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At least 217 records · Page 12Linked to original sources
USGS2022

Joint-species analysis reveals potential displacement of native fishes by non-native fishes within the Santa Ana River, California

Accurate estimates of abundance are a cornerstone for resource managers to make effective decisions for fish conservation. However, multiple sampling methods often are required to sample fish communities, and ignoring the detection process can create substantial bias in latent state parameter estimation (e.g., abundance, survival). We developed a joint-species N -mixture model that integrated snorkel, seining, and electrofishing surveys to estimate factors affecting native and non-native fish distributions in the Santa Ana River, California. We found through data integration that native Santa Ana sucker ( Catostomus santaanae ) and arroyo chub ( Gila orcuttii ) were most abundant in wide stream channels, and the abundance of both native fishes were negatively correlated with non-native largemouth bass ( Micropterus salmoides ). Our results highlight the power of integrating multiple data sets into a single analysis and incorporating among-species correlation into abundance modeling. Our results also highlight a pattern of native fish declines that coincides with an expanding largemouth bass population, a concern for the management of native aquatic communities within the Santa Ana River.

California↗
USGS2022

Conflicts among protected native birds and valuable sport fishes: Potential pelican predation effects

Reservoirs are examples of novel ecosystems that have developed into popular sport fisheries; these systems are also becoming seasonal refuges for migratory birds, including the piscivorous American white pelican ( Pelecanus erythrorhynchos ). We (1) investigated the proportion of cutthroat trout ( Oncorhynchus clarkii utah ) and other species consumed by pelicans, (2) compared whether pelicans have an adverse effect on cutthroat trout spawning movement, and (3) determined the importance of pelican predation relative to other sources of fish mortality in Strawberry Reservoir, Utah, USA. Pelican diet samples consisted of >85% Utah sucker ( Catostomus ardens ), 6% Utah chub ( Gila atraria ), and 3% cutthroat trout. Based on bioenergetics, we estimated that pelicans consumed 384–3020 individual cutthroat trout (0.17%–1.3% of population), in contrast to 14 166–27 196 nongame sucker and chub. Bird-related mortality rate ranged from 1% to 6% for stocked, PIT (passive integrated transponder)-tagged adult cutthroat trout and from 4% to 16% for subadult cutthroat trout. Based on these results, any management action taken to control pelican predation would need to be weighed against the benefits of nongame fish removal and the protected status of pelicans.

Utah↗
USGS2022

Response of alewife abundance to the bacterial kidney disease outbreak in the Chinook salmon population of Lake Michigan: Importance of predation

Prey fish abundance can be influenced by predation (top-down) and food limitation (bottom-up) effects. I characterized temporal trends in yearling and older (YAO) alewife ( Alosa pseudoharengus ) biomass density, as estimated by a long-term bottom trawl survey, in Lake Michigan during 1973–2019. Special attention was given to the bacterial kidney disease (BKD) outbreak in the population of Chinook salmon ( Oncorhynchus tshawytscha ), the predominant predator on alewives in the lake. YAO alewife biomass density exhibited a steep and significant decline during 1973–1985, but then partially rebounded with a significant increase between the 1983–1985 and 1986–2003 (BKD years) periods, followed by a significant decrease between the 1986–2003 and 2004–2006 periods. YAO alewife biomass density showed another significant decline during 2004–2019. The BKD outbreak led to a partial relaxation of predation on the YAO alewife population, and YAO alewife biomass density responded by showing a moderate increase in 1986 and then fluctuating about this moderately higher level for more than 15 years. Overall, temporal trends in YAO alewife biomass density were primarily driven by predation.

Lake Michigan↗
USGS2022

Stream size, temperature, and density explain body sizes of freshwater salmonids across a range of climate conditions

Climate change and anthropogenic activities are altering the body sizes of fishes, yet our understanding of factors influencing body size for many taxa remains incomplete. We evaluated the relationships between climate, environmental, and landscape attributes and the body size of different taxa of freshwater trout (Salmonidae) in the USA. Hierarchical spatial modeling across a gradient of habitats (5221 sites) illustrated the importance of watershed effects, which explained 17%–45% of the of the variation in body size across taxa. Stream size had a strong, positive relationship with body size, yet there was approximately tenfold difference in the strength of the relationship across taxa. Trout body size consistently declined with increasing density across taxa. Despite reliance on cold water, we found positive relationships between summer stream temperature and trout body size across most taxa. Our results highlight how providing trout access to larger, productive rivers for the expression of growth and life-history variation would promote body size diversity within and across populations.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2022

First juvenile Chum Salmon confirms successful reproduction for Pacific salmon in the North American Arctic

The distributional extent of Pacific salmon Oncorhynchus spp. in the North American Arctic is unresolved. While adult Pacific salmon have a recurring presence across the Alaskan North Slope and into the Canadian Arctic, it is uncertain if these fish are part of established Arctic populations, vagrants from outside sources reproducing unsuccessfully, or both. Here we present the first confirmed record of a juvenile Chum Salmon O. keta captured in the nearshore marine ecosystem in the North American Arctic. This provides the first scientific evidence of successful spawning and early marine survival of Pacific salmon in the North American Arctic. It was caught near Kaktovik, Alaska in August 2017 with a group of similarly sized age-0 Mackenzie River Arctic Cisco Coregonus autumnalis . Stable isotope and otolith microchemistry analyses are consistent with use of the nearshore estuarine corridor from the Mackenzie River west along the northern coast. This contributes critical information needed to identify, manage, and conserve biodiversity at the northern range edge, and will help to clarify the status of Pacific salmon as potentially emerging fisheries develop in the North American Arctic due to climate warming.

Alaska↗
USGS2022

Adult Atlantic salmon (Salmo salar) delayed below dams rapidly deplete energy stores

Atlantic salmon ( Salmo salar ) return to rivers in spring for an energetically costly upstream migration for spawning. These fish are often delayed in the lower river below dams, subjecting them to warmer waters than occur in upstream sections of river, that may increase metabolic costs. We sought to quantify the energetic cost of dam-mediated delays in migrating adults in the Penobscot and Kennebec rivers, ME. We radio-tagged fish at the lower most dams, released them downstream (18 and 14 km), and tracked their movements back upstream. We used a Distell Fish Fatmeter as a noninvasive measurement of full-body energy at tagging and then again after re-ascending the fish-way at the dams. We found that adults ( n = 99) experienced average delays of 16–23 days at dams, losing 11%–22% of initial fat reserves. Using linear regressions, we showed thermal experience as a strong predictor of fat loss. Delay time was also a contributing factor. Extensive delays at dams expose migrating Atlantic salmon to warmer temperatures and increase the depletion rate of energy reserves required for spawning and post-spawn survival.

Maine↗
USGS2022

Effects of dam-induced delays on system-wide survival of Atlantic salmon smolts during high-flow, high-survival years in the Penobscot River, Maine, USA

System-wide survival of hatchery-reared Atlantic salmon ( Salmo salar ) smolts was evaluated (2017–2019) in the Penobscot River and compared to survival estimates from previous years that spanned major changes (2005–2016). This system was transformed through two dam removals in 2012 and construction of a nature-like passage structure at a third. The main stem had three dams (five prior to 2012), while the main tributary had four dams (one with the new nature-like passage). We estimated survival using acoustic telemetry mark–recapture ( n = 1482) from 2017 to 2019. Six release sites and two release dates were included to assess system-wide survival. Survival from 2017 to 2019 was higher than previous years, with total cumulative survival > 0.75, independently of year and release sites, compared to survival < 0.5 in previous years. These years coincided with exceptional high flows not seen previously. We found an effect of delays on survival, longer delays associated with lower survival. Overall, survival in these years increased in all reaches relative to previous years except for one dam, Weldon Dam, which was a site of sustained high mortality.

Maine↗
USGS2023

Effects of freshwater residence time on reproductive success in anadromous alewife (Alosa pseudoharengus): climate change implications

Earlier spring warming and anadromous fish migrations prompted by climate change are linked to shorter freshwater residency. Impacts of phenological change on anadromous fish populations are poorly understood with limited studies focused on iteroparous non-salmonids. We assessed freshwater residence time and reproductive success in an iteroparous clupeid, alewife ( Alosa pseudoharengus ) using a pedigree analysis and otolith-based spawning dates from captured juveniles. The primary objectives were to (1) estimate adult spawning duration in a freshwater pond (freshwater residence time) and (2) evaluate adult freshwater residence time, arrival date, length, sex, and reproductive success across 2 years in one system. Estimated freshwater residence times varied widely (1–64 days), and longer residence times were associated with earlier arrival dates, higher reproductive success, and more mating events. Longer freshwater residence times may allow alewife to spawn with more mates, produce more gametes, and experience a range of spawning and nursery conditions. Plasticity in alewife freshwater residence time could support earlier and shorter migration periods but may result in lower reproductive output if adults spend less time in freshwater ponds.

Massachusetts↗
USGS2023

Juvenile sea lamprey (Petromyzon marinus) have a wide window of elevated salinity tolerance that is eventually limited during springtime warming

The present study examined changes in biometric characteristics, osmoregulatory capacity, and seawater (SW) tolerance of juvenile sea lamprey ( Petromyzon marinus ) throughout the varying thermal changes from late autumn to late spring. Body length, mass, and condition factor were maintained until April, when significant declines in mass and condition factor were observed to correspond with increases in temperature. Nearly 100% survival in SW was maintained through April. In May, after river and estuarine temperatures had increased, significant mortality in SW (up to 50%) was observed. After SW acclimation, plasma chloride was maintained at an elevated set point, and gill Na + /K + -ATPase activity was elevated. Neither parameter appeared to be affected during springtime warming. Together, these results provide a first characterization of the sustained osmoregulatory performance of juvenile sea lamprey after metamorphosis and show that the window of increased hypo-osmoregulatory performance for SW entry lasts for at least 5 months but may ultimately be limited by increases in river water temperatures in late spring.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2023

Using continuous surveys to evaluate precision and bias of inferences from design-based reach-scale sampling of stream habitat

Accurately estimating stream characteristics is essential for managing and restoring populations and aquatic ecosystems. Reach-based sampling designs have been used extensively to collect fisheries related data; however, few studies have examined the effectiveness of reach-based sampling designs for stream habitat assessments. Here, we used continuous habitat surveys to census stream attributes in tributaries in the upper Lewis River, WA and better understand the potential bias and precision of reach-based designs. We used resampling analyses via bootstrapping to create simulated outcomes of different sampling designs including simple random with equal probability, simple random with unequal probability, and a generalized random tessellation stratified design (GRTS). We found precision of estimates of habitat attributes (large woody debris, residual pool depth, and grain size) increased with sampling intensity; however, the effort needed to achieve reasonable precision (CV = 0.20) varied across streams, attributes, and designs. Bias was relatively low, but also varied across streams and attributes. Our findings illustrate the challenges of using reach-based designs for stream habitat assessments and the need for novel approaches for broader data collection.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2023

Territories within groups: The dynamic competition of drift-feeding juvenile Chinook salmon in 3-dimensional space

Salmonid populations are often regulated by territorial competition among juveniles for food and space. In the canonical view, salmonid territories are spaced horizontally across the river bottom in a 2-D mosaic. However, some juveniles instead feed in tight, three-dimensional (3-D) social groups. To investigate whether territoriality is possible within such groups, we applied a new concept—the momentary home range—to quantify the size, exclusivity, and temporal dynamics of 3-D space use by juvenile Chinook Salmon ( Oncorhynchus tshawytscha ) in the Chena River, Alaska. Individual strategies spanned a broad continuum of exclusivity and stationarity. However, some of the largest, most dominant fish in each group aggressively defended stationary, exclusive feeding spaces and thus were unambiguously territorial. Transient floaters entered and left the group quickly. A majority of fish were not aggressive but nevertheless occupied exclusive, stationary spaces that probably function as territories with regard to resource distribution and population regulation. The presence of territoriality within social groups, in a 3-D configuration, expands the known domain of this important behavior.

Alaska↗
USGS2023

Longitudinal analyses of catch-at-age data for reconstructing year-class strength, with an application to lake trout (Salvelinus namaycush) in the main basin of Lake Huron

We investigated using longitudinal models to reconstruct year-class strength (YCS) from catch-at-age data, with an example application to lake trout ( Salvelinus namaycush ) in the main basin of Lake Huron. The best model structure depended on the age range used for model implementation. The YCS trajectory from the full age range (3–30 years) was similar to the trajectory from a narrow age range that approximated the age of recruitment to the fishing gears (5–7 years), but YCS estimates from the full age range included additional variations due to time-dependent selectivity and mortality. When using ages younger or older than the likely ages of recruitment, YCS estimates did not represent recruitment abundances and were also biased by trends in age-specific selectivity and mortality across years. Longitudinal YCS estimates are likely more robust than single-age recruitment indices, which are often subject to interannual changes in catchability and selectivity. Our findings provide guidance for future applications of the longitudinal YCS reconstruction that in turn may inform and supplement more comprehensive research and management programs for understanding fish recruitment dynamics.

Lake Huron↗
USGS2023

Drought related changes in water quality surpass effects of experimental flows on trout growth downstream of Lake Powell reservoir

Flows released from reservoirs are often modified to mitigate the negative ecosystem effects of dams. We estimated the effects of two experimental flows, fall-timed floods and elimination of sub-daily variation in flows on weekends, on growth rates of rainbow trout (Oncorhynchus mykiss) in the Colorado River downstream from Glen Canyon Dam. Experimental flow effects were compared to effects of water temperature, phosphorous concentration, solar insolation, and competition, by fitting mixed effect von Bertalanffy models to ~ 10,000 observations of growth from mark-recapture between 2012 and 2021. There was strong support for models predicting faster growth during intervals with higher solar insolation, and lower water temperature and competition for prey. Effects of phosphorus and experimental flows were small and uncertain. Drought-related increases in dam release temperatures during summer and fall were predicted to result in severe weight loss for larger trout and could eventually threaten the viability of the population and the fishery it supports. The effects of water temperature and competition on fish growth substantially exceeded the effects of controlled floods and steadier flows.

Arizona, Utah↗
USGS2023

The scale-dependent role of submerged macrophytes as drift-feeding lotic fish habitat

Although submerged macrophyte (hereafter, “macrophyte”) communities are globally prevalent in low-gradient rivers, the net reach-scale effect of macrophytes on drift-feeding fish microhabitat preference is poorly understood. We used snorkeling and bioenergetics to study fish habitat selection for rainbow trout ( Oncorhynchus mykiss ) in the Henrys Fork, ID, USA, investigating microhabitat preference across a reach-scale gradient of macrophyte growth. Fish preferred microhabitats with deep water, low velocity, and low macrophyte coverage. Preferences for microhabitats with higher net rate of energy intake (NREI) were modulated by reach-scale macrophyte coverage, higher coverage increasing preferences for higher NREI. Macrophyte coverage was a weak positive predictor for depth and NREI, and a weak negative predictor for water velocity and median substrate. Our results suggest trade-offs between fish predation risk and bioenergetic food intake, with macrophytes modulating these trade-offs across scales by affecting reach-scale geomorphology, bioenergetics, and predation risk. As such, this study highlights the important and dynamic role that macrophytes can play in fish population dynamics in rivers, with important implications for management decisions.

Idaho↗
USGS2023

Tracking anadromous fish over successive freshwater migrations reveals the influence of tagging effect, previous success and abiotic factors on upstream passage over barriers

Predicting and mitigating the impact of anthropogenic barriers on migratory fish requires an understanding of the individual and environmental factors that influence barrier passage. Here, the upstream spawning migrations of iteroparous twaite shad Alosa fallax were investigated over three successive spawning migrations in a highly fragmented river basin using passive acoustic telemetry (n=184). More fish approached and passed barriers in the lower river reaches than further upstream, with the median cumulative weir passage time (IQR) of 4.6 (1.8 - 9.2) days representing 18% of their time in river. Returning fish in their second year had significantly higher weir passage rates than in their tagging year, with passage rates also positively influenced by previous passage success. Higher water temperature and river level also had positive impacts on passage rates. Lower weir passage rates by newly tagged individuals suggests that reliance on within-year passage estimates in telemetry-based barrier impact assessments could result in conservative results, while higher passage rates of previously successful versus unsuccessful individuals suggests a conserved motivation and/or inherent ability to pass barriers.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2023

Linking ecosystem processes to consumer growth rates: Gross primary productivity as a driver of freshwater fish somatic growth in a resource-limited river

Individual growth can exert strong controls on population dynamics and be constrained by resource acquisition rates. Difficulty in accurately quantifying resource availability over large spatial extents and at high temporal frequency often limits attempts to understand the extent that resources limit individual growth. Daily estimates of stream metabolism, including gross primary productivity (GPP), are increasingly available but have not, to our knowledge, been linked to fish growth. Here we examine how GPP, water temperature, high flow and turbidity are linked to spatiotemporal variation in growth of flannelmouth sucker (Catostomus latipinnis). We fit state space growth models to six years of mark-recapture data collected in four river reaches spanning 300 river kilometers. Consistent with past research in this system, we find that water temperature is the dominant driver of spatiotemporal variation in growth. However, we also find that GPP is strongly linked to fish growth. Fish growth is likely to be linked to stream metabolism in other systems where overall productivity, not the quality of primary producers, limits the food webs that support fish growth.

Arizona↗
USGS2023

Impeding access to tributary spawning habitat and releasing experimental fall-timed floods increases brown trout immigration into a dam's tailwater

River ecosystems have been altered by flow regulation and species introductions. Regulated flow regimes often include releases designed to benefit certain species or restore ecosystem processes, and invasive species suppression programs may include efforts to restrict access to spawning habitat. The impacts of these management interventions are often uncertain. Here, we assess hypotheses regarding introduced brown trout (Salmo trutta) movement in a regulated river. We model mark-recapture data in a multistate framework to assess whether movement was affected by the operation of a tributary weir (restricting access to spawning habitat), experimental releases of fall-timed High Flow Experiments (Fall HFEs), or simply increased during the fall, spawning season. Our results suggest that the presence of the weir led to reduced tributary homing and the release of Fall HFEs stimulated upstream movement and straying. Both effects are of a similar magnitude, however the fall HFE effect is more certain. Our results suggest the expansion of an invasive species was stimulated by management interventions, and demonstrate the potential for unanticipated outcomes of restoration in highly altered river ecosystems.

Arizona, Utah↗
USGS2023

Who spawns where? Temperature, elevation, and discharge differentially affect the distribution of breeding by six Pacific salmonids within a large river basin

Within the geographic range of salmonid fishes, many apparently suitable rivers and streams are used for reproduction by some species but not others. This is widely known but seldom addressed, as studies often examine factors determining the distribution of one or only a few species. We examined physical factors associated with the spawning distribution of six native Pacific salmonids (pink, chum, coho, and Chinook salmon, bull trout, and steelhead) in the Skagit River basin, Washington. Annual mean temperature and catchment elevation had the strongest association with spawning assemblage distribution, but stream length, annual discharge, seasonal hydrology, and land use were also influential. Some species (e.g., pink and Chinook salmon) were more closely associated with each other and with common variables than others, and bull trout were the most distinctive. For interpretation, we investigated the roles of adult body size, timing of spawning, and duration of juvenile rearing, but none of these factors explained groupings in the data. Interspecific differences in habitat association remained, suggesting fundamental constraints on species distributions with implications for conservation and restoration.

Washington↗