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At least 253 records · Page 14Linked to original sources

USGS2015

Arctic biodiversity: Increasing richness accompanies shrinking refugia for a cold-associated tundra fauna

As ancestral biodiversity responded dynamically to late-Quaternary climate changes, so are extant organisms responding to the warming trajectory of the Anthropocene. Ecological predictive modeling, statistical hypothesis tests, and genetic signatures of demographic change can provide a powerful integrated toolset for investigating these biodiversity responses to climate change, and relative resiliency across different communities. Within the biotic province of Beringia, we analyzed specimen localities and DNA sequences from 28 mammal species associated with boreal forest and Arctic tundra biomes to assess both historical distributional and evolutionary responses and then forecasted future changes based on statistical assessments of past and present trajectories, and quantified distributional and demographic changes in relation to major management regions within the study area. We addressed three sets of hypotheses associated with aspects of methodological, biological, and socio-political importance by asking (1) what is the consistency among implications of predicted changes based on the results of both ecological and evolutionary analyses; (2) what are the ecological and evolutionary implications of climate change considering either total regional diversity or distinct communities associated with major biomes; and (3) are there differences in management implications across regions? Our results indicate increasing Arctic richness through time that highlights a potential state shift across the Arctic landscape. However, within distinct ecological communities, we found a predicted decline in the range and effective population size of tundra species into several discrete refugial areas. Consistency in results based on a combination of both ecological and evolutionary approaches demonstrates increased statistical confidence by applying cross-discipline comparative analyses to conservation of biodiversity, particularly considering variable management regimes that seek to balance sustainable ecosystems with other anthropogenic values. Refugial areas for cold-adapted taxa appear to be persistent across both warm and cold climate phases and although fragmented, constitute vital regions for persistence of Arctic mammals.

Ecosphere↗

USGS2011

Breccia-pipe uranium mining in northern Arizona: Estimate of resources and assessment of historical effects

About 1 million acres of Federal land in the Grand Canyon region of Arizona were temporarily withdrawn from new mining claims in July 2009 by the Secretary of the Interior because of concern that increased uranium mining could have negative impacts on the land, water, people, and wildlife. During a 2-year interval, a Federal team led by the Bureau of Land Management is evaluating the effects of withdrawing these lands for extended periods. As part of this team, the U.S. Geological Survey (USGS) conducted a series of short-term studies to examine the historical effects of breccia-pipe uranium mining in the region. The USGS studies provide estimates of uranium resources affected by the possible land withdrawal, examine the effects of previous breccia-pipe mining, summarize water-chemistry data for streams and springs, and investigate potential biological pathways of exposure to uranium and associated contaminants. This fact sheet summarizes results through December 2009 and outlines further research needs.

Arizona↗

USGS2003

An index of biological integrity (IBI) for Pacific Northwest rivers

The index of biotic integrity (IBI) is a commonly used measure of relative aquatic ecosystem condition; however, its application to coldwater rivers over large geographic areas has been limited. A seven-step process was used to construct and test an IBI applicable to fish assemblages in coldwater rivers throughout the U.S. portion of the Pacific Northwest. First, fish data from the region were compiled from previous studies and candidate metrics were selected. Second, reference conditions were estimated from historical reports and minimally disturbed reference sites in the region. Third, data from the upper Snake River basin were used to test metrics and develop the initial index. Fourth, candidate metrics were evaluated for their redundancy, variability, precision, and ability to reflect a wide range of conditions while distinguishing reference sites from disturbed sites. Fifth, the selected metrics were standardized by being scored continuously from 0 to 1 and then weighted as necessary to produce an IBI ranging from 0 to 100. The resulting index included 10 metrics: number of native coldwater species, number of age-classes of sculpins Cottus spp., percentage of sensitive native individuals, percentage of coldwater individuals, percentage of tolerant individuals, number of alien species, percentage of common carp Cyprinus carpio individuals, number of selected salmonid age-classes, catch per unit effort of coldwater individuals, and percentage of individuals with selected anomalies. Sixth, the IBI responses were tested with additional data sets from throughout the Pacific Northwest. Last, scores from two minimally disturbed reference rivers were evaluated for longitudinal gradients along the river continuum. The IBI responded to environmental disturbances and was spatially and temporally stable at over 150 sites in the Pacific Northwest. The results support its use across a large geographic area to describe the relative biological condition of coolwater and coldwater rivers with low species richness.

Transactions of the American Fisheries Society↗

USGS2014

Gully annealing by aeolian sediment: field and remote-sensing investigation of aeolian-hillslope-fluvial interactions, Colorado River corridor, Arizona, USA

Processes contributing to development of ephemeral gully channels are of great importance to landscapes worldwide, and particularly in dryland regions where soil loss and land degradation from gully erosion pose long-term land-management problems. Whereas gully formation has been relatively well studied, much less is known of the processes that anneal gullies and impede their growth. This study of gully annealing by aeolian sediment, spanning 95 km along the Colorado River corridor in Glen, Marble, and Grand Canyon, Arizona, USA, employed field and remote sensing observations, including digital topographic modelling. Results indicate that aeolian sediment activity can be locally effective at counteracting gully erosion. Gullies are less prevalent in areas where surficial sediment undergoes active aeolian transport, and have a greater tendency to terminate in active aeolian sand. Although not common, examples exist in the record of historical imagery of gullies that underwent infilling by aeolian sediment in past decades and evidently were effectively annealed. We thus provide new evidence for a potentially important interaction of aeolian–hillslope–fluvial processes, which could affect dryland regions substantially in ways not widely recognized. Moreover, because the biologic soil crust plays an important role in determining aeolian sand activity, and so in turn the extent of gully development, this study highlights a critical role of geomorphic–ecologic interactions in determining arid-landscape evolution.

Arizona↗

USGS2020

Restoration of rapids habitat in a Great Lakes connecting channel, the St. Marys River, Michigan

Aquatic habitat has been extensively altered throughout the Laurentian Great Lakes to increase navigation connectivity. In particular, the St. Marys River, a Great Lakes connecting channel, lost >50% of its historic rapids habitat over the past century. In 2016, the natural flow was restored to the Little Rapids area of the St. Marys River. The goal of our study was to evaluate physical and ecological responses to the restoration of the Little Rapids area. Extensive habitat and biological data were collected prior to restoration (2013 and 2014), and after restoration (2017 and 2018). Measured parameters included total suspended solids, current velocity, benthic macroinvertebrates, and larval, juvenile, and adult fishes. Total suspended solids stayed low (<4 mg/L) following restoration, with the exception of a single construction‐related event. Pre‐restoration data indicated that all measured velocities were below the target flow rate of 0.24 m/s, whereas 70% of the measured habitat was above the target flow post‐restoration. Abundance and richness of benthic macroinvertebrates were reduced following restoration (>90% reduction). We observed a 45% increase in richness of larval fish 2 years after restoration and a 131% increase in catch per unit effort. For adult fishes, the proportion of individuals with a preference for fast‐moving waters increased from 1.5 to 45% in the restored area, and from 7 to 15% upstream of the restored area; a similar response was observed for lithophilic spawners. The physical and biological conditions of the Little Rapids improved and resembled conditions typical of rapids habitat extent in other areas of the river and other systems.

Michigan↗

USGS2016

Water temperature profiles for reaches of the Raging River during summer baseflow, King County, western Washington, July 2015

Re-introducing wood into rivers where it was historically removed is one approach to improving habitat conditions in rivers of the Pacific Northwest. The Raging River drainage basin, which flows into the Snoqualmie River at Fall City, western Washington, was largely logged during the 20th century and wood was removed from its channel. To improve habitat conditions for several species of anadromous salmonids that spawn and rear in the Raging River, King County Department of Transportation placed untethered log jams in a 250-meter reach where wood was historically removed. The U.S. Geological Survey measured longitudinal profiles of near-streambed temperature during summer baseflow along 1,026 meters of channel upstream, downstream, and within the area of wood placements. These measurements were part of an effort by King County to monitor the geomorphic and biological responses to these wood placements. Near-streambed temperatures averaged over about 1-meter intervals were measured with a fiber‑optic distributed temperature sensor every 30 minutes for 7 days between July 7 and 13, 2015. Vertical temperature profiles were measured coincident with the longitudinal temperature profile at four locations at 0 centimeters (cm) (at the streambed), and 35 and 70 cm beneath the streambed to document thermal dynamics of the hyporheic zone and surface water in the study reach.

Washington↗

USGS2007

Sediment storage and severity of contamination in a shallow reservoir affected by historical lead and zinc mining

A combination of sediment-thickness measurement and bottom-sediment coring was used to investigate sediment storage and severity of contamination in Empire Lake (Kansas), a shallow reservoir affected by historical Pb and Zn mining. Cd, Pb, and Zn concentrations in the contaminated bottom sediment typically exceeded baseline concentrations by at least an order of magnitude. Moreover, the concentrations of Cd, Pb, and Zn typically far exceeded probable-effects guidelines, which represent the concentrations above which toxic biological effects usually or frequently occur. Despite a pre-1954 decrease in sediment concentrations likely related to the end of major mining activity upstream by about 1920, concentrations have remained relatively stable and persistently greater than the probable-effects guidelines for at least the last 50 years. Cesium-137 evidence from sediment cores indicated that most of the bottom sediment in the reservoir was deposited prior to 1954. Thus, the ability of the reservoir to store the contaminated sediment has declined over time. Because of the limited storage capacity, Empire Lake likely is a net source of contaminated sediment during high-inflow periods. The contaminated sediment that passes through, or originates from, Empire Lake will be deposited in downstream environments likely as far as Grand Lake O' the Cherokees (Oklahoma). ?? 2007 Springer-Verlag.

Environmental Geology↗

USGS2021

What can commercial fishery data in the Great Lakes reveal about juvenile sea lamprey (Petromyzon marinus) ecology and management?

The Laurentian Great Lakes of North America support a large and profitable freshwater fishery, but one continuously beset by parasitism from the invasive sea lamprey ( Petromyzon marinus ). Despite being the life stage that inflicts damage to the fishery, therefore necessitating a bi-national control program, our knowledge of juvenile sea lamprey ecology is poor and their response to control efforts are not assessed. Incidental capture of juvenile sea lamprey by commercial fishers is one means to collect data on this enigmatic life stage, and in Lake Huron such data have been collated since 1967. Here, we explore incidental captures of juvenile sea lamprey and their hosts from northern Lake Huron between 1987 and 2017 ( n = 33,246 observations) to address four objectives. Firstly, we document collection efforts by fishers to provide historical context to the dataset. Secondly, we pose and test a series of questions related to fishery encounter, host selection, growth, distribution, and sex ratio to highlight how these types of data can be informative regarding juvenile sea lamprey ecology. Results presented here could be used to develop biological hypotheses to be addressed in future work. Thirdly, we directly assessed whether juvenile sea lamprey capture data could be useful in corroborating trends observed in adult sea lamprey abundance and wounding, as well as in identifying abundance and wounding hotspots. Lastly, we summarize research and outreach efforts that have benefited from the capture of juvenile sea lamprey in recent years.

Great Lakes↗

USGS2013

Tracking animals in freshwater with electronic tags: past, present and future

Considerable technical developments over the past half century have enabled widespread application of electronic tags to the study of animals in the wild, including in freshwater environments. We review the constraints associated with freshwater telemetry and biologging and the technical developments relevant to their use. Technical constraints for tracking animals are often influenced by the characteristics of the animals being studied and the environment they inhabit. Collectively, they influence which and how technologies can be used and their relative effectiveness. Although radio telemetry has historically been the most commonly used technology in freshwater, passive integrated transponder (PIT) technology, acoustic telemetry and biologgers are becoming more popular. Most telemetry studies have focused on fish, although an increasing number have focused on other taxa, such as turtles, crustaceans and molluscs. Key technical developments for freshwater systems include: miniaturization of tags for tracking small-size life stages and species, fixed stations and coded tags for tracking large samples of animals over long distances and large temporal scales, inexpensive PIT systems that enable mass tagging to yield population- and community-level relevant sample sizes, incorporation of sensors into electronic tags, validation of tag attachment procedures with a focus on maintaining animal welfare, incorporation of different techniques (for example, genetics, stable isotopes) and peripheral technologies (for example, geographic information systems, hydroacoustics), development of novel analytical techniques, and extensive international collaboration. Innovations are still needed in tag miniaturization, data analysis and visualization, and in tracking animals over larger spatial scales (for example, pelagic areas of lakes) and in challenging environments (for example, large dynamic floodplain systems, under ice). There seems to be a particular need for adapting various global positioning system and satellite tagging approaches to freshwater. Electronic tagging provides a mechanism to collect detailed information from imperilled animals and species that have no direct economic value. Current and future advances will continue to improve our knowledge of the natural history of aquatic animals and ecological processes in freshwater ecosystems while facilitating evidence-based resource management and conservation.

Animal Biotelemetry↗

USGS2000

Genetic variation in the endangered Southwestern Willow Flycatcher

The Southwestern Willow Flycatcher ( Empidonax traillii extimus ) is an endangered Neotropical migrant that breeds in isolated remnants of dense riparian habitat in the southwestern United States. We estimated genetic variation at 20 breeding sites of the Southwestern Willow Flycatcher (290 individuals) using 38 amplified fragment length polymorphisms (AFLPs). Our results suggest that considerable genetic diversity exists within the subspecies and within local breeding sites. Statistical analyses of genetic variation revealed only slight, although significant, differentiation among breeding sites (Mantel's r = 0.0705, P < 0.0005; θ = 0.0816, 95% CI = 0.0608 to 0.1034; Φ ST = 0.0458, P < 0.001). UPGMA cluster analysis of the AFLP markers indicates that extensive gene flow has occurred among breeding sites. No one site stood out as being genetically unique or isolated. Therefore, the small level of genetic structure that we detected may not be biologically significant. Ongoing field studies are consistent with this conclusion. Of the banded birds that were resighted or recaptured in Arizona during the 1996 to 1998 breeding seasons, one-third moved between breeding sites and two-thirds were philopatric. Low differentiation may be the result of historically high rangewide diversity followed by recent geographic isolation of breeding sites, although observational data indicate that gene flow is a current phenomenon. Our data suggest that breeding groups of E. t. extimus act as a metapopulation.

The Auk↗

USGS2024

Factors affecting the density of Metabetaeus lohena (Decapoda: Alpheidae) at a high-density anchialine pool environment on the Kona Coast of the Island of Hawai‘i

Caridean shrimps (Caridea) are the dominant macroinvertebrates in most anchialine ecosystems. Hawaiian anchialine ecosystems, primarily composed of shallow surface pools connected to the ocean via hypogeal networks of cracks, tubes, and other voids, support 10 caridean shrimp species, including two federally listed as endangered. Little is known about most of these species. The objective of this study was to identify factors that affect the abundance and distribution of Metabetaeus lohena (Alpheidae), an uncommon species found across the Hawaiian Archipelago, at Kaloko-Honokōhau National Historical Park, Island of Hawai‘i. This park supports the highest concentration of anchialine pools in the State of Hawai‘i and is critical to protecting this threatened ecosystem. During 2017, we measured the density of M. lohena during nighttime surveys, as well as a variety of other biological, physical, and chemical parameters, in 130 pools. Metabetaeus lohena occupied 71.5% of the pools surveyed, with a mean density of 7.32 individuals/m 2 (95% CI = 5.14–9.49). Invasive fish and the endemic shrimp Halocaridina rubra (Atyidae) had the strongest effects on M. lohena density, with negative and positive relations, respectively. In the first estimate of M. lohena density at this scale, our data indicate that Kaloko-Honokōhau supports about 11,480 shrimp (95% CI = 8,054–14,906) in the pools surveyed. Furthermore, our models predict that this park could support an additional 1,695 individuals (95% CI = 955–3,008) for a population of about 13,175 shrimp if fish were removed from 19 pools in which M. lohena are absent.

Hawaii↗

USGS2015

The U.S. Geological Survey’s nonindigenous aquatic species database: over thirty years of tracking introduced aquatic species in the United States (and counting)

The U.S. Geological Survey’s Nonindigenous Aquatic Species (NAS) Database has tracked introductions of freshwater aquatic organisms in the United States for the past four decades. A website provides access to occurrence reports, distribution maps, and fact sheets for more than 1,000 species. The site also includes an on-line reporting system and an alert system for new occurrences. We provide an historical overview of the database, a description of its current capabilities and functionality, and a basic characterization of the data contained within the database.

Management of Biological Invasions↗

USGS2013

Water-quality, bed-sediment, and biological data (October 2010 through September 2011) and statistical summaries of data for streams in the Clark Fork basin, Montana

Water, bed sediment, and biota were sampled in streams from Butte to near Missoula, Montana, as part of a monitoring program in the upper Clark Fork basin of western Montana; additional water samples were collected from near Galen to near Missoula at select sites as part of a supplemental sampling program. The sampling program was conducted by the U.S. Geological Survey in cooperation with the U.S. Environmental Protection Agency to characterize aquatic resources in the Clark Fork basin, with emphasis on trace elements associated with historic mining and smelting activities. Sampling sites were located on the Clark Fork and selected tributaries. Water samples were collected periodically at 20 sites from October 2010 through September 2011. Bed-sediment and biota samples were collected once at 14 sites during August 2011. This report presents the analytical results and quality-assurance data for water-quality, bed-sediment, and biota samples collected at sites from October 2010 through September 2011. Water-quality data include concentrations of selected major ions, trace elements, and suspended sediment. Turbidity was analyzed for water samples collected at the four sites where seasonal daily values of turbidity were being determined. Daily values of suspended-sediment concentration and suspended-sediment discharge were determined for four sites. Bed-sediment data include trace-element concentrations in the fine-grained fraction. Biological data include trace-element concentrations in whole-body tissue of aquatic benthic insects. Statistical summaries of water-quality, bed-sediment, and biological data for sites in the upper Clark Fork basin are provided for the period of record since 1985.

Montana↗

USGS2023

Impact of dams on stream fish diversity: A different result

Impoundments can drastically change the physical and biological characteristics of fluvial systems. Changes in the physical characteristics, such as reductions in flow, increased sediment deposition, and increased surface area, often influence the system’s biological components, including plant, macroinvertebrate, and fish assemblages. In addition to having direct effects on impounded waterbodies, impoundments can also have wide-ranging effects at the watershed scale, particularly on upstream tributary streams. The purpose of this study was to assess the magnitude of these effects. We analyzed historical data from 26 streams distributed across five sub-basins in the Bluff Hills region of the Yazoo Basin, MS, USA. All five major tributary rivers in this region are impounded by large (11,240–26,143 hectares) reservoirs for flood control. We compared fish assemblages in streams located upstream and downstream of the four reservoirs using PERMANOVA, and contrary to expectations, we found no significant differences between the upstream and downstream assemblages. We explore several possible explanations for this discrepancy and suggest that stream assemblage response to impoundment may be nuanced by the regional species pool, the history of stream conditions in the watershed, and the resistance of the streams to periodic disturbances.

Mississippi↗

USGS2001

Seabird tissue archival and monitoring project: Protocol for collecting and banking seabird eggs

Archiving biological and environmental samples for retrospective analysis is a major component of systematic environmental monitoring. The long-term storage of carefully selected, representative samples in an environmental specimen bank is an important complement to the real-time monitoring of the environment. These archived samples permit: The use of subsequently developed innovative analytical technology that was not available at the time the samples were archived, for clear state-of-art identification an~ quantification of analytes of interest, The identification and quantification of analytes that are of subsequent interest but that were not of interest at the time the samples were archived, and The comparison of present and past analytical techniques and values, providing continued credibility of past analytical values, and allowing flexibility in environmental monitoring programs. Seabirds, including albatrosses, pelicans, cormorants, terns, kittiwakes, murres, guillemots, and puffins spend most of their lives at sea and have special adaptations for feeding in the marine environment, including the ability to excrete the excess salt obtained from ingesting seawater. Many species nest in dense groups (colonies) on steep, precipitous sea-cliffs and headlands. Seabirds are long-lived and slow to mature. They occupy high positions in the marine food web and are considered sensitive indicators for the marine environment (prey includes krill, small fish, and squid). Breeding success, timing of nesting, diets, and survival rates may provide early indications of changing environmental conditions (e.g., see Hatch et aI., 1993). Chemical analysis of seabird tissues, including egg contents, can be particularly useful in determining whether contaminants (and potential biological effects) associated with human industrial activities, such as offshore petroleum and mineral exploration and development, are accumulating in marine environments. The collection and archival of seabird tissues over a period of several years will be a resource for future analyses, providing samples that can be used to determine historical baseline contaminant levels.

Report↗

USGS2000

The AOU Conservation Committee Review of the biology, status, and management of Cape Sable Seaside Sparrows: Final report

The Cape Sable Seaside Sparrow ( Ammodramus maritimus mirabilis ) was listed as an original member of the federal list of endangered species in 1968. It is restricted to seasonally flooded prairies of extreme southern Florida and is disjunct from all other conspecific breeding populations (Kushlan et al 1982, McDonald 1988). Since the subspecies was described in 1919, its populations have been discovered and rediscovered, often only to disappear or decline to a handful of individuals (Werner and Woolfenden 1983, Kushlan and Bass 1983). Although the sparrow historically is known from six distinct areas, at present only two of these areas support populations numbering in the hundreds or low thousands of individuals. Debates swirl around the status of these remnant populations. The main controversy encompasses whether the sparrow, now largely restricted to Everglades National Park, is in jeopardy of global extinction and if so, what actions must be taken to prevent this from happening. In November 1998, a panel of scientists was assembled under the auspices of the Conservation Committee of the American Ornithologists' Union (AOU) to evaluate the scientific evidence relevant to this controversy. The Panel was charged with scrutinizing the evidence for the existence and probable causes of global population decline in this subspecies, evaluating proposed management actions, and suggesting further research necessary to manage the remaining populations to maximize their chances of long-term persistence. This document presents the conclusions of the Panel, which are based on our reading of the peer-reviewed and “gray” literature, interactions during a workshop held 9 to 11 February 1999 at Florida International University in Miami with researchers investigating the sparrow's biology, and site visits associated with the workshop. In addition, researchers provided the Panel with position papers summarizing their findings and conclusions prior to the workshop and provided information in response to specific questions following the workshop. Further information was obtained through public comment on an initial draft of this report.

The Auk↗

USGS2000

Habitat shift in invading species: Zebra and quagga mussel population characteristics on shallow soft substrates

Unexpected habitat innovations among invading species are illustrated by the expansion of dreissenid mussels across sedimentary environments in shallow water unlike the hard substrates where they are conventionally known. In this note, records of population characteristics of invading zebra (Dreissena polymorpha) and quagga (Dreissena bugensis) mussels from 1994 through 1998 are reported from shallow (less than 20 m) sedimentary habitats in western Lake Erie. Haphazard SCUBA collections of these invading species indicated that combined densities of zebra and quagga mussels ranged from 0 to 32,500 individuals per square meter between 1994 and 1998, with D. polymorpha comprising 75-100% of the assemblages. These mixed mussel populations, which were attached by byssal threads to each other and underlying sand-grain sediments, had size-frequency distributions that were typical of colonizing populations on hard substrates. Moreover, the presence of two mussel cohorts within the 1994 samples indicated that these species began expanding onto soft substrates not later than 1992, within 4 years of their initial invasion in western Lake Erie. Such historical data provide baselines for interpreting adaptive innovations, ecological interactions and habitat shifts among the two invading dreissenid mussel species in North America.

Biological Invasions↗

USGS2025

Forecasting sea otter recolonization: Insights from isotopic analysis of modern and zooarchaeological populations

Retrospective datasets offer essential context for conservation by revealing species’ ecological roles before industrial-era human impacts. We analysed isotopic compositions of pre-industrial and modern sea otters ( Enhydra lutris ) to reconstruct pre-extirpation ecology and offer insights for management. Our study focuses on southeast Alaska (SEAK), where sea otters are recolonizing, and northern Oregon, where translocations are being considered. We measured bulk bone collagen δ 13 C and δ 15 N values and essential amino acid δ 13 C values of extirpated sea otters from archaeological contexts, and bulk isotopic values from vibrissae of modern SEAK sea otters. We compare these results with published isotopic data of potential prey and additional archaeological datasets. In SEAK, our data show pre-industrial sea otter populations consumed infaunal bivalves and used soft-sediment (33%) and kelp forest habitats (67%), with sub-regional variation. We anticipate current populations will expand into this historical niche, and conflict with regional traditional/subsistence bivalve fisheries will persist. In northern Oregon, isotopic data from extirpated sea otters indicate past consumption of low trophic level invertebrates and a stronger reliance on kelp forests (88%) rather than soft-sediment habitats, highlighting the importance of kelp forests for future translocations. Our work exemplifies the value of historical ecology in informing conservation strategies for recovering species.

Alaska, Oregon↗