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At least 271 records · Page 15Linked to original sources

USGS2016

Transcriptome discovery in non-model wild fish species for the development of quantitative transcript abundance assays

Environmental studies increasingly identify the presence of both contaminants of emerging concern (CECs) and legacy contaminants in aquatic environments; however, the biological effects of these compounds on resident fishes remain largely unknown. High throughput methodologies were employed to establish partial transcriptomes for three wild-caught, non-model fish species; smallmouth bass ( Micropterus dolomieu ), white sucker ( Catostomus commersonii ) and brown bullhead ( Ameiurus nebulosus ). Sequences from these transcriptome databases were utilized in the development of a custom nCounter CodeSet that allowed for direct multiplexed measurement of 50 transcript abundance endpoints in liver tissue. Sequence information was also utilized in the development of quantitative real-time PCR (qPCR) primers. Cross-species hybridization allowed the smallmouth bass nCounter CodeSet to be used for quantitative transcript abundance analysis of an additional non-model species, largemouth bass ( Micropterus salmoides ). We validated the nCounter analysis data system with qPCR for a subset of genes and confirmed concordant results. Changes in transcript abundance biomarkers between sexes and seasons were evaluated to provide baseline data on transcript modulation for each species of interest.

Comparative Biochemistry and Physiology, Part D: G↗

USGS2005

A non-lethal method to estimate CYP1A expression in laboratory and wild Atlantic salmon ( Salmo salar )

Expression of cytochrome P4501A (CYP1A) has been used as a biomarker for possible exposure to contaminants such as PCBs and dioxins in teleost fish. Using a quantitative reverse transcription-polymerase chain reaction (Q-RT-PCR) and a non-lethal gill biopsy, we estimated levels of CYP1A mRNA expression in Atlantic salmon ( Salmo salar ). Groups of ten Atlantic salmon juveniles (48–76 g) received an intraperitoneal injection of 50 μg g − 1 β-naphthoflavone (BNF) or vehicle. Their gill tissues were repeatedly sampled by non-lethal biopsies on day 0, 1, 2 and 7. Control fish expressed basal levels of CYP1A over the duration of sampling. BNF-treated salmon demonstrated similar levels of CYP1A to control fish at day 0 and higher levels over the course of each additional sampling point. Gill biopsies from wild salmon sampled from Millers River (South Royalston, Worcester County, MA, USA), known to contain PCBs, showed significantly higher CYP1A levels over an uncontaminated reference stream, Fourmile Brook (Northfield, Franklin County, MA, USA). We conclude that gill biopsies coupled with Q-RT-PCR analysis is a valuable tool in environmental assessment of wild Atlantic salmon populations and has the potential to be applied to other populations of fish as well.

Comparative Biochemistry and Physiology, Part C: T↗

USGS2025

Characterizing sedimentary organic carbon in a hydrothermal spreading center, the Escanaba Trough

Sediments in critical marine mineral environments are of wide importance due to their preservation of both marine minerals and organic carbon (OC) stocks. However, OC storage and cycling is often overlooked in mineral system studies. This work characterizes sedimentary OC within the Escanaba Trough, a hydrothermal sulfide system off the coast of northern California. By utilizing ROV-based push coring, we collected sediments near and far from high temperature, low temperature, and inactive vents. We applied a multipronged organic geochemical approach, measuring bulk sediment, OC fractions of varying labilities, and biomarkers to tease apart the storage, source, and cycling of OC within this complex system. In contrast to past work indicating a primarily terrestrial source to deeper, Pleistocene sediments, our results suggest a primarily marine source in surface sediments at least 50 m away from active venting. Near active venting, we see evidence of locally produced chemosynthetic OC in addition to the background marine source. This chemosynthetic OC appears to be rapidly remineralized and supports more complex deep-sea food webs compared to hemipelagic sites. Still, the greatest contribution of labile OC was observed at inactive vent sites, which we suggest is due to hydrothermal fluid alteration of more labile OC at actively venting sites. Depending on fluid temperature, hydrothermally altered OC is either preserved in the sediments as petroleum or migrated with fluid flow. Considering inactive sites are those most likely to be targeted by potential mining, we suggest additional studies could verify if these results apply at other sedimented seafloor massive sulfide systems.

California↗

USGS2023

Broadening the perspectives of sedimentary organic matter analysis to understand Earth system response to change

This paper broadens the description of sedimentary organic matter from the conventional use of coal petrography to include palynological and geochemical sedimentary organic matter. Palynological sedimentary organic matter includes all chemically resistant organic microfossils, such as pollen and spores, dinocysts, microforaminifera (chitinoid-like linings of foraminifera), microscopic algae, charcoal, palynodebris, acritarchs, chitinozoans, and scolecodonts. Geochemical sedimentary organic matter includes organic biomarkers, lipids, and photosynthetic pigments. We provide examples of the use of palynological and geochemical analysis of sedimentary organic matter to understand patterns and impacts of changing climate, fire regimes, hydrologic extremes, water quality, and land change on terrestrial and marine systems through geologic time to provide a long-term perspective to evaluate anthropogenic impacts on the Earth as well as to support forensics investigations.

International Journal of Coal Geology↗

USGS2017

Seasonal variability in particulate matter source and composition to the depositional zone of Baltimore Canyon, U.S. Mid-Atlantic Bight

Submarine canyons are often hotspots of biomass and productivity in the deep sea. However, the majority of deep-sea canyons remain poorly sampled. Using a multi-tracer approach, results from a detailed geochemical investigation from a year-long sediment trap deployment reveals details concerning the source, transport, and fate of particulate matter to the depositional zone (1318 m) of Baltimore Canyon on the US Mid-Atlantic Bight (MAB). Both organic biomarker composition (sterol and n-alkanes) and bulk characteristics (δ13C, Δ14C, Chl-a) suggest that on an annual basis particulate matter from marine and terrestrially-derived organic matter are equally important. However, elevated Chlorophyll-a and sterol concentrations during the spring sampling period highlight the seasonal influx of relatively fresh phytodetritus. In addition, the contemporaneous increase in the particle reactive elements cadmium (Cd) and molybdenum (Mo) in the spring suggest increased scavenging, aggregation, and sinking of biomass during seasonal blooms in response to enhanced surface production within the nutricline. While internal waves within the canyon resuspend sediment between 200 and 600 m, creating a nepheloid layer rich in lithogenic material, near-bed sediment remobilization in the canyon depositional zone is minimal. Instead, vertical transport and lateral transport across the continental margin are the dominant processes driving seasonal input of particulate matter. In turn, seasonal variability in deposited particulate organic matter may be linked to benthic faunal composition and ecosystem scale carbon cycling.

Deep-Sea Research Part I: Oceanographic Research P↗

USGS2004

The bioavailability of chemicals in soil for earthworms

The bioavailability of chemicals to earthworms can be modified dramatically by soil physical/chemical characteristics, yet expressing exposure as total chemical concentrations does not address this problem. In order to understand the effects of modifying factors on bioavailability, one must measure and express chemical bioavailability to earthworms in a consistent, logical manner. This can be accomplished by direct biological measures of bioavailability (e.g., bioaccumulation, critical body residues), indirect biological measures of bioavailability (e.g., biomarkers, reproduction), or indirect chemical measures of bioavailability (e.g., chemical or solid-phase extracts of soil). If indirect chemical measures of bioavailability are to be used, they must be correlated with some biological response. Bioavailability can be incorporated into ecological risk assessment during risk analysis, primarily in the estimation of exposure. However, in order to be used in the site-specific ecological risk assessment of chemicals, effects concentrations must be developed from laboratory toxicity tests based on exposure estimates utilizing techniques that measure the bioavailable fraction of chemicals in soil, not total chemical concentrations. ?? 2003 Elsevier Inc. All rights reserved.

Conference Paper↗

USGS2007

Accumulation of metals in fish from lead-zinc mining areas of southeastern Missouri, USA

The potential effects of proposed lead-zinc mining in an ecologically sensitive area were assessed by studying a nearby mining district that has been exploited for about 30 yr under contemporary environmental regulations and with modern technology. Blood and liver samples representing fish of three species (largescale stoneroller, Campostoma oligolepis, n=91; longear sunfish, Lepomis megalotis, n=105; and northern hog sucker, Hypentelium nigricans, n=20) were collected from 16 sites representing a range of conditions relative to lead-zinc mining and ore beneficiation in southeastern Missouri. Samples were analyzed for lead, zinc, and cadmium, and for a suite of biomarkers (reported in a companion paper). A subset of the hog sucker (n=9) representing three sites were also analyzed for nickel and cobalt. Blood and liver lead concentrations were highly correlated (r=0.84-0.85, P < 0.01) in all three species and were significantly (ANOVA, P < 0.01) greater at sites < 10 km downstream of active lead-zinc mines and mills and in a historical lead-zinc mining area than at reference sites, including a site in the area proposed for new mining. Correlations between blood and liver cadmium concentrations were less evident than for lead but were nevertheless statistically significant (r=0.26-0.69, P < 0.01-0.07). Although blood and liver cadmium concentrations were highest in all three species at sites near mines, within-site variability was greater and mining-related trends were less evident than for lead. Blood and liver zinc concentrations were significantly correlated only in stoneroller (r=0.46, P < 0.01) and mining-related trends were not evident. Concentrations of cobalt and nickel in blood and liver were significantly higher (ANOVA, P < 0.01) at a site near an active mine than at a reference site and a site in the historical lead-zinc mining area. These findings confirm previous studies indicating that lead and other metals are released to streams from active lead-zinc mines and are available for uptake by aquatic organisms. ?? 2006 Elsevier Inc. All rights reserved.

Ecotoxicology and Environmental Safety↗

USGS2006

Biliary PAH metabolites and the hepatosomatic index of brown bullheads from Lake Erie tributaries

In studies designed to investigate the environmental exposure of fish in Lake Erie tributaries, a benthic fish, the brown bullhead (Ameiurus nebulosus), was collected from the industrially contaminated Detroit River, Ottawa River, Black River, Cuyahoga River-harbor and -upstream, Ashtabula River, Buffalo River, and Niagara River, and the non-industrialized Old Woman Creek during 1997-2000. Biliary benzo[a]pyrene (B[a]P)- and naphthalene (NAPH)-type metabolites and the hepatosomatic index (HSI) were measured in fish and compared between different sites. Fish from all of the contaminated sites except Niagara River had significantly higher concentrations of both types of polycyclic aromatic hydrocarbon (PAH) metabolites than fish from the Old Woman Creek. Concentrations of PAH metabolites in bile of fish were positively associated with concentrations of PAHs in sediments, supporting the use of bile metabolites as a measure of PAH exposure. Relatively low concentrations of PAHs detected in fish bile and sediments of the Niagara River, which had undergone extensive remediation, suggested a lowered PAH exposure for fish at this site. No apparent trend was observed in HSI between the industrialized and non-industrialized sites. This study demonstrates that biliary PAH metabolites are an effective indicator of exposure of fish to PAHs. However, because factors other than contamination could also affect the liver size of wild fish, HSI alone may be not a reliable biomarker for assessing contaminant stress. ?? 2005 Elsevier Ltd. All rights reserved.

Ecological Indicators↗

USGS2016

Impact of Deepwater Horizon Spill on food supply to deep-sea benthos communities

Deep-sea ecosystems encompass unique and often fragile communities that are sensitive to a variety of anthropogenic and natural impacts. After the 2010 Deepwater Horizon (DWH) oil spill, sampling efforts documented the acute impact of the spill on some deep-sea coral colonies. To investigate the impact of the DWH spill on quality and quantity of biomass delivered to the deep-sea, a suite of geochemical tracers (e.g., stable and radio-isotopes, lipid biomarkers, and compound specific isotopes) was measured from monthly sediment trap samples deployed near a high-density deep-coral site in the Viosca Knoll area of the north-central Gulf of Mexico prior to (Oct-2008 to Sept-2009) and after the spill (Oct-10 to Sept-11). Marine (e.g., autochthonous) sources of organic matter dominated the sediment traps in both years, however after the spill, there was a pronounced reduction in marinesourced OM, including a reduction in marine-sourced sterols and n-alkanes and a concomitant decrease in sediment trap organic carbon and pigment flux. Results from this study indicate a reduction in primary production and carbon export to the deep-sea in 2010-2011, at least 6-18 months after the spill started. Whereas satellite observations indicate an initial increase in phytoplankton biomass, results from this sediment trap study define a reduction in primary production and carbon export to the deep-sea community. In addition, a dilution from a low-14C carbon source (e.g., petrocarbon) was detected in the sediment trap samples after the spill, in conjunction with a change in the petrogenic composition. The data presented here fills a critical gap in our knowledge of biogeochemical processes and sub-acute impacts to the deep-sea that ensued after the 2010 DWH spill.

Gulf of Mexico↗

USGS2006

Effects of polychlorinated biphenyls, hexachlorocyclohexanes, and mercury on human neutrophil apoptosis, actin cytoskelton, and oxidative state

Apoptosis, or programmed cell death, has been proposed as a biomarker for environmental contaminant effects. In this work, we test the hypothesis that in vitro assays of apoptosis are sensitive indicators of immunological effects of polychlorinated biphenyls, hexachlorocyclohexanes, and mercury on human neutrophils. Apoptosis, necrosis, and viability as well as the related indicators F-actin levels, and active thiol state were measured in purified human neutrophils after treatment with contaminants. Effective concentrations observed were 0.3 μM (60 μg/L) mercury, 750 μg/L Aroclor 1254, and 50 μM (14,500 μg/L) hexachlorocylcohexanes. Concentrations of contaminants that induced apoptosis also decreased cellular F-actin levels. Active thiols were altered by mercury, but not organochlorines. Comparison of these data with levels of contaminants reported to be threats to human health indicate neutrophil apoptosis is a sensitive indicator of mercury toxicity.

Environmental Toxicology and Pharmacology↗

USGS2023

Can spatial food web subsidies associated with river hydrology and lateral connectivity be detected using stable isotopes?

During and following lateral connections, aquatic organisms residing in the river channel may assimilate material from sources imported from oxbows, and oxbow residents may consume and assimilate material imported from the channel. Hydrology, lateral connectivity, and stable isotope ratios of fishes and mussels were analyzed for evidence of spatial food web subsidies between the active channel and oxbow lakes in the floodplain of the Guadalupe River, Texas. During surveys conducted between March 2016 and April 2017, fish, mussel, periphyton, seston, and riparian plant samples were collected in and around two oxbows and adjacent channel sites for analysis of stable isotope ratios. Biplots of δ 13 C and δ 15 N were graphed for basal sources and specimens of six common fish species, four sunfish species ( Lepomis spp. combined), and two mussel species (Unionidae combined) captured from oxbows and the channel. Within each graph, polygons were drawn to indicate the space occupied by animals that could have assimilated feasible combinations of source materials originating from either oxbows or the river channel. Based on positions of animals within source polygons, riparian C4 grasses were not an important source of organic matter supporting biomass of fishes and mussels within the channel or oxbows. Overall, 84% of organisms had isotopic signatures consistent with assimilation of in situ sources, but also 76% of all organisms were inconclusive with regards to cross-habitat exchanges. Outliers that may have assimilated ex situ source material were observed for only 4% of 313 organisms from oxbows and 9% of 232 organisms from the channel, and some but not all of these cases followed high flow pulses that connected oxbows for extended periods. Several issues that compromise inferences from stable isotope analysis were identified, and estimation of spatial food web subsidies in fluvial systems could be enhanced by analyzing additional biomarkers, such as isotopic ratios of other elements and compound-specific stable isotopes, as well as additional sources, time-specific biotracers, and experimental approaches that directly track movement of sources and organisms in spatially structured food webs.

Texas↗

USGS2013

Evaluation of the rhenium-osmium geochronometer in the Phosphoria petroleum system, Bighorn Basin of Wyoming and Montana, USA

Rhenium-osmium (Re-Os) geochronometry is applied to crude oils derived from the Permian Phosphoria Formation of the Bighorn Basin in Wyoming and Montana to determine whether the radiogenic age reflects the timing of petroleum generation, timing of migration, age of the source rock, or the timing of thermochemical sulfate reduction (TSR). The oils selected for this study are interpreted to be derived from the Meade Peak Phosphatic Shale and Retort Phosphatic Shale Members of the Phosphoria Formation based on oil-oil and oil-source rock correlations utilizing bulk properties, elemental composition, δ 13 C and δ 34 S values, and biomarker distributions. The δ 34 S values of the oils range from -6.2‰ to +5.7‰, with oils heavier than -2‰ interpreted to be indicative of TSR. The Re and Os isotope data of the Phosphoria oils plot in two general trends: (1) the main trend (n = 15 oils) yielding a Triassic age (239 ± 43 Ma) with an initial 187 Os/ 188 Os value of 0.85 ± 0.42 and a mean square weighted deviation (MSWD) of 1596, and (2) the Torchlight trend (n = 4 oils) yielding a Miocene age (9.24 ± 0.39 Ma) with an initial 187Os/188Os value of 1.88 ± 0.01 and a MSWD of 0.05. The scatter (high MSWD) in the main-trend regression is due, in part, to TSR in reservoirs along the eastern margin of the basin. Excluding oils that have experienced TSR, the regression is significantly improved, yielding an age of 211 ± 21 Ma with a MSWD of 148. This revised age is consistent with some studies that have proposed Late Triassic as the beginning of Phosphoria oil generation and migration, and does not seem to reflect the source rock age (Permian) or the timing of re-migration (Late Cretaceous to Eocene) associated with the Laramide orogeny. The low precision of the revised regression (±21 Ma) is not unexpected for this oil family given the long duration of generation from a large geographic area of mature Phosphoria source rock, and the possible range in the initial 187 Os/ 188 Os values of the Meade Peak and Retort source units. Effects of re-migration may have contributed to the scatter, but thermal cracking and biodegradation likely have had minimal or no effect on the main-trend regression. The four Phosphoria-sourced oils from Torchlight and Lamb fields yield a precise Miocene age Re-Os isochron that may reflect the end of TSR in the reservoir due to cooling below a threshold temperature in the last 10 m.y. from uplift and erosion of overlying rocks. The mechanism for the formation of a Re-Os isotopic relationship in a family of crude oils may involve multiple steps in the petroleum generation process. Bitumen generation from the source rock kerogen may provide a reset of the isotopic chronometer, and incremental expulsion of oil over the duration of the oil window may provide some of the variation seen in 187 Re/ 188 Os values from an oil family.

Montana, Wyoming↗

USGS2015

Global patterns and environmental controls of perchlorate and nitrate co-occurrence in arid and semi-arid environments

Natural perchlorate (ClO 4 − ) is of increasing interest due to its wide-spread occurrence on Earth and Mars, yet little information exists on the relative abundance of ClO 4 − compared to other major anions, its stability, or long-term variations in production that may impact the observed distributions. Our objectives were to evaluate the occurrence and fate of ClO 4 − in groundwater and soils/caliche in arid and semi-arid environments (southwestern United States, southern Africa, United Arab Emirates, China, Antarctica, and Chile) and the relationship of ClO 4 − to the more well-studied atmospherically deposited anions NO 3 − and Cl − as a means to understand the prevalent processes that affect the accumulation of these species over various time scales. ClO 4 − is globally distributed in soil and groundwater in arid and semi-arid regions on Earth at concentrations ranging from 10 −1 to 10 6 μg/kg. Generally, the ClO 4 − concentration in these regions increases with aridity index, but also depends on the duration of arid conditions. In many arid and semi-arid areas, NO 3 − and ClO 4 − co-occur at molar ratios (NO 3 − /ClO 4 − ) that vary between ∼10 4 and 10 5 . We hypothesize that atmospheric deposition ratios are largely preserved in hyper-arid areas that support little or no biological activity (e.g. plants or bacteria), but can be altered in areas with more active biological processes including N 2 fixation, N mineralization, nitrification, denitrification, and microbial ClO 4 − reduction, as indicated in part by NO 3 − isotope data. In contrast, much larger ranges of Cl − /ClO 4 − and Cl − /NO 3 − ratios indicate Cl − varies independently from both ClO 4 − and NO 3 − . The general lack of correlation between Cl − and ClO 4 − or NO 3 − implies that Cl − is not a good indicator of co-deposition and should be used with care when interpreting oxyanion cycling in arid systems. The Atacama Desert appears to be unique compared to all other terrestrial locations having a NO 3 − /ClO 4 − molar ratio ∼10 3 . The relative enrichment in ClO 4 − compared to Cl − or NO 3 − and unique isotopic composition of Atacama ClO 4 − may reflect either additional in-situ production mechanism(s) or higher relative atmospheric production rates in that specific region or in the geological past. Elevated concentrations of ClO 4 − reported on the surface of Mars, and its enrichment with respect to Cl − and NO 3 − , could reveal important clues regarding the climatic, hydrologic, and potentially biologic evolution of that planet. Given the highly conserved ratio of NO 3 − /ClO 4 − in non-biologically active areas on Earth, it may be possible to use alterations of this ratio as a biomarker on Mars and for interpreting major anion cycles and processes on both Mars and Earth, particularly with respect to the less-conserved NO 3 − pool terrestrially.

Geochimica et Cosmochimica Acta↗

USGS2019

Arctic vegetation, temperature, and hydrology during Early Eocene transient global warming events

Early Eocene global climate was warmer than much of the Cenozoic and was punctuated by a series of transient warming events or ‘hyperthermals’ associated with carbon isotope excursions when temperature increased by 4–8° C. The Paleocene-Eocene Thermal Maximum (PETM, ~55 Ma) and Eocene Thermal Maximum 2 (ETM2, 53.5 Ma) hyperthermals were of short duration (< 200 kyr) and dramatically restructured terrestrial vegetation and mammalian faunas at mid-latitudes. Data on the character and magnitude of change in terrestrial vegetation and climate during and after the PETM and ETM2 at high northern latitudes, however, are limited to a small number of stratigraphically restricted records. The Arctic Coring Expedition (ACEX) marine sediment core from the Lomonosov Ridge in the Arctic Basin provides a stratigraphically expanded early Eocene record of Arctic terrestrial vegetation and climates. Using pollen/spore assemblages, palynofacies data, bioclimatic analyses (Nearest Living Relative, or NLR), and lipid biomarker paleothermometry, we present evidence for expansion of mesothermal (Mean Annual Temperatures 13–20˚C) forests to the Arctic during the PETM and ETM2. Our data indicate that PETM mean annual temperatures were ~1.8˚ - 3.5˚C warmer than the Late Paleocene. Mean winter temperatures in the PETM reached ≥6°C (~1.9˚C warmer than the late Paleocene), based on pollen-based bioclimatic reconstructions and the presence of palm and Bombacoideae pollen. Increased runoff of water and nutrients to the ocean during both hyperthermals resulted in greater salinity stratification and hypoxia/anoxia, based on marked increases in concentration of massive Amorphous Organic Matter (AOM) and dominance of low-salinity dinocysts. During the PETM recovery, taxodioid Cupressaceae-dominated swamp forests were important elements of the landscape, representing intermediate climate conditions between the early Eocene hyperthermals and background conditions of the late Paleocene.

Global and Planetary Change↗

USGS2021

Assessing the assumptions of classification agreement, accuracy, and predictable healing time of sea lamprey wounds on lake trout

Sea lamprey control in the Laurentian Great Lakes relies on records of sea lamprey wounds on lake trout to assess whether control efforts are supporting fisheries management targets. Wounding records have been maintained for 70 years under the assumption that they are a reliable and accurate reflection of sea lamprey damage inflicted on fish populations. However, two key assumptions underpinning the use of these data need thorough evaluation: sea lamprey wounds follow a predictable healing progression, and individuals classify wounds accurately and reliably. To assess these assumptions, we conducted a workshop where experienced professionals examined lake trout with known sea lamprey wounds. For most lake trout, pictures were taken at regular intervals during the healing process. Our evaluation of wound pictures found high variability in healing times and wound progressions that did not conform to the currently used classification system. Participants’ wound classification agreement and accuracy were low and misclassification rates were high for most wound types. Training provided during the workshops did not markedly improve these metrics. We assessed wound classification accuracy for the first time and found assumptions of high accuracy and agreement are not met. We recommend misclassification rates be incorporated into models using wound data, sensitivity analyses be conducted to assess the potential impact of wound misclassification on estimates of key metrics (such as sea lamprey-induced mortality for lake trout), and alternative biomarkers be developed to quantify wound status with greater accuracy and precision.

Laurentian Great Lakes↗

USGS2021

At-sea feeding ecology of parasitic lampreys

This paper synthesizes information on the at-sea ecology of ten anadromous lampreys, with emphasis on trophic ecology. The at-sea ecology of these lampreys concerns the juvenile stage, in which growth is most rapid. Anadromous lampreys can be categorized into four groups, based on feeding modalities: 1) scavenger (Caspian lamprey, Caspiomyzon wagneri ); 2) parasite-predator (Pacific lamprey, Entosphenus tridentatus ); 3) predators (western river lamprey, Lampetra ayresii ; European river lamprey, L. fluviatilis ; Arctic lamprey, Lethenteron camtschaticum ; pouched lamprey, Geotria australis ; and Argentinian pouched lamprey, G. macrostoma ); and 4) parasites (sea lamprey, Petromyzon marinus ; Chilean lamprey, Mordacia lapicida ; and short-headed lamprey, M. mordax ). This paper discusses direct evidence for lamprey feeding ecology, as observed through lamprey-induced wounds on hosts and prey, and lamprey attachments on hosts and prey; and indirect evidence for feeding ecology, via analyses of fatty acids, stable isotopes, contaminants, and bioenergetics modelling. A part of the information presented on feeding ecology is from landlocked sea lamprey, and in some instances this information can be generalizable to anadromous populations. For most anadromous lampreys, but particularly for Southern Hemisphere taxa, little is known about their feeding ecology at sea. Duration of the trophic marine phase and habitat use are still subjects of debate. Species identified as lamprey hosts can be demersal or pelagic, possibly reflecting marine habitat preferences. To unlock understanding of the marine phase of anadromous lampreys, direct evidence of feeding ecology should be coupled with natural (i.e., biomarkers) and artificial (e.g., biologgers) markers to identify habitat use, movement patterns and dispersal.

Journal of Great Lakes Research↗

USGS2016

Organic petrology and geochemistry of Eocene Suzak bituminous marl, north-central Afghanistan: Depositional environment and source rock potential

Organic geochemistry and petrology of Eocene Suzak bituminous marl outcrop samples from Madr village in north-central Afghanistan were characterized via an integrated analytical approach to evaluate depositional environment and source rock potential. Multiple proxies suggest the organic-rich (TOC ∼6 wt.%) bituminous marls are ‘immature’ for oil generation (e.g., vitrinite R o < 0.4%, T max < 425 °C, PI ≤ 0.05, C 29 ααα S/S + R ≤ 0.12, C 29 ββS/ββS+ααR ≤ 0.10, others), yet oil seeps are present at outcrop and live oil and abundant solid bitumen were observed via optical microscopy. Whole rock sulfur content is ∼2.3 wt.% whereas sulfur content is ∼5.0–5.6 wt.% in whole rock extracts with high polar components, consistent with extraction from S-rich Type IIs organic matter which could generate hydrocarbons at low thermal maturity. Low Fe-sulfide mineral abundance and comparison of Pr/Ph ratios between saturate and whole extracts suggest limited Fe concentration resulted in sulfurization of organic matter during early diagenesis. From these observations, we infer that a Type IIs kerogen in ‘immature’ bituminous marl at Madr could be generating high sulfur viscous oil which is seeping from outcrop. However, oil-seep samples were not collected for correlation studies. Aluminum-normalized trace element concentrations indicate enrichment of redox sensitive trace elements Mo, U and V and suggest anoxic-euxinic conditions during sediment deposition. The bulk of organic matter observed via optical microscopy is strongly fluorescent amorphous bituminite grading to lamalginite, possibly representing microbial mat facies. Short chain n- alkanes peak at C 14 –C 16 ( n- C 17 / n- C 29 > 1) indicating organic input from marine algae and/or bacterial biomass, and sterane/hopane ratios are low (0.12–0.14). Monoaromatic steroids are dominated by C 28 clearly indicating a marine setting. High gammacerane index values (∼0.9) are consistent with anoxia stratification and may indicate intermittent saline-hypersaline conditions. Stable C isotope ratios also suggest a marine depositional scenario for the Suzak samples, consistent with the presence of marine foraminifera including abundant planktic globigerinida (?) and rare benthic discocyclina (?) and nummulites (?). Biomarker 2α-methylhopane for photosynthetic cyanobacteria implies shallow photic zone deposition of Madr marls and 3β-methylhopane indicates presence of methanotrophic archaea in the microbial consortium. The data presented herein are consistent with deposition of Suzak bituminous marls in shallow stratified waters of a restricted marine basin associated with the southeastern incipient or proto-Paratethys. Geochemical proxies from Suzak rock extracts (S content, high polar content, C isotopes, normal (αααR) C 27–29 steranes, and C 29 /C 30 and C 26 /C 25 hopane ratios) are similar to extant data from Paleogene oils produced to the north in the Afghan-Tajik Basin. This observation may indicate laterally equivalent strata are effective source rocks as suggested by previous workers; however, further work is needed to strengthen oil-source correlations.

Marine and Petroleum Geology↗

USGS2004

Evidence of chromosomal damage in common eiders (Somateria mollissima) from the Baltic Sea

Common eiders nesting in the Baltic Sea are exposed to generally high levels of contaminants including potentially genotoxic polycyclic aromatic hydrocarbons and organochlorines. Blood samples were collected from eiders at eight sites in the Baltic Sea and two sites in the Beaufort Sea. DNA content variation was estimated using the flow cytometric method, and subsequently utilized as a biomarker of genetic damage. We observed no significant differences in genetic damage among populations within either the Baltic or Beaufort Seas. However, eider populations from the Baltic Sea had significantly elevated estimates of genetic damage compared to populations from the Beaufort Sea.

Baltic Sea, Beaufort Seas↗