Mexico. (fig. 1, http://water.usgs.gov/pubs/fs/2005/3028/#fig1).

Fact Sheet

Water-quality assessment of the Great Salt Lake basins, Utah, Idaho, and Wyoming: Environmental setting and study design

The Great Salt Lake Basins, Utah, Idaho, and Wyoming is one of 51 study units in the United States where the status and trends of water quality, and the factors controlling water quality, are being studied by the National Water-Quality Assessment Program of the U.S. Geological Survey. The 14,500-square-mile Great Salt Lake Basins study unit encompasses three major river systems that enter Great Salt Lake: the Bear, the Weber, and the Utah Lake/Jordan River systems. The environmental setting of the study unit includes natural and human-related factors that potentially influence the physical, chemical, and/or biological quality of the surface- and ground-water resources. Surface- and ground-water components of the planned assessment activities are designed to evaluate the sources of natural and human-related factors that affect the water quality in the Great Salt Lake Basins study unit.

Idaho, Utah, Wyoming

Least tern and piping plover nesting at sand pits in Nebraska

Endangered Least Terns (Sterna antillarum) and threatened Piping Plovers (Charadrius melodus) nest at commercial sand and gravel mining operations (sand pits) along the Platte River system in Nebraska. Sandbar habitat has been disappearing since the early 1900's along the Platte River system, but numbers of sand pits have increased. We hypothesized that birds would more fully utilize sand pits where suitable sandbar habitat was limited. We inventoried sand pits and censused terns and plovers on both habitats along the Loup River, part of the North Loup River, and most of the Platte River during 1988-1991. Using aircraft, we also quantified features of suitable sand pits present on the central Platte in 1988 and lower Platte in 1990, and related features to abundance and presence of birds. We found 225 sand pits of which 78 were suitable and 187 were unsuitable for nesting. Along the central Platte, where sandbar habitat is severely degraded, birds nested at 81% of the suitable sand pits (N = 32) at least once during 1988-1991, and most birds (61-94%) nested on sand pits. Along the lower Platte, where both sandbar and sand pit habitat are plentiful, birds nested at 60% of the suitable sand pits (N = 35) at least once during 1988-1991, and most birds (60-86%) nested on sandbars. Numbers of terns and plovers were more weakly correlated with features of sand pits on the central Platte than on the lower Platte. Least Terns and Piping Plovers seem to use more of the suitable sand pit habitat on the central Platte than on the lower Platte. Sand pits probably have influenced the birds' distribution by providing alternative nesting habitat along rivers where suitable sandbars are rare or absent.

Nebraska

Conceptual and numerical models of dissolved solids in the Colorado River, Hoover Dam to Imperial Dam, and Parker Dam to Imperial Dam, Arizona, California, and Nevada

Conceptual and numerical models were developed to understand and simulate monthly flow-weighted dissolved-solids concentrations in the Colorado River at Imperial Dam. The ability to simulate dissolved-solids concentrations at this location will help the Bureau of Reclamation satisfy the binational agreement on the volume and salinity of Colorado River water delivered to Mexico. A robust spatial- and temporal-resolution dataset that consists of river discharge and dissolved-solids concentration and load information between January 1990 and September 2016 for 10 sites on canals, drains, tributaries, and the main stem of the Colorado River between Hoover and Imperial Dams was generated. Daily mean dissolved-solids concentrations were estimated and monthly mean dissolved-solids loads were computed for each site. Spatial and temporal load patterns, and historical and current controls on loads and concentrations, were analyzed in order to develop a conceptual model of dissolved-solids transport between Hoover and Imperial Dams. Two numerical models describing the relations between dissolved-solids concentrations and components controlling dissolved-solids concentrations and loads were developed, calibrated, and verified. Between January 1990 and September 2016, there was a 98.8-million-acre-feet loss of water and a 57.0-million-ton loss of dissolved-solids load from the Colorado River between Hoover and Imperial Dams. Between Hoover and Parker Dams, about 69.0 million acre-feet of water was lost and 51.1 million tons of dissolved solids were lost; between Parker and Imperial Dams, about 29.8 million acre-feet of water was lost and 5.9 million tons of dissolved solids were lost. Water was removed from the river at a relatively consistent rate over the 25-year study period through water transfers to California and Arizona, evapotranspiration from crop irrigation, transpiration processes of riparian vegetation, and evaporation from the river main stem. Dissolved solids were removed from the river between Hoover and Parker Dams at a relatively constant rate through water transfers to California and Arizona, and water pumped from the river for irrigation within the Mohave Valley. A small amount of dissolved solids are gained by the river from inflow from the Bill Williams River. Between Parker and Imperial Dams, however, dissolved solids were not removed from the river at a consistent rate over the study period. Dissolved solids were generally removed from the river from 1990 to 2012, then gained by the river from 2012 to 2015, and then removed from the river from 2015 through 2016. Dissolved solids are assumed to be removed from the river and accumulated within the floodplain sediments and aquifers during irrigation processes; some dissolved solids may also be removed from the river through uptake by crops and riparian vegetation. Dissolved solids accumulated on the landscape and in the floodplain aquifer during irrigation are transported to the river during periods when the hydraulic gradient between the floodplain aquifer and the river is increased, causing a gain in dissolved solids in the river. Dissolved-solids gains in the river occur during periods of relatively low river discharge, such as during the winter months and during drier climatic conditions. Two numerical models were developed and coefficients were estimated by using data from a May 2008-September 2016 calibration period. One model simulates concentrations at Imperial Dam based on the Colorado River system downstream from Parker Dam, and the other model simulates concentrations at Imperial Dam based on the Colorado River system downstream from Hoover Dam. Both models simulated monthly flow-weighted concentrations of dissolved solids for the Colorado River at Imperial Dam, which corresponded well with observed concentrations for the entire study period. The models are more sensitive to input variables of monthly discharge of the Colorado River below Parker Dam and monthly flow-weighted dissolved-solids concentrations of the Colorado River below Hoover Dam and Parker Dam than to the rate of change in concentration with respect to time and the combined discharge of the Colorado River Indian Reservation Main Canal and the Palo Verde Canal. The calibrated models can be used to run scenarios of future monthly flow-weighted dissolved-solids concentrations in the Colorado River at Imperial Dam. Although the models are expected to provide concentration estimates within 18 milligrams per liter (Parker Dam to Imperial Dam model) to 22 milligrams per liter (Hoover Dam to Imperial Dam model), 95 percent of the time, the error of future scenarios increases as uncertainty in the estimated future input variables increases.

Arizona, California, Nevada

Impacts of the Columbia River hydroelectric system on main-stem habitats of fall chinook salmon

Salmonid habitats in main-stem reaches of the Columbia and Snake rivers have changed dramatically during the past 60 years because of hydroelectric development and operation. Only about 13% and 58% of riverine habitats in the Columbia and Snake rivers, respectively, remain. Most riverine habitat is found in the upper Snake River; however, it is upstream of Hells Canyon Dam and not accessible to anadromous salmonids. We determined that approximately 661 and 805 km of the Columbia and Snake rivers, respectively, were once used by fall chinook salmon Oncorhynchus tshawytscha for spawning. Fall chinook salmon currently use only about 85 km of the main-stem Columbia River and 163 km of the main-stem Snake River for spawning. We used a geomorphic model to identify three river reaches downstream of present migration barriers with high potential for restoration of riverine processes: the Columbia River upstream of John Day Dam, the Columbia-Snake-Yakima River confluence, and the lower Snake River upstream of Little Goose Dam. Our analysis substantiated the assertion that historic spawning areas for fall chinook salmon occurred primarily within wide alluvial floodplains, which were once common in the mainstem Columbia and Snake rivers. These areas possessed more unconsolidated sediment and more bars and islands and had lower water surface slopes than did less extensively used areas. Because flows in the main stem are now highly regulated, the predevelopment alluvial river ecosystem is not expected to be restored simply by operational modification of one or more dams. Establishing more normative flow regimes - specifically, sustained peak flows for scouring - is essential to restoring the functional characteristics of existing, altered habitats. Restoring production of fall chinook salmon to any of these reaches also requires that population genetics and viability of potential seed populations (i.e., from tributaries, tailrace spawning areas, and hatcheries) be considered.

North American Journal of Fisheries Management

Fire helps restore natural disturbance regime to benefit rare and endangered marsh birds endemic to the Colorado River

Large flood events were part of the historical disturbance regime within the lower basin of most large river systems around the world. Large flood events are now rare in the lower basins of most large river systems due to flood control structures. Endemic organisms that are adapted to this historical disturbance regime have become less abundant due to these dramatic changes in the hydrology and the resultant changes in vegetation structure. The Yuma Clapper Rail is a federally endangered bird that breeds in emergent marshes within the lower Colorado River basin in the southwestern United States and northwestern Mexico. We evaluated whether prescribed fire could be used as a surrogate disturbance event to help restore historical conditions for the benefit of Yuma Clapper Rails and four sympatric marsh-dependent birds. We conducted call-broadcast surveys for marsh birds within burned and unburned (control) plots both pre-and post-burn. Fire increased the numbers of Yuma Clapper Rails and Virginia Rails, and did not affect the numbers of Black Rails, Soras, and Least Bitterns. We found no evidence that detection probability of any of the five species differed between burn and control plots. Our results suggest that prescribed fire can be used to set back succession of emergent marshlands and help mimic the natural disturbance regime in the lower Colorado River basin. Hence, prescribed fire can be used to help increase Yuma Clapper Rail populations without adversely affecting sympatric species. Implementing a coordinated long-term fire management plan within marshes of the lower Colorado River may allow regulatory agencies to remove the Yuma Clapper Rail from the endangered species list. ?? 2010 by the Ecological Society of America.

Ecological Applications

Demographic responses of least terns and piping plovers to the 2011 Missouri River flood—A large-scale case study

A catastrophic flood event on the Missouri River system in 2011 led to substantial changes in abundance and distribution of unvegetated sand habitat. This river system is a major component of the breeding range for interior Least terns ( Sternula antillarum ; “terns”) and piping plovers ( Charadrius melodus ; “plovers”), both of which are Federally listed ground-nesting birds that prefer open, unvegetated sand and gravel nesting substrates on sandbars and shorelines. The 2011 flood inundated essentially all tern and plover nesting habitat during 2011, but it had potential to generate post-flood habitat conditions that favored use by terns and plovers in subsequent years. We compared several tern and plover demographic parameters during the pre-flood and post-flood periods on the Garrison Reach and Lake Sakakawea, North Dakota, to determine how this event influenced these species (both species on the Garrison Reach, and plovers only on Lake Sakakawea). The principal parameters we measured (nest survival, chick survival, and breeding population) showed spatial and temporal variation typical of opportunistic species occupying highly variable habitats. There was little evidence that nest survival of least terns differed between pre- and post-flood. During 2012 when habitat was most abundant on the Garrison Reach and Lake Sakakawea, piping plover nest survival was higher than in any other year in the study, but returned to rates comparable to pre-flood years in 2013. Chick survival for terns on the Garrison Reach and plovers on Lake Sakakawea showed a similar pattern to plover nest survival, with the 2012 rate exceeding all other years of the study, and the remaining pre-flood and post-flood years being generally similar but slightly higher in post-flood years. However, plover chick survival on the Garrison Reach in 2012 was similar to pre-flood years, and increased annually thereafter to its highest rate in 2014. Although wide confidence intervals precluded firm conclusions about flood effects on breeding populations, the general pattern suggested lower populations of plovers but higher populations of least terns immediately after the flood. Despite near total absence of breeding habitat on either study area during the flood of 2011, populations of both species persisted after the flood due to their propensity to disperse and/or forgo breeding for at least a year. Tern and plover populations have similarly persisted and recovered after the flood, but their mechanisms for persistence likely differ. Data on tern dispersal is generally lacking, but they are thought to show little fidelity to their natal grounds, have a propensity to disperse potentially long distances, and routinely forgo breeding until their second year, thus a lost opportunity to breed in a given area may be easily overcome. Plovers exhibit stronger demographic ties to the general area in which they previously nested, yet they occupy much broader nesting habitat features than terns and exploit three major landforms in the Dakotas (free-flowing rivers, reservoir shorelines, and wetland shorelines). Consequently, dispersal to and from non-Missouri River habitats and potential to exploit non-traditional habitats likely sustained the Northern Great Plains population through the flood event. Terns and plovers normally occupy similar habitats on the Missouri River and both species experienced similar loss of a breeding season due to the flood. Persistence of these populations after the flood underscores the importance of understanding their unique demographic characteristics and the context within which the Missouri River operates.

North Dakota

Decision analysis of long-term research and monitoring investments for the Upper Mississippi River Restoration program

Congressional authorization of the Water Resource Development Act of 2020 increased funding for the Upper Mississippi River Restoration (UMRR) program and its Long Term Resource Monitoring (LTRM) element. With adequate resources there is an opportunity for LTRM to expand its understanding of the Upper Mississippi River System, address unmet partner information needs, and better inform restoration and management of the Upper Mississippi River System. Additional information needs will need to be identified and prioritized in a manner that accounts for potential tradeoffs among the preferences of UMRR partners for long-term commitments of effort. In this report, we describe a decision analysis process used by UMRR partners to develop a comprehensive framework for prioritizing and selecting the information needs they would address in the event of changes in available resources. The partners of the UMRR formed a “planning team” with members representing the UMRR partner agencies to work through the decision analysis process. This team included two facilitators who led the decision analysis process. The planning team began this process by articulating a consensus understanding of the specific decisions to be made and identifying a set of decision outcomes (objectives) the UMRR partners wanted to achieve. Next, they identified information needs not being addressed by ongoing monitoring and research, developed criteria for assessing the expected benefit of addressing each information need, and estimated the costs of addressing each information need. They then used an optimization approach to identify the portfolio of information needs that would produce the most benefit for a given cost if they were effectively addressed. Originally, the planning team expected this analysis to inform a project plan that would start in 2024, but in recognition of financial uncertainties, we refer to planning dates as the number of years after resources become available (for example, “year 1,” “year 2,” and so on).

Illinois, Iowa, Minnesota, Missouri, Wisconsin

Vulnerability of larval lamprey to Columbia River hydropower system operations—effects of dewatering on larval lamprey movements and survival

Numbers of adult and juvenile Pacific lamprey ( Entosphenus tridentatus ) in the upper Columbia River Basin of the interior Pacific Northwest have decreased from historical levels (Close and others, 2002), raising concerns f rom State and Federal agencies and Tribal entities. In 1994, the U.S. Fish and Wildlife Service designated Pacific lamprey as a Category 2 candidate species and in 2003, the species was petitioned for listing under the Endangered Species Act. Listing consideration and potential recovery planning are significantly hindered by a lack of information on the basic biology and ecology of lampreys, including limiting factors. To date (2015), several factors that may limit lamprey production require study, including dam passage issues, contaminants, and effects on habitat.

Open-File Report

Suspended sediment, turbidity, and stream water temperature in the Sauk River Basin, western Washington, water years 2012-16

The Sauk River is a federally designated Wild and Scenic River that drains a relatively undisturbed landscape along the western slope of the North Cascade Mountain Range, Washington, which includes the glaciated volcano, Glacier Peak. Naturally high sediment loads characteristic of basins draining volcanoes like Glacier Peak make the Sauk River a dominant contributor of sediment to the downstream main stem river, the Skagit River. Additionally, the Sauk River serves as important spawning and rearing habitat for several salmonid species in the greater Skagit River system. Because of the importance of sediment to morphology, flow-conveyance, and ecosystem condition, there is interest in understanding the magnitude and timing of suspended sediment and turbidity from the Sauk River system and its principal tributaries, the White Chuck and Suiattle Rivers, to the Skagit River. Suspended-sediment measurements, turbidity data, and water temperature data were collected at two U.S. Geological Survey streamgages in the upper and middle reaches of the Sauk River over a 4-year period extending from October 2011 to September 2015, and at a downstream location in the lower river for a 5-year period extending from October 2011 to September 2016. Over the collective 5-year study period, mean annual suspended-sediment loads at the three streamgages on the upper, middle, and lower Sauk River streamgages were 94,200 metric tons (t), 203,000 t, and 940,000 t streamgages, respectively. Fine (smaller than 0.0625 millimeter) total suspended-sediment load averaged 49 percent at the upper Sauk River streamgage, 42 percent at the middle Sauk River streamgage, and 34 percent at the lower Sauk River streamgage.

Washington

Ecological status and trends of the Upper Mississippi and Illinois Rivers

Executive Summary This report assesses the status and trends of selected ecological health indicators of the Upper Mississippi River System (UMRS) based on the data collected and analyzed by the Long Term Resource Monitoring element of the Upper Mississippi River Restoration program, supplemented with data from other sources. This report has four objectives: providing a brief introduction of the UMRS, including its significance, history, modern-day stressors, and recent research; using ecological indicators to describe the status of the river system and where and how it has changed from circa 1993 to 2019; discussing management and restoration implications of these changes; and highlighting the fundamental role of long-term monitoring in the understanding, management, and restoration of large-floodplain rivers. The data were collected in the six Long Term Resource Monitoring element study reaches that spanned much of the UMRS and the various gradients contained therein. These study reaches included Navigation Pools 4, 8, 13, and 26; the part of the Unimpounded Reach of the Upper Mississippi River between Grand Tower and Cairo, Illinois; and the La Grange Pool on the Illinois River. The indicators included in this report describe the status and trends for the hydrology, geomorphology, floodplain vegetation, water quality, vegetation, and fishes of the UMRS. Many of the indicators of river ecosystem health changed significantly over the nearly 30 years of our evaluation. However, there was substantial spatial variability in the magnitude and timing of those changes among study reaches. Few indicators changed everywhere or nowhere; most indicators changed in some reaches but not others. The quantitative assessments of these indicators describe how the conditions of the river differ across hydrogeomorphic and climate gradients and through time and are intended to support the restoration and management of the UMRS.

Illinois, Indiana, Iowa, Minnesota, Missouri, Nort

Understanding constraints on submersed vegetation distribution in a large, floodplain river: The role of water level fluctuations, water clarity and river geomorphology

Aquatic vegetation is a key component of large floodplain river ecosystems. In the Upper Mississippi River System (UMRS), there is a long-standing interest in restoring aquatic vegetation in areas where it has declined or disappeared. To better understand what constrains vegetation distribution in large river ecosystems and inform ongoing efforts to restore submersed aquatic vegetation (SAV), we delineated areas in ~1200 river km of the UMRS where the combined effects of water clarity, water level fluctuation, and bathymetry appeared suitable for establishment and persistence of SAV based on a 22-year dataset for total suspended solids (TSS), water surface elevation, and aquatic vegetation distribution. We found a large increase in suitable area downstream from a large natural riverine lake near the northern end of the UMRS (river km 1230) that functions as a sink for suspended material. Downstream from river km 895, there was much less suitable area due to decreased water clarity from tributary input of suspended material, changes in river geomorphology, and increased water level fluctuation. A hypothetical scenario of 75% reduction in TSS resulted in only minor increases in suitable area in the southern portion of the UMRS, indicating limitations by water level fluctuation and/or bathymetry (i.e., limited shallow area). These results improve our understanding of the structure and function of large river systems by illustrating how water clarity, fluctuations in water level, and river geomorphology interact to create complex spatial patterns in habitat suitability for aquatic species and may help to identify locations most and least likely to benefit from management and restoration efforts.

Illinois, Iowa, Minnesota, Missouri, Wisconsin

Hydrologic connectivity and the contribution of stream headwaters to ecological integrity at regional scales

Cumulatively, headwater streams contribute to maintaining hydrologic connectivity and ecosystem integrity at regional scales. Hydrologic connectivity is the water-mediated transport of matter, energy and organisms within or between elements of the hydrologic cycle. Headwater streams compose over two-thirds of total stream length in a typical river drainage and directly connect the upland and riparian landscape to the rest of the stream ecosystem. Altering headwater streams, e.g., by channelization, diversion through pipes, impoundment and burial, modifies fluxes between uplands and downstream river segments and eliminates distinctive habitats. The large-scale ecological effects of altering headwaters are amplified by land uses that alter runoff and nutrient loads to streams, and by widespread dam construction on larger rivers (which frequently leaves free-flowing upstream portions of river systems essential to sustaining aquatic biodiversity). We discuss three examples of large-scale consequences of cumulative headwater alteration. Downstream eutrophication and coastal hypoxia result, in part, from agricultural practices that alter headwaters and wetlands while increasing nutrient runoff. Extensive headwater alteration is also expected to lower secondary productivity of river systems by reducing stream-system length and trophic subsidies to downstream river segments, affecting aquatic communities and terrestrial wildlife that utilize aquatic resources. Reduced viability of freshwater biota may occur with cumulative headwater alteration, including for species that occupy a range of stream sizes but for which headwater streams diversify the network of interconnected populations or enhance survival for particular life stages. Developing a more predictive understanding of ecological patterns that may emerge on regional scales as a result of headwater alterations will require studies focused on components and pathways that connect headwaters to river, coastal and terrestrial ecosystems. Linkages between headwaters and downstream ecosystems cannot be discounted when addressing large-scale issues such as hypoxia in the Gulf of Mexico and global losses of biodiversity.

Journal of the American Water Resources Associatio

Channel-conveyance capacity, channel change, and sediment transport in the lower Puyallup, White, and Carbon Rivers, western Washington

Draining the volcanic, glaciated terrain of Mount Rainier, Washington, the Puyallup, White, and Carbon Rivers convey copious volumes of water and sediment down to Commencement Bay in Puget Sound. Recent flooding in the lowland river system has renewed interest in understanding sediment transport and its effects on flow conveyance throughout the lower drainage basin. Bathymetric and topographic data for 156 cross sections were surveyed in the lower Puyallup River system by the U.S. Geological Survey (USGS) and were compared with similar datasets collected in 1984. Regions of significant aggradation were measured along the Puyallup and White Rivers. Between 1984 and 2009, aggradation totals as measured by changes in average channel elevation were as much as 7.5, 6.5, and 2 feet on the Puyallup, White, and Carbon Rivers, respectively. These aggrading river sections correlated with decreasing slopes in riverbeds where the rivers exit relatively confined sections in the upper drainage and enter the relatively unconstricted valleys of the low-gradient Puget Lowland. Measured grain-size distributions from each riverbed showed a progressive fining downstream. Analysis of stage-discharge relations at streamflow-gaging stations along rivers draining Mount Rainier demonstrated the dynamic nature of channel morphology on river courses influenced by glaciated, volcanic terrain. The greatest rates of aggradation since the 1980s were in the Nisqually River near National (5.0 inches per year) and the White River near Auburn (1.8 inches per year). Less pronounced aggradation was measured on the Puyallup River and the White River just downstream of Mud Mountain Dam. The largest measured rate of incision was measured in the Cowlitz River at Packwood (5.0 inches per year). Channel-conveyance capacity estimated using a one-dimensional hydraulic model decreased in some river reaches since 1984. The reach exhibiting the largest decrease (about 20-50 percent) in channel-conveyance capacity was the White River between R Street Bridge and the Lake Tapps return, a reach affected by recent flooding. Conveyance capacity also decreased in sections of the Puyallup River. Conveyance capacity was mostly unchanged along other study reaches. Bedload transport was simulated throughout the entire river network and consistent with other observations and analyses, the hydraulic model showed that the upper Puyallup and White Rivers tended to accumulate sediment. Accuracy of the bedload-transport modeling, however, was limited due to a scarcity of sediment-transport data sets from the Puyallup system, mantling of sand over cobbles in the lower Puyallup and White Rivers, and overall uncertainty in modeling sediment transport in gravel-bedded rivers. Consequently, the output results from the model were treated as more qualitative in value, useful in comparing geomorphic trends within different river reaches, but not accurate in producing precise predictions of mass of sediment moved or deposited. The hydraulic model and the bedload-transport component were useful for analyzing proposed river-management options, if surveyed cross sections adequately represented the river-management site and proposed management options. The hydraulic model showed that setback levees would provide greater flood protection than gravel-bar scalping after the initial project construction and for some time thereafter, although the model was not accurate enough to quantify the length of time of the flood protection. The greatest hydraulic benefit from setback levees would be a substantial increase in the effective channel-conveyance area. By widening the distance between levees, the new floodplain would accommodate larger increases in discharge with relatively small incremental increases in stage. Model simulation results indicate that the hydraulic benefit from a setback levee also would be long-lived and would effectively compensate for increased deposition within the setback reach

Scientific Investigations Report

Removal of terrestrial DOC in aquatic ecosystems of a temperate river network

Surface waters play a potentially important role in the global carbon balance. Dissolved organic carbon (DOC) fluxes are a major transfer of terrestrial carbon to river systems, and the fate of DOC in aquatic systems is poorly constrained. We used a unique combination of spatially distributed sampling of three DOC fractions throughout a river network and modeling to quantify the net removal of terrestrial DOC during a summer base flow period. We found that aquatic reactivity of terrestrial DOC leading to net loss is low, closer to conservative chloride than to reactive nitrogen. Net removal occurred mainly from the hydrophobic organic acid fraction, while hydrophilic and transphilic acids showed no net change, indicating that partitioning of bulk DOC into different fractions is critical for understanding terrestrial DOC removal. These findings suggest that river systems may have only a modest ability to alter the amounts of terrestrial DOC delivered to coastal zones.

Massachusetts

Genetics, recruitment, and migration patterns of Arctic Cisco (Coregonus autumnalis) in the Colville River, Alaska and Mackenzie River, Canada

Arctic cisco Coregonus autumnalis have a complex anadromous life history, many aspects of which remain poorly understood. Some life history traits of Arctic cisco from the Colville River, Alaska, and Mackenzie River basin, Canada, were investigated using molecular genetics, harvest data, and otolith microchemistry. The Mackenzie hypothesis, which suggests that Arctic cisco found in Alaskan waters originate from the Mackenzie River system, was tested using 11 microsatellite loci and a single mitochondrial DNA gene. No genetic differentiation was found among sample collections from the Colville River and the Mackenzie River system using molecular markers (P > 0.19 in all comparisons). Model-based clustering methods also supported genetic admixture between sample collections from the Colville River and Mackenzie River basin. A reanalysis of recruitment patterns to Alaska, which included data from recent warm periods and suspected changes in atmospheric circulation patterns, still finds that recruitment is correlated to wind conditions. Otolith microchemistry (Sr/Ca ratios) confirmed repeated, annual movements of Arctic cisco between low-salinity habitats in winter and marine waters in summer.

Polar Biology

Distribution and habitat of Nitellopsis obtuse (Characeae) in the Laurentian Great Lakes

Nitellopsis obtusa , a macroalga (Characeae) native to Europe and Asia, was found in U.S. waters of the St. Clair-Detroit River system in 1983, thus extending the range of this taxon into the Laurentian Great Lakes about 850 km from the St. Lawrence River where it was first discovered in North America in 1978. Its occurrence only in water frequented by commercial shipping vessels suggests that it is distributed via this mechanism. In the St. Clair-Detroit River system, N. obtusa was collected with a Ponar grab at four locations, and with a grapnel at one additional location. It was the ninth most frequently found macrophyte and it was most abundant at Belle Isle in the Detroit River, where the mean dry-weight biomass in Ponar samples was 0 g m -2 in June, 37 g m -2 in August, and 32 g m −2 in September. Maximum biomass of this taxon in one Ponar grab at this location was 289 g m -2 in September. The alga occurred primarily in water of relatively low current velocity (11.3 cm s −1 ) and in association with Vallisneria americana, Myriophyllum spicatum, Potamogeton richardsonii, Najas flexilis , and Elodea canadensis .

Hydrobiologia