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Response to memorandum by Rowley and Dixon regarding U.S. Geological Survey report titled "Characterization of Surface-Water Resources in the Great Basin National Park Area and Their Susceptibility to Ground-Water Withdrawals in Adjacent Valleys, White Pine County, Nevada"

Applications pending for permanent permits to pump large quantities of ground water in Spring and Snake Valleys adjacent to Great Basin National Park (the Park) prompted the National Park Service to request a study by the U.S. Geological Survey to evaluate the susceptibility of the Park's surface-water resources to pumping. The result of this study was published as U.S. Geological Survey Scientific Investigations Report 2006-5099 'Characterization of Surface-Water Resources in the Great Basin National Park Area and Their Susceptibility to Ground-Water Withdrawals in Adjacent Valleys, White Pine County, Nevada,' by P.E. Elliott, D.A. Beck, and D.E. Prudic. That report identified areas within the Park where surface-water resources are susceptible to ground-water pumping; results from the study showed that three streams and several springs near the eastern edge of the Park were susceptible. However, most of the Park's surface-water resources likely would not be affected by pumping because of either low-permeability rocks or because ground water is sufficiently deep as to not be directly in contact with the streambeds. A memorandum sent by Peter D. Rowley and Gary L. Dixon, Consulting Geologists, to the Southern Nevada Water Authority (SNWA) on June 29, 2006 was critical of the report. The memorandum by Rowley and Dixon was made available to the National Park Service, the U.S. Geological Survey, and the public during the Nevada State Engineer's 'Evidentiary Exchange' process for the recent hearing on applications for ground-water permits by SNWA in Spring Valley adjacent to Great Basin National Park. The U.S. Geological Survey was asked by the National Park Service to assess the validity of the concerns and comments contained in the Rowley and Dixon memorandum. An Administrative Letter Report responding to Rowley and Dixon's concerns and comments was released to the National Park Service on October 30, 2006. The National Park Service subsequently requested that the contents with three minor changes to the Administrative Letter Report be released to the public. The first paragraph was revised to better explain how the memorandum was brought to the attention of the National Park Service and the U.S. Geological Survey and the purpose of the Administrative Letter Report. The second and third changes were minor word changes to the end of the first sentence at the top of page 11 and in the Summary statement, respectively. The Administrative Letter Report with these minor changes is reproduced herein. Lastly, the National Park Service asked me to explain the difference between potentially and likely susceptible areas used in the report. Admittedly, the report did not clearly explain their usage. Potentially susceptible areas were used in the report to identify areas where (1) ground water interacts with water in the creeks but the connection between permeable rocks in the mountains with the basin fill is uncertain or where (2) ground-water interaction with water in the creeks is less certain but permeable rocks are connected with basin fill. Likely susceptible areas were used to identify areas in the mountains and valleys where ground-water interacts with water in the creeks or discharges as springs and permeable rocks are connected with basin fill. Likely susceptible areas are, therefore, more vulnerable to ground-water pumping.

Open-File Report↗

Evidence of age-related improvement in the foraging efficiency of Adélie penguins

Age variation in reproductive performance is well-documented but the mechanisms underlying this variation remain unclear. Foraging efficiency is likely to be a key source of demographic variation as it determines the amount of energy that can be invested in fitness-related activities. Evidence of age-related changes in the foraging efficiency of adult seabirds is scarce and inconsistent. We investigated the effects of age on the foraging efficiency of breeding Adélie penguins, a relatively short-lived seabird species, in order to gain a broader perspective on the processes driving variation in ageing rates. We found support for a positive effect of age, either linear or levelling off at old ages, on both our proxies for daily catch rate and catch per unit effort. Across all age classes, males were more performant foragers than females. We found no strong evidence for differing ageing patterns between sexes or individual quality levels, and no evidence for senescence. We infer that continuous individual improvement could be responsible for a larger amount of the variation in foraging efficiency with age at our study site, compared with selective disappearance of underperforming phenotypes. The different results reported by other studies highlight the need to conduct longitudinal studies across a range of species in different environments.

Scientific Reports↗

Evaluation of a Chicken 600K SNP genotyping array in non-model species of grouse

The use of single nucleotide polymorphism (SNP) arrays to generate large SNP datasets for comparison purposes have recently become an attractive alternative to other genotyping methods. Although most SNP arrays were originally developed for domestic organisms, they can be effectively applied to wild relatives to obtain large panels of SNPs. In this study, we tested the cross-species application of the Affymetrix 600K Chicken SNP array in five species of North American prairie grouse ( Centrocercus and Tympanuchus genera). Two individuals were genotyped per species for a total of ten samples. A high proportion (91%) of the total 580 961 SNPs were genotyped in at least one individual (73–76% SNPs genotyped per species). Principal component analysis with autosomal SNPs separated the two genera, but failed to clearly distinguish species within genera. Gene ontology analysis identified a set of genes related to morphogenesis and development (including genes involved in feather development), which may be primarily responsible for large phenotypic differences between Centrocercus and Tympanuchus grouse. Our study provided evidence for successful cross-species application of the chicken SNP array in grouse which diverged ca. 37 mya from the chicken lineage. As far as we are aware, this is the first reported application of a SNP array in non-passerine birds, and it demonstrates the feasibility of using commercial SNP arrays in research on non-model bird species.

Scientific Reports↗

Downstream movement of lampreys and fish in the Carp Lake River, Michigan

An inclined-screen trap was installed on the Carp River, Emmett County, Michigan, in the spring of 1948 and has been in almost continuous operation since that time. The major goal of this project--a precise determination of the length of the larval life of sea lamprey--was not attained because of the contamination of the stream above the dam with spawning lampreys. The lampreys and other fishes collected in the trap did, however, provide extensive and valuable biological information. The present report documents much of the information, largely in tabular form, accumulated over the operating seasons, 1948-49 through 1957-58; the amount of detail has been varied according to the importance of the topic under consideration or the amount required to bring out a particular point.

Special Scientific Report - Fisheries↗

Birds imported into the United States in 1972

Birds imported into the United States in 1972 are tabulated by species. Total numbers for the period 1968-72 are given for the more commonly imported taxa. The number of birds imported in 1972 (640,995) decreased by about one third from that of 1971, largely as a result of a ban declared on the importation of birds in August 1972 due to the outbreak of exotic Newcastle,disease. Much of the decrease in numbers imported was a result of a large decrease in the numbers of parrots imported. In 1972 parrots accounted for under 9% of all birds imported, compared with nearly 25% of all imports the previous year. In 1972, 624 species were imported of which 105 had not been reported in the previous 4 years; since 1968, approximately 1,540 species have been imported. Birds were imported from 53 countries; 10 countries provided nearly 95% of the individual birds. The proportion of presumably wild-caught birds increased to about 86% compared with about 77% in 1971.

Special Scientific Report - Wildlife↗

Preliminary results of the first scientific Drilling on Lake Baikal, Buguldeika site, southeastern Siberia

The Baikal Drilling Project (BDP) is a multinational effort to investigate the paleoclimatic history and tectonic evolution of the Baikal sedimentary basin during the Late Neogene. In March 1993 the Baikal drilling system was successfuly deployed from a barge frozen into position over a topographic high, termed the Buguldeika saddle, in the southern basin of Lake Baikal. The BDP-93 scientific team, made up of Russian, American and Japanese scientists, successfully recovered the first long (>100 m) hydraulic piston cores from two holes in 354 m of water. High quality cores of 98 m (Hole 1) and 102 m (Hole 2), representing sedimentation over the last 500,000 years, were collected in 78 mm diameter plastic liners with an average recovery of 72% and 90%, respectively. Magnetic susceptibility logging reveals an excellent hole-to-hole correlation. In this report the scientific team describes the preliminary analytical results from BDP-93 hole 1 cores. Radiocarbon dating by accelerator mass spectrometry provides an accurate chronology for the upper portion of Hole 1. Detailed lithologic characteristics, rock magnetic properties and inorganic element distributions show a significant change to the depositional environment occuring at 50 m subbottom depth, approximately 250,000 BP. This change may be due to uplift and rotation of the horst block in the Buguldeika saddle. The sedimentary section above 50 m is pelitic with varve-like laminae, whereas the section below 50 m contains a high proportion of sand and gravel horizons often organized into turbidite sequences. Accordingly, high resolution seismic records reveal a change in sonic velocity at this depth. It is inferred that sedimentation prior to 250 ka BP was from the west via the Buguldeika river system. After 250 ka BP the Buguldeika saddle reflects an increase in hemipelagic sediments admixed with fine-grained material from the Selenga River drainage basin, east of Lake Baikal. Variations in the spore-pollen assemblage, diatoms, biogenic silica content, rock magnetic properties, clay mineralogy and organic carbon in the upper 50 m of BDP-93-1 reveal a detailed record of climate change over approximately the last 250,000 years. These variables alternate in a pattern characteristic of glacial/interglacial climatic fluctuations. The present age model suggests that the climate signal recorded in Lake Baikal sediments is similar to Late Quaternary signals recorded in Chinese loess sections and in marine sediments.

Siberia↗

Widespread episodic thiamine deficiency in Northern Hemisphere wildlife

Many wildlife populations are declining at rates higher than can be explained by known threats to biodiversity. Recently, thiamine (vitamin B 1 ) deficiency has emerged as a possible contributing cause. Here, thiamine status was systematically investigated in three animal classes: bivalves, ray-finned fishes, and birds. Thiamine diphosphate is required as a cofactor in at least five life-sustaining enzymes that are required for basic cellular metabolism. Analysis of different phosphorylated forms of thiamine, as well as of activities and amount of holoenzyme and apoenzyme forms of thiamine-dependent enzymes, revealed episodically occurring thiamine deficiency in all three animal classes. These biochemical effects were also linked to secondary effects on growth, condition, liver size, blood chemistry and composition, histopathology, swimming behaviour and endurance, parasite infestation, and reproduction. It is unlikely that the thiamine deficiency is caused by impaired phosphorylation within the cells. Rather, the results point towards insufficient amounts of thiamine in the food. By investigating a large geographic area, by extending the focus from lethal to sublethal thiamine deficiency, and by linking biochemical alterations to secondary effects, we demonstrate that the problem of thiamine deficiency is considerably more widespread and severe than previously reported.

Scientific Reports↗

Significance of lead residues in mallard tissues

Tissues of adult, lead-dosed mallards that either died or were sacrificed were analyzed for lead. Lead levels in brains, tibiae, and breast muscle of ducks that died and in tibiae of ducks that were sacrificed increased significantly from dosage until death. Lead in the heart, lung, and blood from sacrificed ducks decreased significantly from dosage until death. Lead concentrations in tissues from ducks in the two groups were not significantly different except for the liver, kidney, and lung. Average lead levels in the livers and kidneys of ducks that died were significantly higher than those in ducks that were sacrificed. The mean concentration of lead in the lungs of the ducks sacrificed was significantly higher than the mean level in the lungs of ducks that died. Measurements of the lead concentrations in this study, when compared with lead levels reported in the literature for avian and non-avian species, showed that arbitrary diagnostic levels indicating lead poisoning could be set. In mallard ducks, lead levels exceeding 3 ppm in the brain, 6 to 20 ppm in the kidney or liver, or 10 ppm in clotted blood from the heart indicated acute exposure to lead.

Special Scientific Report - Wildlife↗

A bibliography of references to avian botulism

This bibliography, first compiled in 1970 in response to many requests for information on avian botulism, has been updated to include the literature published through 1975. In general, only articles dealing primarily with the avian disease are included, as opposed to those concerned with various aspects of the biology of Clostridium botulinum , either type C or type E. A few exceptions, such as Bengton’s report of the first isolation and description of the type C organism, are included for their historical interest. Progress reports and other administrative documents not available for distribution or request are excluded, as are textbook accounts, which are generally summaries of work published elsewhere. Although Mr. Allen and Mrs. Wilson have attempted to list every important reference, they make no claim to complete coverage of the published literature. The authors will be grateful to users of the bibliography who call attention to errors or omissions.

Special Scientific Report - Wildlife↗

Prevalent flucocorticoid and androgen activity in US water sources

Contamination of the environment with endocrine disrupting chemicals (EDCs) is a major health concern. The presence of estrogenic compounds in water and their deleterious effect are well documented. However, detection and monitoring of other classes of EDCs is limited. Here we utilize a high-throughput live cell assay based on sub-cellular relocalization of GFP-tagged glucocorticoid and androgen receptors (GFP-GR and GFP-AR), in combination with gene transcription analysis, to screen for glucocorticoid and androgen activity in water samples. We report previously unrecognized glucocorticoid activity in 27%, and androgen activity in 35% of tested water sources from 14 states in the US. Steroids of both classes impact body development, metabolism, and interfere with reproductive, endocrine, and immune systems. This prevalent contamination could negatively affect wildlife and human populations.

Scientific Reports↗

Birds of Isle Royale in Lake Superior

This report constitutes an annotated list of 197 species of birds reported from Isle Royale National Park, a 210-square-mile archipelago in northwestern Lake Superior including some 200 islets and rock outcrops. The island is 45 miles long and 8 miles wide at its widest point. Bird distribution and habitats are described, along with geography and vegetation; 62 species are known to have bred at least once, 26 are thought to be breeders, and the rest are migrants.

Special Scientific Report - Wildlife↗

The literature of the California black rail

Few birds have remained so little known as the California black rail ( Laterallus jamaicensis coturniculus ). Although first collected in 1859 or before and reported in 1874 (Ridgway 1874), its life history, distribution, and status have remained so obscure that even a sight record of the bird is deemed worthy of a report in some ornithological publications. Because degradation and loss of freshwater and saltwater marshlands in California may be detrimentally affecting the black rail, both the U.S. Bureau of Sport Fisheries and Wildlife (1973) and the California Department of Fish and Game (1972) have classified it as rare and worthy of further study. The 84 papers and notes both summarized in this report and included in its bibliography include essentially all that is currently known about the California black rail. Only 11 of these papers consider the life history of this rail in any detail. The rest are distribution notes and some of the more important papers on the closely related eastern black rail ( L. j. jamaicensis ). The latter are included for comparative purposes, or because they may lend clues to currently unknown facets of the life history of the western race.

Special Scientific Report - Wildlife↗

A virus disease of sockeye salmon: Interim report

Since 1951 a disease, usually occurring in late spring or early summer, has caused severe losses in 3- to 12-month-old fingerling sockeye salmon in hatcheries in the State of Washington. The disease is characterized by an explosive outbreak, mortality usually 80 percent or greater, and a residual spinal deformity in a small percentage of the surviving fish, and its specificity for the one species of salmon, Oncorhynchus nerka. (The anadromous strain of this species is commonly known as sockeye, blueback, or red salmon, while the fresh-water strain is called kokanee or silver trout.) The etiological agent is believed to be a virus.

Special Scientific Report - Fisheries↗

Geological Survey research 1972, Chapter C

This collection of 37 short papers is the second published chapter of "Geological Survey Research 1972." The papers report on scientific and economic results of current work by members of the Conservation, Geologic, and Water Resources Divisions of the U.S. Geological Survey. Chapter A, to be published later in the year, will present a summary of significant results of work done ~n fiscal year 1972, together with lists of investigations in progress, cooperating agencies, and Geological Survey offices. "Geological Survey Research 1972" is the thirteenth volume of the annual series Geological Survey Research. The twelve volumes already published are listed below, with their series designations.

Professional Paper↗

A report upon the Grand Coulee Fish Maintenance Project 1939-1947

The construction or Grand Coulee Dam, on the upper Columbia River, involved the loss of 1,140 lineal miles of spawning and rearing stream to the production of anadromous fishes. The fact that the annual value of these fish runs to the nation was estimated at $250,000 justified reasonable expenditures to assure their perpetuation. It was found economically infeasible to safely collect and pass adult fish upstream and fingerling fish downstream at the dam because of the tremendous flow of the river and the 320 foot vertical difference in elevation between forebay and tailrace. The Grand Coulee Fish-Maintenance Project, undertaken by the United States Fish and Wildlife Service in 1939, consisted in relocating the anadroumous runs of the upper Columbia River to four major tributaries entering below the Grand Coulee damsite. These streams were believed capable of supporting several times their existing, badly depleted, run. The plan was predicated upon the assumption that the relocated runs, in conformity with their "homing tendency", would return to the lower tributaries rather than attempt to reach their ancestral spawning grounds above Grand Coulee Dam. This interim report covers the history and accomplishments of the Grand Coulee Fish-Maintenance Project through the initial period of relocating the rune as well as the first four years of the permanent program. Results obtained to date indicate conclusive success in diverting the upper Columbia fish runs into the accessible lower tributaries. The results also indicate, less conclusively, that - in spite of many existing handicaps - the upper Columbia salmon and steelhead runs may be rehabilitated through the integrated program of natural and artificial propagation incorporated in the Grand Coulee Fish-Maintenance Project.

Washington↗

Outburst floods provide erodability estimates consistent with long-term landscape evolution

Most current models for the landscape evolution over geological timescales are based on semi-empirical laws that consider riverbed incision proportional to rock erodability (dependent on lithology) and to the work performed by water flow (stream power). However, the erodability values obtained from these models are entangled with poorly known conditions of past climate and streamflow. Here we use the erosion reported for 82 outburst floods triggered by overtopping lakes as a way to estimate the outlet erodability. This avoids the common assumptions regarding past hydrology because water discharge from overtopping floods is often well constrained from geomorphological evidence along the spillway. This novel methodology yields values of erodability that show a quantitative relation to lithology similar to previous river erosion analyses, expanding the range of hydrological and temporal scales of fluvial incision models and suggesting some consistency between the mathematical formulations of long-term and catastrophic erosional mechanisms. Our results also clarify conditions leading to the runaway erosion responsible for outburst floods triggered by overtopping lakes.

Scientific Reports↗

Bibliography of references to avian botulism: Update

This bibliography, first compiled in 1970 (Allen and Wilson 1977) and published in 1977 in response to many requests for information on avian botulism, has been updated to include the literature published through 1980. In general, only articles dealing primarily with the avian disease are included, as opposed to those concerned with the various aspects of the biology of Clostridium botulinum , either type C or E. A few exceptions, such as Bengtson's report of the first isolation and description of the type C organism, are included for their historical interest. Progress reports and other administrative documents not available for distribution on request are excluded, as are most textbook accounts, which are generally summaries of work published elsewhere. This bibliography was a cooperative effort by the National Wildlife Health Laboratory, U.S. Fish and Wildlife Service, and the U.S. National Park Service. The National Park Service provided partial funding for the work through Contract No. 89100-0491. Although the authors attempted to list every important reference, they make no claim to complete coverage of the published literature. The authors will be grateful to users of the bibliography who call attention to errors or omissions. Wayne I. Jensen (Retired) Milton Friend, Director, National Wildlife Health Laboratory

Special Scientific Report - Wildlife↗

Comparative Dietary Toxicities of Pesticides to Birds

This report presents measurements of the lethal dietary toxicity of 89 pesticidal chemicals to young bowhites, Japanese quail, ring-necked pheasants, and mallards. Toxicity is expressed as the median lethal concentration (LC 50) of active chemical in a 5-day ad libitum diet. LC 50's and associated statistics are derived by methods of probit analysis. Endrin consistently was the most toxic chemical while aldrin and dieldrin were among the six most toxic chemicals of those tested on all species. In general, organophosphates were less toxic than aldrin or dieldrin and herbicides were of a low order of toxicity. There were obvious inconsistencies in the relative sensitivity of the four species to various chemicals.

Special Scientific Report - Wildlife↗