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A comprehensive monitoring program for North American shorebirds

Anthropogenic changes to the biosphere, including widespread degradation and losses of habitats and ecosystems, are causing rapid and profound changes to bird and other wildlife populations throughout the world. Such changes have led to increasing risks and rates of extinction. As a consequence, information on how bird populations are changing is becoming increasingly important to wildlife conservationists and managers. Early detection of population change is crucial for setting wildlife planning and management priorities. For example, information on population size, population vulnerability, and population change has been central to international conservation strategies such as the Ramsar Convention, the Western Hemisphere (Bonn) Convention, and the Western Hemisphere Shorebird Reserve Network. Measuring population size or change is also crucial for evaluating the effectiveness of population management programs implemented by wildlife agencies both locally and regionally. Although the concept of determining population size is simple, practical difficulties can be enormous and costly to overcome. In the United States, 4 billion dollars will be spent in year 2000 to census the human population, possibly one of the most easily counted of all vertebrates. By contrast, the portion of the FY 2000 budget of the U.S. Department of the Interior allotted for tracking populations of all migratory birds (> 600 species) is less than 5 million dollars (.0125% of the human census figure). This falls far short of the amount required to provide adequate, science-based information about bird populations and population change to wildlife managers. The gap between current ability and need is especially noteworthy for shorebirds. There are 72 species, subspecies, or distinct populations of shorebirds in North America. Even though most of these have received less conservation attention than such groups as waterfowl, colonial waterbirds, or songbirds, recent independent evaluation of data collected for other purposes in the eastern United States and Canada during the 1970s and early 1980s showed that 16 of 26 species surveyed are apparently declining, some at rates exceeding 5% per year (Howe et al., 1989). Except for one increasing species, populations of the other 9 species were statistically unchanged over the time period analyzed. In most cases causes of shorebird population declines are poorly known. For some species, the declines may be part of natural population cycles. For others the changes may reflect deterioration of conditions on the nesting grounds, at migration stopover locations, in wintering zones, or combinations of these. Determining which of these scenarios is correct and what management actions, if any, are warranted will be possible only after implementing a comprehensive monitoring plan such as that described here

Report↗

Sequence analysis of the msp4 gene of Anaplasma ovis strains

Anaplasma ovis (Rickettsiales: Anaplasmataceae) is a tick-borne pathogen of sheep, goats and wild ruminants. The genetic diversity of A. ovis strains has not been well characterized due to the lack of sequence information. In this study, we evaluated bighorn sheep ( Ovis canadensis ) and mule deer (Odocoileus hemionus ) from Montana for infection with A. ovis by serology and sequence analysis of the msp4 gene. Antibodies to Anaplasma spp. were detected in 37% and 39% of bighorn sheep and mule deer analyzed, respectively. Four new msp4 genotypes were identified. The A. ovis msp4 sequences identified herein were analyzed together with sequences reported previously for the characterization of the genetic diversity of A. ovis strains in comparison with other Anaplasma spp. The results of these studies demonstrated that although A. ovis msp4 genotypes may vary among geographic regions and between sheep and deer hosts, the variation observed was less than the variation observed between A. marginale and A. phagocytophilum strains. The results reported herein further confirm that A. ovis infection occurs in natural wild ruminant populations in Western United States and that bighorn sheep and mule deer may serve as wildlife reservoirs of A. ovis . ?? 2006.

Veterinary Microbiology↗

Ferruginous Hawk movements respond predictably to intra-annual variation but unexpectedly to anthropogenic habitats

Birds exhibit flexible movement responses to environmental variation across the annual cycle, and those responses can provide insight into potential impacts that environmental changes may have on these species. To understand year-round variation in space use by Ferruginous Hawks Buteo regalis , we tracked 12 birds breeding in southwestern Idaho, USA, using GPS telemetry collected over 207 bird-months. Home-range sizes of territorial adult hawks showed strong intra-annual variation, being smallest from April to June and largest from July to October. In contrast, juvenile birds (< 2 years old) did not appear to hold territories and showed no detectable intra-annual variation in ranging behaviour. Association with land-cover types by territorial birds varied between breeding and non-breeding months and was linked to home-range size. Home-range sizes of non-territorial birds were larger than those of territorial birds, and that size did not vary across the year. Association with anthropogenic habitats (irrigated cropland habitats that can provide high rodent densities and increased foraging opportunities) was negatively associated with home-range size in months of the non-breeding season. Unexpectedly, the opposite was true in the months of the breeding season, such that use of croplands resulted in larger home-ranges. Patterns in home-range size were probably linked to intrinsic factors such as the timing of breeding and migratory behaviour, and to extrinsic factors such as prey availability associated with specific land-cover types. These results have implications for our understanding of the response of Ferruginous Hawks and other similar species to predicted changes in land cover, and they suggest unexpected relationships between human activity and wildlife behaviour. Furthermore, because the birds we tracked used a large portion of western North America, they are probably relevant far beyond the small area where these individuals were trapped.

Idaho↗

Effects of Hurricane Katrina on the forest structure of taxodium distichum swamps of the Gulf Coast, USA

Hurricane Katrina pushed mixed Taxodium distichum forests toward a dominance of Taxodium distichum (baldcypress) and Nyssa aquatica (water tupelo) because these species had lower levels of susceptibility to wind damage than other woody species. This study documents the volume of dead versus live material of woody trees and shrubs of T. distichum swamps following Hurricane Katrina along the Gulf Coast of Mississippi and Louisiana. Pearl River Wildlife Management Area near Canton, Mississippi had the highest winds of the study areas, and these forests were located in the northeast quadrant of Hurricane Katrina (sustained wind 151 kph (94 mph)). Jean Lafitte National Historical Park and Preserve south of New Orleans had medium to high winds (sustained winds 111 kph (69 mph) at the New Orleans lakefront). Cat Island National Wildlife Refuge had a lower level of winds and was positioned on the western edge of the storm. The forests at Pearl River and to a lesser extent at Jean Lafitte had the highest amount of structural damage in the study. For Cat Island, Jean Lafitte, and Pearl River, the total volume of dead material (debris) was 50, 80, and 370 m 3 ha -1 , respectively. The ratio of dead to live volume was 0.010, 0.082, and 0.039, respectively. For both of the dominant species, T. distichum and N. aquatica, the percentage of dead to live volume was less than 1. Subdominant species including Acer rubrum, Liquidambar styraciflua, Quercus lyrata, and Quercus nigra were more damaged by the storm at both Pearl River and Jean Lafitte. Only branches were damaged by Hurricane Katrina at Cat Island. Shrubs such as Morella cerifera, Euonymous sp., and Vaccinium sp. were often killed by the storm, while other species such as Cephalanthus occidentalis, Forestiera acuminata, and Cornus florida were not killed. Despite the fact that Hurricane Katrina was a Category 3 storm and struck Pearl River and Jean Lafitte fairly directly, dominant species of the T. distichum swamps were relatively little affected, even though certain subdominant and shrub species were completely removed from the species composition. ?? 2009 The Society of Wetland Scientists.

Wetlands↗

Pilot study for invasive brown treesnake baiting in residential areas

The nocturnal brown treesnake ( Boiga irregularis ; BTS) was accidentally introduced to the island of Guam, USA, in the Western Pacific in 1945. The BTS has spread throughout all terrestrial habitats, causing wildlife loss and economic damage. Several tools and techniques have been developed to locally reduce BTS numbers and prevent their spread to other islands. The common analgesic acetaminophen has been registered as a low-risk pesticide to manage BTS in non-residential areas. Prior to a more intensive toxic baiting campaign on Andersen Air Force Base, Guam, as part of a larger study to evaluate the effects of BTS control on native bird survival, we conducted a pilot study from May 18 to October 6, 2020, to assess the efficacy and safety of BTS baiting within a residential area. We administered large and small domesticated mouse ( Mus musculus ) and bird chick ( Coturnix japonica and Gallus domesticus ) nontoxic carrion baits (without acetaminophen) in bait stations to evaluate BTS and nontarget bait take rates, bait preferences, movements following nighttime bait uptakes, and interactions of humans and domestic animals with baits. We monitored baits with cameras and implanted them with radio-transmitters to verify the species taking the bait and to track BTS to their daytime sheltering locations. Successful BTS bait take rates were low at 20 of 482 baits (4.1%), as were nontarget bait take rates (4 baits; 0.8%). No preference among bait types was discernible, though power to detect differences was limited due to low overall uptake. All first daytime refugia were within vegetation except for 1 location on the roof of a house. No evidence of bait removal or human tampering was found at any of the bait stations. Based on our pilot study, there appeared to be little human or nontarget risk from acetaminophen baiting in this relatively uniform and sparsely vegetated residential area. Because most of the residential areas on Guam are much more variable, similar assessments within a broader diversity of residential areas may be advisable before promoting large-scale use of acetaminophen for managing BTS in close contact with human habitations.

Human-Wildlife Interactions↗

Western state instream flow programs: a comparative assessment

During their early history, Western States water rights laws were primarily means for facilitating and regulating water diversions for offstream, consumptive use. More recently, a countervailing concern for instream values such as fish and wildlife habitat, recreation, aesthetic values, and water quality has emerged in the legislative and administrative handling of water rights. As of 1988, the Western United States show a variety of approaches to balancing instream and diversion water rights, from zero control through administrative actions to legislatively established rights for guaranteed instream flows. The nine Western States that have adopted statutory instream flow protection programs include Alaska, Colorado, Hawaii, Idaho, Montana, Oregon, Utah, Washington, and Wyoming. Arizona, California, and Nevada have relied, to date, on administrative and judicial decisions, while New Mexico has established no mechanism for protecting instream water uses. In the States with statutory protection, instream water uses are granted the same legal status as any other water uses under the prior appropriation doctrine. The success of instream flow protection has been remarkable, given the controversial nature of the issue, with nearly 2,000 stream reaches protected.

Report↗

Irrigation-induced contamination of water, sediment, and biota in the western United States-synthesis of data from the National Irrigation Water Quality Program

In October 1985 the U.S. Department of the Interior (DOI), through the National Irrigation Water Quality Program (NIWQP), began a series of field investigations at 26 areas in the Western United States to determine whether irrigation drainage has had harmful effects on fish, wildlife, and humans or has reduced beneficial uses of water. In 1992 NIWQP initiated the Data Synthesis Project to evaluate data collected during the field investigations. Geologic, climatologic, and hydrologic data were evaluated and water, sediment, and biota from the 26 areas were analyzed to identify commonalities and dominant factors that result in irrigation-induced contamination of water and biota. Data collected for the 26 area investigations have been compiled and merged into a common data base. The structure of the data base is designed to enable assessment of relations between contaminant concentrations in water, sediment, and biota. The data base is available to the scientific community through the World Wide Web at URL http://www.usbr.gov/niwqp . Analysis of the data base for the Data Synthesis included use of summary statistics, factor analysis, and logistic regression. A Geographic Information System was used to store and analyze spatially oriented digital data such as land use, geology and evaporation rates. In the U.S. Department of the Interior (DOI) study areas, samples of water, bottom sediment, and biota were collected for trace-element and pesticide analysis. Contaminants most commonly associated with irrigation drainage were identified by comparing concentrations in water with established criteria. For surface water, the criteria used were typically chronic criteria for the protection of freshwater aquatic life. Because ground water can discharge to the surface where wildlife can be exposed to it, the criteria used for ground water were both the maximum contaminant levels (MCL's) for drinking water and the chronic criteria for the protection of freshwater aquatic life. Data collected by the NIWQP studies indicated that, in surface water, filtered and unfiltered samples had nearly the same concentrations of arsenic, boron, molybdenum, and selenium for concentrations greater than about 10 micrograms per liter. Therefore, in this concentration range, filtered concentrations can be directly compared to biological-effect levels developed for unfiltered samples. In the range of 1 to 10 micrograms per liter there may be a tendency for unfiltered arsenic concentrations to be greater than filtered concentrations. For selenium, however, the data suggest differences from equality in that range result from analytical imprecision and not a general tendency for unfiltered concentrations to be greater than filtered concentrations. This relation may not be true in lentic, nutrient-rich waters because in such settings algae can bioaccumulate large amounts of selenium and other trace elements. Selenium was the trace element in surface water that most commonly exceeded chronic criteria for the protection of freshwater aquatic life; more than 40 percent of the selenium concentrations in surface-water samples exceeded the U.S. Environmental Protection Agency (USEPA) aquatic-life chronic criterion (5 micrograms per liter). In 12 of the 26 areas at least 25 percent of the surface water-samples had selenium concentrations that either equaled or exceeded the chronic criterion (5 micrograms per liter). More than 28 percent of boron concentrations and almost 17 percent of the molybdenum concentrations exceeded the aquatic life criteria established by the State of California (550 and 19 micrograms per liter, respectively). In ground water, more than 22 percent of the arsenic concentrations and more than 35 percent of the selenium concentrations exceeded the MCL (10 and 50 micrograms per liter, respectively). Few samples of uranium in surface water exceeded a criterion for the protection of aquatic life (300 micrograms per liter), but 44 percent of the uranium concentrations in ground water exceeded the MCL (30 micrograms per liter). Molybdenum, selenium and uranium were the trace elements most commonly found in bottom-sediment samples that exceeded the upper limit of the 95th percentile expected range in soils of the Western United States. Selenium is the only trace element for which ecological sediment guidelines are used in this report. Selenium concentrations commonly exceeded the ecological sediment guideline of two micrograms per gram. DDT and its degradation products DDD and DDE were the most common pesticide residues found in surface water at concentrations exceeding criteria. However, almost all the samples exceeding the criteria were from a single study area, the Owyhee-Vale Reclamation Project areas in Oregon and Idaho. The organochlorine pesticide chlordane was detected in 30 percent of the bottom-sediment samples, and undegraded DDT was detected in 21 percent. DDT or its degradation products were detected in all 21 study areas where bottom-sediment samples were analyzed for organochlorine pesticides. A principal-components analysis indicated that elevated selenium concentrations in surface water are not associated with elevated boron, molybdenum, or arsenic concentrations. The occurrence of selenium is associated with sulfate and uranium. The association of boron and molybdenum with chloride suggests that evaporative processes control their concentrations. Arsenic is not associated with any other measured trace element and is associated negatively with selenium. This report focuses on selenium because it was the trace element most frequently found at concentrations exceeding criteria for the protection of aquatic life. Selenium concentrations in water are dynamic, and, at a given site, the selenium concentration can change by an order of magnitude during a year and from one year to another. In some areas, selenium contamination may not occur during normal or wet periods. However, during a drought, reduced water deliveries may result in selenium contamination by evaporative concentration. Marine sedimentary rocks, especially those of Late Cretaceous age, are likely to be seleniferous. Irrigation of soils derived from them can contribute large amounts of selenium to drainwater; shallow wells in and near irrigated areas contained hundreds to thousands of micrograms per liter of selenium. The median selenium concentration in surface-water samples from NIWQP sites associated with Upper Cretaceous marine sedimentary rocks is 7 micrograms per liter (range less than 1 to 8,300 micrograms per liter) and from sites not associated with such rocks is 0.4 micrograms per liter (range less than 1 to 390 micrograms per liter). Irrigation-induced selenium contamination has been observed only in arid or semiarid areas. In those NIWQP study areas having local geologic sources of selenium, typically more than 25 percent of the surface-water samples exceed the chronic criterion for selenium if the evaporation rate is 3.0 times greater than the annual precipitation. In terminal water bodies, selenium accumulates and is not flushed out. In both terminal and flow-through lakes and ponds, the median selenium concentrations in surface water for samples collected from June through August are nearly the same (1.0 and 0.8 micrograms per liter, respectively). However, the 75th-percentile selenium concentration for terminal water bodies (24 µg/L) is significantly higher than for flow-through systems (4 µg/L). Selenium concentrations in biota were compared with concentrations that have been demonstrated to have adverse effects on similar species (the effect level) or to have adverse effects on another species if consumed (the dietary effect level). Twenty-five percent of the plant samples had selenium concentrations exceeding the dietary effect level (3 micrograms per gram dry weight) whereas more than 57 percent of the invertebrate samples and 61 percent of the fish samples exceeded the dietary effect level. Of the more than 2,000 bird eggs collected, 44 percent had selenium concentrations exceeding 6 micrograms per gram, a threshold value for reduced hatchability. In 14 areas, selenium concentrations in eggs from some populations of birds exceeded 6 micrograms per gram. Selenium-caused deformities of bird embryos were found in four of the NIWQP study areas; however, most study areas were not systematically surveyed for such deformities. Eggs were sampled from 34 species of birds belonging to 10 orders. Nearly all the eggs collected come from aquatic species of birds, with American coots, mallards, and American avocets being the three species most frequently collected. Of the 34 species, at least one set of eggs from 16 species had a geometric-mean selenium concentration of at least 12.5 micrograms per gram, a high-risk threshold. All three species of grebes yielded at least one set of high risk eggs, as did four of five species of shorebirds and five of eleven species of waterfowl. Egg-set data were examined to determine if some feeding guilds are more at risk to selenium poisoning than others. Analysis of data for waterbird eggs from the study areas where the 75th percentile selenium concentration in surface water exceeded 5 µg/L suggests that herbivorous birds may bioaccumulate less selenium than insect- and fish-eating birds. For birds from these study areas, selenium concentrations for 39 percent of the egg sets from herbivorous birds fell in the normal range (less than 3 µg/g) while only 7 and 0 percent, respectively, of egg sets from insect- and fish-eating birds fall in the normal range. Although herbivorous birds may bioaccumulate less selenium, it does not appear that any waterbird feeding guilds are particularly well buffered from exposure to selenium contamination. Predictive tools were developed to aid managers in identifying specific land areas at risk for irrigation-induced selenium contamination. The tools range from identifying broad geographic regions where selenium contamination is likely, to assessing the probability that selenium concentrations in a specific stream or lake exceed the chronic criterion for selenium. A geographic information system was used to prepare a map that identifies land areas in the Western United States that are susceptible to selenium contamination if irrigated. On the basis of the 75th percentile, selenium concentration in surface water, 12 of the 26 NIWQP study areas were classified as contaminated, two as seleniferous, and 12 as uncontaminated. The map correctly identified both seleniferous areas and 10 of 12 selenium-contaminated areas as susceptible; 10 of 12 uncontaminated areas were correctly identified as not being susceptible. About 160,000 square miles are identified as being susceptible; of that area, about 4,100 square miles have been identified by satellite imagery as actively being irrigated. Principal-components analysis and pattern-recognition techniques indicate that major-ion chemistry of water samples alone can be used to identify selenium- and nonselenium-producing areas in the Western United States. Water samples composed of simple salts of sulfate typically have concentrations of selenium that exceed 3 µg/g, whereas samples composed of simple salts of chloride or carbonate typically have low selenium concentrations. Weathering of soils that contain reduced-sulfur minerals, such as pyrite, mobilizes sulfur and selenium because selenium commonly substitutes for sulfur in these minerals. In areas where the bedrock is composed of Upper Cretaceous marine sedimentary rocks, logistic regression of data from the NIWQP sites indicates that if the dissolved-solids concentration equals 1,000 milligrams per liter, the probability is about 69 percent that the selenium concentration will exceed 5 micrograms per liter, the U.S. Environmental Protection Agency chronic criterion. In areas where the bedrock is not composed of such rocks, the probability is only about 10 percent. The avian-egg data within the biotic data base were used to make a quantitative toxicological risk assessment. Of the 23 study areas where avian eggs were sampled, 14 areas yielded at least one egg containing 6 µg/g selenium, the threshold for embryotoxicity. However, only 6 of the study areas yielded eggs containing enough selenium to expect selenium-induced teratogenesis of duck embryos. Predicted probabilities of discovering embryo teratogenesis matched field observations in 13 of the 14 study areas reporting results of embryo assessments. Bird eggs were collected from 161 individual sampling sites and at 79 of those sites selenium concentrations in one or more eggs exceeded 6 µg/g. At the 79 sites where biological effects are expected on the basis of selenium concentrations in the eggs, the median rate was 3.9 percent of the hens losing at least one egg to selenium-induced embryotoxicity. This corresponds to about 1.2 percent selenium-induced egg inviability among otherwise viable eggs. Across all NIWQP study areas, the overall rate of hens projected to lose at least one egg to selenium-induced embryotoxicity is estimated to be 1.9 percent, which corresponds to about 0.3 percent selenium-induced egg inviability among otherwise viable eggs. After accounting for increased mortality of selenium poisoned-hatchlings due to other factors such as weather and predators, it was estimated that that increases of 0.3 and 1.2 percent in inviable eggs would cause approximately a 1.4 and 5.4 percent depression in nesting success. Regional surveys of nesting success among ducks revealed that duck populations commonly exist near their demographic break-even point. The vulnerable demographic condition of North American duck populations during the mid-1960's to mid-1980's was primarily due to noncontaminant factors, such as poor-quality nesting habitat and dry climatic cycles. Under such conditions, rates of 1.4- to 5.4-percent depression in nesting success caused by exposure to selenium from irrigation projects can be crucial for avian populations already close to their demographic break-even point. Even the worst-case levels of contaminant effects, however, could be tolerated by populations of ducks existing just modestly above demographic break-even points. This suggests the biotic risk to ducks could be addressed by reducing irrigation-induced water pollution but more effectively by restoring high-quality (more predator-safe) nesting habitat. An analysis at the nesting-site level was made of the relation between selenium content of water and bird eggs. Eggs from 93 bird populations were collected from nesting sites where the water sample collected during April-July contained less than 5 µg/L selenium. The average selenium concentration in egg sets was embryotoxic in 19 of the 93 populations. Of the populations collected at sites where the selenium in the water was less than 1 microgram per liter, only four of 54 populations contained embryotoxic concentrations. Eggs from 65 populations of birds were collected from nesting sites where selenium concentrations in water samples collected during April-July equaled or exceeded 5 µg/L, and 55 of those 65 populations contained embryotoxic concentrations of selenium in the eggs. An analysis at the study-area level was made of the relation between selenium contamination of water and selenium contamination of the food chain and egg loss due to selenium poisoning. Most food organisms, particularly aquatic invertebrates and fish, contained potentially harmful amounts of selenium in study areas where selenium concentrations in more than 25 percent of the water samples exceed 5 µg/L. The analysis also indicates that some hens are predicted to lose eggs to selenium poisoning in all study areas where selenium concentrations in more than 25 percent of the water samples exceed 5 µg/L. These results suggest that areas where selenium contamination of the food chain and loss of eggs to selenium poisoning is occurring may be identified using the same methods developed to identify areas where selenium contamination of water is likely to occur.

western United States↗

Wildlife in some areas of New Mexico and Texas accumulate elevated DDE residues, 1983

Over the last decade, data gathered by the U.S. Fish & Wildlife Service's National Contaminant Biomonitoring Program have identified an area of elevated DDE contamination in portions of New Mexico and Texas. Extensive wildlife sampling in 1983 confirmed that DDE, the major metabolite of the insecticide DDT, was present at high concentrations in wildlife at selected sites in the Rio Grande and Pecos River drainages. DDE in carcasses ranged up to 47 ppm (wet weight) in western kingbirds ( Tyrannus verticalis ), 35 ppm in house sparrows ( Passer domesticus ), 46 ppm in Brazilian free-tailed bats ( Tadarida brasiliensis ), and 104 ppm in whiptail lizards ( Cnemidophorus spp.). DDE was also detected in gut contents from western kingbirds at some of the highest concentrations ever reported, ranging up to 21 ppm in proventricular samples. An average of 40% of the eggs of black-crowned night-herons ( Nycticorax nycticorax ) from two sites along the Pecos River in New Mexico had DDE levels (≥8 ppm) that have been associated in other studies with impaired reproduction. In contrast, wintering mallards ( Anas platyrhynchos ) and American coots ( Fulica americana ) from the study area did not accumulate elevated DDE levels. DDE in wildlife samples at control sites (nonagricultural areas) was either absent or averaged less than 0.35 ppm. Collectively, these data provide evidence that there is major DDE contamination of several vertebrate species in portions of the Rio Grande and Pecos River drainages, but whether the contamination is recent or residual was not determined. Apparently, the source was not DDE contamination present in dicofol (4-chloro- a -(4-chlorophenyl)- a -(trichloromethyl) benzenemethanol); neither dicofol nor its metabolite, p,p' -dichlorobenzophenone, were detected in wildlife carcasses (0.1 ppm detection limit) or proventricular contents (0.01 ppm detection limit) of western kingbirds.

New Mexico, Texas↗

Modeling the effects of environmental disturbance on wildlife communities: Avian responses to prescribed fire

Prescribed fire is a management tool used to reduce fuel loads on public lands in forested areas in the western United States. Identifying the impacts of prescribed fire on bird communities in ponderosa pine (Pinus ponderosa) forests is necessary for providing land management agencies with information regarding the effects of fuel reduction on sensitive, threatened, and migratory bird species. Recent developments in occupancy modeling have established a framework for quantifying the impacts of management practices on wildlife community dynamics. We describe a Bayesian hierarchical model of multi-species occupancy accounting for detection probability, and we demonstrate the model's usefulness for identifying effects of habitat disturbances on wildlife communities. Advantages to using the model include the ability to estimate the effects of environmental impacts on rare or elusive species, the intuitive nature of the modeling, the incorporation of detection probability, the estimation of parameter uncertainty, the flexibility of the model to suit a variety of experimental designs, and the composite estimate of the response that applies to the collection of observed species as opposed to merely a small subset of common species. Our modeling of the impacts of prescribed fire on avian communities in a ponderosa pine forest in Washington indicate that prescribed fire treatments result in increased occupancy rates for several bark-insectivore, cavity-nesting species including a management species of interest, Black-backed Woodpeckers (Picoides arcticus). Three aerial insectivore species, and the ground insectivore, American Robin (Turdus migratorius), also responded positively to prescribed fire, whereas three foliage insectivores and two seed specialists, Clark's Nutcracker (Nucifraga columbiana) and the Pine Siskin (Carduelis pinus), declined following treatments. Land management agencies interested in determining the effects of habitat manipulations on wildlife communities can use these methods to provide guidance for future management activities. ?? 2009 by the Ecological Society of America.

Ecological Applications↗

Exploring and mitigating plague for One Health purposes

Purpose of Review In 2020, the Appropriations Committee for the U.S. House of Representatives directed the CDC to develop a national One Health framework to combat zoonotic diseases, including sylvatic plague, which is caused by the flea-borne bacterium Yersinia pestis . This review builds upon that multisectoral objective. We aim to increase awareness of Y. pestis and to highlight examples of plague mitigation for One Health purposes (i.e., to achieve optimal health outcomes for people, animals, plants, and their shared environment). We draw primarily upon examples from the USA, but also discuss research from Madagascar and Uganda where relevant, as Y. pestis has emerged as a zoonotic threat in those foci. Recent Findings Historically, the bulk of plague research has been directed at the disease in humans. This is not surprising, given that Y. pestis is a scourge of human history. Nevertheless, the ecology of Y. pestis is inextricably linked to other mammals and fleas under natural conditions. Accumulating evidence demonstrates Y. pestis is an unrelenting threat to multiple ecosystems, where the bacterium is capable of significantly reducing native species abundance and diversity while altering competitive and trophic relationships, food web connections, and nutrient cycles. In doing so, Y. pestis transforms ecosystems, causing “shifting baselines syndrome” in humans, where there is a gradual shift in the accepted norms for the condition of the natural environment. Eradication of Y. pestis in nature is difficult to impossible, but effective mitigation is achievable; we discuss flea vector control and One Health implications in this context. Summary There is an acute need to rapidly expand research on Y. pestis , across multiple host and flea species and varied ecosystems of the Western US and abroad, for human and environmental health purposes. The fate of many wildlife species hangs in the balance, and the implications for humans are profound in some regions. Collaborative multisectoral research is needed to define the scope of the problem in each epidemiological context and to identify, refine, and implement appropriate and effective mitigation practices.

Current Tropical Medicine Reports↗

Climate drives adaptive genetic responses associated with survival in big sagebrush (Artemisia tridentata)

A genecological approach was used to explore genetic variation for survival in Artemisia tridentata (big sagebrush). Artemisia tridentata is a widespread and foundational shrub species in western North America. This species has become extremely fragmented, to the detriment of dependent wildlife, and efforts to restore it are now a land management priority. Common-garden experiments were established at three sites with seedlings from 55 source-populations. Populations included each of the three predominant subspecies, and cytotype variations. Survival was monitored for 5 years to assess differences in survival between gardens and populations. We found evidence of adaptive genetic variation for survival. Survival within gardens differed by source-population and a substantial proportion of this variation was explained by seed climate of origin. Plants from areas with the coldest winters had the highest levels of survival, while populations from warmer and drier sites had the lowest levels of survival. Survival was lowest, 36%, in the garden that was prone to the lowest minimum temperatures. These results suggest the importance of climatic driven genetic differences and their effect on survival. Understanding how genetic variation is arrayed across the landscape, and its association with climate can greatly enhance the success of restoration and conservation.

Evolutionary Applications↗

Stock origins of Dolly Varden collected from Beaufort Sea coastal sites of Arctic Alaska and Canada

Anadromous northern Dolly Varden Salvelinus malma support a summer subsistence fishery in Beaufort Sea coastal waters. These same waters coincide with areas of oil and gas exploration and development. The purpose of this study was to assess variation in stock origins of Dolly Varden collected from sites along 400 km of Beaufort Sea coast. Mixed‐stock analyses (MSA) of allozyme data were used to compare collections from four sites (Endicott near Prudhoe Bay, Mikkelsen Bay, and Kaktovik in Alaska and Phillips Bay in Canada) and to assess variation in stock contributions among summer months and between 1987 and 1988. The MSA estimates for individual stocks were summed into estimates for three stock groups: western stocks from the area near Sagavarnirktok River and Prudhoe Bay (SAG), Arctic National Wildlife Refuge stocks (Arctic Refuge), and Canadian stocks. The MSA of Endicott samples taken in 1987 and 1988 did not differ among months in terms of contributions from local SAG stocks (range, 71–95%). Contributions from nonlocal (>100 km distant) Canadian and Arctic Refuge stocks were not different from zero in 1987, but contributions from Canadian stocks were so in July (17%) and August (20%) but not in September of 1988. Thus, stock contributions to Endicott collections were different between 1987 and 1988. Samples from the Kaktovik area in 1988 were different between months in terms of contributions from nonlocal SAG stocks (July, 7%; August, 27%). Significant contributions to these samples were made both months by Canadian (25% and 17%) and local Arctic Refuge stocks (68% and 56%). Among the four coastal sites, local stocks typically contributed most to collections; however, every site had collections that contained significant contributions from nonlocal stocks. The MSA estimates clearly revealed the movement of Dolly Varden between U.S. and Canada coastal waters. If local stocks are affected by oil and gas development activities, distant subsistence fisheries along the coast could also be affected.

Kaktovik, Mikkelsen Bay, Phillips Bay, Prudhoe Bay↗

Social attraction used to establish Caspian tern (Hydroprogne caspia) nesting colonies on modified islands at the Don Edwards San Francisco Bay National Wildlife Refuge, California—Final report

To address the 2008/2010 and Supplemental 2014 National Oceanic and Atmospheric Administration Fisheries Biological Opinion for operation of the Federal Columbia River Power System, the U.S. Army Corps of Engineers (USACE) and the Bureau of Reclamation (Reclamation) developed and began implementation of Caspian tern ( Hydroprogne caspia ) management plans. This implementation includes redistribution of the Caspian terns in the Columbia River estuary and the mid-Columbia River region to reduce predation on salmonids listed under the Endangered Species Act. Key elements of the plans are (1) reduction of nesting habitat for Caspian terns in the Columbia River estuary and the mid-Columbia River region, and (2) creation or modification of nesting habitat at alternative sites within the Caspian tern breeding range. As part of this effort, USACE and Reclamation developed Caspian tern nesting habitat at the U.S. Fish and Wildlife Service Don Edwards San Francisco Bay National Wildlife Refuge (DENWR), California, prior to the 2015 nesting season. Furthermore, nesting habitat for western snowy plovers ( Charadrius alexandrinus nivosus ) also was developed to provide separate nesting opportunities in the same managed ponds to reduce potential conflicts with Caspian terns. Specifically, seven recently constructed islands within two managed ponds (Ponds A16 and SF2) of DENWR were modified to provide habitat attractive to nesting Caspian terns (5 islands) and snowy plovers (2 islands). These 7 islands were a subset of 46 islands recently constructed in Ponds A16 and SF2 to provide waterbird nesting habitat as part of the South Bay Salt Pond (SBSP) Restoration Project. We used social attraction methods (decoys and electronic call systems) to attract Caspian terns and snowy plovers to these seven modified islands, and conducted surveys from March to September of 2015, 2016, and 2017 to evaluate nest numbers, nest density, and productivity. Results from the 2015 nesting season, the first year of the study, indicated that island modifications and social attraction measures were successful in establishing Caspian tern breeding colonies at Ponds A16 and SF2 of DENWR. Prior to 2015, there was no history of Caspian terns nesting in either Pond A16 or Pond SF2. The success of 2015 continued in 2016 and 2017. In 2017, the third and final year of the project, Caspian terns initiated at least 664 nests, fledged at least 239 chicks, and had a breeding success rate of 0.36 fledged chicks per breeding pair. This represents a 171 percent increase in the number of breeding pairs and a 41 percent increase in the number of chicks fledged, but a 48 percent decrease in the fledglings produced per breeding pair in 2017 compared to 2015, the first year the colonies were established. The two new large and growing Caspian tern nesting colonies at Ponds A16 and SF2 demonstrate the effectiveness of social attraction measures in helping to establish tern nesting colonies in San Francisco Bay. Social attraction measures similar to those used in this study, but targeting other colonial species such as Forster’s terns ( Sterna forsteri ) and American avocets ( Recurvirostra americana ), may help to establish waterbird breeding colonies at wetlands enhanced as part of the SBSP Restoration Project.

California↗

Cougar space use and movements in the wildland-urban landscape of western Washington

The wildland-urban interface lies at the confluence of human-dominated and wild landscapes, creating a number of management and conservation challenges. Because wildlife ecology, behavior, and evolution at this interface are shaped by both natural and human phenomena, this requires greater understanding of how diverse factors affect ecosystem and population processes. We illustrate the challenge of understanding and managing a frequent and often undesired inhabitant of the wildland-urban landscape, the cougar (Puma concolor). In wildland and residential areas of western Washington State, USA, we captured and radiotracked 27 cougars to model space use and understand the role of landscape features in interactions (sightings, encounters, and depredations) between cougars and humans. Resource utilization functions (RUFs) identified cougar use of areas with features that were probably attractive to prey, influential on prey vulnerability, and associated with limited or no residential development. Early-successional forest (+), conifer forest (+), distance to road (-), residential density (-), and elevation (-) were significant positive and negative predictors of use for the population, whereas use of other landscape features was highly variable. Space use and movement rates in wildland and residential areas were similar because cougars used wildland-like forest patches, reserves, and corridors in residential portions of their home range. The population RUF was a good predictor of confirmed cougar interactions, with 72% of confirmed reports occurring in the 50% of the landscape predicted to be medium-high and high cougar use areas. We believe that there is a threshold residential density at which the level of development modifies the habitat but maintains enough wildland characteristics to encourage moderate levels of cougar use and maximize the probability of interaction. Wildlife managers trying to reduce interactions between cougars and people should incorporate information on spatial ecology and landscape characteristics to identify areas with the highest overlap of human and cougar use to focus management, education, and landscape planning. Resource utilization functions provide a proactive tool to guide these activities for improved coexistence with wildlife using both wildland and residential portions of the landscape. ??2011 by the Ecological Society of America.

Ecological Applications↗

Geothermal handbook

The Bureau of Land Management offered over 400,000 hectares (one million acres) for geothermal exploration and development in 1975, and figure is expected to double this year. The Energy Research and Development Administration hopes for 10-15,000 megawatts of geothermal energy by 1985, which would require, leasing over 16.3 million hectares (37 million acres) of land, at least half of which is federal land. Since there is an 8 to 8-1/2 year time laf between initial exploration and full field development, there would have to be a ten-fold increase in the amount of federal land leased within the next three years. Seventy percent of geothermal potential, 22.3 million hectares (55 million acres), is on federal lands in the west. The implication for the Service are enormous and the problems immediate. Geothermal resource are so widespread they are found to some extent in most biomes and ecosystems in the western United States. In most cases exploitation and production of geothermal resources can be made compatible with fish and wildlife management without damage, if probable impacts are clearly understood and provided for before damage has unwittingly been allowed to occur. Planning for site suitability and concern with specific operating techniques are crucial factors. There will be opportunities for enhancement: during exploration and testing many shallow groundwater bodies may be penetrated which might be developed for wildlife use. Construction equipment and materials needed for enhancement projects will be available in areas heretofore considered remote projects will be available in areas heretofore considered remote by land managers. A comprehensive knowledge of geothermal development is necessary to avoid dangers and seize opportunities. This handbook is intended to serve as a working tool in the field. It anticipated where geothermal resource development will occur in the western United States in the near future. A set of environmental assessment procedures are presented which will allow the Service to provide input to the federal leasing process. As an impact information source by which to judge the appropriateness of a specific activity at a specific site, a discussion of activities-impacts is provided on a phase by phase basis. Mitigation and possible enhancement techniques are also presented so that the impacts of the development can be dealt with and the fish and wildlife situation improved. The Service can achieve its objective only if biological input is made throughout the entire process of geothermal development, from exploration to testing to full field operation. A discussion of geothermal leasing procedures emphasizes the timing and nature of Service participation in current interagency lease processing, and there is a provision for the utilization of new knowledge, techniques, and responses as experience is accumulated.

FWS/OBS↗