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USGS2009

Selected achievements, science directions, and new opportunities for the WEBB small watershed research program

Over nearly two decades, the Water, Energy, and Biogeochemical Budgets (WEBB) small watershed research program of the U.S. Geological Survey (USGS) has documented how water and solute fluxes, nutrient, carbon, and mercury dynamics, and weathering and sediment transport respond to natural and humancaused drivers, including climate, climate change, and atmospheric deposition. Together with a continued and increasing focus on the effects of climate change, more investigations are needed that examine ecological effects (e.g., evapotranspiration, nutrient uptake) and responses (e.g., species abundances, biodiversity) that are coupled with the physical and chemical processes historically observed in the WEBB program. Greater use of remote sensing, geographic modeling, and habitat/watershed modeling tools is needed, as is closer integration with the USGS-led National Phenology Network. Better understanding of process and system response times is needed. The analysis and observation of land-use and climate change effects over time should be improved by pooling data obtained by the WEBB program during the last two decades with data obtained earlier and (or) concurrently from other research and monitoring studies conducted at or near the five WEBB watershed sites. These data can be supplemented with historical and paleo-environmental information, such as could be obtained from tree rings and lake cores. Because of the relatively pristine nature and small size of its watersheds, the WEBB program could provide process understanding and basic data to better characterize and quantify ecosystem services and to develop and apply indicators of ecosystem health. In collaboration with other Federal and State watershed research programs, the WEBB program has an opportunity to contribute to tracking the short-term dynamics and long-term evolution of ecosystem services and health indicators at a multiplicity of scales across the landscape.

Conference Paper↗

USGS2016

Optimized methods for total nucleic acid extraction and quantification of the bat white-nose syndrome fungus, Pseudogymnoascus destructans , from swab and environmental samples

The continued spread of white-nose syndrome and its impacts on hibernating bat populations across North America has prompted nationwide surveillance efforts and the need for high-throughput, noninvasive diagnostic tools. Quantitative real-time polymerase chain reaction (qPCR) analysis has been increasingly used for detection of the causative fungus, Pseudogymnoascus destructans , in both bat- and environment-associated samples and provides a tool for quantification of fungal DNA useful for research and monitoring purposes. However, precise quantification of nucleic acid from P. destructans is dependent on effective and standardized methods for extracting nucleic acid from various relevant sample types. We describe optimized methodologies for extracting fungal nucleic acids from sediment, guano, and swab-based samples using commercial kits together with a combination of chemical, enzymatic, and mechanical modifications. Additionally, we define modifications to a previously published intergenic spacer–based qPCR test for P. destructans to refine quantification capabilities of this assay.

Journal of Veterinary Diagnostic Investigation↗

USGS2026

Trends and seasonal patterns of nitrogen and phosphorus concentrations and loads in two Mississippi Alluvial Plain watersheds following nutrient reduction efforts during 2010–22

The Mississippi Alluvial Plain ecoregion in Mississippi was historically part of the largest continuous wetland in North America but was clearcut and converted to row crop agriculture beginning in the late 1800s. To reduce the effects of agriculture on surface waters in the Mississippi Alluvial Plain, nutrient reduction best management practices have been implemented throughout the region, particularly in two small watersheds: Harris Bayou watershed (174.04 square kilometers) and Porter Bayou watershed (267.15 square kilometers). Since 2009, the U.S. Geological Survey, in cooperation with the Mississippi Department of Environmental Quality, has collected water-quality samples monthly and during high-flow runoff events, at three locations within each watershed to monitor and assess nutrient trends following best management practice implementation. Here, we have analyzed long-term and seasonal trends in discharge, total nitrogen (TN), and total phosphorus (TP) concentrations and loads using a combination of quantile-Kendall analysis, quantile regression, generalized additive models, and weighted regression on time, discharge, and season. In Harris Bayou watershed, discharge values at a ~0.4–0.5 daily nonexceedance probability increased by 15 percent per year at the uppermost monitoring site. Additionally, TN concentrations decreased throughout the watershed over time, particularly in the spring and winter months. Reductions in TP were less apparent and only observed at one sampling location in Harris Bayou watershed. Nutrient concentrations in Porter Bayou watershed remained consistent over time and increased at one sampling location. However, despite discrepancies in concentration trends, flow-normalized TN and TP loads consistently decreased over time in both watersheds. At the mouth of both watersheds, peak TN and TP loads decreased between 37.7 and 56.9 percent. Collectively, these results provide evidence that best management practices may help reduce the effect of agricultural practices in the region, particularly in Harris Bayou watershed. Additionally, management efforts resulted in greater reductions in TN concentrations than in TP concentrations.

Mississippi↗

USGS2025

Public, bottled, and private drinking water: Shared contaminant-mixture exposures and effects challenge

BACKGROUND: Humans are primary drivers of environmental contaminant exposures worldwide, including in drinking-water (DW). In the United States (US), point-of-use DW (POU DW) is supplied via private tapwater (TW, predominantly private wells), public-supply TW, and bottled water (BW). Differences in management, monitoring, and messaging and lack of directly intercomparable exposure data influence the actual and perceived quality and safety of different DW supplies and directly impact consumer decision making. OBJECTIVES: The purpose of this paper is to provide a meta-analysis (quantitative synthesis) of POU DW contaminant mixture exposures and corresponding potential human health effects of private-TW, public-TW, and BW by aggregating exposure results and harmonizing apical health benchmark weighted and bioactivity weighted effects predictions across previous studies by this research group. DISCUSSION: Simultaneous exposures to multiple inorganic and organic contaminants of known or suspected human-health concern are common across all three DW supplies, with substantial variability observed in each and no systematic difference in predicted cumulative risk between supply chains. Differences in contaminant or contaminant class exposures (e.g., trace metals, disinfection byproducts), with important implications for DW quality improvements, were observed and attributed to corresponding differences in regulation and compliance monitoring. CONCLUSION: The results indicate that human-health risks from contaminant exposures are common to and comparable in all three DW supplies, including BW. Importantly, this study’s target analytical coverage, which exceeds that currently feasible for water purveyors or homeowners, nevertheless is a substantial underestimation of the full breadth of contaminant mixtures in the environment and potentially present in DW. Thus, the results emphasize the need for improved understanding of the adverse human-health implications of long-term exposures to low level inorganic /organic contaminant mixtures across all three distribution pipelines and do not support commercial messaging of BW as a systematically safer alternative to public-TW. Regardless of the supply, increased engagement in source-water protection and drinking-water treatment, including consumer point of use treatment, is necessary to reduce risks associated with long-term DW contaminant exposures, especially in vulnerable populations, and to reduce environmental waste and plastics contamination.

Environment International↗

USGS2020

Exploring the potential value of satellite remote sensing to monitor chlorophyll-a for U.S. lakes and reservoirs

Assessment of chlorophyll-a, an algal pigment, typically measured by field and laboratory in situ analyses, is used to estimate algal abundance and trophic status in lakes and reservoirs. In situ-based monitoring programs can be expensive, may not be spatially, and temporally comprehensive and results may not be available in the timeframe needed to make some management decisions, but can be more accurate, precise, and specific than remotely sensed measures. Satellite remotely sensed chlorophyll-a offers the potential for more geographically and temporally dense data collection to support estimates when used to augment or substitute for in situ measures. In this study, we compare available chlorophyll-a data from in situ and satellite imagery measures at the national scale and perform a cost analysis of these different monitoring approaches. The annual potential avoided costs associated with increasing the availability of remotely sensed chlorophyll-a values were estimated to range between $5.7 and $316 million depending upon the satellite program used and the timeframe considered. We also compared sociodemographic characteristics of the regions (both public and private lands) covered by both remote sensing and in situ data to check for any systematic differences across areas that have monitoring data. This analysis underscores the importance of continued support for both field-based in situ monitoring and satellite sensor programs that provide complementary information to water quality managers, given increased challenges associated with eutrophication, nuisance, and harmful algal bloom events.

Environmental Monitoring and Assessment↗

USGS2009

Ultraviolet absorbance as a proxy for total dissolved mercury in streams

Stream water samples were collected over a range of hydrologic and seasonal conditions at three forested watersheds in the northeastern USA. Samples were analyzed for dissolved total mercury (THg d ), DOC concentration and DOC composition, and UV 254 absorbance across the three sites over different seasons and flow conditions. Pooling data from all sites, we found a strong positive correlation of THg d to DOC (r 2 = 0.87), but progressively stronger correlations of THg d with the hydrophobic acid fraction (HPOA) of DOC (r 2 = 0.91) and with UV 254 absorbance (r 2 = 0.92). The strength of the UV 254 absorbance-THg d relationship suggests that optical properties associated with dissolved organic matter may be excellent proxies for THg d concentration in these streams. Ease of sample collection and analysis, the potential application of in-situ optical sensors, and the possibility for intensive monitoring over the hydrograph make this an effective, inexpensive approach to estimate THg d flux in drainage waters.

Environmental Pollution↗

USGS1989

Ground-water-quality-monitoring program in Iowa: Nitrate and pesticides in shallow aquifers

Concern exists about the occurrence of agricultural chemicals, primarily nitrate and pesticides, in shallow ground water. In response to this concern, the focus of the Iowa ground-water-quality-monitoring program has shifted to emphasize nonpoint contaminants. The program, which began in 1982, is operated by the U.S. Geological Survey in cooperation with the University of Iowa Hygienic Laboratory and the Iowa Department of Natural Resources, Geological Survey Bureau and Environmental Protection Division. The objectives are to describe and assess the long-term chemical quality of the principal aquifers in Iowa and to direct water-quality assessment and sampling toward regional ground-water-quality concerns. In the spring of 1985, emphasis was placed on the analysis of pesticides in water samples collected from wells completed in surficial aquifers in Quaternary deposits or from wells less than 200 feet deep or both. Samples from these wells were analyzed for nitrate and selected pesticides. In water samples collected from 515 individual shallow wells, 6 percent had nitrate concentrations larger than the maximum contaminant level for public drinking water of 10 milligrams per liter as nitrogen. The concentrations ranged from less than 0.1 to 53 milligrams per liter as nitrogen. Eighteen percent of the samples had concentrations of nitrate between 5 and 10 milligrams per liter as nitrogen. Water samples from 355 individual municipal wells less than 200 feet deep have been analyzed for pesticides at least once. Detectable concentrations of at least one pesticide, including alachlor, atrazine, cyanazine, dicamba, metolachlor, or metribuzin, were detected in 20 percent of the samples. Atrazine was the most prevalent pesticide; concentrations, which ranged from 0.10 to 21 micrograms per liter, were detected in 18 percent of the samples. The results of the monitoring program indicate a relation between decreasing well depth and the presence of detectable concentrations of nitrate and pesticides. Most nitrate and pesticide detection was in areas where surficial aquifers in Quaternary deposits are the principal source of ground water. Pesticides were detected in samples collected throughout the year; samples collected in late spring and early summer more frequently contained pesticides than the other samples.

Iowa↗

USGS2017

Building the vegetation drought response index for Canada (VegDRI-Canada) to monitor agricultural drought: first results

Drought is a natural climatic phenomenon that occurs throughout the world and impacts many sectors of society. To help decision-makers reduce the impacts of drought, it is important to improve monitoring tools that provide relevant and timely information in support of drought mitigation decisions. Given that drought is a complex natural hazard that manifests in different forms, monitoring can be improved by integrating various types of information (e.g., remote sensing and climate) that is timely and region specific to identify where and when droughts are occurring. The Vegetation Drought Response Index for Canada (VegDRI-Canada) is a recently developed drought monitoring tool for Canada. VegDRI-Canada extends the initial VegDRI concept developed for the conterminous United States to a broader transnational coverage across North America. VegDRI-Canada models are similar to those developed for the United States, integrating satellite observations of vegetation status, climate data, and biophysical information on land use and land cover, soil characteristics, and other environmental factors. Collectively, these different types of data are integrated into the hybrid VegDRI-Canada to isolate the effects of drought on vegetation. Twenty-three weekly VegDRI-Canada models were built for the growing season (April–September) through the weekly analysis of these data using a regression tree-based data mining approach. A 15-year time series of VegDRI-Canada results (s to 2014) was produced using these models and the output was validated by randomly selecting 20% of the historical data, as well as holdout year (15% unseen data) across the growing season that the Pearson’s correlation ranged from 0.6 to 0.77. A case study was also conducted to evaluate the VegDRI-Canada results over the prairie region of Canada for two drought years and one non-drought year for three weekly periods of the growing season (i.e., early-, mid-, and late season). The comparison of the VegDRI-Canada map with the Canadian Drought Monitor (CDM), an independent drought indicator, showed that the VegDRI-Canada maps depicted key spatial drought severity patterns during the two targeted drought years consistent with the CDM. In addition, VegDRI-Canada was compared with canola yields in the Prairie Provinces at the regional scale for a period from 2000 to 2014 to evaluate the indices’ applicability for monitoring drought impacts on crop production. The result showed that VegDRI-Canada values had a relatively higher correlation (i.e., r > 0.5) with canola yield for nonirrigated croplands in the Canadian Prairies region in areas where drought is typically a limiting factor on crop growth, but showed a negative relationship in the southeastern Prairie region, where water availability is less of a limiting factor and in some cases a hindrance to crop growth when waterlogging occurs. These initial results demonstrate VegDRI-Canada’s utility for monitoring drought-related vegetation conditions, particularly in drought prone areas. In general, the results indicated that the VegDRI-Canada models showed sensitivity to known agricultural drought events in Canada over the 15-year period mainly for nonirrigated areas.

GIScience and Remote Sensing↗

USGS1998

Evaluation of chemical data from selected sites in the Surface-Water Ambient Monitoring Program (SWAMP) in Florida

A cooperative study between the Florida Department of Environmental Protection (FDEP) and the U.S. Geological Survey was conducted to assess the integrity of selected water-quality data collected at 150 sites in the FDEP Surface-Water Ambient Monitoring Program (SWAMP) in Florida. The assessment included determining the consistency of the water-quality data collected statewide, including commonality of monitoring procedures and analytes, screening of the gross validity of a chemical analysis, and quality assurance and quality control (QA/QC) procedures. Four tests were used to screen data at selected SWAMP sites to estimate the gross validity of selected chemical data: (1) the ratio of dissolved solids (in milligrams per liter) to specific conductance (in microsiemens per centimeter); (2) the ratio of total cations (in milliequivalents per liter) multiplied by 100 to specific conductance (in microsiemens per centimeter); (3) the ratio of total anions (in milliequivalents per liter) multiplied by 100 to specific conductance (in microsiemens per centimeter); and (4) the ionic charge-balance error. Although the results of the four screening tests indicate that the chemical data generally are quite reliable, the extremely small number of samples (less than 5 percent of the total number of samples) with sufficient chemical information to run the tests may not provide a representative indication of the analytical accuracy of all laboratories in the program. In addition to the four screening tests, unusually low or high values were flagged for field and laboratory pH (less than 4.0 and greater than 9.0) and specific conductance (less than 10 and greater than 10,000 microsiemens per centimeter). The numbers of flagged data were less than 1 percent of the 19,937 water samples with pH values and less than 0.6 percent of the 16,553 water samples with specific conductance values. Thirty-four agencies responded to a detailed questionnaire that was sent to more than 60 agencies involved in the collection and analysis of surface-water-quality data for SWAMP. The purpose of the survey was to evaluate quality assurance methods and consistency of methods statewide. Information was compiled and summarized on monitoring network design, data review and upload procedures, laboratory and field sampling methods, and data practices. Currently, most agencies that responded to the survey follow FDEP-approved QA/QC protocol for sampling and have quality assurance practices for recording and reporting data. Also, most agencies responded that calibration procedures were followed in the laboratory for analysis of data, but no responses were given about the specific procedures. Approximately 50 percent of the respondents indicated that laboratory analysis methods have changed over time. With so many laboratories involved in analyzing samples for SWAMP, it is difficult to compare water quality from one site to another due to different reporting conventions for chemical constituents and different analytical methods over time. Most agencies responded that calibration methods are followed in the field, but no specific details were provided. Grab samples are the most common method of collection. Other data screening procedures are necessary to further evaluate the validity of chemical data collected at SWAMP sites. High variability in the concentration of targeted constituents may signal analytical problems, but more likely changes in concentration are related to hydrologic conditions. This underscores the need for accurate measurements of discharge, lake stage, tidal stage at the time of sampling so that changes in constituent concentrations can be properly evaluated and fluxes (loads) of nutrients or metals, for example, can be calculated and compared over time.

Florida↗

USGS2024

Assessment of water levels, nitrate, and arsenic in the Carson Valley Alluvial Aquifer and the development of a data visualization tool for the Carson River Basin, Nevada

Residents of Carson Valley, Douglas County, Nevada, rely on the basin-fill alluvial aquifer underlying the valley for drinking water. Since the 1980s, groundwater levels and water-quality data have been collected to monitor the status of the aquifer system and to assist in planning efforts to address current (2024) and future demand. The U.S. Geological Survey (USGS), in cooperation with Douglas County, Nevada, evaluated trends in water levels, nitrate, and arsenic concentrations from a network of monitoring and domestic wells in Carson Valley. This work also assessed the monitoring well network to determine the suitability of wells for characterizing the occurrence of arsenic in the groundwater. Monitoring of constituents, such as nitrate and arsenic concentrations, is needed to assess changes in contaminant distribution and to evaluate the effect that changing land use and groundwater pumping has on their occurrence and transport. Results of the trend analysis indicate water levels are declining ( p <0.05) in 17 of 26 selected monitoring wells (65 percent). Areas with the largest change in water levels, with more than 20 feet of declines, were within the community areas of Johnson Lane, Ruhenstroth, South Agricultural, East Valley, and Fish Springs. Variations in water levels measured in wells from the Central Agricultural, Minden, Foothill, Alpine County (one well), and Gardnerville Ranchos areas show periods of increase and decrease over time, but they also maintain long-term declining trends ( p <0.05). Increases in nitrate concentrations in groundwater samples collected from 9 out of 14 selected monitoring wells (64 percent) are statistically significant ( p <0.05) within the Ruhenstroth, Gardnerville Ranchos, East Valley, Genoa, and Johnson Lane community areas. Samples collected from a well in Indian Hills/Jacks Valley indicated a decreasing trend in nitrate concentration over time. Nitrate concentrations in samples collected from wells in East Valley, Genoa, Johnson Lane, and Indian Hills/Jack Valley were consistently low (less than 3 milligrams per liter [mg/L]) and stable. Nitrate concentrations from selected wells in Johnson Lane and Garnerville Ranchos exceeded the U.S. Environmental Protection Agency (EPA) maximum contaminant level (MCL) of 10 mg/L (as nitrogen) and have trends that are increasing over time. In 2022, a sample collected from Johnson Lane had a concentration (7.3 mg/L) below the MCL with an increasing trend over time. Temporal trend analyses for groundwater arsenic concentrations in Carson Valley could not be done because of a lack of temporal data. However, using available historical data, arsenic concentrations seem to be greater in groundwater from wells located on the eastern and northern areas of the valley than in wells located on the western or southern areas. Groundwater arsenic concentrations exceed 5 micrograms per liter (μg/L) in most samples collected from wells in Johnson Lane, Airport, Central Agricultural, and East Valley areas and in many cases exceed the U.S. Environmental Protection Agency (EPA) MCL of 10 μg/L. Data indicate that groundwater from domestic wells screened at deeper intervals are likely more vulnerable to elevated arsenic concentrations than shallower wells. A groundwater network evaluation for Carson Valley identified potential modifications in the sampling locations and frequency to better understand the effect of groundwater pumping in communities where municipal and domestic demand are greatest, potentially enhancing understanding of contaminant transport in these areas. Potential modifications to the active well network include reducing the frequency of sample collection from existing network wells (6 out of 11) that have consistently shown low and stable nitrate concentrations, adding wells in areas where data are sparse, and increasing the number of wells in areas with elevated groundwater nitrate concentrations. Including the analysis of arsenic in samples from the active groundwater monitoring well network will provide more detail on the temporal and spatial variability of arsenic concentrations. A visualization tool for the Carson River Basin was developed to provide access to discrete and near real-time hydrologic and water-quality data. The Carson River Basin Hydro Mapper (CBH; U.S. Geological Survey, 2023b) shows active and historical discrete water levels measured by the USGS and the State of Nevada Division of Water Resources, discrete groundwater nitrate and arsenic concentration data collected by the USGS, near real-time streamflow, and surface water levels for select waterbodies. The hydrologic data in the CBH provides resource managers, the public, and the scientific community with an easily accessible tool to present and communicate the most up-to-date information available about local and basin-wide water resources.

Nevada↗

USGS2023

Validation and standardization of SPE and HPLC-UV methods for simultaneous determination of legacy and insensitive munitions

There have been few attempts to consolidate legacy and insensitive munitions analyses. Furthermore, there are no standard methods for insensitive munitions (IM) in tissues, resulting in overlapping methods and supplementary analyses. The goal of the present study was to validate extraction and instrumental methods previously developed and address analytical methodology gaps (missing tissue matrices, combined legacy and IM analysis, and IM compounds). The method encompasses analytes in waters, soils, and tissues. The primary and secondary instrumental methodologies use high performance liquid chromatography-ultraviolet (HPLC-UV) and an alternate LC-mass spectrometry (MS) method, which includes 26 compounds of interest (legacy munitions, IM, IM degradation products , and other munitions compounds). The methods were formally evaluated during a series of double-blind round robin studies including a broad variety of laboratories (Government Department of Defense (DoD), Government non-DoD, ammunition manufacturing, commercial, and academic). The results of these round robin studies were gathered to generate recovery ranges for each of the 26 compounds in each of the matrices. The recovery ranges were subsequently compared with existing recovery ranges for standard explosives analysis, United States Environmental Protection Agency (USEPA) 8330B. The validation study reveals a capable method, which reduces analysis time for IM and legacy munitions analyses.

Environmental Nanotechnology, Monitoring & Managem↗

USGS1997

A study of the temporal variability of atrazine in private well water. part ii: analysis of data

In 1988, the Iowa Department of Natural Resources, along withthe University of Iowa, conducted the Statewide Rural WellWater Survey, commonly known as SWRL. A total of 686private rural drinking water wells was selected by use of aprobability sample and tested for pesticides and nitrate. A subsetof these wells, the 10% repeat wells, were additionally sampledin October, 1990 and June, 1991. Starting in November, 1991,the University of Iowa, with sponsorship from the United StatesEnvironmental Protection Agency, revisited the 10% repeat wellsto begin a study of the temporal variability of atrazine and nitratein wells. Other wells, which had originally tested positive foratrazine in SWRL but were not in the 10% population, wereadded to the study population. Temporal sampling for a year-long period began in February of 1992 and concluded in Januaryof 1993. All wells were sampled monthly, a subset was sampledweekly, and a second subset was sampled for 14 day consecutiveperiods. Of the 67 wells in the 10% population tested monthly,7 (10.4%) tested positive for atrazine at least once during theyear, and 3 (4%) were positive each of the 12 months. Theaverage concentration in the 7 wells was 0.10 µg/L. Fornitrate, 15 (22%) wells in the 10% repeat population monthlysampling were above the Maximum Contaminant Level of 10 mg/L at least once. This paper, the second of two papers on thisstudy, describes the analysis of data from the survey. The firstpaper (Lorber et al., 1997) reviews the study design, theanalytical methodologies, and development of the data base.

Environmental Monitoring and Assessment↗

USGS2007

Geographic Analysis and Monitoring Program

The surface of the Earth is changing rapidly, at local, regional, national, and global scales, with significant repercussions for people, the economy, and the environment. Some changes have natural causes, such as wildland fires or hurricanes, while other changes on the land, such as resource extraction, agricultural practices, and urban growth, are human-induced processes. There are other types of changes that are a combination of natural and human-induced factors; landslides and floods, for example, are fundamentally natural processes that are often intensified or accelerated by human land use practices. Whatever their cause, land-surface changes can have profound environmental and economic impacts.

Fact Sheet↗

USGS2012

Estimates of tracer-based piston-flow ages of groundwater from selected sites: National Water-Quality Assessment Program, 2006-2010

Piston-flow age dates were interpreted from measured concentrations of environmental tracers from 812 National Water-Quality Assessment (NAWQA) Program groundwater sites from 27 Study Units across the United States. The tracers of interest include chlorofluorocarbons (CFCs), sulfur hexafluoride (SF 6 ), and tritium/helium-3 ( 3 H/ 3 He). Tracer data compiled for this analysis were collected from 2006 to 2010 from groundwater wells in NAWQA studies, including: * Land-Use Studies (LUS, shallow wells, usually monitoring wells, located in recharge areas under dominant land-use settings), * Major-Aquifer Studies (MAS, wells, usually domestic supply wells, located in principal aquifers and representing the shallow drinking water supply), * Flow System Studies (FSS, networks of clustered wells located along a flowpath extending from a recharge zone to a discharge zone, preferably a shallow stream) associated with Land-Use Studies, and * Reference wells (wells representing groundwater minimally impacted by anthropogenic activities) also associated with Land-Use Studies. Tracer data were evaluated using documented methods and are presented as aqueous concentrations, equivalent atmospheric concentrations (for CFCs and SF 6 ), and tracer-based piston-flow ages. Selected ancillary data, such as redox data, well-construction data, and major dissolved-gas (N 2 , O 2 , Ar, CH 4 , and CO 2 ) data, also are presented. Recharge temperature was inferred using climate data (approximated by mean annual air temperature plus 1°C [MAAT +1°C]) as well as major dissolved-gas data (N 2 -Ar-based) where available. The N 2 -Ar-based temperatures showed significantly more variation than the climate-based data, as well as the effects of denitrification and degassing resulting from reducing conditions. The N 2 -Ar-based temperatures were colder than the climate-based temperatures in networks where recharge was limited to the winter months when evapotranspiration was reduced. The tracer-based piston-flow ages compiled in this report are provided as a consistent means of reporting the tracer data. The tracer-based piston-flow ages may provide an initial interpretation of age in cases in which mixing is minimal and may aid in developing a basic conceptualization of groundwater age in an aquifer. These interpretations are based on the assumption that tracer transport is by advection only and that no mixing occurs. In addition, it is assumed that other uncertainties are minimized, including tracer degradation, sorption, contamination, or fractionation, and that terrigenic (natural) sources of tracers, and spatially variable atmospheric tracer concentrations are constrained.

Scientific Investigations Report↗

USGS1999

Assessing biological effects from highway-runoff constituents

Increased emphasis on evaluation of nonpoint-source pollution has intensified the need for techniques that can be used to discern the toxicological effects of complex chemical mixtures. In response, the use of biological assessment techniques is receiving increased regulatory emphasis. When applied with documented habitat assessment and chemical analysis, these techniques can increase our understanding of the influence of environmental contaminants on the biological integrity and ecological function of aquatic communities. The contaminants of greatest potential concern in highway runoff are those that arise from highway construction, maintenance, and use. The major contaminants of interest are deicers; nutrients; metals; petroleum-related organic compounds, such as polycyclic aromatic hydrocarbons (PAHs), benzene, toluene, ethylbenzene, and xylene (BTEX), and methyl tert -butyl ether (MTBE); sediment washed off the road surface; and agricultural chemicals used in highway maintenance. Hundreds, if not thousands, of biological endpoints (measurable responses of living organisms) may be either directly or associatively affected by contaminant exposure. Measurable effects can occur throughout ecosystem processes across the wide range of biological complexity, ranging from responses at the biochemical level to the community level. The challenge to the environmental scientist is to develop an understanding of the relationship of effects at various levels of biological organization in order to determine whether a causal relationship exists between chemical exposure and substantial ecological impairment. This report provides a brief history of the evolution of biological assessment techniques, a description of the major classes of contaminants that are of particular interest in highway runoff, an overview of representative biological assessment techniques, and a discussion of data-quality considerations. Published reports with a focus on the effects of highway runoff on the local ecosystem were reviewed to provide information on (1) the suitability of the existing data for a quantitative national synthesis, (2) the methods available to study the effects of highway runoff on local ecosystems, and (3) the potential for adverse effects on the roadside environment and receiving waters. Although many biological studies have been done, the use of different methods and a general lack of sufficient documentation precludes a quantitative national synthesis on the basis of the existing data. The Federal Highway Administration, the U.S. Environmental Protection Agency, the U.S. Geological Survey, the Intergovernmental Task Force on Monitoring Water Quality, and the National Resources Conservation Service all have developed and documented methods for assessing the effects of contaminants on ecosystems in receiving waters. These published methods can be used to formulate a set of protocols to provide consistent information from highway-runoff studies. Review of the literature indicates (qualitatively) that highway runoff (even from highways with high traffic volume) may not usually be acutely toxic. Tissue analysis and community assessments, however, indicate effects from highway- runoff sediments near discharge points (even from sites near highways with relatively low traffic volumes). At many sites, elevated concentrations of highway-runoff constituents were measured in tissues of species associated with aquatic sediments. Community assessments also indicate decreases in the diversity and productivity of aquatic ecosystems at some sites receiving highway runoff. These results are not definitive, however, and depend on many site-specific criteria that were not sufficiently documented in most of the studies reviewed.

Open-File Report↗

USGS2006

Response of microbial community composition and function to soil climate change

Soil microbial communities mediate critical ecosystem carbon and nutrient cycles. How microbial communities will respond to changes in vegetation and climate, however, are not well understood. We reciprocally transplanted soil cores from under oak canopies and adjacent open grasslands in a California oak-grassland ecosystem to determine how microbial communities respond to changes in the soil environment and the potential consequences for the cycling of carbon. Every 3 months for up to 2 years, we monitored microbial community composition using phospholipid fatty acid analysis (PLFA), microbial biomass, respiration rates, microbial enzyme activities, and the activity of microbial groups by quantifying 13C uptake from a universal substrate (pyruvate) into PLFA biomarkers. Soil in the open grassland experienced higher maximum temperatures and lower soil water content than soil under the oak canopies. Soil microbial communities in soil under oak canopies were more sensitive to environmental change than those in adjacent soil from the open grassland. Oak canopy soil communities changed rapidly when cores were transplanted into the open grassland soil environment, but grassland soil communities did not change when transplanted into the oak canopy environment. Similarly, microbial biomass, enzyme activities, and microbial respiration decreased when microbial communities were transplanted from the oak canopy soils to the grassland environment, but not when the grassland communities were transplanted to the oak canopy environment. These data support the hypothesis that microbial community composition and function is altered when microbes are exposed to new extremes in environmental conditions; that is, environmental conditions outside of their "life history" envelopes. ?? 2006 Springer Science+Business Media, Inc.

Microbial Ecology↗

USGS2023

Quantifying ecosystem states and state transitions of the Upper Mississippi River System using topological data analysis

Aquatic systems worldwide can exist in multiple ecosystem states (i.e., a recurring collection of biological and chemical attributes), and effectively characterizing multidimensionality will aid protection of desirable states and guide rehabilitation. The Upper Mississippi River System is composed of a large floodplain river system spanning 2200 km and multiple federal, state, tribal and local governmental units. Multiple ecosystem states may occur within the system, and characterization of the variables that define these ecosystem states could guide river rehabilitation. We coupled a long-term (30-year) highly dimensional water quality monitoring dataset with multiple topological data analysis (TDA) techniques to classify ecosystem states, identify state variables, and detect state transitions over 30 years in the river to guide conservation. Across the entire system, TDA identified five ecosystem states. State 1 was characterized by exceptionally clear, clean, and cold-water conditions typical of winter (i.e., a clear-water state); State 2 had the greatest range of environmental conditions and contained most the data (i.e., a status-quo state); and States 3, 4, and 5 had extremely high concentrations of suspended solids (i.e., turbid states, with State 5 as the most turbid). The TDA mapped clear patterns of the ecosystem states across several riverine navigation reaches and seasons that furthered ecological understanding. State variables were identified as suspended solids, chlorophyll a , and total phosphorus, which are also state variables of shallow lakes worldwide. The TDA change detection function showed short-term state transitions based on seasonality and episodic events, and provided evidence of gradual, long-term changes due to water quality improvements over three decades. These results can inform decision making and guide actions for regulatory and restoration agencies by assessing the status and trends of this important river and provide quantitative targets for state variables. The TDA change detection function may serve as a new tool for predicting the vulnerability to undesirable state transitions in this system and other ecosystems with sufficient data. Coupling ecosystem state concepts and TDA tools can be transferred to any ecosystem with large data to help classify states and understand their vulnerability to state transitions.

PLOS Computational Biology↗

USGS2006

Chlorophyll a and inorganic suspended solids in backwaters of the upper Mississippi River system: Backwater lake effects and their associations with selected environmental predictors

The Long Term Resource Monitoring Program (LTRMP) uses a stratified random sampling design to obtain water quality statistics within selected study reaches of the Upper Mississippi River System (UMRS). LTRMP sampling strata are based on aquatic area types generally found in large rivers (e.g., main channel, side channel, backwater, and impounded areas). For hydrologically well-mixed strata (i.e., main channel), variance associated with spatial scales smaller than the strata scale is a relatively minor issue for many water quality parameters. However, analysis of LTRMP water quality data has shown that within-strata variability at the strata scale is high in off-channel areas (i.e., backwaters). A portion of that variability may be associated with differences among individual backwater lakes (i.e., small and large backwater regions separated by channels) that cumulatively make up the backwater stratum. The objective of the statistical modeling presented here is to determine if differences among backwater lakes account for a large portion of the variance observed in the backwater stratum for selected parameters. If variance associated with backwater lakes is high, then inclusion of backwater lake effects within statistical models is warranted. Further, lakes themselves may represent natural experimental units where associations of interest to management may be estimated.

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