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At least 253 records · Page 14Linked to original sources

Analysis of groundwater response to tidal fluctuations, Operable Unit 1, Naval Base Kitsap, Keyport, Washington

Chlorinated volatile organic compounds have affected groundwater beneath a former 9-acre landfill at Operable Unit 1 (OU 1) of Naval Base Kitsap (NBK) Keyport, in Keyport, Washington. The landfill was the primary disposal area for domestic and industrial waste generated by NBK Keyport from the 1930s through 1973. Naval Facilities Engineering Command Northwest, in conjunction with the Environmental Protection Agency, Washington State Department of Ecology, and the Suquamish Tribe, is charged with collecting necessary data to monitor the contamination left in place and to ensure that the site does not pose a risk to human health or the environment. To support these efforts, refined information was collected on how groundwater levels throughout OU 1 respond to tidal fluctuations at this nearshore site adjacent to Liberty Bay, an inlet of Puget Sound. The information was analyzed to determine the optimal times during the semidiurnal and the neap-spring tidal cycles to sample groundwater for contaminants associated with fresh groundwater originating from OU 1. The optimal times for sampling are presumed to be when fresh groundwater flowing seaward is least impeded by elevated tides, and those times are related to predicted tide levels by tidal lags, the durations between low tides, and corresponding low groundwater levels. Discrete groundwater-specific conductance data also were collected to determine if a seawater/freshwater interface was present at any of the monitoring wells, and to inform decisions on the depth at which groundwater should be sampled in existing wells. Groundwater and surface-water levels were monitored at 19 monitoring wells and five adjacent surface-water sites. Specific conductance was monitored in each surface-water site. All time-series data parameters were collected every 15 minutes during a 4-week duration to measure how nearshore groundwater responds to tidal forcing. Time-series data were collected from July 12, 2018, to August 8, 2018, a period that included neap and spring tides. Vertical water-quality profiles were measured once in the screened interval of nine selected monitoring wells. The profiles included measurements at the top, middle, and bottom of each saturated screen interval. Tidal lag times were determined relative to tidal levels in Liberty Bay (rather than in the more nearby Tide Flats) because the predicted tides for the Poulsbo, Washington Station (National Oceanic and Atmospheric Administration [NOAA] Station 9445719) that are used to schedule groundwater sampling represent open-water conditions in the area; a sill that separates Dogfish Bay from the Tide Flats clearly affects the timing and magnitude of low-low tides in the Tide Flats. Calculated tidal lag times were divided into three general groups: (1) wells where groundwater responded to tidal level changes immediately, (2) wells where groundwater responded to tidal level changes within about 2–5 hours, and (3) wells where groundwater had minimal response to tidal level changes. Groundwater levels in the middle group of wells primarily responded in concert with tidal level changes in the Tide Flats rather than tidal level changes in Liberty Bay. An intended sampling depth refinement based on an assessment of transient seawater intrusion was not completed because of a failure to collect specific-conductance time-series data in select wells. Instead, discrete specific-conductance data from this and prior studies were evaluated to determine that the midpoint of well screens in OU 1 wells can be assumed to be a reasonably representative of undiluted groundwater. When sampling during spring (rather than neap) tides (as has generally been the standard practice at OU 1), the optimal time to sample the monitoring wells influenced by tides would be to add the tidal lags presented in this report to the time of the predicted low-low tide for Liberty Bay as measured at NOAA Station 9445719 at Poulsbo, Washington. Sampling schedules for the six wells where groundwater levels were only minimally influenced by tide changes should not be constrained by tidal conditions.

Washington↗

Ground-water resources in the lower Milliken--Sarco--Tulucay Creeks area, southeastern Napa County, California, 2000-2002

Ground water obtained from individual private wells is the sole source of water for about 4,800 residents living in the lower Milliken-Sarco-Tulucay Creeks area of southeastern Napa County. Increases in population and in irrigated vineyards during the past few decades have increased water demand. Estimated ground-water pumpage in 2000 was 5,350 acre-feet per year, an increase of about 80 percent since 1975. Water for agricultural irrigation is the dominant use, accounting for about 45 percent of the total. This increase in ground-water extraction has resulted in the general decline of ground-water levels. The purpose of this report is to present selected hydrologic data collected from 1975 to 2002 and to quantify changes in the ground-water system during the past 25 years. The study area lies in one of several prominent northwest-trending structural valleys in the North Coast Ranges. The area is underlain by alluvial deposits and volcanic rocks that exceed 1,000 feet in thickness in some places. Alluvial deposits and tuff beds in the volcanic sequence are the principal source of water to wells. The ground-water system is recharged by precipitation that infiltrates, in minor amounts, directly on the valley floor but mostly by infiltration in the Howell Mountains. Ground water moves laterally from the Howell Mountains into the study area. Although the area receives abundant winter precipitation in most years, nearly half of the precipitation is lost as surface runoff to the Napa River. Evapotranspiration also is high, accounting for nearly one-half of the total precipitation received. Because of the uncertainties in the estimates of precipitation, runoff, and evapotranspiration, a precise estimate of potential ground-water recharge cannot be made. Large changes in ground-water levels occurred between 1975 and 2001. In much of the western part of the area, water levels increased; but in the central and eastern parts, water levels declined by 25 to 125 feet. Ground-water extraction produced three large pumping depressions in the northern and east-central parts of the area. The general decline in ground-water levels is a result of increases in ground-water pumpage and possibly changes in infiltration capacity caused by changes in land use. Ground-water-level declines during 1960-2002 are evident in the records for 9 of 10 key monitoring wells. In five of these wells, water levels dropped by greater than 20 feet since the 1980s. The largest water-level declines have occurred since the mid 1970s, corresponding with a period of accelerated well construction and ground-water extraction. Analysis of samples from 15 wells indicates that the chemical quality of ground water in the study generally is acceptable. However, arsenic concentrations in samples from five wells exceed the U.S. Environmental Protection Agency primary drinking-water standard of 10 micrograms per liter, and iron concentrations in samples from five wells exceed the U.S. Environmental Protection Agency and the California Department of Health Services secondary drinking-water standard of 300 micrograms per liter. Water from 12 of 15 wells sampled contained concentrations of manganese that exceed the U.S. Environmental Protection Agency and the California Department of Health Services secondary drinking-water standard of 50 micrograms per liter. Two wells produced water that had boron in excess of the California Department of Health Services action level of 1 milligram per liter. Stable isotope, chlorofluorocarbon, and tritium data indicate that ground water in the area is a mixture of waters that recharged the aquifer system at different times. The presence of chlorofluorocarbons and tritium in water from the study area is evidence that modern recharge (post 1950) does take place. Water-temperature logs indicate that ground-water temperatures throughout the study area exceed 30?C at depths in excess of 600 feet. Further, water at

Water-Resources Investigations Report↗

Elk monitoring in Mount Rainier and Olympic national parks: 2008-2011 synthesis report

In 2008, the USGS collaborated with the NPS, the Muckleshoot and Puyallup Indian Tribes, and WDFW to develop a protocol tor monitor changes in abundance, population composition, and spatial distribution of elk on summer ranges in MORA and OLYM and winter ranges in OLYM. We developed double-observer sightability (DO-S) models that adjusted raw counts of elk as a function of factors influencing detection probabilities from the air, e.g. vegetation, elk group size, light, elk activity, and pilot experience. We plan to develop DO-S models for both MORA and OLYM summer ranges, but due to radiotelemetry collar failures in OLYM, we do not yet have enough data to model detection probabilities in OLYM. We analyzed results of the first 4 years of elk monitoring conducted under the new protocol from 2008-2011. Objectives of this first synthetic analysis are to: • update the DO-S model for MORA aerial survey results • examine abundance, composition, and distribution of elk trends in MORA summer ranges • establish a baseline of counts, population composition, and distribution of elk in OLYM summer ranges • examine trends in counts and distribution of elk in OLYM low-elevation winter ranges during early spring • determine environmental factors influencing abundance and composition of elk in selected MORA summer ranges and unadjusted counts of elk on selected OLYM winter ranges • review progress in developing a DO-S model for OLYM elk surveys • examine aerial survey operations and provide suggestions for future surveys. There was no trend in elk numbers in the N. Rainier TCA from 2008-2011; the trend in the S. Rainier TCA was not statistically significant but increased 3.3%/year. Maximum counts increased in the N. Rainier TCA ~6%/year. Maximum counts in the S. Rainier TCA increased at a rate of 17% annually. Due to failed radiocollars, weather, and other problems, we completed surveys in 2 of 5 OLYM summer range TCAs; no trend data are available. In OLYM winter ranges, we surveyed the Hoh TCA during early spring 2008-10 and of the S. Fork Hoh and Queets in 2008 and 2010. No surveys were done for early-spring counts in 2011 and 2012 due to high snowfall and lack of funding. Legacy early-spring surveys in OLYM since 1985 allowed us to assess trends in counts in the early-spring TCAs from 1985-2010. Counts of elk in the early-spring TCAs declined: 63% in the S. Fork Hoh, 18% in the Hoh, and 22% in the Queets Valley. We continue to develop and improve the DO-S model for application to OLYM summer surveys. In the next synthesis report, we will update findings with additional data following the 2015 field season, based on 8 years of survey results; it will be a more complete analysis of elk population trends.

Washington↗

Turning trash into treasure: Leveraging discarded filters for national-scale aquatic eDNA biomonitoring

Monitoring biodiversity changes over large spatiotemporal scales is critical for effective ecosystem conservation and management. This study investigates the potential of environmental DNA (eDNA) metabarcoding to enhance national-scale biomonitoring of freshwater diversity by leveraging discarded filters associated with routine water quality sampling from the U.S. Geological Survey's (USGS) National Water Quality Network (NWQN). We tested 375 samples from 103 NWQN sites for eDNA of native and non-native fish and found that 52% of the filters yielded fish eDNA for a total of 70 fish species detections. Of the filters that had fish eDNA present, an average of 3.7 species were detected. Benchmarking these results to USGS's Aquatic Gap Analysis Project (AGAP)—which includes both field-verified observations along with predictive models derived from fish capture and landscape predictor datasets—we found that eDNA from these filters detected only a fraction of the observed and expected fish diversity for these sites. Our results indicate that these discarded filters may not be sufficient for eDNA sampling of fish communities and posit that alternative filter types more appropriate for eDNA sampling may yield more valuable biomonitoring data. Nevertheless, we tested the efficacy of two novel approaches to facilitate large-scale biomonitoring. Though these filters did not yield adequate fish eDNA, the AGAP database provides a useful method for ground truthing fish species presence. The potential of integrating eDNA sampling into existing monitoring frameworks, which, when paired with more optimal eDNA methods, could be a cost-effective strategy to enhance biodiversity monitoring at large scales.

Aquaculture, Fish and Fisheries↗

Economic valuation of Landsat imagery

Landsat satellites have been operating since 1972, providing a continuous global record of the Earth’s land surface. The imagery is currently available at no cost through the U.S. Geological Survey (USGS). A previous USGS study estimated that Landsat imagery provided users an annual benefit of $ 2.19 billion in 2011, with U.S. users accounting for $ 1.79 billion of those benefits. That study, published in 2013, surveyed users in 2012 about Landsat imagery they retrieved in 2011. But since then, many changes have altered the demand for and supply of remotely sensed imagery and have made the analysis complex. This report updates these estimates, surveying users in 2018 about Landsat images they retrieved in 2017. The report discusses changes in the value per scene in 2017 when compared to 2011 and analyzes the potential consequences of charging fees. Landsat imagery has been available at no cost to the public since 2008, resulting in the distribution of millions of scenes each subsequent year. In addition, tens of thousands of Landsat users have registered with the USGS to access the data. Considering the number of Landsat data users worldwide and the broad range of Landsat data applications, it is difficult to quantify the cascading benefits to society provided by Landsat imagery. The value of Landsat imagery to these users was demonstrated by the substantial aggregated annual economic benefit from the imagery. Landsat imagery provided domestic and international users an estimated $ 3.45 billion in benefits in 2017 compared to $ 2.19 billion in 2011, with U.S. users accounting for $ 2.06 billion of those benefits. Much of the societal value of Landsat stems from the free and open data policy that allows users to access as much imagery as is necessary for their analysis at no cost. Charging even small fees would result in a loss of users and, most likely, a steep decline in the amount of imagery downloaded. It is reasonable that more than 50 percent of users will decline to pay. The consequences of charging for Landsat imagery would be felt by downstream users as well, through increased prices for value-added products as well as more intangible effects, such as reduced monitoring of environmental hazards.

Open-File Report↗

Characterization and statistical modeling of bacterial (Escherichia coli) outflows from watersheds that discharge into Southern Lake Michigan

Two watersheds in northwestern Indiana were selected for detailed monitoring of bacterially contaminated discharges (Escherichia coli) into Lake Michigan. A large watershed that drains an urbanized area with treatment plants that release raw sewage during storms discharges into Lake Michigan at the outlet of Burns Ditch. A small watershed drains part of the Great Marsh, a wetland complex that has been disrupted by ditching and limited residential development, at the outlet of Derby Ditch. Monitoring at the outlet of Burns Ditch in 1999 and 2000 indicated that E. coli concentrations vary over two orders of magnitude during storms. During one storm, sewage overflows caused concentrations to increase to more than 10,000 cfu/100 mL for several hours. Monitoring at Derby Ditch from 1997 to 2000 also indicated that E. coli concentrations increase during storms with the highest concentrations generally occurring during rising streamflow. Multiple regression analysis indicated that 60% of the variability in measured outflows of E. coli from Derby Ditch (n = 88) could be accounted for by a model that utilizes continuously measured rainfall, stream discharge, soil temperature and depth to water table in the Great Marsh. A similar analysis indicated that 90% of the variability in measured E. coli concentrations at the outlet of Burns Ditch (n = 43) during storms could be accounted for by a combination of continuously measured water-quality variables including nitrate and ammonium. These models, which utilize data that can be collected on a real-time basis, could form part of an Early Warning System for predicting beach closures.

Environmental Monitoring and Assessment↗

Relations of fish community composition to environmental variables in streams of central Nebraska, USA

Nine sites on streams in the Platte River Basin in central Nebraska were sampled as part of the US Geological Survey's National Water Quality Assessment Program during 1993-1994. A combination of canonical correspondence analysis and an index of biotic integrity determined from fish community data produced complementary evaluations of water quality conditions. Results of the canonical correspondence analysis were useful in showing which environmental variables were significant in differentiating fish communities at the nine sites. Five environmental variables were statistically significant in the analysis. Median specific conductance of water samples collected at a site accounted for the largest amount of variability in the species data. Although the percentage of the basin as cropland was not the first variable chosen in a forward selection process, it was the most strongly correlated with the first ordination axis. A rangeland- dominated site was distinguished from all others along that axis. Median orthophosphate concentration of samples collected in the year up to the time of fish sampling was most strongly correlated with the second ordination axis. The index of biotic integrity produced results that could be interpreted in terms of the relative water quality between sites. Sites draining nearly 100% cropland had the lowest scores for two individual metrics of the index of biotic integrity that were related to species tolerance. Effective monitoring of water quality could be achieved by coupling methods that address both the ecological components of fish communities and their statistical relationships to environmental factors.

Environmental Management↗

Development of the water-analysis screening tool used in the initial screening for the Pennsylvania State Water Plan update of 2008

The Water Resources Planning Act, Act 220 of 2002, requires the Pennsylvania Department of Environmental Protection (PaDEP) to update the State Water Plan by 2008. As part of this update, a water-analysis screening tool (WAST) was developed by the U.S. Geological Survey, in cooperation with the PaDEP, to provide assistance to the state in the identification of critical water-planning areas. The WAST has two primary inputs: net withdrawals and the initial screening criteria. A comprehensive water-use database that includes data from registration, estimation, discharge monitoring reports, mining data, and other sources was developed as input into the WAST. Water use in the following categories was estimated using water-use factors: residential, industrial, commercial, agriculture, and golf courses. A percentage of the 7-day, 10-year low flow is used for the initial screenings using the WAST to identify potential critical water-planning areas. This quantity, or initial screening criteria, is 50 percent of the 7-day, 10-year low flow for most streams. Using a basic water-balance equation, a screening indicator is calculated that indicates the potential influences of net withdrawals on aquatic-resource uses for watersheds generally larger than 15 square miles. Points representing outlets of these watersheds are colored-coded within the WAST to show the screening criteria for each watershed.

Open-File Report↗

Extracting temporal and spatial information from remotely sensed data for mapping wildlife habitat: Tucson

The research accomplished in this dissertation used both mathematical and statistical techniques to extract and evaluate measures of landscape temporal dynamics and spatial structure from remotely sensed data for the purpose of mapping wildlife habitat . By coupling the landscape measures gleaned from the remotely sensed data with various sets of animal sightings and population data , effective models of habitat preference were created. Measures of temporal dynamics of vegetation greenness as measured by National Oceanographic and Atmospheric Administration’s Advanced Very High Resolution Radiometer (AVHRR) satellite were used to effectively characterize and map season specific habitat of the Sonoran pronghorn antelope, as well as produce preliminary models of potential yellow-billed cuckoo habitat in Arizona. Various measures that capture different aspects of the temporal dynamics of the landscape were derived from AVHRR Normalized Difference Vegetation Index composite data using three main classes of calculations: basic statistics, standardized principal components analysis, and Fourier analysis. Pronghorn habitat models based on the AVHRR measures correspond visually and statistically to GIS-based models produced using data that represent detailed knowledge of ground-condition. Measures of temporal dynamics also revealed statistically significant correlations with annual estimates of elk population in selected Arizona Game Management Units, suggesting elk respond to regional environmental changes that can be measured using satellite data . Such relationships, once verified and established, can be used to help indirectly monitor the population. Measures of landscape spatial structure derived from IKONOS high spatial resolution (1-m) satellite data using geostatistics effectively map details of Sonoran pronghorn antelope habitat . Local estimates of the nugget, sill, and range variogram parameters calculated within 25 x 25-meter image windows describe the spatial autocorrelation of the image, permitting classification of all pixels into coherent units whose signature graphs exhibit a classic variogram shape. The variogram parameters captured in these signatures have been shown in previous studies to discriminate between different species-specific vegetation associations. The synoptic view of the landscape provided by satellite data can inform resource management efforts. The ability to characterize the spatial structure and temporal dynamics of habitat using repeatable remote sensing data allows closer monitoring of the relationship between a species and its landscape.

Arizona↗

Spatial and temporal trends in selenium in the upper Blackfoot River watershed, southeastern Idaho, 2001–16

Phosphate mining in southeastern Idaho has been an important economic driver for the region and State for over 100 years, but weathering of mining waste rock has also released selenium into the Blackfoot River. This report analyzes and presents data from three separate but complementary studies monitoring selenium in streams in the region. The U.S. Geological Survey (USGS), in cooperation with the Bureau of Land Management, has been collecting streamflow and water-quality samples year-round on the Blackfoot River above reservoir near Henry, Idaho, (USGS streamgage 13063000) since 2001. Over the same period, the Idaho Department of Environmental Quality (IDEQ) has collected streamflow and water-quality samples from the Blackfoot River and tributaries during spring runoff. Data collected from 2001 to 2012 during these two studies were analyzed previously. This report extends the analysis using new data collected through 2016. This report also presents the results of a joint USGS and IDEQ seepage study conducted in June 2016 in the Blackfoot River near Dry Valley. Although limited in scope, this study explored the hypothesis that unaccounted selenium loading (loading in excess of tributary inputs) in this reach could be caused by groundwater inflow. USGS dissolved selenium concentration data from streamgage 13063000 on the Blackfoot River and IDEQ data from the mainstem and mining-affected tributaries are highest shortly after peak runoff and correlate with streamflow magnitude. Although earlier analyses indicated increasing selenium concentrations from 2001 to 2012, this study shows that runoff and baseflow dissolved selenium concentrations increased and then decreased during 2001–16. High median runoff concentrations from 2005 through 2011 are associated with high snowpack and streamflow. This result suggests that more snowmelt moving through selenium-bearing waste rock leads to increased instream concentrations. The time lag between peak runoff and then peak selenium concentrations suggests that selenium mobilization may occur as snowmelt percolates through waste rock rather than by faster surface runoff. However, variability in local snow accumulation and snowmelt conditions likely affects interannual variability in selenium concentrations in the mainstem Blackfoot River and tributaries. In contrast to runoff selenium concentrations, median baseflow (August to October) dissolved selenium concentrations were highest from 2009 to 2013. Aquatic plant senescence and release of selenium is an unlikely explanation for this trend because plants are still growing during this time of year. In addition, this trend is observed during and shortly after the observed period of high snowpack. Thus, increased baseflow selenium concentrations suggest that increased selenium loading to alluvial groundwater may occur during periods of high snowmelt and manifest in later years as higher instream concentrations during baseflows when the majority of streamflow is attributable to groundwater gains. Runoff-period streamflow and selenium loads were calculated for the tributaries and mainstem Blackfoot River. Selenium loads vary from year to year with mainstem loads greater than the total tributary contributions in some years and less than tributary contributions in other years. In general, East Mill Creek usually accounted for the largest proportion of the total Blackfoot River load, and unaccounted loads (loads in excess of tributary inputs) often occurred in the vicinity of Spring Creek and Dry Valley. The latter observation led the USGS and IDEQ to conduct a seepage study to further investigate groundwater and selenium loading to the Blackfoot River near Dry Valley. The seepage study results show consistent albeit small unaccounted increases in streamflow and dissolved selenium load in the Blackfoot River near Dry Valley. Field observation of a spring to the north of the river and independent groundwater monitoring data from Dry Valley to the south of the river suggest that alluvial groundwater may discharge to the river from both sides. However, the small unaccounted selenium load measured in the June 2016 study relative to loads measured during runoff suggest that groundwater loading in this reach may occur primarily during runoff. An improved understanding of alluvial groundwater extent, gradient, hydraulic conductivity, and quality would aid in interpreting unaccounted gains and losses in selenium loads in the Blackfoot River. Finally, State of Idaho selenium water-quality criteria have recently shifted to a hierarchical fish tissue and water concentration scheme. This report summarizes existing fish tissue and water-quality data in the mainstem and offers considerations for future selenium monitoring in the Blackfoot River.

Idaho↗

Continuous nitrate monitoring in groundwater and potential contribution to surface-water nitrogen loads in Mason County, Illinois

Illinois has some of the most productive farmland in the country. The use of fertilizers to improve crop production has increased, which has resulted in an increase in the concentration of nitrogen in many streams and aquifers. The U.S. Geological Survey, in cooperation with the Illinois Environmental Protection Agency, is continuously monitoring (one reading every 15 minutes) the concentration of nitrate plus nitrite, as nitrogen, in a groundwater well and assessing the potential contribution to surface-water nitrogen loads. Continuous monitoring of the nitrate concentration allows for the collection of a larger dataset in comparison to periodic or event-based sampling. This fact sheet describes the data collection methods, describes the overall experimental design, and displays data collected for the study. The analysis of continuous data improves understanding of the fate and transport of nitrate.

Illinois↗

An evaluation of traditional and emerging remote sensing technologies for the detection of fugitive contamination at selected Superfund hazardous waste sites

This report represents a remote sensing research effort conducted by the U.S. Geological Survey in cooperation with the U.S. Environmental Protection Agency (EPA) for the EPA Office of Inspector General. The objective of this investigation was to explore the efficacy of remote sensing as a technology for postclosure monitoring of hazardous waste sites as defined under the Comprehensive Environmental Response Compensation and Liability Act of 1980 (Public Law 96-510, 42 U.S.C. §9601 et seq.), also known as \"Superfund.\" Five delisted Superfund sites in Maryland and Virginia were imaged with a hyperspectral sensor and visited for collection of soil, water, and spectral samples and inspection of general site conditions. This report evaluates traditional and hyperspectral imagery and field spectroscopic measurement techniques in the characterization and analysis of fugitive (anthropogenic, uncontrolled) contamination at previously remediated hazardous waste disposal sites.

Open-File Report↗

Evaluation of stream flow effects on smolt survival in the Yakima River Basin, Washington, 2012-2014

The influence of stream flow on survival of emigrating juvenile (smolts) Pacific salmon Oncorhynchus spp. and steelhead trout O. mykiss is of key management interest. However, few studies have quantified flow effects on smolt migration survival, and available information does not indicate a consistent flow-survival relationship within the typical range of flows under management control. It is hypothesized that smolt migration and dam passage survival are positively correlated with stream flow because higher flows increase migration rates, potentially reducing exposure to predation, and reduce delays in reservoirs. However, available empirical data are somewhat equivocal concerning the influence of flow on smolt survival and the underlying mechanisms driving this relationship. Stream flow effects on survival of emigrating anadromous salmonids in the Yakima Basin have concerned water users and fisheries managers for over 20 years, and previous studies do not provide sufficient information at the resolution necessary to inform water operations, which typically occur on a small spatiotemporal scale. Using a series of controlled flow releases from 2012-2014, combined with radio telemetry, we quantified the relationship between flow and smolt survival from Roza Dam 208 km downstream to the Yakima River mouth, as well as for specific routes of passage at Roza Dam. A novel multistate mark-recapture model accounted for weekly variation in flow conditions experienced by radio-tagged fish. Groups of fish were captured and radio-tagged at Roza Dam and released at two locations, upstream at the Big Pines Campground (river kilometer [rkm] 211) and downstream in the Roza Dam tailrace (rkm 208). A total of 904 hatchery-origin yearling Chinook salmon O. tshawytscha were captured in the Roza Dam fish bypass, radio-tagged and released upstream of Roza Dam. Two hundred thirty seven fish were released in the tailrace of Roza Dam. Fish released in the tailrace of Roza Dam were tagged concurrently with fish released upstream of the dam using identical tagging methods. Tagging and release events were conducted to target a range of flow conditions indicative of flows observed during the typical migration period (March-May) for juvenile spring Chinook salmon in the Yakima River. Three, five and four separate upstream releases were conducted in 2012, 2013, and 2014 respectively, and at least 43 fish were released alive on each occasion. The release sample sizes in 2014 were much larger (~130) compared to previous years for the purpose of increasing precision of survival estimates across the range of flows tested. Migration movements of radio-tagged spring Chinook salmon smolts were monitored with an array of telemetry receiver stations (fixed sites) that extended 208 rkm downstream from the forebay of Roza Dam to the mouth of the Yakima River. Fixed monitoring sites included the forebay of Roza Dam (rkm 208), the tailrace of Roza Dam (rkm 207.9), the mouth of Wenas Creek (rkm 199.2), the mouth of the Naches River (two sites, rkm 189.4), Sunnyside Dam (two sites, rkm 169.1), Prosser Dam (rkm 77.2), and the mouth of the Yakima River (two sites, rkm2 3). This array segregated the study area into four discrete reaches in which survival of tagged fish was estimated. Aerial and underwater antennas were also used to monitor tagged fish at Roza Dam. Aerial antennas were located in the forebay, on the East gate, on the West gate, and in the tailrace of Roza Dam. Underwater antennas were located in the fish bypass, upstream of the East gate, and upstream of the West gate to collect route-specific passage data for tagged fish. Additional years of data collection and analysis could alter or improve our understanding of the influence of flow and other environmental factors on smolt survival in the Yakima River. Nevertheless, during 2012-2014, yearling hatchery Chinook salmon smolt emigration survival was significantly associated with stream flow in the

Report↗

Native Prairie Adaptive Management: a multi region adaptive approach to invasive plant management on Fish and Wildlife Service owned native prairies

Much of the native prairie managed by the U.S. Fish and Wildlife Service (FWS) in the Prairie Pothole Region (PPR) of the northern Great Plains is extensively invaded by the introduced cool-season grasses, smooth brome ( Bromus inermis ) and Kentucky bluegrass ( Poa pratensis ). Management to suppress these invasive plants has had poor to inconsistent success. The central challenge to managers is selecting appropriate management actions in the face of biological and environmental uncertainties. In partnership with the FWS, the U.S. Geological Survey (USGS) developed an adaptive decision support framework to assist managers in selecting management actions under uncertainty and maximizing learning from management outcomes. This joint partnership is known as the Native Prairie Adaptive Management (NPAM) initiative. The NPAM decision framework is built around practical constraints faced by FWS refuge managers and includes identification of the management objective and strategies, analysis of uncertainty and construction of competing decision models, monitoring, and mechanisms for model feedback and decision selection. Nineteen FWS field stations, spanning four states of the PPR, have participated in the initiative. These FWS cooperators share a common management objective, available management strategies, and biological uncertainties. Though the scope is broad, the initiative interfaces with individual land managers who provide site-specific information and receive updated decision guidance that incorporates understanding gained from the collective experience of all cooperators. We describe the technical components of this approach, how the components integrate and inform each other, how data feedback from individual cooperators serves to reduce uncertainty across the whole region, and how a successful adaptive management project is coordinated and maintained on a large scale. During an initial scoping workshop, FWS cooperators developed a consensus management objective: increase the composition of native grasses and forbs on native sod while minimizing cost. Cooperators agreed that decision guidance should be provided annually and should account for local, real-time vegetation conditions observed on the ground. Over the course of development, two prototypes of the decision framework were considered. The final framework recognized four alternative actions that managers could take in any given year: (1) Graze—targeted use of grazing ungulates to achieve defoliation, (2) Burn—application of prescribed fire as the single form of defoliation, (3) Burn/Graze—a combination treatment, and (4) Rest—no action. The study area included northern mixed-grass and tallgrass prairie. Native vegetation in mixed–grass prairie has a strong cool-season component and thus the dominant native species have a phenology similar to that of smooth brome and Kentucky bluegrass, making management of those species challenging. In contrast, tallgrass prairie has a strong warm-season native component, leading to an existence of cool-season windows, periods of time in the fall and spring when cool‐season invasive grass species are actively growing and vulnerable to damage via select management actions, but warm‐season grass species are not active and are thus less susceptible to damage via the same actions. This dichotomy between prairie types necessitated the development of separate but parallel decision support systems for mixed-grass and tallgrass biomes. Management units are parcels of native prairie that receive a single management treatment at any one time over their entire extent. At any particular time, the vegetation state of each management unit is characterized by the amount of cover of native grasses and forbs and the type of invasive grass that is dominant. In addition, each unit has a defoliation state which reflects the number of years since the last defoliation event and an index to how intensively the unit was managed during the previous 7 years. State-transition models are used to predict the state of a management unit in year t+1 from its state in year t and a prescribed management action that was applied between the two monitoring events. Alternative models are built around key uncertainties that make choice of a management action difficult. Three uncertainties revolve around whether the effect of management actions depends on (1) type of dominant invader, (2) past defoliation history, and (3) level of invasion. Two additional uncertainties are considered when choosing a management action for tallgrass units: (4) the effectiveness of grazing within the cool-season window as a surrogate for burning when smooth brome is the dominant invader, and (5) the differential effect of active management outside the window as compared to rest. Because data on the probability of transitioning from one state to another under the various models were lacking, expert opinion and elicitation were used to parameterize the models. In addition, cooperators participated in elicitation exercises to extract their beliefs regarding the value of having native prairie compared to the cost of achieving it. Quantifying the subjective expression of utility in this way allowed for mathematical representation of the management objective into an objective function. By maximizing the objective function, cumulative utility is maximized, leading to the identification of a sequence of decisions that will achieve the management objective. The NPAM system adopted a vegetation monitoring protocol that was rapid, inexpensive, and familiar to many of the cooperators. The monitoring protocol served three purposes: (1) determining current vegetation and defoliation states of each unit, (2) evaluating progress toward the management objective, and (3) assessing predictive performance of the alternative models. The management year runs from September 1 to August 31. Management can be applied anytime during that period and monitoring takes places from late June to mid-August. Cooperators enter vegetation data and management information into a centralized database by August 25 of each year. Given the current state of the system (vegetation and defoliation states) and the current understanding of the system (or the belief state), identifying the current best management decision is a matter of looking up the combination (that is, system state and belief state) in the appropriate (mixed-grass or tallgrass) optimal decision table. Given complete uncertainty at the outset of decision-making, initial assignment of equal belief weights to each model was believed reasonable. The decisions in the optimal decision table that correspond to the current belief state constitute the current optimal decision policy. By August 31 of each year, individual cooperators are provided with a recommended management action for each of their management units for the upcoming management year. Upon receiving the management recommendations for their units, managers consider the recommendation, along with other relevant information, and at some point during the year one of the management alternatives is carried out. This iterative cycle of making and implementing a management decision, predicting the response, monitoring the outcome, comparing predicted and observed outcomes, updating model weights, and recommending a management action for the next cycle is expected to result in an accumulation of weight on a representative model of system dynamics, thereby increasing understanding needed to effectively manage native prairies. The NPAM system is now entering its second full year of complete operation, and represents one of only a few fully implemented applications of adaptive management within the U.S. Fish and Wildlife Service. NPAM is truly unique in that it originated from the ground up as a result of the leadership and steadfastness of several refuge biologists and managers confronted with a common problem. These biologists recognized that working together across a large landscape presented perhaps the best opportunity for halting and reversing the invasion of native grasslands by non-native cool-season grasses. Importantly, the NPAM system encapsulates the collective thinking and experience of tens if not hundreds of individuals who have battled this vexing problem for much of their careers. The NPAM initiative is rooted in principles of adaptive management, thereby affording the opportunity for grassland managers to pursue management objectives while acquiring information to reduce uncertainty and improve future management. The project introduced a number of technical innovations that will serve as templates for conservation efforts throughout and beyond the U.S. Fish and Wildlife Service. First, NPAM is an on-the-ground implementation of active adaptive management—possibly the first of its kind in conservation management—in which recommended management actions result from a prospective analysis of future learning (Williams, 1996). Second, by the use of dynamic optimization, NPAM demonstrates how decisions can be made that take into account possible future transitions of the system. Third, NPAM demonstrates how models of partial controllability are an effective means of accommodating unpredictable circumstances that cause a manager to follow a different course than was intended. Finally, the database developed for NPAM is an unparalleled system that enables the rapid integration of data from the field for the generation of ‘just-in-time’ management recommendations. In all, NPAM provides an example of how a science-management partnership can be forged to achieve large-scale conservation objectives.

Minnesota;Montana;North Dakota;South Dakota↗

Trends in the quality of water in New Jersey streams, water years 1998-2007

Trends were determined in flow-adjusted values of selected water-quality characteristics measured year-round during water years 1998-2007 (October 1, 1997, through September 30, 2007) at 70 stations on New Jersey streams. Water-quality characteristics included in the analysis are dissolved oxygen, pH, total dissolved solids, total phosphorus, total organic nitrogen plus ammonia, and dissolved nitrate plus nitrite. In addition, trend tests also were conducted on measurements of dissolved oxygen made only during the growing season, April to September. Nearly all the water-quality data analyzed were collected by the New Jersey Department of Environmental Protection and the U.S. Geological Survey as part of the New Jersey Department of Environmental Protection Ambient Surface-Water Quality Monitoring Network. Monotonic trends in flow-adjusted values of water quality were determined by use of procedures in the ESTREND computer program. A 0.05 level of significance was selected to indicate a trend. Results of tests were not reported if there were an insufficient number of measurements or insufficient number of detected concentrations, or if the results of the tests were affected by a change in data-collection methods. Trends in values of dissolved oxygen, pH, and total dissolved solids were identified using the Seasonal Kendall test. Trends or no trends in year-round concentrations of dissolved oxygen were determined for 66 stations; decreases at 4 stations and increases at 0 stations were identified. Trends or no trends in growing-season concentrations of dissolved oxygen were determined for 65 stations; decreases at 4 stations and increases at 4 stations were identified. Tests of pH values determined trends or no trends at 26 stations; decreases at 2 stations and increases at 3 stations were identified. Trends or no trends in total dissolved solids were reported for all 70 stations; decreases at 0 stations and increases at 24 stations were identified. Trends in total phosphorus, total organic nitrogen plus ammonia, and dissolved nitrate plus nitrite were identified by use of Tobit regression. Two sets of trend tests were conducted-one set with all measurements and a second set with all measurements except the most extreme outlier if one could be identified. The result of the test with all measurements is reported if the results of the two tests are equivalent. The result of the test without the outlier is reported if the results of the two tests are not equivalent. Trends or no trends in total phosphorus were determined for 69 stations. Decreases at 12 stations and increases at 5 stations were identified. Of the five stations on the Delaware River included in this study, decreases in concentration were identified at four. Trends or no trends in total organic nitrogen plus ammonia were determined for 69 stations. Decreases and increases in concentrations were identified at six and nine stations, respectively. Trends or no trends in dissolved nitrate plus nitrite were determined for 66 stations. Decreases and increases in concentration were identified at 4 and 19 stations, respectively.

Scientific Investigations Report↗

Atlantic Salmon (Salmo salar) climate scenario planning pilot report

Scenario planning is a structured process that embraces uncertainty and explores plausible alternative future conditions under different assumptions to help manage risk and prioritize actions ( Schwartz 1996, Peterson et al . 2003). It has been used by a variety of organizations to explore and help prepare for the future, lends itself well to exploring the uncertainty surrounding changing environmental conditions, and is widely applicable to natural resource management issues. The conservation and management of protected resources for example, can be particularly challenging when the rate and magnitude of climate-related changes, and the response of species to those changes, are uncertain (NMFS 2016). The structured process of scenario planning can help resource managers navigate through potentially paralyzing uncertainties, manage risk, and evaluate/prioritize management actions associated with adapting to, and managing for, climate change (Moore et al . 2013). Atlantic salmon ( Salmo salar ) is a species highly vulnerable to climate change in the Northeast Atlantic (Hare et al . 2016a). Based on this and the above reasons, a scenario planning initiative was piloted by NOAA Fisheries to explore what the agency can do to improve U.S.Atlantic salmon population resilience to changing climate conditions in riverine, estuarine(transition), and marine environments across its current range (U.S. headwaters to Greenland). Project objectives were: 1) to better understand the challenges of managing Atlantic salmon in a changing climate; 2) to identify and discuss potential management actions and research activities that can be undertaken to increase our understanding of the drivers of Atlantic salmon productivity and resilience; 3) to increase collaborations and coordination related to the speciesrecovery; and 4) to explore how scenario planning can be used to support decisions. Outcomes from this initiative included, but were not limited to, the identification of high priority research and management actions to further collaborations and efforts to recover this species. The identified high priority actions were those that could be undertaken in the near-term(1-5 years) using current resources and in consideration of potential future conditions. Examples of identified actions by habitat (not in order of priority) included: 1) synthesize and refine range-wide life stage specific quantitative environmental thresholds for temperature, flow, etc.; 2) assess watershed habitat productivity; 3) assess forage fish and survival connection and options for marine migration monitoring; and 4) reduce dam-associated indirect estuarine mortality rate. In addition, a number of high priority climate-related actions were included in the revised Atlantic Salmon Recovery Plan (USFWS and NMFS 2019, Appendix 16) and at least two newly NOAA Fisheries funded projects are now underway (1. conduct range-wide habitat analysis and synthesize life stage specific quantitative thresholds and 2. identify locations of cold water refugia under a changing climate). This is the first use of the scenario planning process (NPS 2013) by NOAA Fisheries. This report documents an important example of applying scenario planning to marine species/environments and may serve as a useful reference for other case studies.

Atlantic Ocean↗

Nutrients and Suspended Solids in Surface Waters of the Upper Illinois River Basin in Illinois, Indiana, and Wisconsin, 1978-97

A retrospective analysis of selected data on nutrients and suspended solids in surface waters of the upper Illinois River Basin was done as part of the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Program. Approximately 91 percent of the upper Illinois River Basin is drained by three principal rivers: the Kankakee (and its major tributary, the Iroquois), the Des Plaines, and the Fox. The data analyzed were collected by the Illinois Environmental Protection Agency (IEPA), which operates 39 monitoring sites in the study area as part of its Ambient Water-Quality Monitoring Network, and included analyses for total ammonia nitrogen, total nitriteplus- nitrate nitrogen, total ammonia-plus-organic (total Kjeldahl) nitrogen, dissolved and total phosphorus, and total suspended solids and volatile solids. Nutrient and suspended-sediment data collected by the USGS as part of the upper Illinois River Basin NAWQA pilot study from 1987-90 were compared to IEPA data. For the 1978-97 period, in general, nutrient concentrations, with the exception of nitrate, were highest at streams in the urban areas of the Des Plaines River Basin. Streams in the Kankakee and Fox River Basins generally had lower concentrations, although the data indicate that concentrations increased in a downstream direction in these basins. These spatial patterns in nutrient concentrations correspond closely with land use in the respective basins. The elevated concentrations of ammonia and phosphorus in the urbanized Des Plaines River Basin, with respect to other sites in the study area, indicate that municipal- and industrial- waste discharges into streams of the basin increase concentrations of these nutrients in the receiving streams. In contrast, nitrate concentrations were highest in agricultural areas. Relatively large ratios of nitrogen to phosphorus and nitrate to ammonia are characteristic of agricultural drainage. On the other hand, urban tributaries were characterized by smaller ratios of nitrogen to phosphorus and nitrate to ammonia. The apparent, but nonuniform, correspondence of nutrient concentrations to urban and agricultural land use in the upper Illinois River Basin was generally consistent with findings in other river basins. A seasonal pattern of nutrient concentrations characterized by high concentrations in the winter months, depletion during the spring and summer, and minimum levels in the late summer or early fall was observed in some of the data from the upper Illinois River Basin. Monthly median concentrations of total ammonia nitrogen and nitrite plus nitrate nitrogen were at minimum levels from July through October, whereas phosphorus concentrations did not display a strong seasonal trend. The net result of nutrient inputs and transport through the river system were elevated nutrient concentrations at the most-downstream site in the study area on the Illinois River. At this site, the median concentrations of nitrate, total phosphorus, and orthophosphate were among the highest in the Mississippi River Basin, and the concentration of ammonia was the highest. Suspended-solids concentrations do not indicate any particularly strong spatial patterns among major river basins in the study area. Instead, higher suspended-solids concentrations are observed at sites draining areas of low-permeability, easily eroded soils in agricultural and urban areas alike. Seasonal variation of suspended solids were consistent at sites across the study area. In general, suspended- solids concentrations were highest in the summer and lowest in the winter. The increase during the summer can be attributed to higher streamflow and the associated increase in runoff and transport, as well as increased phytoplankton growth. Because of the high nutrient concentrations in the upper Illinois River Basin, annual loads and yields also were relatively large; however, yields of phosphorus from the Fox and Kankakee River Basins were not unusually high. The ma

Water-Resources Investigations Report↗

Reconnaissance of surface-water quality in the North Platte Natural Resources District, western Nebraska, 1993

In 1993, the U.S. Geological Survey and the North Platte Natural Resources District began a 3-year study to determine the geohydrology and water quality of the North Platte River alluvial aquifer near Oshkosh, Garden County, Nebraska. The objectives of the study were to determine the geohydrologic properties of the North Platte River alluvial aquifer, to establish a well network for long- term monitoring of concentrations of agricultural chemicals including nitrate and herbicides, and to establish baseline concentrations of major ions in the ground water. To meet these objectives, monitor wells were installed at 11 sites near Oshkosh. The geohydrologic properties of the aquifer were estimated from water-level measurements at selected irrigation wells located in the study area and short- term constant-discharge aquifer tests at two monitor wells. Water samples were collected bimonthly and analyzed for specific conductance, pH, water temperature, dissolved oxygen, and nutrients including dissolved nitrate. Samples were collected semiannually for analysis of major ions, and annually for triazine and acetamide herbicides. Evaluation of the aquifer-test data indicates the hydraulic conductivities of the North Platte River alluvial aquifer range between 169 and 184 feet per day and transmissivities ranged from 12,700 to 26,700 feet-squared per day. The average specific yield for the alluvial aquifer, based on the two aquifer tests, was 0.2. Additional hydrologic data for the alluvial aquifer include a horizontal gradient of about 0.002 foot per foot and estimated ground- water flow velocities of about 0.1 to 1.8 feet per day. Evaluation of the water-quality data indicates that nitrate concentrations exceed the U.S. Environmental Protection Agency's (USEPA) Maximum Contamination Level of 10 milligrams per liter for drinking water in areas to the east and west of Oshkosh. In these areas, nitrate concentrations generally are continuing to rise. West of Oshkosh the highest concentrations are now exceeding 50 milligrams per liter. With the exception of one sample, nitrate concentrations exceeding the Maximum Contamination Level were not detected in three wells used to monitor the ground water flowing into and out of the study area, nor in a monitor well located near a municipal well. Results of the study also indicate that an influx of water from Lost Creek Valley, north of the study area, may be mixing with ground water near Oshkosh and diluting concentrations of nitrate.

Water-Resources Investigations Report↗