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At least 271 records · Page 15Linked to original sources

A plastid gene phylogeny of the non-photosynthetic parasitic Orobanche (Orobanchaceae) and related genera

The phylogenetic relationships of the non-photosynthetic Orobanche sensu lato (Orobanchaceae), which includes some of the economically most important parasitic weeds, remain insufficiently understood and controversial. This concerns both the phylogenetic relationships within the genus, in particular its monophyly or lack thereof, and the relationships to other holoparasitic genera such as Cistanche or Conopholis. Here we present the first comprehensive phylogenetic study of this group based on a region from the plastid genome (rps2 gene). Although substitution rates appear to be elevated compared to the photosynthetic members of Orobanchaceae, relationships among the major lineages Cistanche, Conopholis plus Epifagus, Boschniakia rossica (Cham. & Schltdl.) B. Fedtsch., B. himalaica Hook. f. & Thomson, B. hookeri Walp. plus B. strobilacea A. Gray, and Orobanche s. l. remain unresolved. Resolution within Orobanche, however, is much better. In agreement with morphological, cytological and other molecular phylogenetic evidence, five lineages, corresponding to the four traditionally recognised sections (Gymnocaulis, Myzorrhiza, Orobanche, Trionychon) and O. latisquama Reut. ex Boiss. (of sect. Orobanche), can be distinguished. A combined analysis of plastid rps2 and nuclear ITS sequences of the holoparasitic genera results in more resolved and better supported trees, although the relationships among Orobanche s. l., Cistanche, and the clade including the remaining genera is unresolved. Therefore, rps2 is a marker from the plastid genome that is well-suited to be used in combination with other already established nuclear markers for resolving generic relationships of Orobanche and related genera. ?? 2008 The Botanical Society of Japan and Springer.

Journal of Plant Research

Predicting characteristic length scales of barrier island segmentation in microtidal environments

Segmented barrier islands can be found in regions with small tidal ranges. In contrast to tidally dominated barriers, where inlet dynamics are thought to control island length scales, the controls on barrier island length scales in wave-dominated environments have not been quantified. These microtidal barriers typically have a curved shoreline, suggesting the influence of wave-driven alongshore sediment transport. Microtidal barriers are also typically hydrodynamically isolated from one another, as weak tidal flows limit interactions between adjoining barriers. To better understand the controls on and scales of barrier segmentation in the relative absence of tides, here we develop a theoretical framework to estimate the alongshore length scales at which a barrier will either breach or heal following a disturbance in the barrier morphology. The non-dimensional framework compares the timescales of overwash (advective) and alongshore sediment transport (diffusive) processes along barrier island chains. We then apply this framework to modern barrier islands in the microtidal Gulf of Mexico using wave hindcast data and the lengths, widths, heights, and lagoon depths measured from remotely sensed geospatial data and topobathymetric data. We find that most of these barriers are currently longer than their critical length scale, often as a result of coastal restoration efforts. Our critical length scale analysis suggests that most of the Gulf of Mexico barriers are vulnerable to segmentation despite coastal restoration efforts intended to protect fisheries and the mainland coasts.

Florida, Louisiana, Mississippi

Bluff evolution along coastal drumlins: Boston Harbor Islands, Massachusetts

A series of partially drowned drumlins forms the backbone of the inner islands within Boston Harbor. The shoreline of these rounded glacial deposits is composed of actively retreating bluffs formed by continual wave attack. Comparisons of bluffs reveal variability in their height and lateral extent, as well as in the dominant mechanism causing their retreat. Two processes are responsible for bluff erosion and yield distinct bluff morphologies: (1) wave attack undercuts the bluff and causes episodic slumping, yielding planar bluff slopes, and (2) subaerial processes such as rainfall create irregular slopes characterized by rills and gullies. We propose a model of drumlin bluff evolution that is based on processes of erosion and physical characteristics such as bluff height, slope morphology, and the orientation of the bluff with respect to the long axis of the drumlin and its topographic crest. The four phases of drumlin bluff evolution consist of (1) initial formation of bluff, with retreat dominated by wave notching and slumping processes; (2) rill and gully development as bluff heights exceed 10 m and slumped sediment at bluff base inhibits wave attack; (3) return of wave notching and slumping as bluff heights decrease; and (4) final development of boulder retreat lag as last remnants of drumlin are eroded by wave action. These phases capture the important physical processes of drumlin evolution in Boston Harbor and could apply to other eroding coastal drumlin deposits.

Massachusetts

Flood effects on an Alaskan stream restoration project: the value of long-term monitoring

On a nationwide basis, few stream restoration projects have long-term programs in place to monitor the effects of floods on channel and floodplain configuration and floodplain vegetation, but long-term and event-based monitoring is required to measure the effects of these stochastic events and to use the knowledge for adaptive management and the design of future projects. This paper describes a long-term monitoring effort (15 years) on a stream restoration project in Glen Creek in Denali National Park and Preserve in Alaska. The stream channel and floodplain of Glen Creek had been severely degraded over a period of 80 years by placer mining for gold, which left many reaches with unstable and incised streambeds without functioning vegetated floodplains. The objectives of the original project, initiated in 1991, were to develop and test methods for the hydraulic design of channel and floodplain morphology and for floodplain stabilization and riparian habitat recovery, and to conduct research and monitoring to provide information for future projects in similar degraded watersheds. Monitoring methods included surveyed stream cross-sections, vegetation plots, and aerial, ground, and satellite photos. In this paper we address the immediate and outlying effects of a 25-year flood on the stream and floodplain geometry and riparian vegetation. The long-term monitoring revealed that significant channel widening occurred following the flood, likely caused by excessive upstream sediment loading and the fairly slow development of floodplain vegetation in this climate. Our results illustrated design flaws, particularly in regard to identification and analysis of sediment sources and the dominant processes of channel adjustment.

Alaska

Body size and lean mass of brown bears across and within four diverse ecosystems

Variation in body size across populations of brown bears (Ursus arctos) is largely a function of the availability and quality of nutritional resources while plasticity within populations reflects utilized niche width with implications for population resiliency. We assessed skull size, body length, and lean mass of adult female and male brown bears in four Alaskan study areas that differed in climate, primary food resources, population density, and harvest regime. Full body-frame size, as evidenced by asymptotic skull size and body length, was achieved by 8 to 14 years of age across populations and sexes. Lean body mass of both sexes continued to increase throughout their life. Differences between populations existed for all morphological measures in both sexes, bears in ecosystems with abundant salmon were generally larger. Within all populations, broad variation was seen in body size measures of adults with females displaying roughly a 2-fold difference in lean mass and males showing a 3- to 4-fold difference. The high level of intraspecific variation seen across and within populations suggests the presence of multiple life-history strategies and niche variation relative to resource partitioning, risk tolerance or aversion, and competition. Further, this level of variation indicates broad potential to adapt to changes within a given ecosystem and across the species’ range.

Alaska

Effects of exercise and bioprocessed soybean meal diets during rainbow trout rearing

Background: Alternative protein sources to fishmeal in fish feeds are needed. Objectives: Evaluate rearing performance of adult rainbow trout (Oncorhynchus mykiss) (initial weight 139.0 ±1.5 g, length 232.9 ± 0.8 mm, mean ± SE) fed one of the two isonitrogenous and isocaloric diets (46% protein, 16% lipid) and reared at one of the two levels of exercise (water velocities of either 3.6 cm/s or 33.2 cm/s). Methods: Protein in the control diet was based on fishmeal. In the experimental diet, bioprocessed soybean meal replaced approximately 60% of the fishmeal. Fish were fed by hand once-per-day to near satiation, and the food was increased daily. The experiment lasted 90-days. Results: There were no significant differences in gain, percent gain, or specific growth rate between the dietary treatments. However, the amount of food fed and feed conversion ratio was significantly lower in the 60% bioprocessed soybean meal diet. Intestinal morphology, relative fin length, splenosomatic index, hepatosomatic index, and viscerosomatic index were not significantly different in the trout fed either diet. Fish reared at 3.6 cm/s had a significantly lower feed conversion ratio (1.02 ± 0.02) than fish reared at 33.2 cm/s (1.13 ± 0.02). However, there were no significant differences in gain, percent gain, specific growth rate, or percentage mortality in fish reared with or without exercise. No significant interactions were observed between diet and exercise (higher water velocity). Conclusion:Based on these results, at least 60% of the fishmeal in adult rainbow trout diets can be replaced by bioprocessed soybean meal, even if higher water velocities are used to exercise the fish.

The Open Biology Journal

Refining aging criteria for northern sea otters in Washington State

Measurement of skull ossification patterns is a standard method for aging various mammalian species and has been used to age sea otters Enhydra lutris from Russia, California, and Alaska. Cementum annuli counts have also been verified as an accurate aging method for sea otters in Alaska. In this study, we compared cementum annuli count results and skull ossification patterns as methods for aging the northern sea otter, E. l. kenyoni, in Washington State. We found significant agreement between the two methods, suggesting that either method could be used to age sea otters in Washington. We found that ossification of the squamosal–jugal suture at the ventral glenoid fossa can be used to differentiate male subadults from adults. To assist field biologists or others without access to cementum annuli or skull ossification analysis techniques, we analyzed a suite of morphologic, physiologic, and developmental characteristics to assess whether a set of these more easily accessible parameters could also predict age class. We identified tooth condition score, evidence of reproductive activity in females, and tooth eruption pattern as the most useful criteria for classifying sea otters in Washington. We created a simple decision tree based on characteristics accessible in the field or at necropsy, which can be used to reliably predict age class of Washington sea otters as determined by cementum annuli. These techniques offer field biologists and marine mammal stranding networks a replicable, cost-conscious methodology to gather useful biological information from sea otters.

Washington

Morphology of androgenetic and gynogenetic grass carp, Ctenopharyngodon idella (Valenciennes)

Crosses between female carp x male grass carp resulted in androgenetic grass carp and hybrids. Fertilizing grass carp eggs with carp milt that had been irradiated with ultraviolet light for 15 min at 1.0 mW/cm 2 produced gynogenetic grass carp. We compared the morphology of experimental progeny with that of the parental species to determine if inheritance was strictly matroclinous in gynogenesis and strictly patroclinous in andro-genesis. Dorsal and anal fin rays, lateral line scales, gill rakers, pharyngeal teeth, and the relative length of the dorsal fin all suggested that gynogenetic grass carp were identical with the maternal species and androgenetic grass carp with the paternal species. Hybrids were intermediate between the parents except that the number of anal rays was identical with that in carp. The number of dorsal rays, the body depth, and the pharyngeal teeth in hybrids were more like those in carp than in grass carp, whereas the number of gill rakers was more similar to that in the paternal species.

Journal of Fish Biology

Evidence of sexually dimorphic introgression in Pinaleno Mountain Apache trout

The high-elevation headwater streams of the Pinaleno Mountains support small populations of threatened Apache trout Oncorhynchus apache that were stocked following the chemical removal of nonnative salmonids in the 1960s. A fisheries survey to assess population composition, growth, and size structure confirmed angler reports of infrequent occurrences of Oncorhynchus spp. exhibiting the external morphological characteristics of both Apache trout and rainbow trout O. mykiss. Nonlethal tissue samples were collected from 50 individuals in the headwaters of each stream. Mitochondrial DNA (mtDNA) sequencing and amplification of nuclear microsatellite loci were used to determine the levels of genetic introgression by rainbow trout in Apache trout populations at these locations. Sexually dimorphic introgression from the spawning of male rainbow trout with female Apache trout was detected using mtDNA and microsatellites. Estimates of the degree of hybridization based on three microsatellite loci were 10-88%. The use of nonlethal DNA genetic analyses can supplement information obtained from standard survey methods and be useful in assessing the relative importance of small and sensitive populations with a history of nonnative introductions.

North American Journal of Fisheries Management

Quantifying anthropogenically driven morphologic changes on a barrier island: Fire Island National Seashore, New York

Beach scraping, beach replenishment, and the presence of moderate development have altered the morphology of the dune–beach system at Fire Island National Seashore, located on a barrier island on the south coast of Long Island, New York. Seventeen communities are interspersed with sections of natural, nonmodified land within the park boundary. Beach width, dune elevation change, volume change, and shoreline change were calculated from light detection and ranging (LIDAR), real-time kinematic global positioning system (RTK GPS), and beach profile data sets at two ∼4 km long study sites. Each site contains both modified (developed, replenished, and/or scraped) and nonmodified (natural) areas. The analysis spans 9 years, from 1998 to 2007, which encompasses both scraping and replenishment events at Fire Island. The objectives of this study were to quantify and compare morphological changes in modified and nonmodified zones, and to identify erosional areas within the study sites. Areas of increased volume and shoreline accretion were observed at both sites and at the western site are consistent with sand replenishment activities. The results indicate that from 1998 to 2007 locations backed by development and that employed beach scraping and/or replenishment as erosion control measures experienced more loss of volume, width, and dune elevation as compared with adjacent nonmodified areas. A detailed analysis of one specific modification, beach scraping, shows distinct morphological differences in scraped areas relative to nonscraped areas of the beach. In general, scraped areas where there is development on the dunes showed decreases in all measured parameters and are more likely to experience overwash during storm events. Furthermore, the rapid mobilization of material from the anthropogenic (scraped) dune results in increased beach accretion downcoast. National park lands are immediately adjacent to developed areas on Fire Island, and even relatively small human-induced modifications can affect park resources and beach–dune response to storms. This study is the first to conduct a systematic analysis on how anthropogenic modifications affect resources at Fire Island National Seashore and provides essential information for effective management and preservation of coastal resources within the park.

New York

Recharge from a subsidence crater at the Nevada test site

Current recharge through the alluvial fans of the Nevada Test Site (NTS) is considered to be negligible, but the impact of more than 400 nuclear subsidence craters on recharge is uncertain. Many of the craters contain a playa region, but the impact of these playas has not been addressed. It was hypothesized that a crater playa would focus infiltration through the surrounding coarser-grained material, thereby increasing recharge. Crater U5a was selected because it represented a worst case for runoff into craters. A borehole was instrumented for neutron logging beneath the playa center and immediately outside the crater. Physical and hydraulic properties were measured along a transect in the crater and outside the crater. Particle-size analysis of the 14.6 m of sediment in the crater and morphological features of the crater suggest that a large ponding event of ≈63000 m 3 had occurred since crater formation. Water flow simulations with HYDRUS-2D, which were corroborated by the measured water contents, suggest that the wetting front advanced initially by as much as 30 m yr −1 with a recharge rate 32 yr after the event of 2.5 m yr −1 Simulations based on the measured properties of the sediments suggest that infiltration will occur preferentially around the playa perimeter. However, these sediments were shown to effectively restrict future recharge by storing water until removal by evapotranspiration (ET). This work demonstrated that subsidence craters may be self-healing.

Soil Science Society of America Journal

Spatial segregation of cisco (Coregonus artedi) and lake whitefish (C. clupeaformis) larvae in Chaumont Bay, Lake Ontario

Abstract Two of the remaining coregonine species in Lake Ontario, cisco (Coregonus artedi) and lake whitefish (C. clupeaformis), spawn in Chaumont Bay, NY. Larvae co-occur in the spring but are difficult to distinguish morphologically. We applied genetic species identification using microsatellite DNA loci of 268 larvae from known locations in nearshore and offshore habitats in Chaumont Bay to determine the extent of mixing of these species in each habitat. Cisco dominated (95% of larvae) the larvae in offshore habitats and lake whitefish dominated (84%) in nearshore habitats, where seven of eight putative hybrids occurred. Habitat segregation between these two species at the larval stage has implications for productivity estimates. Discrimination between cisco and lake whitefish larvae helps to characterize habitat and basic life history needs and to focus research collections. Genetic species identification should be applied to larger samples of larvae to evaluate changes in larval distributions and associations with environmental conditions.

Chaumont Bay

Impacts of forest fragmentation on species richness: A hierarchical approach to community modelling

1. Species richness is often used as a tool for prioritizing conservation action. One method for predicting richness and other summaries of community structure is to develop species-specific models of occurrence probability based on habitat or landscape characteristics. However, this approach can be challenging for rare or elusive species for which survey data are often sparse. 2. Recent developments have allowed for improved inference about community structure based on species-specific models of occurrence probability, integrated within a hierarchical modelling framework. This framework offers advantages to inference about species richness over typical approaches by accounting for both species-level effects and the aggregated effects of landscape composition on a community as a whole, thus leading to increased precision in estimates of species richness by improving occupancy estimates for all species, including those that were observed infrequently. 3. We developed a hierarchical model to assess the community response of breeding birds in the Hudson River Valley, New York, to habitat fragmentation and analysed the model using a Bayesian approach. 4. The model was designed to estimate species-specific occurrence and the effects of fragment area and edge (as measured through the perimeter and the perimeter/area ratio, P/A), while accounting for imperfect detection of species. 5. We used the fitted model to make predictions of species richness within forest fragments of variable morphology. The model revealed that species richness of the observed bird community was maximized in small forest fragments with a high P/A. However, the number of forest interior species, a subset of the community with high conservation value, was maximized in large fragments with low P/A. 6. Synthesis and applications. Our results demonstrate the importance of understanding the responses of both individual, and groups of species, to environmental heterogeneity while illustrating the utility of hierarchical models for inference about species richness for conservation. This framework can be used to investigate the impacts of land-use change and fragmentation on species or assemblage richness, and to further understand trade-offs in species-specific occupancy probabilities associated with landscape variability.

New York

Leisure boat harbours, hidden alien species, and pollution: A case study of Hinsholmskilen harbour (Gothenburg, Sweden)

Small leisure boat harbours have important aesthetic and recreational values in any country with a coastline. In Sweden, there are about 860 000 leisure boats, which is one of the world's highest numbers in relation to the country's population. However, small boat harbours also present a wide range of environmental problems, including the introduction of alien species and high pollution. In this study, we investigated the ecological quality status (EcoQS) of the Hinsholmskilen small boat harbour, located southwest of the city of Gothenburg (Sweden). We performed a reconnaissance survey of the harbour's previously unstudied benthic foraminiferal communities and analysed surface sediment (0–2 cm) samples for potentially toxic elements: copper (Cu), zinc (Zn), lead (Pb), cobalt (Co), nickel (Ni), chromium (Cr), mercury (Hg), and arsenic (As). The results show that, based on the total benthic foraminiferal distribution (dead and live specimens), the assemblages in Hinsholmskilen harbour represent a typical European estuarine community with highly abundant Ammonia and Elphidium species. Based on molecular and morphological data, we report the presence of two alien and putatively invasive species likely originating from Asia: Trochammina hadai and Ammonia confertitesta (phylotype T6). Both species have recently been identified elsewhere on the Swedish west coast based on molecular and morphological data but do not have a well-known distribution. The sediment analysis for potentially toxic elements showed that the harbour has good to high EcoQS corresponding to no or little deviation from reference conditions for Cd, Co, Ni, and Pb distribution. Some of the contaminants (Pb, As, Zn, and Cr) showed poor to bad EcoQS in the innermost harbour in proximity to high-pressure cleaning plants, where boats are usually lifted, cleaned, and prepared for winter storage on land. Finally, Cu and Hg showed consistently bad and poor EcoQS all over the harbour, reflecting the use of both metals as biocides in antifouling boat paints.

Gothenburg

Occurrence, morphometrics, and plumage variability among Leach’s Storm-Petrels Oceanodroma leucorhoa in the California Channel Islands, 1976–2015

We mist-netted and examined Leach’s Storm-Petrels Oceanodroma leucorhoa (LESP) caught during 1991–2015 at three locations in the California Channel Islands (CCI): Prince Island, Santa Barbara-Sutil islands and Scorpion Rock. Although mist-netting methods and effort varied between two study periods (1991–1995, 2004–2007 and 2015), during 750 h effort we captured 41 LESP during April–August, with two of these recaptured after initial banding. The majority (78%) were classified as likely breeders based on a well-developed incubation patch. We summarize island-specific efforts, capture rates and morphological measurements made at these three CCI locations. Captured LESP displayed a multimodal distribution in the overall degree of white rump plumage, with 28% classified as mostly “dark-rumped.” The majority of LESP (72%) captured in the CCI have variable white rumps, similar to what has been reported for northern California and the Farallon Islands. However, the relative proportions of “dark-rumped” individuals captured in the northern CCI is intermediate, within the shift starting at the Farallon Islands and increasing in prevalence toward the San Benito Islands, Baja California. More remains to be learned about LESP in the CCI, for which additional mist-netting efforts are needed, using a standardized approach that targets LESP.

California

Interlaboratory study: Testing reproducibility of solid biofuels component identification using reflected light microscopy

Considering global market trends and concerns about climate change and sustainability, increased biomass use for energy is expected to continue. As more diverse materials are being utilized to manufacture solid biomass fuels, it is critical to implement quality assessment methods to analyze these fuels thoroughly. One such method is reflected light microscopy (RLM), which has the potential to complement and enhance current standard testing, leading to improving fuel quality assessment and, ultimately, preventing avoidable air pollution. An interlaboratory study (ILS) was conducted to test the reproducibility of biomass fuels component identification using a reflected light microscopy technique. The exercise was conducted on thirty photomicrographs showing biomass and various undesired components (like plastics or mineral matter), which were purposely added (by the ILS organizers) to contaminate wood pellets and charcoal-based grilling fuels. Forty-six participants had various levels of difficulty identifying the marked components, and as a result, the percentage of correct answers ranged from 52.2 to 94.4%. Among the most difficult components to distinguish were petroleum products and inorganic matter. Various reasons led to the misidentification, including insufficient morphological descriptions of the components provided to participants, ambiguities of the nomenclature, limitations of the analytical and exercise method, and insufficient experience of the participants. Overall, the results indicate that RLM has the potential to enhance the quality assessment of biomass fuels. However, they also demonstrate that the petrographic classification used in this exercise requires further refinement before it can be standardized. While a new simplified classification of solid biomass fuels components was created as an outcome of this study, future research is necessary to refine the nomenclature, develop a microscopic morphological description of the components, and verify the accuracy of component identification with a follow-up ILS.

International Journal of Coal Geology

First direct confirmation of grass carp spawning in a Great Lakes tributary

Grass carp ( Ctenopharyngodon idella ), an invasive species of Asian carp, has been stocked for many decades in the United States for vegetation control. Adult individuals have been found in all of the Great Lakes except Lake Superior, but no self-sustaining populations have yet been identified in Great Lakes tributaries. In 2012, a commercial fisherman caught four juvenile diploid grass carp in the Sandusky River, a major tributary to Lake Erie. Otolith microchemistry and the capture location of these fish permitted the conclusion that they were most likely produced in the Sandusky River. Due to this finding, we sampled ichthyoplankton using paired bongo net tows and larval light traps during June–August of 2014 and 2015 to determine if grass carp are spawning in the Sandusky River. From the samples collected in 2015, we identified and staged eight eggs that were morphologically consistent with grass carp. Five eggs were confirmed as grass carp using quantitative Polymerase Chain Reaction for a grass carp-specific marker, while the remaining three were retained for future analysis. Our finding confirms that grass carp are naturally spawning in this Great Lakes tributary. All eggs were collected during high-flow events, either on the day of peak flow or 1–2 days following peak flow, supporting an earlier suggestion that high flow conditions favor grass carp spawning. The next principal goal is to identify the spawning and hatch location(s) for the Sandusky River. Predicting locations and conditions where grass carp spawning is most probable may aid targeted management efforts.

Lake Erie, Sandusky River

Retention and dimensional changes of evergreen brush piles within a flood control reservoir

Brush piles (i.e., trees and large woody debris) are often installed in reservoirs to supplement fish habitat. The retention and dimensional change of brush piles after installation is important information that can be used to maximize the effectiveness of this management action. We evaluated the retention and dimensional change of 70 eastern red cedar Juniperus virginiana and bald cypress Taxodium distichum brush piles in an embayment of a drawdown reservoir up to four annual cycles of submergence and exposure. We used satellite imagery to supplement our onsite measurements of retention. We also examined spatial patterns of brush pile retention and dimensional change. Brush piles were lost at 10% per year, and their volume was lost at 14% per year. We compared our rates of brush pile retention and dimensional change with those from a holdout data set of 50 brush piles. Estimates between data sets did not differ statistically. Spatial patterns of retention and dimensional change coincided with morphological features in our study area, suggesting that retention and dimensional change is influenced by variable physical forces (e.g., wave action and flow) at installation locations. Our estimates of brush pile retention and dimensional change can be used to generally sustain desirable brush densities. For example, to maintain a fixed total volume of brush in our study embayment, roughly 23% of the total brush volume installed would need to be replaced annually. Similar research in reservoirs managed for other purposes is needed, as length and cycle of inundation could lead to variable rates of retention and dimensional change. Additionally, advancements into computer-assisted detection and volume estimation could reduce the time and effort needed to monitor brush piles.

Mississippi