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USGS2016

Predictive mapping of seabirds, pinnipeds and cetaceans off the Pacific Coast of Washington

About this report This report supports Washington-led marine spatial planning and responsible stewardship of natural and cultural resources by the Olympic Coast National Marine Sanctuary. Washington state agencies and the sanctuary continually seek the best available science to improve management of marine uses and stewardship of resources (Etheridge et al., 2010; Washington Department of Fish and Wildlife, 2015a). This report and associated data provide new, state- and sanctuary-requested information on seabird, pinniped, and cetacean distributions. Through spatial planning, information on species distributions can help to identify high-value conservation areas, minimize adverse effects of ocean uses and mitigate impacts of coastal hazards. Correspondingly, the Washington Department of Fish and Wildlife has already begun to use the maps of predicted relative density presented in this report to identify ecologically important areas off the Pacific Coast of Washington and apply this information to plan for offshore renewable energy development. This is the culmination of three years of work to compile information on seabirds, pinnipeds, and cetaceans, and advance a modeling framework that can integrate data sets and develop accurate predictions of relative density for important species off the Pacific Coast of Washington. Previous reports, which evaluated existing datasets of at-sea observations (Menza et al., 2014; Kracker and Menza, 2015) and presented superseded versions of seabird models (Menza et al., 2015), provided base information for this report. In addition to the maps in this published report, all new seabird, pinniped and cetacean predictions will be made publicly available as digital geospatial data through the National Centers for Environmental Information. This research supports the National Oceanic and Atmospheric Administration (NOAA) Coastal Zone Management Program, a voluntary partnership between the federal government and U.S. coastal and Great Lakes states and territories authorized by the Coastal Zone Management Act (CZMA) of 1972 to address national coastal issues. The act provides the basis for protecting, restoring, and responsibly developing our nation’s diverse coastal communities and resources. To meet the goals of the CZMA, the national program takes a comprehensive approach to coastal resource management – balancing the often competing and occasionally conflicting demands of coastal resource use, economic development, and conservation. A wide range of issues are addressed through the program, including coastal development, water quality, public access, habitat protection, energy facility siting, ocean governance and planning, coastal hazards, and climate change. Accurate maps of seabird and marine mammal distributions are an important tool for making informed management decisions that affect all of these issues.

Washington↗

USGS2005

Gulf of Mexico Integrated Science - Tampa Bay Study: Examining the Impact of Urbanization on Seafloor Habitats

Seafloor habitats, such as seagrass beds, provide essential habitat for fish and marine mammals. For many years, the study of seagrass vitality has been a priority for scientists and resource managers working in Tampa Bay. Seafloor habitats are extremely sensitive to changes in water quality. Like a canary in a coal mine, seagrass can serve as an ecological indicator of estuary health. Between the 1940s and the 1970s, seagrass gradually died in Tampa Bay. This loss has been attributed to a rise in urbanization and an increase in nutrient loading into the bay. Better treatment of industrial wastewater and runoff beginning in the 1980s resulted in the continuous recovery of seagrass beds. However, in the mid-1990s, the recovery began to level off in areas where good water quality was expected to support continued seagrass recovery, demonstrating that nutrient loading may be only one factor impacting seagrass health. Researchers now are trying to determine what might be affecting the recovery of seagrass in these areas. Currently, little is understood about the effects that other aspects of urbanization and natural change, such as groundwater and sediment quality, might have on seagrass vitality. This segment of the Tampa Bay integrated science study is intended to identify, quantify, and develop models that illustrate the impact that urbanization may have on seafloor habitat distribution, health, and restoration.

Open-File Report↗

USGS1955

Macracanthorhynchus ingens from raccoons in Maryland

There have been very few published records of the occurrence of the acanthocephalan parasite Macracanthorhynchus ingens (von Linstow, 1897) in North America. Chandler (1942) and Moore (1946) reported 11 o 13 raccoons ( Procyon lotor ) trapped in Angelina County, Texas, infected with these intestinal parasites. From 1 to 90 worms occurred in these animals. Chandler and Melvin (1951), in a study of parasites collected from mammals in Pennsylvania, reported M. ingens common in its usual host, the raccoon, and also found immature worms believed to belong to this species in skunk, Mephitis nigra ; mink, Mustela vision ; fox, Urocyon cineraoargenteus ; and mole, Parascalops breweri . Van Cleave (1953), in a review of North American Acanthocephala, lists the definitive host as raccoon of the States of Texas and Pennsylvania. He further states: “It is thought that the apparent discontinuous distribution of M. ingens is due to incomplete records of its occurrence in intervening states.” Subsequently, Goldberg (1954) reported 5 specimens of M. ingens in one of 14 skunks from Beltsville, Md. This parasite appears to be fairly common in raccoons from Maryland, as indicated by material from two stations in the State. Of 44 intestinal tracts collected during the winter months, 1943-1946, at the Patuxent Research Refuge, laurel, Maryland, 22 (50%) contained M. ingens in their intestines (Ediger, 1950). Numbers of these parasites per host varied from 1 to 125. Since then, additional raccoons from the Patuxent Research refuge have been found infected with M. ingens . The parasite has also been noted in raccoons collected from the Blackwater National Wildlife refuge and surrounding areas, near Cambridge on the eastern shore of Maryland. One raccoon obtained in May, 1950, contained five specimens of M. ingens . In a series of raccoons obtained by V.T. Harris, during the winter months 1950-1951, 32 (37%) of 86 raccoons examined were infected with M. ingens . Intensity varied from 1 to 44 worms per raccoon.

Maryland↗

USGS2010

Effects of chemical immobilization on survival of African buffalo in the Kruger National Park

Capturing, immobilizing, and fitting radiocollars are common practices in studies of large mammals, but success is based on the assumptions that captured animals are representative of the rest of the population and that the capture procedure has negligible effects. We estimated effects of chemical immobilization on mortality rates of African buffalo (Syncerus caffer) in the Kruger National Park, South Africa. We used a Cox proportional hazards approach to test for differences in mortality among age, sex, and capture classes of repeatedly captured radiocollared buffalo. Capture variables did not improve model fit and the Cox regression did not indicate increased risk of death for captured individuals up to 90 days postcapture [exp (??) = 1.07]. Estimated confidence intervals, however, span from a halving to a doubling of the mortality rate (95% CI = 0.56-2.02). Therefore, capture did not influence survival of captured individuals using data on 875 captures over a 5-year period. Consequently, long-term research projects on African buffalo involving immobilization, such as associated with research on bovine tuberculosis, should result in minimal capture mortality, but monitoring of possible effects should continue.

Journal of Wildlife Management↗

USGS2018

Introduction - The impacts of the 2008 eruption of Kasatochi Volcano on terrestrial and marine ecosystems in the Aleutian Islands, Alaska

The Aleutian Islands are situated on the northern edge of the so-called “Pacific Ring of Fire,” a 40,000-km-long horseshoe-shaped assemblage of continental landmasses and islands bordering the Pacific Ocean basin that contains many of the world's active and dormant volcanoes. Schaefer et al. (2009) listed 27 historically active volcanoes in the Aleutian Islands, of which nine have had at least one major eruptive event since 1990. Volcanic eruptions are often significant natural disturbances, and ecosystem responses to volcanic eruptions may vary markedly with eruption style (effusive versus explosive), frequency, and magnitude of the eruption as well as isolation of the disturbed sites from potential colonizing organisms (del Moral and Grishin, 1999). Despite the relatively high frequency of volcanic activity in the Aleutians, the response of island ecosystems to volcanic disturbances is largely unstudied because of the region's isolation. The only ecological studies in the region that address the effects of volcanic activity were done on Bogoslof Island, a remote, highly active volcanic island in the eastern Aleutians, which grew from a submarine eruption in 1796 (Merriam, 1910; Byrd et al., 1980; Byrd and Williams, 1994). Nevertheless, in the 214 years of Bogoslof's existence, the island has been visited only intermittently. Kasatochi Island is a small (2.9 km by 2.6 km, 314 m high) volcano in the central Aleutian Islands of Alaska (52.17°N latitude, 175.51°W longitude; Fig. 1) that erupted violently on 7-8 August 2008 after a brief, but intense period of precursory seismic activity (Scott et al., 2010 [this issue]; Waythomas et al., in review). The island is part of the Aleutian arc volcanic front, and is an isolated singular island. Although the immediate offshore areas are relatively shallow (20–50 m water depth), the island is about 10 km south of the 2000 m isobath, north of which, ocean depths increase markedly. Kasatochi is located between the deepwater basin of the Bering Sea to the north and shallower areas of intense upwelling in Atka and Fenimore Passes in the North Pacific Ocean to the south. This area apparently produces high marine productivity based on concentrations of feeding marine birds and mammals (see Drew et al., 2010 [this issue]). Kasatochi is about 85 km northeast of Adak, the nearest community and a regional transportation hub, and about 19 km northwest of the western end of Atka Island. The nearest historically active volcanoes are Great Sitkin volcano, about 35 km to the west, and Korovin volcano on Atka Island, about 94 km to the east. Koniuji Island, another small volcanic island, is located about 25 km east of Kasatochi (Fig. 1).

Alaska↗

USGS2012

Nonsteroidal anti-inflammatory drugs in raptors

The use of analgesia has become standard, and appropriate, practice in avian medicine. As in mammals, pain control in avian patients is usually accomplished with opioids and nonsteroidal anti-inflammatory drugs (NSAIDs) used singly or in combination for a multimodal approach. Despite their usefulness, widespread use, and relative safety in clinical use, few controlled studies in birds have been conducted on efficacy, safety, and dosing. The guidelines for the use of NSAIDs in raptors and other birds have mainly been empirical. More recently, NSAIDs in free-living raptors have emerged as a major conservation issue with the discovery that diclofenac sodium was responsible for the population crash of three species of Gyps vultures in southern Asia. In this context, residues of veterinary NSAIDs in domestic animals are now considered environmental contaminants that can be significantly toxic to vultures and possibly other avian scavengers. Ironically, the disaster with Asian vultures has led to a considerable body of research on NSAIDs in raptors to the benefit of clinicians who now have scientific information available to help assess dosing, safety, toxicity, and pharmacokinetics of NSAIDs in their raptor patients.

Book chapter↗

USGS2022

Deltamethrin reduces survival of non-target small mammals

Context: Vector-borne diseases have caused global pandemics and were responsible for more human deaths than all other causes combined in prior centuries. In the past 60 years, prevention and control programs have helped reduce human mortality from vector-borne diseases, but impacts of those control programs on wildlife populations are not well documented. Insecticides are used to reduce vector-borne diseases in several critically endangered animal populations. Although insecticides are often effective at controlling targeted vectors, their effects on non-target species have rarely been examined. Aims: To evaluate the impact of deltamethrin (an insecticide) on sympatric non-target species in areas affected by sylvatic plague, a lethal flea-borne zoonosis. Methods: We compared flea control and the effect of deltamethrin application on survival of non-target small mammals ( Peromyscus maniculatus , Chaetodipus hispidus , Microtus spp., and Reithrodontomys megalotis ) at three study locations in South Dakota, Colorado, and Idaho, USA. Key results: Deltamethrin treatments were more effective in reducing fleas on P. maniculatus and Microtus spp. than C. hispidus . Following burrow, nest, and bait-station applications of deltamethrin dust, apparent small mammal survival was greater for non-treatment animals than for flea-reduction animals. However, the magnitude of the difference between treated and non-treated animals differed among host species, study location, time interval, and treatment application method. Conclusions: Our results suggest that considering the impact of deltamethrin on co-occurring non-target species before widespread application in future insecticide applications is warranted. Implications: Insecticide application methods warrant consideration when designing plague management actions.

Colorado, Idaho, South Dakota↗

USGS2010

Mapping brucellosis increases relative to elk density using hierarchical Bayesian models

The relationship between host density and parasite transmission is central to the effectiveness of many disease management strategies. Few studies, however, have empirically estimated this relationship particularly in large mammals. We applied hierarchical Bayesian methods to a 19-year dataset of over 6400 brucellosis tests of adult female elk ( Cervus elaphus ) in northwestern Wyoming. Management captures that occurred from January to March were over two times more likely to be seropositive than hunted elk that were killed in September to December, while accounting for site and year effects. Areas with supplemental feeding grounds for elk had higher seroprevalence in 1991 than other regions, but by 2009 many areas distant from the feeding grounds were of comparable seroprevalence. The increases in brucellosis seroprevalence were correlated with elk densities at the elk management unit, or hunt area, scale (mean 2070 km 2 ; range = [95–10237]). The data, however, could not differentiate among linear and non-linear effects of host density. Therefore, control efforts that focus on reducing elk densities at a broad spatial scale were only weakly supported. Additional research on how a few, large groups within a region may be driving disease dynamics is needed for more targeted and effective management interventions. Brucellosis appears to be expanding its range into new regions and elk populations, which is likely to further complicate the United States brucellosis eradication program. This study is an example of how the dynamics of host populations can affect their ability to serve as disease reservoirs.

Wyoming↗

USGS2020

Testing prediction accuracy in short-term ecological studies

Applied ecology is based on an assumption that a management action will result in a predicted outcome. Testing the prediction accuracy of ecological models is the most powerful way of evaluating the knowledge implicit in this cause-effect relationship, however, the prevalence of predictive modeling and prediction testing are spreading slowly in ecology. The challenge of prediction testing is particularly acute for small-scale studies, because withholding data for prediction testing (e.g., via k -fold cross validation) can reduce model precision. However, by necessity small-scale studies are common. We use one such study that explored small mammal abundance along an elevational gradient to test prediction accuracy of models with varying degrees of information content. For each of three small mammal species, we conducted 5000 iterations of the following process: (1) randomly selected 75 % of the data to develop generalized linear models of species abundance that used detailed site measurements as covariates, (2) used an information theoretic approach to compare the top model with detailed covariates to habitat type-only and null models constructed with the same data, (3) tested those models’ ability to predict the 25 % of the randomly withheld data, and (4) evaluated prediction accuracy with a quadratic loss function. Detailed models fit the model-evaluation data best but had greater expected prediction error when predicting out-of-sample data relative to the habitat type models. Relationships between species and detailed site variables may be evident only within the framework of explicitly hierarchical analyses. We show that even with a small but relatively typical dataset ( n = 28 sampling locations across 125 km over two years), researchers can effectively compare models with different information content and measure models’ predictive power, thus evaluating their own ecological understanding and defining the limits of their inferences. Identifying the appropriate scope of inference through prediction testing is ecologically valuable and is attainable even with small datasets.

Maine, New Hampshire↗

USGS2003

Protecting embryos from stress: Corticosterone effects and the corticosterone response to capture and confinement during pregnancy in a live-bearing lizard (Hoplodactylus maculatus)

Hormones in the embryonic environment, including those of the hypothalamo-pituitary-adrenal (HPA) axis, have profound effects on development in eutherian mammals. However, little is known about their effects in reptiles that have independently evolved viviparity. We investigated whether exogenous corticosterone affected embryonic development in the viviparous gecko Hoplodactylus maculatus, and whether pregnant geckos have a corticosterone response to capture and confinement that is suppressed relative to that in non-pregnant (vitellogenic) females and males. Corticosterone implants (5 mg, slow-release) administered to females in mid-pregnancy caused a large elevation of corticosterone in maternal plasma (P<0.001), probable reductions in embryonic growth and development (P=0.069-0.073), developmental abnormalities and eventual abortions. Cool temperature produced similar reductions in embryonic growth and development (P???0.036 cf. warm controls), but pregnancies were eventually successful. Despite the potentially harmful effects of elevated plasma corticosterone, pregnant females did not suppress their corticosterone response to capture and confinement relative to vitellogenic females, and both groups of females had higher responses than males. Future research should address whether lower maternal doses of corticosterone produce non-lethal effects on development that could contribute to phenotypic plasticity. Corticosterone implants also led to increased basking in pregnant females (P<0.001), and basal corticosterone in wild geckos (independent of reproductive condition) was positively correlated with body temperature (P<0.001). Interactions between temperature and corticosterone may have broad significance to other terrestrial ectotherms, and body temperature should be considered as a variable influencing plasma corticosterone concentrations in all future studies on reptiles. ?? 2003 Elsevier Inc. All rights reserved.

General and Comparative Endocrinology↗

USGS2019

Applying the ecology of aquatic–terrestrial linkages to freshwater and riparian management

Global stressors such as climate change, invasive species, urbanization, agricultural practices, and pollution can alter aquatic resource subsidies to terrestrial consumers. The effects of these stressors on timing, quality, and quantity of aquatic subsidies, such as adult aquatic insects, to birds, herpetofauna, and mammals, have large implications for wildlife management (Baxter et al. 2004 , Saunders and Fausch 2007 , Walters et al. 2008 , Sullivan and Rodewald 2012 , Morrissey et al. 2015 , Kraus et al. 2016 , Larsen et al. 2016 , Sullivan et al. 2019 ). For example, insect-mediated contaminant transport from polluted rivers expose song bird nestlings and other protected birds to potentially toxic levels of persistent organic contaminants and pharmaceuticals (Walters et al. 2010 , Richmond et al. 2018 ). Recent declines in aquatic insect production caused by pollution and changes in land use have been tied to global declines in terrestrial insectivores such as birds and bats (Hallmann et al. 2014 , Morrissey et al. 2015 , Raby et al. 2018 ). These natural-resource impacts from aquatic–terrestrial exposure and loss of resource subsidies are leading to changes in monitoring protocols and how management agencies evaluate the effectiveness of corrective remedies (Muehlbauer et al. 2019 ). For researchers interested in the application of resource subsidy research, a logical next step is to help practitioners anticipate effects of global stressors on aquatic-terrestrial linkages and incorporate these principles into decision making.

Freshwater Science↗

USGS2018

A multi-species synthesis of satellite telemetry data in the Pacific Arctic (1987–2015): Overlap of marine mammal distributions and core use areas

We collated available satellite telemetry data for six species of ice-associated marine mammals in the Pacific Arctic: ringed seals ( Pusa hispida ; n = 118), bearded seals( Erignathus barbatus, n = 51), spotted seals ( Phoca largha , n = 72), Pacific walruses ( Odobenus rosmarus divergens, n = 389); bowhead whales ( Balaena mysticetus , n = 46), and five Arctic and sub-arctic stocks of beluga whales ( Delphinapterus leucas , n = 103). We also included one seasonal resident, eastern North Pacific gray whales ( Eschrichtius robustus , n = 12). This review summarized the distribution of daily locations from satellite-linked transmitters during two analysis periods, summer (May–November) and winter (December–April), and then examined the overlap among species. Six multi-species core use areas were identified during the summer period: 1) Chukotka/Bering Strait; 2) Norton Sound; 3) Kotzebue Sound; 4) the northeastern Chukchi Sea; 5) Mackenzie River Delta/Amundsen Gulf; and 6) Viscount Melville Sound. During the winter period, we identified four multi-species core use areas: 1) Anadyr Gulf/Strait; 2) central Bering Sea; 3) Nunivak Island; and 4) Bristol Bay. During the summer period, four of the six areas were centered on the greater Bering Strait region and the northwestern coast of Alaska and included most of the species we examined. The two remaining summer areas were in the western Canadian Arctic and were largely defined by the seasonal presence of Bering-Chukchi-Beaufort stock bowhead whales and Eastern Beaufort Sea stock beluga whales, whose distribution overlapped during both summer and winter periods. During the winter period, the main multi-species core use area was located near the Gulf of Anadyr and extended northwards through Anadyr and Bering Straits. This area is contained within the Bering Sea “green belt”, an area of enhanced primary and secondary productivity in the Bering Sea. We also described available telemetry data and where they can be found as of 2017. These data are important for understanding ice-associated marine mammal movements and habitat use in the Pacific Arctic and should be archived, with appropriate metadata, to ensure they are available for future retrospective analyses.

Deep Sea Research Part II: Topical Studies in Ocea↗

USGS2012

A circumpolar monitoring framework for polar bears

Polar bears ( Ursus maritimus ) occupy remote regions that are characterized by harsh weather and limited access. Polar bear populations can only persist where temporal and spatial availability of sea ice provides adequate access to their marine mammal prey. Observed declines in sea ice availability will continue as long as greenhouse gas concentrations rise. At the same time, human intrusion and pollution levels in the Arctic are expected to increase. A circumpolar understanding of the cumulative impacts of current and future stressors is lacking, long-term trends are known from only a few subpopulations, and there is no globally coordinated effort to monitor effects of stressors. Here, we describe a framework for an integrated circumpolar monitoring plan to detect ongoing patterns, predict future trends, and identify the most vulnerable polar bear subpopulations. We recommend strategies for monitoring subpopulation abundance and trends, reproduction, survival, ecosystem change, human-caused mortality, human–bear conflict, prey availability, health, stature, distribution, behavioral change, and the effects that monitoring itself may have on polar bears. We assign monitoring intensity for each subpopulation through adaptive assessment of the quality of existing baseline data and research accessibility. A global perspective is achieved by recommending high intensity monitoring for at least one subpopulation in each of four major polar bear ecoregions. Collection of data on harvest, where it occurs, and remote sensing of habitat, should occur with the same intensity for all subpopulations. We outline how local traditional knowledge may most effectively be combined with the best scientific methods to provide comparable and complementary lines of evidence. We also outline how previously collected intensive monitoring data may be sub-sampled to guide future sampling frequencies and develop indirect estimates or indices of subpopulation status. Adoption of this framework will inform management and policy responses to changing worldwide polar bear status and trends.

Ursus↗

USGS2010

Hierarchical spatial models for predicting pygmy rabbit distribution and relative abundance

Conservationists routinely use species distribution models to plan conservation, restoration and development actions, while ecologists use them to infer process from pattern. These models tend to work well for common or easily observable species, but are of limited utility for rare and cryptic species. This may be because honest accounting of known observation bias and spatial autocorrelation are rarely included, thereby limiting statistical inference of resulting distribution maps. We specified and implemented a spatially explicit Bayesian hierarchical model for a cryptic mammal species (pygmy rabbit Brachylagus idahoensis). Our approach used two levels of indirect sign that are naturally hierarchical (burrows and faecal pellets) to build a model that allows for inference on regression coefficients as well as spatially explicit model parameters. We also produced maps of rabbit distribution (occupied burrows) and relative abundance (number of burrows expected to be occupied by pygmy rabbits). The model demonstrated statistically rigorous spatial prediction by including spatial autocorrelation and measurement uncertainty. We demonstrated flexibility of our modelling framework by depicting probabilistic distribution predictions using different assumptions of pygmy rabbit habitat requirements. Spatial representations of the variance of posterior predictive distributions were obtained to evaluate heterogeneity in model fit across the spatial domain. Leave-one-out cross-validation was conducted to evaluate the overall model fit. Synthesis and applications. Our method draws on the strengths of previous work, thereby bridging and extending two active areas of ecological research: species distribution models and multi-state occupancy modelling. Our framework can be extended to encompass both larger extents and other species for which direct estimation of abundance is difficult. ?? 2010 The Authors. Journal compilation ?? 2010 British Ecological Society.

Journal of Applied Ecology↗

USGS1972

An Analysis of the Population Dynamics of Selected Avian Species--With Special References to Changes During the Modern Pesticide Era

The impact of pesticides on the mortality rates and recruitment rates of nongame birds during the last 25 years was evaluated by studying the population dynamics of 16 species. A mathematical model showing the relations between population parameters that yielded stable populations was developed. The information needed for the model included (1) mortality rate schedule (obtained from recoveries of banded birds), (2) recruitment rates, and (3) the age of sexual maturity. The rate of recruitment necessary for a stable population and/or the annual rate of change (increase or decrease) in population levels were estimated. Population parameters were compared to determine whether changes had occurred between time periods (i.e., 1925-45 vs. 1946-65). The great horned owl, red-shouldered hawk, sparrow hawk, osprey, barn owl, Cooper's hawk, red-tailed hawk, great blue heron, blackcrowned night heron, brown pelican, barn swallow, chimney swift, blue jay, blackcapped chickadee, cardinal, and robin were subjected to this analysis. No increase in postfledging mortality rates in any of the species was detected during the last 25 years (since 1945). Since there was no evidence of increased mortality rates it was concluded that accelerated declines in several of the species studied resulted from lowered reproductive success. Mortality rates were found to have decreased in the Cooper's hawk, sparrow hawk, great blue heron, and brown pelican and this was associated with a decrease in shooting pressure. Evidence of lower recruitment rates was found in the brown pelican, osprey, Cooper's hawk, red-shouldered hawk, and sparrow hawk. No changes in recruitment rates were noted in the red-tailed hawk, great horned owl, great blue heron, or barn owl. Information on recruitment rates was not available for comparison with the other species although rates of recruitment essential for a stable population were estimated. This work will provide the basis for making comparisons in future studies. No change in recruitment rates was apparent among species feeding primarily on mammals. Species exhibiting a lowered reproductive success since 1945 were those whose major food items consisted of fish, reptiles, amphibians, or birds. Lowered reproductive success was accompanied by a decrease in eggshell thickness. Other investigators have reported that sparrow hawks and mallard ducks fed a diet of DDE and dieldrin have produced thin eggshells under laboratory conditions, and exhibited a lower, reproductive success. Many of the bird species that have declined are those that consume food in which chlorinated hydrocarbon pesticides have been concentrated through a series of transfers along food chains. The chlorinated hydrocarbon pesticides are believed responsible.

Wildlife Research Report↗

USGS1977

Effects of off-road vehicles on vertebrates in the California desert

Off-road vehicle (ORV) use provides a form of outdoor recreation that is increasingly popular. The purpose of this study was to examine the impact of these machines on creosote shrub habitat and associated wildlife in the western California Desert. Comparisons at eight paired sites (Control and ORV use) demonstrate that ORV-use areas have significantly fewer species of vertebrates, greatly reduced abundance of individuals, and noticeably lower reptile and small mammal biomass. Diversity, density, and biomass of reptiles and small mammals are inversely related to the level of ORV usage. The number of individuals found in heavily used and pit areas was 55% and 20%, respectively, of that present in undisturbed sites. Biomass estimates were even lower (23% and 17%, respectively). Censuses at three localities also showed decreased diversity, density, and biomass estimates of breeding birds in DRV-used areas. Present evidence indicates that off-road vehicles have a negative effect on desert wildlife over large areas. This widespread impact must be recognized to manage and conserve resources in DRV-use areas.

California↗

USGS2018

Museum metabarcoding: a novel method revealing gut helminth communities of small mammals across space and time

Natural history collections spanning multiple decades provide fundamental historical baselines to measure and understand changing biodiversity. New technologies such as next generation DNA sequencing (NGS) have considerably increased the potential of museum specimens to address significant questions regarding the impact of environmental changes on host and parasite/pathogen dynamics. We developed a new technique to identify intestinal helminth parasites and applied it to shrews (Eulipotyphla: Soricidae) because they are ubiquitous, occupy diverse habitats, and host a diverse and abundant parasite fauna. Notably, we included museum specimens preserved in various ways to explore the efficacy of using metabarcoding analyses that may enable identification of helminth symbiont communities from historical archives. We successfully sequenced the parasite communities (using 12S mtDNA, 16S mtDNA, 28S rDNA) of 23 whole gastrointestinal (GI) tracts. All GI tracts were obtained from the Museum of Southwestern Biology (MSB), USA, and from recent field collections, varying both in time since fixation (ranging from 4 months to 16 years) and preservation method (70% or 95% ethanol stored at room temperature, or flash frozen in liquid nitrogen and stored at -80°C). Our proof of concept demonstrates the feasibility of applying NGS techniques to authoritatively identify the parasite/pathogen communities within whole GI tracts from museum specimens of varying age and fixation, and the value of future preservation of host-associated whole GI tracts in public research archives. This powerful approach facilitates future comparative examinations of the distributions and interactions among multiple associated groups of organisms through time and space.

International Journal for Parasitology↗

USGS2026

Agency approach to allocation of human capital and program composition for human-marine mammal interaction management in the United States

Introduction: Marine mammals have served important and diverse roles throughout human history. Once exploited to near extinction, many species in the United States (U.S.) have recovered dramatically under the Marine Mammal Protection Act (MMPA). The U.S. National Marine Fisheries Service (NMFS) has jurisdiction to administer the MMPA for cetaceans and most pinnipeds. While most take is now prohibited, NMFS still dedicates significant time and resources to protecting and conserving marine mammals. As human populations continue to grow and exploit marine environments, opportunities for human-marine mammal interactions (HMMI) have increased. Resources may fail to keep up with growing needs for conservation investments, so that many agencies struggle to adequately meet social and legal requirements. Methods: This study evaluated NMFS’ approach to addressing HMMI through a mixed-methods (semi-structured interviews, quantitative questionnaire, and facilitated workshops) expert elicitation analysis of resource allocation (i.e., staff time) and priorities of NMFS Science Center (SC) and Regional Office (RO) staff across five geographic regions to understand how employee time is allocated, the degree to which employee time allocation is aligned with self-reported job descriptions, and employee perceptions of actions or investments which would improve their ability to mitigate HMMI. Results and Discussion: SC staff reported spending more time on Biological and Administrative tasks , while RO staff allocated more time to Policy, Social science , and Outreach tasks . SC employees spent less time on Biological tasks than specified by their perceived job descriptions, suggesting resource constraints. Participants identified Biological research and monitoring as top priorities, followed by Policy tasks . Identified actions included increasing research capacity, enhancing enforcement, expanding social science expertise, and improving outreach programs. The study reveals mismatches between mandated activities and available resources, suggesting strategic reallocation or increased funding may benefit the agency in effectively addressing growing HMMI challenges.

Frontiers in Marine Science↗